BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13718
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TPZ|A Chain A, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
pdb|3TPZ|B Chain B, 2.1 Angstrom Crystal Structure Of The L114p Mutant Of E.
Coli Ksga
Length = 273
Score = 57.4 bits (137), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>pdb|1QYR|A Chain A, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|1QYR|B Chain B, 2.1 Angstrom Crystal Structure Of Ksga: A Universally
Conserved Adenosine Dimethyltransferase
pdb|4ADV|V Chain V, Structure Of The E. Coli Methyltransferase Ksga Bound To
The E. Coli 30s Ribosomal Subunit
Length = 252
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 132 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 191
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 192 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 242
Query: 118 QIC 120
Q+
Sbjct: 243 QMA 245
>pdb|3TQS|A Chain A, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|B Chain B, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|C Chain C, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
pdb|3TQS|D Chain D, Structure Of The Dimethyladenosine Transferase (Ksga) From
Coxiella Burnetii
Length = 255
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 60/123 (48%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
+ A G RLS+ Q +C+ + FT+ +AF P P+V+ ++ PR H +
Sbjct: 138 ITAEVGSHDYGRLSVXAQYFCDNTYLFTVSPQAFTPPPRVESAIIRLIPR-HNFTPVAKN 196
Query: 61 L--IERVVSCIFRYRQKQVYKP-ASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
L + VV F YR+K V L+ P + LLE + P LRP +L+V++F
Sbjct: 197 LDQLSHVVKEAFSYRRKTVGNALKKLINPSQ-----WPLLE---INPQLRPQELTVEDFV 248
Query: 118 QIC 120
+I
Sbjct: 249 KIS 251
>pdb|3FYC|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
pdb|3FYC|B Chain B, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 265
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
M+A EG + RLS+ Q+ +V+ +P AF PKP+V +V P
Sbjct: 127 MVAKEGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHIENEN 186
Query: 61 LIERVVSCIFRYRQKQVYKP 80
+ + IF++R K V K
Sbjct: 187 FFDDFLRAIFQHRNKSVRKA 206
>pdb|3GRR|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Homocysteine And Methanocaldococcus Jannaschi Dim1.
pdb|3GRU|A Chain A, Crystal Structure Of The Complex Between Amp And
Methanocaldococcus Jannaschi Dim1
pdb|3GRV|A Chain A, Crystal Structure Of The Complex Between Adenosine And
Methanocaldococcus Jannaschi Dim1
pdb|3GRY|A Chain A, Crystal Structure Of The Complex Between S-Adenosyl
Methionine And Methanocaldococcus Jannaschi Dim1
Length = 295
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
M+A G + RLS+ Q+ +V+ +P AF PKP+V +V P
Sbjct: 154 MVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHIENEN 213
Query: 61 LIERVVSCIFRYRQKQVYKP 80
+ + IF++R K V K
Sbjct: 214 FFDDFLRAIFQHRNKSVRKA 233
>pdb|3UZU|A Chain A, The Structure Of The Ribosomal Rna Small Subunit
Methyltransferase A From Burkholderia Pseudomallei
Length = 279
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV-HPIIDLPF 59
M+A G + RLS+M Q +D +P ++F P P+VD +V P H + +
Sbjct: 156 MVAEPGTKAFSRLSVMLQYRYVMDKLIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDP 215
Query: 60 KLIERVVSCIFRYRQKQV 77
++ VV+ F R+K +
Sbjct: 216 AVLGEVVTAAFSQRRKML 233
>pdb|3FYD|A Chain A, Crystal Structure Of Dim1 From The Thermophilic Archeon,
Methanocaldococcus Jannaschi
Length = 263
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
M+A G + RLS+ Q+ +V+ +P AF PKP+V +V P
Sbjct: 125 MVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHIENEN 184
Query: 61 LIERVVSCIFRYRQKQVYKP 80
+ + IF++R K V K
Sbjct: 185 FFDDFLRAIFQHRNKSVRKA 204
>pdb|1ZQ9|A Chain A, Crystal Structure Of Human Dimethyladenosine Transferase
pdb|1ZQ9|B Chain B, Crystal Structure Of Human Dimethyladenosine Transferase
Length = 285
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHP 53
++A G + CRLSI Q VDH + F P P+V+ VV P+ P
Sbjct: 135 LVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPP 187
>pdb|2H1R|A Chain A, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
pdb|2H1R|B Chain B, Crystal Structure Of A Dimethyladenosine Transferase From
Plasmodium Falciparum
Length = 299
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 57/133 (42%), Gaps = 12/133 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
M+A G RL+I + +C V + +F P P+VD +V P+ + F
Sbjct: 148 MLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKLIPKESSFLT-NFD 206
Query: 61 LIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERA----CVKPILRPYQLSVQEF 116
+ ++ F ++K ++ +F KR V+++LE C P +++
Sbjct: 207 EWDNLLRICFSRKRKTLHA----IF---KRNAVLNMLEHNYKNWCTLNKQVPVNFPFKKY 259
Query: 117 GQICLAYRDMCEE 129
L + DMCE+
Sbjct: 260 CLDVLEHLDMCEK 272
>pdb|3FUU|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With Adenosine In Space Group P212121
pdb|3FUV|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUV|C Chain C, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P43212
pdb|3FUW|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|A Chain A, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|B Chain B, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
pdb|3FUX|C Chain C, T. Thermophilus 16s Rrna A1518 And A1519 Methyltransferase
(Ksga) In Complex With 5'-Methylthioadenosine In Space
Group P212121
Length = 271
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 13 LSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVVSCIFRY 72
L++ + + F +P AF P P+V +V TP +D P + R+V F
Sbjct: 163 LTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVRLTP--TGALDDPG--LFRLVEAAFGK 218
Query: 73 RQKQVYKP-ASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQI 119
R+K + A+ +PK + V L + P +R +L ++ F ++
Sbjct: 219 RRKTLLNALAAAGYPKAR---VEEALRALGLPPRVRAEELDLEAFRRL 263
>pdb|3FUT|A Chain A, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
pdb|3FUT|B Chain B, Apo-Form Of T. Thermophilus 16s Rrna A1518 And A1519
Methyltransferase (Ksga) In Space Group P21212
Length = 271
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 13 LSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVVSCIFRY 72
L++ + + F +P AF P P+V +V TP +D P + R+V F
Sbjct: 163 LTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVRLTP--TGALDDPG--LFRLVEAAFGK 218
Query: 73 RQKQVYKP-ASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQI 119
R+K + A+ +PK + V L + P +R +L ++ F ++
Sbjct: 219 RRKTLLNALAAAGYPKAR---VEEALRALGLPPRVRAEELDLEAFRRL 263
>pdb|3E1S|A Chain A, Structure Of An N-Terminal Truncation Of Deinococcus
Radiodurans Recd2
pdb|3GP8|A Chain A, Crystal Structure Of The Binary Complex Of Recd2 With Dna
pdb|3GPL|A Chain A, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
pdb|3GPL|B Chain B, Crystal Structure Of The Ternary Complex Of Recd2 With Dna
And Adpnp
Length = 574
Score = 27.7 bits (60), Expect = 2.9, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 28 TIPGKAFIPKPQVDVGVVHFTPRVHP 53
T G +F+P+ + + GVVH+T RV P
Sbjct: 87 TQAGHSFLPRSRAEKGVVHYT-RVTP 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.142 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,212,591
Number of Sequences: 62578
Number of extensions: 208339
Number of successful extensions: 432
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 421
Number of HSP's gapped (non-prelim): 16
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)