BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13718
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q811P6|TFB1M_RAT Dimethyladenosine transferase 1, mitochondrial OS=Rattus norvegicus
GN=Tfb1m PE=2 SV=1
Length = 345
Score = 149 bits (376), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 74/160 (46%), Positives = 104/160 (65%), Gaps = 4/160 (2%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
++AT G +QR RLSIM Q CNV+H FTIPGKAF+PKP+VDVGVVH P V P I PFK
Sbjct: 184 LVATTGSKQRSRLSIMAQYLCNVEHLFTIPGKAFVPKPEVDVGVVHLMPLVQPKIKQPFK 243
Query: 61 LIERVVSCIFRYRQKQVYKPASLLFPKRKR-QLVVSLLERACVKPILRPYQLSVQEFGQI 119
L+E+VV +F++R+K ++ +LFP+ +R + LL+ A + P LRP LS+ F +
Sbjct: 244 LVEKVVQNVFQFRRKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSL 303
Query: 120 CLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDE 159
C YR MC+E P L+ Y + +++ + QE +GD
Sbjct: 304 CDVYRKMCDEDPQLFAYNFRE---ELKQKKRKGQEKDGDS 340
>sp|Q8WVM0|TFB1M_HUMAN Dimethyladenosine transferase 1, mitochondrial OS=Homo sapiens
GN=TFB1M PE=1 SV=1
Length = 346
Score = 148 bits (374), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 107/166 (64%), Gaps = 4/166 (2%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
+ A G +QR RLS+M Q CNV H FTIPG+AF+PKP+VDVGVVHFTP + P I+ PFK
Sbjct: 184 LAANTGSKQRSRLSVMAQYLCNVRHIFTIPGQAFVPKPEVDVGVVHFTPLIQPKIEQPFK 243
Query: 61 LIERVVSCIFRYRQKQVYKPASLLFPKRKR-QLVVSLLERACVKPILRPYQLSVQEFGQI 119
L+E+VV +F++R+K ++ +LFP+ +R + LLE A + P LRP QLS+ F +
Sbjct: 244 LVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADIDPTLRPRQLSISHFKSL 303
Query: 120 CLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDEIDFNKL 165
C YR MC+E P L+ Y + +++ +E E D+ + +L
Sbjct: 304 CDVYRKMCDEDPQLFAYNFRE---ELKRRKSKNEEKEEDDAENYRL 346
>sp|Q2PG46|TFB1M_MACFA Dimethyladenosine transferase 1, mitochondrial OS=Macaca
fascicularis GN=TFB1M PE=2 SV=1
Length = 345
Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 105/163 (64%), Gaps = 4/163 (2%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
+ A G +QR RLS+M Q CNV H FTIPG+AF+PKP+VDVGVVHFTP + P I+ PFK
Sbjct: 184 LAANTGSKQRSRLSVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFK 243
Query: 61 LIERVVSCIFRYRQKQVYKPASLLFPKRKR-QLVVSLLERACVKPILRPYQLSVQEFGQI 119
L+E+VV +F++R+K ++ +LFP+ +R + LLE A + P LRP QLS+ F +
Sbjct: 244 LVEKVVQNVFQFRRKYCHRGLGMLFPEAQRLENTGRLLELADIDPTLRPRQLSISHFKSL 303
Query: 120 CLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDEIDF 162
C YR MC+E P L+ Y + ++ + ++E + D +
Sbjct: 304 CEVYRRMCDEDPQLFAYNFRE---ELRQRKIKKKEKQDDAKSY 343
>sp|Q28HM1|TFB1M_XENTR Dimethyladenosine transferase 1, mitochondrial OS=Xenopus
tropicalis GN=tfb1m PE=2 SV=1
Length = 346
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 106/161 (65%), Gaps = 1/161 (0%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
+ A+ +QR RLSIM QN CNV + FTIPG+AF+PKP+VDVGVVHFTP + P I+ PFK
Sbjct: 184 LTASTSSKQRSRLSIMAQNLCNVKNCFTIPGRAFVPKPEVDVGVVHFTPFIQPKIEQPFK 243
Query: 61 LIERVVSCIFRYRQKQVYKPASLLFPKRKR-QLVVSLLERACVKPILRPYQLSVQEFGQI 119
++E+VV +F++R+K + S+LFP+ R + +L A V P LRP +L++ F ++
Sbjct: 244 VVEKVVRSVFQFRRKYCHHGVSILFPEESRLKCTEQMLRLADVDPTLRPTELTMTHFKKL 303
Query: 120 CLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDEI 160
C YR+MC++ P L+ Y + + + +EGE D++
Sbjct: 304 CNVYREMCDQNPNLFAYNFREELRMRKLQGKTTEEGEEDDL 344
>sp|Q8JZM0|TFB1M_MOUSE Dimethyladenosine transferase 1, mitochondrial OS=Mus musculus
GN=Tfb1m PE=2 SV=1
Length = 345
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 73/159 (45%), Positives = 103/159 (64%), Gaps = 4/159 (2%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
++AT G +Q RLSIM Q CNV+H FTIPGKAF+PKP+VDVGVVH TP + P I PFK
Sbjct: 184 LVATTGSKQHSRLSIMAQYLCNVEHLFTIPGKAFVPKPKVDVGVVHLTPLIEPKIKQPFK 243
Query: 61 LIERVVSCIFRYRQKQVYKPASLLFPKRKR-QLVVSLLERACVKPILRPYQLSVQEFGQI 119
L+E+VV F++R+K ++ +LFP+ +R + LL+ A + P LRP LS+ F +
Sbjct: 244 LVEKVVQNAFQFRRKYCHRGLGMLFPEAQRLESTGRLLQLADIDPTLRPTHLSLMHFKSL 303
Query: 120 CLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGD 158
C YR MC+E P L+ Y + +++ + QE +GD
Sbjct: 304 CDVYRKMCDEDPQLFTYNFRE---ELKQKKSKGQEKDGD 339
>sp|Q5R4V9|TFB1M_PONAB Dimethyladenosine transferase 1, mitochondrial OS=Pongo abelii
GN=TFB1M PE=2 SV=1
Length = 343
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/162 (45%), Positives = 104/162 (64%), Gaps = 4/162 (2%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
+ A G +QR RLS+M Q CNV H FTIPG+AF+PKP+VDVGVVHFTP + P I+ PFK
Sbjct: 184 LAANTGSKQRSRLSVMAQYLCNVRHIFTIPGRAFVPKPEVDVGVVHFTPLIQPKIEQPFK 243
Query: 61 LIERVVSCIFRYRQKQVYKPASLLFPKRKR-QLVVSLLERACVKPILRPYQLSVQEFGQI 119
L+E+VV +F++R+K ++ +LFP+ +R + LLE A V P LRP Q S+ F +
Sbjct: 244 LVEKVVQNVFQFRRKYCHRGLRMLFPEAQRLESTGRLLELADVDPTLRPCQPSISHFKSL 303
Query: 120 CLAYRDMCEEMPGLYEYTLEDTPGDIEPEAVAEQEGEGDEID 161
C YR MC+E P L+ Y + +++ +E E D+ +
Sbjct: 304 CDVYRKMCDEDPQLFAYNFRE---ELKQRKSKNEEKEEDDAE 342
>sp|Q7T0W5|TFB1M_XENLA Dimethyladenosine transferase 1, mitochondrial OS=Xenopus laevis
GN=tfb1m PE=2 SV=1
Length = 344
Score = 145 bits (365), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 96/138 (69%), Gaps = 1/138 (0%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
+ A+ +QR RLSIM Q CNV + FTIPG+AFIPKP+VDVGVVH TP V P I+ PFK
Sbjct: 184 LTASTKNKQRSRLSIMSQYLCNVKNCFTIPGRAFIPKPKVDVGVVHLTPFVQPKIEQPFK 243
Query: 61 LIERVVSCIFRYRQKQVYKPASLLFPKRKR-QLVVSLLERACVKPILRPYQLSVQEFGQI 119
L+E+VV CIF++R+K + S+LFP+ R QL +L A V P LRP +L++ F ++
Sbjct: 244 LVEKVVRCIFQFRRKYCHHGVSILFPEEIRIQLTEQMLRLADVDPTLRPTELTMTHFKKL 303
Query: 120 CLAYRDMCEEMPGLYEYT 137
C YR+MC++ P L+ Y
Sbjct: 304 CNVYREMCDQNPHLFSYN 321
>sp|Q2TBQ0|TFB1M_BOVIN Mitochondrial dimethyladenosine transferase 1 OS=Bos taurus
GN=TFB1M PE=2 SV=2
Length = 341
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 70/141 (49%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
+ AT G +QR RLSIM Q C+V H TIPG+AF+PKP+VD GVVHFTP P I PFK
Sbjct: 184 LTATTGSKQRSRLSIMAQYLCDVQHILTIPGQAFVPKPEVDSGVVHFTPLTRPRIKQPFK 243
Query: 61 LIERVVSCIFRYRQKQVYKPASLLFPKRKR-QLVVSLLERACVKPILRPYQLSVQEFGQI 119
L+E+VV F++R+K ++ +LFP+ +R + LLE A V P LRP QL+V F +
Sbjct: 244 LVEKVVQNAFQFRRKYCHRGLGMLFPEARRLESTGKLLELADVDPTLRPTQLTVSHFKSL 303
Query: 120 CLAYRDMCEEMPGLYEYTLED 140
C YR MC+E P L+ Y +
Sbjct: 304 CDVYRKMCDEDPHLFAYNFRE 324
>sp|Q2LZ79|TFB1M_DROPS Dimethyladenosine transferase 1, mitochondrial OS=Drosophila
pseudoobscura pseudoobscura GN=mtTFB1 PE=3 SV=2
Length = 337
Score = 110 bits (274), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/150 (43%), Positives = 86/150 (57%), Gaps = 4/150 (2%)
Query: 6 GMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERV 65
G EQRCRLS+M Q W +F IPGKAF+PKPQVDVGVV P P LPF L+ERV
Sbjct: 188 GSEQRCRLSVMSQIWTEPVMKFIIPGKAFVPKPQVDVGVVKLIPLKQPKTQLPFSLVERV 247
Query: 66 VSCIFRYRQKQVYKP-ASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYR 124
V IF RQK + +LL P + + +L +RA V+ LR ++LSV + ++ AY
Sbjct: 248 VRHIFSMRQKYCRRGYGTLLPPDSREETTQTLFQRADVRDTLRSFELSVPQCLRLADAYA 307
Query: 125 DMCEEMPGL--YEYTLEDTPGDIEPEAVAE 152
+ +E P + Y+Y P D+ A A
Sbjct: 308 EYIKEHPEVEAYDYRGPKNP-DVSGAAAAS 336
>sp|Q9VTM5|TFB1M_DROME Dimethyladenosine transferase 1, mitochondrial OS=Drosophila
melanogaster GN=mtTFB1 PE=2 SV=2
Length = 330
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 82/145 (56%), Gaps = 2/145 (1%)
Query: 3 ATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLI 62
A G EQRCRLS+M Q W +FTIPGKAF+PKPQVDVGVV P P LPF L+
Sbjct: 185 APVGGEQRCRLSVMSQVWTEPVMKFTIPGKAFVPKPQVDVGVVKLIPLKRPKTQLPFHLV 244
Query: 63 ERVVSCIFRYRQKQVYKPASLLFPKRKRQLVV-SLLERACVKPILRPYQLSVQEFGQICL 121
ERVV IF RQK + L P R+ V L +RA V+ LRP++L+V++ ++
Sbjct: 245 ERVVRHIFSMRQKYCRRGYGTLLPPEDREEVAEKLFQRAEVQDTLRPFELTVEQCLRLAE 304
Query: 122 AYRDMCEEMPGLYEYTLEDTPGDIE 146
Y + P + Y P ++E
Sbjct: 305 VYSEHLVTRPEVAAYDYR-APKNVE 328
>sp|P91424|TFB1M_CAEEL Dimethyladenosine transferase 1, mitochondrial OS=Caenorhabditis
elegans GN=T03F1.7 PE=3 SV=2
Length = 367
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 77/140 (55%), Gaps = 1/140 (0%)
Query: 8 EQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVVS 67
+ R R+SIM Q F I G F+P+PQVDVGVV F PR P+++ F+++E+V
Sbjct: 191 DTRSRISIMSQYVAEPKMVFQISGSCFVPRPQVDVGVVRFVPRKTPLVNTSFEVLEKVCR 250
Query: 68 CIFRYRQKQVYKPASLLFPKR-KRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDM 126
+F YRQK V K L+P+ + +L LL++ + P +L +++F + Y +
Sbjct: 251 QVFHYRQKYVTKGLKTLYPEELEDELSDDLLKKCRIDPTTTSIRLGIEQFADLAEGYNEQ 310
Query: 127 CEEMPGLYEYTLEDTPGDIE 146
C PGL+ Y + ++E
Sbjct: 311 CIRYPGLFLYDYTNKLHNLE 330
>sp|Q1A705|TFB1M_HARVE Dimethyladenosine transferase 1, mitochondrial OS=Hartmannella
vermiformis PE=3 SV=1
Length = 343
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPI-IDLPF 59
+IA G +Q RL++M Q C+V IPG AF+PKP VD +V PRV P+ +++P
Sbjct: 212 LIANPGTKQYSRLTVMTQQLCSVKKLSDIPGSAFVPKPDVDASLVSMVPRVTPLGVNVPT 271
Query: 60 KLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQI 119
+E V +F R+K + L P+ + LL RA + P LRP QL+V ++ +
Sbjct: 272 PTLEYVCRQVFGQRRKMINNSVKTLGPEAE-----ILLARAHIDPTLRPEQLTVPQWCDL 326
Query: 120 CLAYR 124
AY+
Sbjct: 327 ARAYQ 331
>sp|Q9I5U5|RSMA_PSEAE Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rsmA PE=3 SV=1
Length = 268
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 64/135 (47%), Gaps = 16/135 (11%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
+ AT G RLSIM Q C V+H F + AF P P+VD +V TP HP D
Sbjct: 145 LAATPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLTPFAEPPHPARDP 204
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
KL+ERVV F R+K + L L V +E A V P LRP QL + F
Sbjct: 205 --KLLERVVREAFNQRRKTLRNTLKPL-------LSVEDIEAAEVDPTLRPEQLDLAAFV 255
Query: 118 QICLAYRDMCEEMPG 132
++ + E+PG
Sbjct: 256 RLA----NQLAELPG 266
>sp|A5IIC0|RSMA_LEGPC Ribosomal RNA small subunit methyltransferase A OS=Legionella
pneumophila (strain Corby) GN=rsmA PE=3 SV=1
Length = 256
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 3 ATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTP-RVHPIIDLPFKL 61
AT G + RLS+M Q C V++ F +P +AF PKP+VD +V TP RV P + +
Sbjct: 140 ATHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPKPKVDSAIVRLTPYRVSPFESVNTEK 199
Query: 62 IERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQIC 120
+E +V+ F R+K L K + +S L + RP Q+SV E+ Q+
Sbjct: 200 LENIVAKAFAMRRKT-------LTNNLKGIISLSQLNDLGIDGGKRPEQISVAEYVQLA 251
>sp|Q5X0V1|RSMA_LEGPA Ribosomal RNA small subunit methyltransferase A OS=Legionella
pneumophila (strain Paris) GN=rsmA PE=3 SV=1
Length = 256
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 61/119 (51%), Gaps = 8/119 (6%)
Query: 3 ATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTP-RVHPIIDLPFKL 61
AT G + RLS+M Q C V++ F +P +AF PKP+VD +V TP RV P + +
Sbjct: 140 ATHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPKPKVDSAIVRLTPYRVSPFESVNTEK 199
Query: 62 IERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQIC 120
+E +V+ F R+K L K + +S L + RP Q+SV E+ Q+
Sbjct: 200 LENIVAKAFAMRRKT-------LTNNLKGIISLSQLNDLGIDGGKRPEQISVAEYVQLA 251
>sp|Q38V22|RSMA_LACSS Ribosomal RNA small subunit methyltransferase A OS=Lactobacillus
sakei subsp. sakei (strain 23K) GN=rsmA PE=3 SV=1
Length = 297
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 63/121 (52%), Gaps = 3/121 (2%)
Query: 3 ATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPF-KL 61
A G + LSI Q V F +P AF+P+P VD +V F R P++ + +L
Sbjct: 163 AAPGSKAYGSLSIAVQLHSEVKLAFIVPKTAFVPQPNVDSAIVEFVGRQEPLVTVQNQQL 222
Query: 62 IERVVSCIFRYRQKQVYKPASLLFPKRK--RQLVVSLLERACVKPILRPYQLSVQEFGQI 119
+++V F R+K ++ F K++ + +V+ L++A + P R QLS+Q+F Q+
Sbjct: 223 FDQLVRGAFAQRRKTLWNNLQNQFGKQEEVKAGLVAALDQADIAPSTRAEQLSIQQFAQL 282
Query: 120 C 120
Sbjct: 283 S 283
>sp|Q5ZRF4|RSMA_LEGPH Ribosomal RNA small subunit methyltransferase A OS=Legionella
pneumophila subsp. pneumophila (strain Philadelphia 1 /
ATCC 33152 / DSM 7513) GN=rsmA PE=3 SV=1
Length = 256
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 3 ATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTP-RVHPIIDLPFKL 61
A G + RLS+M Q C V++ F +P +AF P+P+VD +V TP RV P + +
Sbjct: 140 AAHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPRPKVDSAIVRLTPYRVSPFESVNTEK 199
Query: 62 IERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQIC 120
+E +V+ F R+K L K + +S L + RP Q+SV E+ Q+
Sbjct: 200 LENIVAKAFAMRRKT-------LTNNLKGIISLSQLNDLGIDGGKRPEQISVAEYVQLA 251
>sp|Q5WSM3|RSMA_LEGPL Ribosomal RNA small subunit methyltransferase A OS=Legionella
pneumophila (strain Lens) GN=rsmA PE=3 SV=1
Length = 256
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 60/119 (50%), Gaps = 8/119 (6%)
Query: 3 ATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTP-RVHPIIDLPFKL 61
A G + RLS+M Q C V++ F +P +AF P+P+VD +V TP RV P + +
Sbjct: 140 AAHGTKAYGRLSVMLQYHCEVEYLFDVPPEAFEPRPKVDSAIVRLTPHRVSPFESVNTEK 199
Query: 62 IERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQIC 120
+E +V+ F R+K L K + +S L + RP Q+SV E+ Q+
Sbjct: 200 LENIVAKAFAMRRKT-------LTNNLKGIISLSQLNDLGIDGGKRPEQISVAEYVQLA 251
>sp|Q88QT6|RSMA_PSEPK Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
putida (strain KT2440) GN=rsmA PE=3 SV=1
Length = 267
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 55/119 (46%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
M A G RLSIM Q C V+H F + AF P P+VD +V P H ++ P K
Sbjct: 145 MAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVP--HEVLPFPAK 202
Query: 61 ---LIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
L+ERVV F R+K + L L + +E A V LRP QL + F
Sbjct: 203 DHLLLERVVREAFNQRRKTLRNTMKGL-------LDSAAIEAAGVDGSLRPEQLDLAAF 254
>sp|Q3K5T2|RSMA_PSEPF Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
fluorescens (strain Pf0-1) GN=rsmA PE=3 SV=1
Length = 272
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
+ A G RLSIM Q C V+H F + AF P P+VD +V P HP D
Sbjct: 145 LAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPHAVLPHPAKD- 203
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+L+ERVV F R+K + K+ L + +E A V LRP QL + F
Sbjct: 204 -HRLLERVVREAFNQRRKTLRNTL-------KQLLSNAEIEAAGVDGSLRPEQLDLAAFV 255
Query: 118 QICLAYRDMCEEMP 131
++ D E P
Sbjct: 256 RLA----DKLAEQP 265
>sp|Q4K4X5|RSMA_PSEF5 Ribosomal RNA small subunit methyltransferase A OS=Pseudomonas
fluorescens (strain Pf-5 / ATCC BAA-477) GN=rsmA PE=3
SV=1
Length = 270
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
+ A G RLSIM Q C V+H F + AF P P+VD +V P HP D
Sbjct: 145 LAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDSAIVRLVPHAVLPHPAKD- 203
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
+L+ER+V F R+K + L L + +E A V LRP QL + F
Sbjct: 204 -HRLLERIVREAFNQRRKTLRNTLKAL-------LSSAEIEAAGVDGSLRPEQLDLAAF 254
>sp|Q83MG8|RSMA_SHIFL Ribosomal RNA small subunit methyltransferase A OS=Shigella
flexneri GN=rsmA PE=3 SV=1
Length = 273
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDI 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|B1JKY3|RSMA_YERPY Ribosomal RNA small subunit methyltransferase A OS=Yersinia
pseudotuberculosis serotype O:3 (strain YPIII) GN=rsmA
PE=3 SV=1
Length = 272
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RL++M Q +CNV +P AF P P+VD VV P V HP+ D+
Sbjct: 148 LVAGPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
+++ R+ + F R+K V LF + L+E + PILR +SV ++
Sbjct: 208 --RMLSRITTQAFNQRRKTVRNSLGDLFTSEQ------LIELG-IDPILRAENISVAQY 257
>sp|Q66EQ8|RSMA_YERPS Ribosomal RNA small subunit methyltransferase A OS=Yersinia
pseudotuberculosis serotype I (strain IP32953) GN=rsmA
PE=3 SV=1
Length = 272
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RL++M Q +CNV +P AF P P+VD VV P V HP+ D+
Sbjct: 148 LVAGPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
+++ R+ + F R+K V LF + L+E + PILR +SV ++
Sbjct: 208 --RMLSRITTQAFNQRRKTVRNSLGDLFTSEQ------LIELG-IDPILRAENISVAQY 257
>sp|B2K487|RSMA_YERPB Ribosomal RNA small subunit methyltransferase A OS=Yersinia
pseudotuberculosis serotype IB (strain PB1/+) GN=rsmA
PE=3 SV=1
Length = 272
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RL++M Q +CNV +P AF P P+VD VV P V HP+ D+
Sbjct: 148 LVAGPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
+++ R+ + F R+K V LF + L+E + PILR +SV ++
Sbjct: 208 --RMLSRITTQAFNQRRKTVRNSLGDLFTSEQ------LIELG-IDPILRAENISVAQY 257
>sp|A7FMC1|RSMA_YERP3 Ribosomal RNA small subunit methyltransferase A OS=Yersinia
pseudotuberculosis serotype O:1b (strain IP 31758)
GN=rsmA PE=3 SV=1
Length = 272
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RL++M Q +CNV +P AF P P+VD VV P V HP+ D+
Sbjct: 148 LVAGPNSKAYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
+++ R+ + F R+K V LF + L+E + PILR +SV ++
Sbjct: 208 --RMLSRITTQAFNQRRKTVRNSLGDLFTSEQ------LIELG-IDPILRAENISVAQY 257
>sp|B7N7S6|RSMA_ECOLU Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 14/134 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC--LAYRDMCEE 129
Q+ LA + +E
Sbjct: 259 QMANYLAENALLQE 272
>sp|A4TQD8|RSMA_YERPP Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis
(strain Pestoides F) GN=rsmA PE=3 SV=1
Length = 272
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RL++M Q +CNV +P AF P P+VD VV P V HP+ D+
Sbjct: 148 LVAGPNSKTYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
+++ R+ + F R+K V LF + L+E + PILR +SV ++
Sbjct: 208 --RMLSRITTQAFNQRRKTVRNSLGDLFTSEQ------LIELG-IDPILRAENISVAQY 257
>sp|Q1CMT2|RSMA_YERPN Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis
bv. Antiqua (strain Nepal516) GN=rsmA PE=3 SV=1
Length = 272
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RL++M Q +CNV +P AF P P+VD VV P V HP+ D+
Sbjct: 148 LVAGPNSKTYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
+++ R+ + F R+K V LF + L+E + PILR +SV ++
Sbjct: 208 --RMLSRITTQAFNQRRKTVRNSLGDLFTSEQ------LIELG-IDPILRAENISVAQY 257
>sp|A9QZZ0|RSMA_YERPG Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis
bv. Antiqua (strain Angola) GN=rsmA PE=3 SV=1
Length = 272
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RL++M Q +CNV +P AF P P+VD VV P V HP+ D+
Sbjct: 148 LVAGPNSKTYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
+++ R+ + F R+K V LF + L+E + PILR +SV ++
Sbjct: 208 --RMLSRITTQAFNQRRKTVRNSLGDLFTSEQ------LIELG-IDPILRAENISVAQY 257
>sp|Q8ZIK5|RSMA_YERPE Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis
GN=rsmA PE=3 SV=1
Length = 272
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RL++M Q +CNV +P AF P P+VD VV P V HP+ D+
Sbjct: 148 LVAGPNSKTYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
+++ R+ + F R+K V LF + L+E + PILR +SV ++
Sbjct: 208 --RMLSRITTQAFNQRRKTVRNSLGDLFTSEQ------LIELG-IDPILRAENISVAQY 257
>sp|Q1C0H5|RSMA_YERPA Ribosomal RNA small subunit methyltransferase A OS=Yersinia pestis
bv. Antiqua (strain Antiqua) GN=rsmA PE=3 SV=1
Length = 272
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 59/119 (49%), Gaps = 12/119 (10%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RL++M Q +CNV +P AF P P+VD VV P V HP+ D+
Sbjct: 148 LVAGPNSKTYGRLTVMAQYYCNVIPVLEVPPTAFTPAPKVDSAVVRLIPHVQMPHPVGDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEF 116
+++ R+ + F R+K V LF + L+E + PILR +SV ++
Sbjct: 208 --RMLSRITTQAFNQRRKTVRNSLGDLFTSEQ------LIELG-IDPILRAENISVAQY 257
>sp|Q3Z5V8|RSMA_SHISS Ribosomal RNA small subunit methyltransferase A OS=Shigella sonnei
(strain Ss046) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|Q0T8E4|RSMA_SHIF8 Ribosomal RNA small subunit methyltransferase A OS=Shigella
flexneri serotype 5b (strain 8401) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|Q326I2|RSMA_SHIBS Ribosomal RNA small subunit methyltransferase A OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|B1LFY7|RSMA_ECOSM Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|B6HZ32|RSMA_ECOSE Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
(strain SE11) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|P06992|RSMA_ECOLI Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
(strain K12) GN=rsmA PE=1 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|B1IRC5|RSMA_ECOLC Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|A7ZW03|RSMA_ECOHS Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
O9:H4 (strain HS) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|B1XC52|RSMA_ECODH Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
(strain K12 / DH10B) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|C4ZPX7|RSMA_ECOBW Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|B7M0E8|RSMA_ECO8A Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
O8 (strain IAI1) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|B7NHF7|RSMA_ECO7I Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|A7ZHE4|RSMA_ECO24 Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|Q1RGE6|RSMA_ECOUT Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|Q8FL96|RSMA_ECOL6 Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmA PE=3
SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|Q0TLT6|RSMA_ECOL5 Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
O6:K15:H31 (strain 536 / UPEC) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|A1A7A0|RSMA_ECOK1 Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
O1:K1 / APEC GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
>sp|B7MAH6|RSMA_ECO45 Ribosomal RNA small subunit methyltransferase A OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmA PE=3 SV=1
Length = 273
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 12/123 (9%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRV---HPIIDL 57
++A + RLS+M Q +CNV +P AF P P+VD VV P HP+ D+
Sbjct: 148 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 207
Query: 58 PFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFG 117
+++ R+ + F R+K + LF V +L + P +R +SV ++
Sbjct: 208 --RVLSRITTEAFNQRRKTIRNSLGNLFS-------VEVLTGMGIDPAMRAENISVAQYC 258
Query: 118 QIC 120
Q+
Sbjct: 259 QMA 261
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.142 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,348,869
Number of Sequences: 539616
Number of extensions: 2762166
Number of successful extensions: 6880
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 106
Number of HSP's that attempted gapping in prelim test: 6297
Number of HSP's gapped (non-prelim): 594
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)