Query psy13718
Match_columns 165
No_of_seqs 131 out of 1032
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 18:42:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13718.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13718hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqs_A Ribosomal RNA small sub 100.0 7.2E-34 2.5E-38 233.8 11.2 116 1-123 138-254 (255)
2 3fut_A Dimethyladenosine trans 100.0 2.5E-33 8.7E-38 232.7 12.9 118 1-124 151-268 (271)
3 3uzu_A Ribosomal RNA small sub 100.0 1.2E-33 4.2E-38 235.2 9.6 118 1-125 156-274 (279)
4 1qyr_A KSGA, high level kasuga 100.0 2.2E-32 7.6E-37 224.4 13.3 118 1-125 132-250 (252)
5 3gru_A Dimethyladenosine trans 100.0 2.3E-31 7.9E-36 223.3 8.4 129 1-129 154-291 (295)
6 3ftd_A Dimethyladenosine trans 100.0 6.7E-30 2.3E-34 209.0 11.0 106 7-124 140-245 (249)
7 1i4w_A Mitochondrial replicati 99.9 4.2E-28 1.4E-32 208.3 6.4 119 1-125 192-332 (353)
8 1zq9_A Probable dimethyladenos 99.9 8.7E-25 3E-29 181.1 12.6 122 2-125 136-279 (285)
9 2h1r_A Dimethyladenosine trans 99.9 5.9E-24 2E-28 177.3 11.8 124 1-126 148-292 (299)
10 1qam_A ERMC' methyltransferase 99.9 5.3E-24 1.8E-28 172.6 8.6 103 11-126 140-242 (244)
11 1yub_A Ermam, rRNA methyltrans 99.8 3.1E-19 1.1E-23 143.8 5.1 106 11-129 139-244 (245)
12 3r8n_M 30S ribosomal protein S 93.9 0.16 5.4E-06 36.6 6.3 50 73-123 10-59 (114)
13 3u6p_A Formamidopyrimidine-DNA 92.8 0.47 1.6E-05 38.7 8.4 67 67-136 148-219 (273)
14 1ee8_A MUTM (FPG) protein; bet 92.6 0.38 1.3E-05 39.1 7.4 69 69-140 138-211 (266)
15 3j20_O 30S ribosomal protein S 92.6 0.23 7.9E-06 37.3 5.6 52 73-125 17-68 (148)
16 2xzf_A Formamidopyrimidine-DNA 92.5 0.45 1.6E-05 38.7 7.8 67 68-137 147-218 (271)
17 3twl_A Formamidopyrimidine-DNA 92.4 0.43 1.5E-05 39.7 7.7 60 68-130 162-226 (310)
18 3iz6_M 40S ribosomal protein S 92.3 0.26 9E-06 37.2 5.7 50 73-123 22-71 (152)
19 2xzm_M RPS18E; ribosome, trans 92.1 0.32 1.1E-05 36.8 5.9 52 73-125 24-75 (155)
20 1k82_A Formamidopyrimidine-DNA 92.0 0.43 1.5E-05 38.8 7.1 70 68-140 144-218 (268)
21 2vqe_M 30S ribosomal protein S 91.9 0.19 6.4E-06 36.9 4.4 52 73-125 11-62 (126)
22 3u5c_S 40S ribosomal protein S 91.6 0.27 9.1E-06 36.9 4.9 50 73-123 24-73 (146)
23 1k3x_A Endonuclease VIII; hydr 91.3 0.43 1.5E-05 38.6 6.4 64 74-140 150-218 (262)
24 3vk8_A Probable formamidopyrim 84.8 1.7 5.7E-05 35.9 5.9 57 70-129 150-212 (295)
25 3w0f_A Endonuclease 8-like 3; 83.8 4.9 0.00017 33.1 8.3 56 70-128 169-230 (287)
26 2gqf_A Hypothetical protein HI 80.1 3.9 0.00013 34.3 6.5 57 66-126 271-328 (401)
27 2i0z_A NAD(FAD)-utilizing dehy 75.6 10 0.00036 31.8 8.0 66 58-126 303-369 (447)
28 3v76_A Flavoprotein; structura 73.3 8.9 0.0003 32.4 7.0 57 66-126 290-347 (417)
29 1mu5_A Type II DNA topoisomera 65.5 11 0.00037 32.9 5.9 65 62-126 239-304 (471)
30 3p9a_A DNA-packaging protein G 46.1 15 0.0005 27.8 3.0 34 105-138 17-50 (162)
31 2zbk_B Type 2 DNA topoisomeras 45.0 61 0.0021 28.6 7.3 65 62-126 238-303 (530)
32 1yu8_X Villin; alpha helix, 3- 42.3 13 0.00045 24.0 1.9 33 100-132 22-54 (67)
33 1tdh_A NEI endonuclease VIII-l 39.0 13 0.00044 31.6 1.9 55 73-130 157-236 (364)
34 2k6m_S Supervillin; SVHP, HP, 37.6 10 0.00035 24.5 0.8 33 100-132 22-54 (67)
35 2cmx_A ORF F-112, F112, hypoth 35.4 30 0.001 24.3 3.0 51 110-160 40-95 (118)
36 1qzp_A Dematin; villin headpie 33.8 11 0.00037 24.4 0.5 33 100-132 23-55 (68)
37 3rm1_A Protein S100-B; alpha-h 33.1 94 0.0032 19.7 5.9 36 91-129 52-87 (92)
38 3bbn_M Ribosomal protein S13; 32.8 2.9 9.9E-05 31.2 -2.8 48 73-122 56-103 (145)
39 1ujs_A Actin-binding LIM prote 28.3 17 0.00057 24.8 0.7 34 100-133 37-70 (88)
40 4fqn_A Malcavernin; helical do 27.4 1.5E+02 0.0051 20.4 5.4 45 59-103 50-94 (98)
41 2eo2_A Adult MALE hypothalamus 24.9 72 0.0025 20.8 3.2 32 95-132 35-66 (71)
42 3hf5_A 4-methylmuconolactone m 22.6 74 0.0025 22.1 3.3 36 105-140 17-52 (116)
No 1
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=100.00 E-value=7.2e-34 Score=233.79 Aligned_cols=116 Identities=29% Similarity=0.474 Sum_probs=106.3
Q ss_pred CcccCCCCCCcHHHHHHHhhhcceEeceecCCCCcCCCCccEEEEEEEec-CCCCCCCCHHHHHHHHHHHhhCcCcchHH
Q psy13718 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPR-VHPIIDLPFKLIERVVSCIFRYRQKQVYK 79 (165)
Q Consensus 1 l~A~pgtk~Yg~LSV~~q~~~dv~~l~~V~~~~F~P~PkVdSavv~l~pr-~~~~~~~~~~~f~~~vr~~F~~RRKtL~n 79 (165)
|+|+|||++||+|||++|+||+++++++||+++|+|+|||||+||+|+|+ +.+....+.+.|+.+++++|+||||||+|
T Consensus 138 l~a~pg~k~yg~lsv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~~~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~~ 217 (255)
T 3tqs_A 138 ITAEVGSHDYGRLSVMAQYFCDNTYLFTVSPQAFTPPPRVESAIIRLIPRHNFTPVAKNLDQLSHVVKEAFSYRRKTVGN 217 (255)
T ss_dssp HTCCTTSTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCSCSSCCSCHHHHHHHHHHHHHSTTSCHHH
T ss_pred hhCCCCCCccchhhheeeeeEEEEEEEEEChHHccCCCCCeEEEEEEEECCCCCCccccHHHHHHHHHHHHHccChHHHH
Confidence 57999999999999999999999999999999999999999999999999 65433457889999999999999999999
Q ss_pred HHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHH
Q psy13718 80 PASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAY 123 (165)
Q Consensus 80 ~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l 123 (165)
+|+.+++. +.++++||+++.|||+||++||++|++.+
T Consensus 218 ~L~~~~~~-------~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~ 254 (255)
T 3tqs_A 218 ALKKLINP-------SQWPLLEINPQLRPQELTVEDFVKISNIL 254 (255)
T ss_dssp HTTTTCCG-------GGTGGGTCCTTSCGGGSCHHHHHHHHHHH
T ss_pred HHhhhCCH-------HHHHHCCcCCCCCceeCCHHHHHHHHHHh
Confidence 99998763 24688999999999999999999999876
No 2
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=100.00 E-value=2.5e-33 Score=232.69 Aligned_cols=118 Identities=20% Similarity=0.232 Sum_probs=108.4
Q ss_pred CcccCCCCCCcHHHHHHHhhhcceEeceecCCCCcCCCCccEEEEEEEecCCCCCCCCHHHHHHHHHHHhhCcCcchHHH
Q psy13718 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVVSCIFRYRQKQVYKP 80 (165)
Q Consensus 1 l~A~pgtk~Yg~LSV~~q~~~dv~~l~~V~~~~F~P~PkVdSavv~l~pr~~~~~~~~~~~f~~~vr~~F~~RRKtL~n~ 80 (165)
|+|+||+++||+|||++|+||+++++++||+++|+|+|||||+||+|+|++.+. .+.|+.+++++|+||||||+|+
T Consensus 151 l~A~pg~k~yg~lSv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~p~~~~~----~~~~~~~v~~~F~~rrKtL~n~ 226 (271)
T 3fut_A 151 MTARPKTPAYGVLTLRVAHHAVAERLFDLPPGAFFPPPKVWSSLVRLTPTGALD----DPGLFRLVEAAFGKRRKTLLNA 226 (271)
T ss_dssp HTCCTTSTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSCCC----CHHHHHHHHHHTSSTTSCHHHH
T ss_pred cccCCCCCcccHHHHHHHHHeeEEEEEEEChHHeECCCCCcEEEEEEEECCCCc----HHHHHHHHHHHHhcCCcHHHHH
Confidence 579999999999999999999999999999999999999999999999998653 4779999999999999999999
Q ss_pred HhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHH
Q psy13718 81 ASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYR 124 (165)
Q Consensus 81 L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~ 124 (165)
|+.+... ++.+.++|+++||+++.||++||++||++|++.+.
T Consensus 227 L~~~~~~--~~~~~~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~ 268 (271)
T 3fut_A 227 LAAAGYP--KARVEEALRALGLPPRVRAEELDLEAFRRLREGLE 268 (271)
T ss_dssp HHHTTCC--HHHHHHHHHHTTCCTTCCGGGCCHHHHHHHHHHHC
T ss_pred HHhhcCC--HHHHHHHHHHCCcCCCCChhhCCHHHHHHHHHHHH
Confidence 9987432 34678899999999999999999999999999874
No 3
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=100.00 E-value=1.2e-33 Score=235.25 Aligned_cols=118 Identities=22% Similarity=0.300 Sum_probs=107.8
Q ss_pred CcccCCCCCCcHHHHHHHhhhcceEeceecCCCCcCCCCccEEEEEEEecCCCC-CCCCHHHHHHHHHHHhhCcCcchHH
Q psy13718 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPI-IDLPFKLIERVVSCIFRYRQKQVYK 79 (165)
Q Consensus 1 l~A~pgtk~Yg~LSV~~q~~~dv~~l~~V~~~~F~P~PkVdSavv~l~pr~~~~-~~~~~~~f~~~vr~~F~~RRKtL~n 79 (165)
|+|+|||++||+|||++|+||+++++++||+++|+|+|||||+||+|+|++.+. ...+.+.|+.||+++|+||||||+|
T Consensus 156 l~A~pg~k~yg~lSv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~p~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~n 235 (279)
T 3uzu_A 156 MVAEPGTKAFSRLSVMLQYRYVMDKLIDVPPESFQPPPKVDSAIVRMIPHAPHELPAVDPAVLGEVVTAAFSQRRKMLRN 235 (279)
T ss_dssp HTCCTTSTTCCHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCGGGSCSSCHHHHHHHHHHHGGGTTSBHHH
T ss_pred HhCCCCCCcccHHHHHHhhheEEEEEEEEChHHccCCCCCeEEEEEEEecCCCCCCcccHHHHHHHHHHHHhccChHHHH
Confidence 589999999999999999999999999999999999999999999999997643 3347889999999999999999999
Q ss_pred HHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHH
Q psy13718 80 PASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 125 (165)
Q Consensus 80 ~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~ 125 (165)
+|+.+++. ++|+.+||+++.|+|+||++||++|++.+.+
T Consensus 236 ~L~~~~~~-------~~l~~~~i~~~~R~e~Ls~~~f~~L~~~~~~ 274 (279)
T 3uzu_A 236 TLGGYRDL-------VDFDALGFDLARRAEDIGVDEYVRVAQAVAS 274 (279)
T ss_dssp HTGGGTTT-------CCTTTTTCCTTSBGGGCCHHHHHHHHHHHHH
T ss_pred HHHhhcCH-------HHHHHCCcCCCCCceeCCHHHHHHHHHHHHH
Confidence 99998752 3578899999999999999999999998854
No 4
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=99.98 E-value=2.2e-32 Score=224.43 Aligned_cols=118 Identities=27% Similarity=0.466 Sum_probs=107.4
Q ss_pred CcccCCCCCCcHHHHHHHhhhcceEeceecCCCCcCCCCccEEEEEEEecCCCCCC-CCHHHHHHHHHHHhhCcCcchHH
Q psy13718 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIID-LPFKLIERVVSCIFRYRQKQVYK 79 (165)
Q Consensus 1 l~A~pgtk~Yg~LSV~~q~~~dv~~l~~V~~~~F~P~PkVdSavv~l~pr~~~~~~-~~~~~f~~~vr~~F~~RRKtL~n 79 (165)
|+|+||++.||+|||++|+||+++++++||+++|+|+|||||+||+|+|++.+... .+.+.|+.+|+++|+||||||+|
T Consensus 132 l~a~pG~k~yg~lsv~~q~~~~~~~~~~v~~~~F~P~PkV~Savv~l~~~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~n 211 (252)
T 1qyr_A 132 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRN 211 (252)
T ss_dssp HHCCTTSTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCSSCCSCHHHHHHHHHHHHHTTTSBHHH
T ss_pred hcCCCCCccccHHHHHHHHHheEEEEEEEChHHccCCCCceEEEEEEEEcCcCCCCccCHHHHHHHHHHHHHhCCcHHHH
Confidence 47999999999999999999999999999999999999999999999999874333 56788999999999999999999
Q ss_pred HHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHH
Q psy13718 80 PASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 125 (165)
Q Consensus 80 ~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~ 125 (165)
+|+.+++ .++++.+||+++.|+++||++||++|++.+..
T Consensus 212 ~l~~~~~-------~~~l~~~~i~~~~R~e~Ls~~~f~~l~~~~~~ 250 (252)
T 1qyr_A 212 SLGNLFS-------VEVLTGMGIDPAMRAENISVAQYCQMANYLAE 250 (252)
T ss_dssp HTTTTCC-------HHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHH
T ss_pred HHhhhhh-------HHHHHHcCCCCCCChHHCCHHHHHHHHHHHHh
Confidence 9998765 24688899999999999999999999998753
No 5
>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*
Probab=99.97 E-value=2.3e-31 Score=223.34 Aligned_cols=129 Identities=22% Similarity=0.310 Sum_probs=112.8
Q ss_pred CcccCCCCCCcHHHHHHHhhhcceEeceecCCCCcCCCCccEEEEEEEecCCCCCCCCHHHHHHHHHHHhhCcCcchHHH
Q psy13718 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVVSCIFRYRQKQVYKP 80 (165)
Q Consensus 1 l~A~pgtk~Yg~LSV~~q~~~dv~~l~~V~~~~F~P~PkVdSavv~l~pr~~~~~~~~~~~f~~~vr~~F~~RRKtL~n~ 80 (165)
|+|.||++.||+|||++|++|+++++++||+++|+|+|+|||+||+|+|++.+....+.+.|+.|++++|+||||||+|+
T Consensus 154 l~a~pg~k~yg~Lsv~~q~~~~~~~~~~v~~~~F~P~PkVdSavv~l~~~~~~~~~~~~~~~~~~v~~~F~~rrK~l~n~ 233 (295)
T 3gru_A 154 MVAAAGTKDYGRLSVAVQSRADVEIVAKVPPSAFYPKPKVYSAIVKIKPNKGKYHIENENFFDDFLRAIFQHRNKSVRKA 233 (295)
T ss_dssp HHCCTTSTTCSHHHHHHHTTEEEEEEEEECGGGEESCCSSCEEEEEEEECHHHHCCSCHHHHHHHHHHHHTTTTSBHHHH
T ss_pred EEecCCCcchhHHHHHHHhhccEEEEEEECcccCCCcCCCeEEEEEEEcCCCCCCcccHHHHHHHHHHHHccCchHHHHH
Confidence 57999999999999999999999999999999999999999999999998533223467889999999999999999999
Q ss_pred HhhhCCh--hHHHHHHHHHHHc-----CCCC--CCCccccCHHHHHHHHHHHHHHHhh
Q psy13718 81 ASLLFPK--RKRQLVVSLLERA-----CVKP--ILRPYQLSVQEFGQICLAYRDMCEE 129 (165)
Q Consensus 81 L~~~~~~--~~~~~~~~~L~~~-----gi~~--~~R~e~Ls~eqf~~L~~~l~~~~~~ 129 (165)
|+.++.. ..++.+.++|+.+ |+++ ++|||+||++||++|++.+.+.++.
T Consensus 234 L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~R~e~Ls~~~f~~L~~~~~~~~~~ 291 (295)
T 3gru_A 234 LIDSSKELNYNKDEMKKILEDFLNTNSEIKNLINEKVFKLSVKDIVNLSNEFYRFLQN 291 (295)
T ss_dssp HHHTGGGGTCCHHHHHHHHHHHHTTCHHHHHHHTSBGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhccccCCHHHHHHHHHHhhhcccCCCccccCChhhCCHHHHHHHHHHHHHhhhc
Confidence 9986421 1245677888888 7888 9999999999999999999877765
No 6
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=99.96 E-value=6.7e-30 Score=209.04 Aligned_cols=106 Identities=24% Similarity=0.377 Sum_probs=98.2
Q ss_pred CCCCcHHHHHHHhhhcceEeceecCCCCcCCCCccEEEEEEEecCCCCCCCCHHHHHHHHHHHhhCcCcchHHHHhhhCC
Q psy13718 7 MEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVVSCIFRYRQKQVYKPASLLFP 86 (165)
Q Consensus 7 tk~Yg~LSV~~q~~~dv~~l~~V~~~~F~P~PkVdSavv~l~pr~~~~~~~~~~~f~~~vr~~F~~RRKtL~n~L~~~~~ 86 (165)
+++||+|||++|+||+++++++||+++|+|+|+|||+||+|+|++.+... +.+.|+.|++++|+||||||+|+|+.+
T Consensus 140 ~k~yg~lsv~~q~~~~~~~~~~v~~~~F~P~PkV~savv~l~~~~~~~~~-~~~~~~~~v~~~F~~rrk~l~~~l~~~-- 216 (249)
T 3ftd_A 140 KKDTGWLSVFVRTFYDVNYVMTVPPRFFVPPPKVQSAVIKLVKNEKFPVK-DLKNYKKFLTKIFQNRRKVLRKKIPEE-- 216 (249)
T ss_dssp SSCCCHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECCCSCCC-CHHHHHHHHHHHHSSTTSCGGGTSCHH--
T ss_pred cccccHHHHHHHhHEEEEEEEEEChHHccCCCCCeEEEEEEEECCCCCcc-hHHHHHHHHHHHHhCcChhHHHHHHHH--
Confidence 89999999999999999999999999999999999999999999876433 378899999999999999999999765
Q ss_pred hhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHH
Q psy13718 87 KRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYR 124 (165)
Q Consensus 87 ~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~ 124 (165)
++..+||++++|||+||++||++|++.+.
T Consensus 217 ---------~l~~~~i~~~~r~e~l~~~~f~~l~~~~~ 245 (249)
T 3ftd_A 217 ---------LLKEAGINPDARVEQLSLEDFFKLYRLIE 245 (249)
T ss_dssp ---------HHHHTTCCTTCCGGGCCHHHHHHHHHHHH
T ss_pred ---------HHHHCCCCCCCChhhCCHHHHHHHHHHHH
Confidence 47889999999999999999999999874
No 7
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=99.94 E-value=4.2e-28 Score=208.26 Aligned_cols=119 Identities=15% Similarity=0.186 Sum_probs=102.3
Q ss_pred CcccCCCCCCcHHHHHHHhhhcceEeceec---CCCCcCCC----------Cc--------cEEEEEEEecCCCCCCCCH
Q psy13718 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIP---GKAFIPKP----------QV--------DVGVVHFTPRVHPIIDLPF 59 (165)
Q Consensus 1 l~A~pgtk~Yg~LSV~~q~~~dv~~l~~V~---~~~F~P~P----------kV--------dSavv~l~pr~~~~~~~~~ 59 (165)
|+|+||+++||+|||++|++|++++++.|+ +++|+|+| || |||||+|+|++. ..+.
T Consensus 192 l~A~PGsk~yg~LSV~~q~~~~v~~l~~v~~~~~~~F~P~P~~k~~p~~~PkV~~~~~~~~dSaVV~l~p~~~---~~~~ 268 (353)
T 1i4w_A 192 LLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKGKPIALVEMDPIDF---DFDV 268 (353)
T ss_dssp HHCCTTSTTCCHHHHHHHHHEEEEEEEESCGGGGGGSCHHHHHHHCCEECCGGGBSSCSCCCEEEEEEEECCC---CSCH
T ss_pred hcCCCCCccccHHHHHHHHHcceEEEEecCCccCCCccCCCcccccccccCcccccCCCCCceEEEEEEECCC---cccH
Confidence 579999999999999999999999999999 99999998 99 999999999875 2467
Q ss_pred HHHHHHHHHHhhCcCcchHHHHhhhCChhHHHHHHHHHH-HcCCCCCCCccccCHHHHHHHHHHHHH
Q psy13718 60 KLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLE-RACVKPILRPYQLSVQEFGQICLAYRD 125 (165)
Q Consensus 60 ~~f~~~vr~~F~~RRKtL~n~L~~~~~~~~~~~~~~~L~-~~gi~~~~R~e~Ls~eqf~~L~~~l~~ 125 (165)
+.|+.+|+++|+||||||+|+|+.+++.. .+.+.+.|. .+|+ ++|+++||++||++|++.+.+
T Consensus 269 ~~~~~vvr~~F~qRRKtL~n~L~~l~~~~-~~~l~~~l~~~~~i--~~R~e~Ls~e~f~~L~~~~~~ 332 (353)
T 1i4w_A 269 DNWDYVTRHLMILKRTPLNTVMDSLGHGG-QQYFNSRITDKDLL--KKCPIDLTNDEFIYLTKLFME 332 (353)
T ss_dssp HHHHHHHHHHHTTTTSCTTTGGGGSSTTH-HHHHTTTCCCCTTT--SSCGGGCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhchHHHHHHHHhhcccc-HHHHHHHhhhhcCc--ccChhhCCHHHHHHHHHHHHh
Confidence 78999999999999999999999876531 112333333 5666 699999999999999999854
No 8
>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24
Probab=99.92 E-value=8.7e-25 Score=181.07 Aligned_cols=122 Identities=22% Similarity=0.361 Sum_probs=105.4
Q ss_pred cccCCCCCCcHHHHHHHhhhcceEeceecCCCCcCCCCccEEEEEEEecCCCCCCCCHHHHHHHHHHHhhCcCcchHHHH
Q psy13718 2 IATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVVSCIFRYRQKQVYKPA 81 (165)
Q Consensus 2 ~A~pgtk~Yg~LSV~~q~~~dv~~l~~V~~~~F~P~PkVdSavv~l~pr~~~~~~~~~~~f~~~vr~~F~~RRKtL~n~L 81 (165)
+++||++.||++|+++|++++++.++.|++++|+|+|+|||+||++.|+..+. ..+.+.|..+++++|++|||+|+|+|
T Consensus 136 vlkPGg~~y~~lsv~~~~~~~~~~~~~v~~~~F~P~p~v~savv~~~~~~~~~-~~~~~~~~~~~~~~F~~rrK~l~~~l 214 (285)
T 1zq9_A 136 VAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPKNPPP-PINFQEWDGLVRITFVRKNKTLSAAF 214 (285)
T ss_dssp HCCTTCTTCSHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECSSCC-SCCHHHHHHHHHHHHTTTTSBHHHHT
T ss_pred hcCCCCcccchhhhhhhhhhheeeeEEEChhhCCCCCCCcEEEEEEEECCCCC-CCCHHHHHHHHHHHHhcchhHHHHHh
Confidence 67999999999999999999999999999999999999999999999987642 34677899999999999999999999
Q ss_pred hhh-------------C-------Ch--hHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHH
Q psy13718 82 SLL-------------F-------PK--RKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 125 (165)
Q Consensus 82 ~~~-------------~-------~~--~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~ 125 (165)
+.. + +. ..++.+.++|+.+||+ ++|+|+||++||++|++.+.+
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~R~e~l~~~~f~~l~~~~~~ 279 (285)
T 1zq9_A 215 KSSAVQQLLEKNYRIHCSVHNIIIPEDFSIADKIQQILTSTGFS-DKRARSMDIDDFIRLLHGFNA 279 (285)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTCCCCTTCCHHHHHHHHHHHHTCT-TCBGGGCCHHHHHHHHHHHHT
T ss_pred chhcchhhhhhhhhhhhhhcccccccchhhHHHHHHHHHhCCCC-CCChhhCCHHHHHHHHHHHHH
Confidence 741 0 10 0134567889999998 889999999999999998753
No 9
>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}
Probab=99.90 E-value=5.9e-24 Score=177.29 Aligned_cols=124 Identities=20% Similarity=0.321 Sum_probs=106.6
Q ss_pred CcccCCCCCCcHHHHHHHhhhcceEeceecCCCCcCCCCccEEEEEEEecCCCCCCCCHHHHHHHHHHHhhCcCcchHHH
Q psy13718 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVVSCIFRYRQKQVYKP 80 (165)
Q Consensus 1 l~A~pgtk~Yg~LSV~~q~~~dv~~l~~V~~~~F~P~PkVdSavv~l~pr~~~~~~~~~~~f~~~vr~~F~~RRKtL~n~ 80 (165)
|+|.||++.||.||+.+|++++++.++.|++++|.|+|+|||+||++.|+..+. ..+.+.|..+++.+|++|||||+|+
T Consensus 148 lla~~G~~~y~~ls~~~~~~~~~~~~~~v~~~~F~p~p~V~s~vv~~~~~~~~~-~~~~~~~~~~v~~~F~~rrKtl~~~ 226 (299)
T 2h1r_A 148 MLANVGDSNYSRLTINVKLFCKVTKVCNVNRSSFNPPPKVDSVIVKLIPKESSF-LTNFDEWDNLLRICFSRKRKTLHAI 226 (299)
T ss_dssp HTCCTTSTTCCHHHHHHHHHEEEEEEEEECGGGEESCCSSCEEEEEEEECGGGG-GSCHHHHHHHHHHHHTTTTSBHHHH
T ss_pred HhcCCCCcchhHHHHHHHHhhceEEEEEECchhcCCCCCCEEEEEEEEECCCCC-CCCHHHHHHHHHHHHhhcchHHHHH
Confidence 468899999999999999999999999999999999999999999999987542 3467789999999999999999999
Q ss_pred HhhhC-------------------Ch--hHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHH
Q psy13718 81 ASLLF-------------------PK--RKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDM 126 (165)
Q Consensus 81 L~~~~-------------------~~--~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~ 126 (165)
|+... +. +.++.+.++|+.+|+++ .|+|+||++||++|++.+.++
T Consensus 227 l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~-~R~e~l~~~~f~~l~~~~~~~ 292 (299)
T 2h1r_A 227 FKRNAVLNMLEHNYKNWCTLNKQVPVNFPFKKYCLDVLEHLDMCE-KRSINLDENDFLKLLLEFNKK 292 (299)
T ss_dssp HTSHHHHHHHHHHHHHHHHHTTCCCCSSCHHHHHHHHHHHTTCTT-CBGGGCCHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhcccccccccccchHHHHHHHHHhCCCCC-CChhhCCHHHHHHHHHHHHhC
Confidence 97421 10 12345678899999985 899999999999999988654
No 10
>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A
Probab=99.90 E-value=5.3e-24 Score=172.64 Aligned_cols=103 Identities=14% Similarity=0.171 Sum_probs=92.0
Q ss_pred cHHHHHHHhhhcceEeceecCCCCcCCCCccEEEEEEEecCCCCCCCCHHHHHHHHHHHhhCcCcchHHHHhhhCChhHH
Q psy13718 11 CRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVVSCIFRYRQKQVYKPASLLFPKRKR 90 (165)
Q Consensus 11 g~LSV~~q~~~dv~~l~~V~~~~F~P~PkVdSavv~l~pr~~~~~~~~~~~f~~~vr~~F~~RRKtL~n~L~~~~~~~~~ 90 (165)
|+||+++|++++++.++.|++++|+|+|+|||+||+++|++.+....+.+.|+.+++++|+||||||+|++.
T Consensus 140 G~l~v~~~~~~~~~~~~~v~~~~F~P~p~v~s~vv~~~~~~~~~~~~~~~~~~~~v~~~F~~rrk~l~~~~~-------- 211 (244)
T 1qam_A 140 RSLALFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKKSRISHKDKQKYNYFVMKWVNKEYKKIFTKNQ-------- 211 (244)
T ss_dssp SHHHHHHTTTEEEEEEEEECGGGSBSCCSSCEEEEEEEECCCSSCGGGHHHHHHHHHHHHTTCGGGTCCHHH--------
T ss_pred cchhHHhhhhEeEEEEEEEChhhccCCCCceEEEEEEEECCCCCCcccHHHHHHHHHHHHhhccccccchHH--------
Confidence 899999999999999999999999999999999999999765332346788999999999999999999872
Q ss_pred HHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHH
Q psy13718 91 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDM 126 (165)
Q Consensus 91 ~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~ 126 (165)
+++.+|++++.|+|+||++||++|++.+..|
T Consensus 212 -----~~~~~~~~~~~r~e~l~~~~~~~l~~~~~~~ 242 (244)
T 1qam_A 212 -----FNNSLKHAGIDDLNNISFEQFLSLFNSYKLF 242 (244)
T ss_dssp -----HHHHHHHHTCSCTTSCCHHHHHHHHHHHHHH
T ss_pred -----HHHHCCCCCCCCceeCCHHHHHHHHHHHHHh
Confidence 2456788899999999999999999998776
No 11
>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24
Probab=99.76 E-value=3.1e-19 Score=143.75 Aligned_cols=106 Identities=15% Similarity=0.229 Sum_probs=92.4
Q ss_pred cHHHHHHHhhhcceEeceecCCCCcCCCCccEEEEEEEecCCCCCCCCHHHHHHHHHHHhhCcCcchHHHHhhhCChhHH
Q psy13718 11 CRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVVSCIFRYRQKQVYKPASLLFPKRKR 90 (165)
Q Consensus 11 g~LSV~~q~~~dv~~l~~V~~~~F~P~PkVdSavv~l~pr~~~~~~~~~~~f~~~vr~~F~~RRKtL~n~L~~~~~~~~~ 90 (165)
|+|++.++.++++++++.|+++.|.|+|+|||++|++++++......+...|..+++.+|++|||+|+|+++
T Consensus 139 G~l~v~~~~~~~~~~~~~v~~~~f~P~p~v~s~~v~~~~~~~~~~~~~~~~~~~~~~~~f~~rrk~l~~~~~-------- 210 (245)
T 1yub_A 139 RTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFVSKWVNREYRQLFTKNQ-------- 210 (245)
T ss_dssp GSHHHHTTTTBCCCEEEEECCTTSBSSCCSCEEEEEECBCSCSSCHHHHHHHHHHHHHHHHTCHHHHCSSSH--------
T ss_pred CchhhhheeheeEEEEEEECchhccCCCCceEEEEEEEECCCCCCcccHHHHHHHHHHHHhhcchhhhchHH--------
Confidence 789999999999999999999999999999999999998653322224567999999999999999999772
Q ss_pred HHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHhh
Q psy13718 91 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE 129 (165)
Q Consensus 91 ~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~ 129 (165)
+++.+|+++..|+++|+++||++|++.+..|+++
T Consensus 211 -----~~~~~~~~~~~r~~~l~~~~f~~l~~~~~~~~~~ 244 (245)
T 1yub_A 211 -----FHQAMKHAKVNNLSTITYEQVLSIFNSYLLFNGR 244 (245)
T ss_dssp -----HHHHHHHTTCSCTTSCCSHHHHHHHHHHHHHTTC
T ss_pred -----HHHHcCCCCCCChhhCCHHHHHHHHHHHHHhcCC
Confidence 2455677889999999999999999999998875
No 12
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=93.87 E-value=0.16 Score=36.62 Aligned_cols=50 Identities=10% Similarity=0.079 Sum_probs=40.8
Q ss_pred cCcchHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHH
Q psy13718 73 RQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAY 123 (165)
Q Consensus 73 RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l 123 (165)
.+|.+.-+|..+++-. ...+..++..+||++++|+.+|+.+|+..|-+.+
T Consensus 10 ~~k~v~~aLt~I~GIG-~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 10 DHKHAVIALTSIYGVG-KTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp CSSCHHHHGGGSTTCC-HHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHH
T ss_pred CCCEeHhhHhhhcCcC-HHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHH
Confidence 3677788888776532 2357788999999999999999999999988777
No 13
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=92.84 E-value=0.47 Score=38.69 Aligned_cols=67 Identities=16% Similarity=-0.073 Sum_probs=50.6
Q ss_pred HHHhhCcCcchHHHHhhh-----CChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHhhCCCccce
Q psy13718 67 SCIFRYRQKQVYKPASLL-----FPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEY 136 (165)
Q Consensus 67 r~~F~~RRKtL~n~L~~~-----~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~p~~~~~ 136 (165)
...+..+++.|+..|..- .++. ...++|=.+||.|..++.+|+.+++.+|++.+.+.+.++=..++.
T Consensus 148 ~~~l~~~~~~IK~~LlDQ~~vaGiGNi---Ya~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~ 219 (273)
T 3u6p_A 148 AERAVKTKRSVKALLLDCTVVAGFGNI---YVDESLFRAGILPGRPAASLSSKEIERLHEEMVATIGEAVMKGGS 219 (273)
T ss_dssp HHHHHTCCSBHHHHHHCTTTSTTCCHH---HHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHhcCcchHHHHHhcCCccccccHH---HHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 345566899999998752 2322 466888999999999999999999999999999888775444433
No 14
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=92.55 E-value=0.38 Score=39.14 Aligned_cols=69 Identities=19% Similarity=0.089 Sum_probs=55.1
Q ss_pred HhhCcCcchHHHHhhh-----CChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHhhCCCccceeccC
Q psy13718 69 IFRYRQKQVYKPASLL-----FPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 140 (165)
Q Consensus 69 ~F~~RRKtL~n~L~~~-----~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~p~~~~~~~~~ 140 (165)
.++.+++.|+..|..- .++. ...++|=.+||+|..++.+|+.+++.+|++.+.+.+.++=..++.+.++
T Consensus 138 ~l~~~~~~IK~~LlDQ~~vaGiGNi---Ya~EiLf~a~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~d 211 (266)
T 1ee8_A 138 GLKESARPLKALLLDQRLAAGVGNI---YADEALFRARLSPFRPARSLTEEEARRLYRALREVLAEAVELGGSTLSD 211 (266)
T ss_dssp HHHTCCSBHHHHHHHSSSSTTCCHH---HHHHHHHHTTCCSSSBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCSS
T ss_pred HHhcCCccHHHHHhccCccccccHh---HHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 3477899999998752 2332 4678899999999999999999999999999999887766666555554
No 15
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.55 E-value=0.23 Score=37.34 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=41.8
Q ss_pred cCcchHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHH
Q psy13718 73 RQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 125 (165)
Q Consensus 73 RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~ 125 (165)
.+|.+.-+|..+++-. ...+..+++.+||++++|+.+||.+|...|-..+.+
T Consensus 17 ~~k~v~~aLt~I~GIG-~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 17 GNKQLRWALTAIKGIG-INFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILAD 68 (148)
T ss_dssp CSSCHHHHHHHSTTCC-HHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHC
T ss_pred CCCEehhhhhhccCcC-HHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhc
Confidence 3567788887776532 236778899999999999999999999999887754
No 16
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=92.48 E-value=0.45 Score=38.69 Aligned_cols=67 Identities=13% Similarity=-0.020 Sum_probs=52.5
Q ss_pred HHhhCcCcchHHHHhhh-----CChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHhhCCCcccee
Q psy13718 68 CIFRYRQKQVYKPASLL-----FPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYT 137 (165)
Q Consensus 68 ~~F~~RRKtL~n~L~~~-----~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~p~~~~~~ 137 (165)
..++.+++.|+..|..- .++. ...++|=.+||.|..++.+|+.+++.+|+..+.+.+.++=..++-+
T Consensus 147 ~~l~~~~~~IK~~LLDQ~vvaGiGNi---YadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t 218 (271)
T 2xzf_A 147 EKLRKSTKKIKPYLLEQTLVAGLGNI---YVDEVLWLAKIHPEKETNQLIESSIHLLHDSIIEILQKAIKLGGSS 218 (271)
T ss_dssp HHHHTCCSBHHHHHHTSSSSSCCCHH---HHHHHHHHTTCCTTCBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHhcCCccHHHHHhcCCeecccChh---HHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 34577899999998752 2332 5678899999999999999999999999999998877654444433
No 17
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A
Probab=92.37 E-value=0.43 Score=39.71 Aligned_cols=60 Identities=10% Similarity=0.097 Sum_probs=48.7
Q ss_pred HHhhCcCcchHHHHhhh-----CChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHhhC
Q psy13718 68 CIFRYRQKQVYKPASLL-----FPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEM 130 (165)
Q Consensus 68 ~~F~~RRKtL~n~L~~~-----~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~ 130 (165)
..+..+++.|+..|..- .++. ...++|=.+||.|..++.+|+.+++.+|++.+.+.+.++
T Consensus 162 ~~l~~~~~~IK~~LLDQ~vvaGIGNi---YadEiLf~AgIhP~~~a~~Ls~~e~~~L~~~i~~vL~~a 226 (310)
T 3twl_A 162 ESLAKKKITIKPLLLDQGYISGIGNW---IADEVLYQARIHPLQTASSLSKEQCEALHTSIKEVIEKA 226 (310)
T ss_dssp HHHHTCCSBHHHHHHCTTTSBSCCHH---HHHHHHHHTTCCTTSBGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcchHHHHHhcCccccCCcHH---HHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 34467899999998752 3332 567888999999999999999999999999998877664
No 18
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=92.32 E-value=0.26 Score=37.19 Aligned_cols=50 Identities=12% Similarity=0.115 Sum_probs=40.3
Q ss_pred cCcchHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHH
Q psy13718 73 RQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAY 123 (165)
Q Consensus 73 RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l 123 (165)
.+|.+.-+|..+++-. ...+..+++.+||++++|+.+||.+|...|-..+
T Consensus 22 ~~k~v~~ALt~I~GIG-~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 71 (152)
T 3iz6_M 22 GKQKIMFALTSIKGVG-RRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVV 71 (152)
T ss_dssp CSSBHHHHHTTSTTCC-HHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHH
T ss_pred CCcEeHhhhhhccCcC-HHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHH
Confidence 4677888888876532 2367788999999999999999999999986654
No 19
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=92.06 E-value=0.32 Score=36.83 Aligned_cols=52 Identities=12% Similarity=0.033 Sum_probs=41.7
Q ss_pred cCcchHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHH
Q psy13718 73 RQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 125 (165)
Q Consensus 73 RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~ 125 (165)
..|.+.-+|..+++-. ...+..++..+||++++|+.+||.+|+..|-..+.+
T Consensus 24 ~~k~v~~aLt~I~GIG-~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 24 GKRITPIALTGIRGIG-RRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIAD 75 (155)
T ss_dssp CSSCHHHHHTTSTTCC-HHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHS
T ss_pred CCCEEEEeeecccccC-HHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhC
Confidence 3566777887776532 236778899999999999999999999999887764
No 20
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=91.97 E-value=0.43 Score=38.82 Aligned_cols=70 Identities=13% Similarity=-0.065 Sum_probs=54.5
Q ss_pred HHhhCcCcchHHHHhhh-----CChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHhhCCCccceeccC
Q psy13718 68 CIFRYRQKQVYKPASLL-----FPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 140 (165)
Q Consensus 68 ~~F~~RRKtL~n~L~~~-----~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~p~~~~~~~~~ 140 (165)
..++.+++.|+..|..- .++. ...++|=.+||.|..++.+|+.+++.+|+..+.+.+.++=..++-+.++
T Consensus 144 ~~l~~~~~~IK~~LlDQ~~vaGiGNi---Ya~EiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vL~~ai~~gg~t~~d 218 (268)
T 1k82_A 144 QKCAKKKTAIKPWLMDNKLVVGVGNI---YASESLFAAGIHPDRLASSLSLAECELLARVIKAVLLRSIEQGGTTLKD 218 (268)
T ss_dssp HHHTTCCSBHHHHHTCTTTCSSCCHH---HHHHHHHHHTCCTTSBGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCC-
T ss_pred HHHhcCCCcHHHHHhcCCeeeccCch---HHHHHHHHcCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence 34578899999998752 2332 4678899999999999999999999999999999887765555555443
No 21
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=91.95 E-value=0.19 Score=36.86 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=41.7
Q ss_pred cCcchHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHH
Q psy13718 73 RQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRD 125 (165)
Q Consensus 73 RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~ 125 (165)
..|.+.-+|..+++-. ...+..++..+||+++.|+.+||.+|+..|-..+.+
T Consensus 11 ~~k~v~~aLt~I~GIG-~~~A~~I~~~~gi~~~~r~~~Lt~~ei~~l~~~i~~ 62 (126)
T 2vqe_M 11 RNKRVDVALTYIYGIG-KARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN 62 (126)
T ss_dssp CSSBHHHHHTTSSSCC-SHHHHHHTTTTTCCTTSBGGGCCHHHHHHHHHHHHT
T ss_pred CCcEeeeehhcccccc-HHHHHHHHHHcCCCcccccCcCCHHHHHHHHHHHHH
Confidence 4677788888776532 235678899999999999999999999999887763
No 22
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=91.57 E-value=0.27 Score=36.93 Aligned_cols=50 Identities=14% Similarity=0.077 Sum_probs=40.0
Q ss_pred cCcchHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHH
Q psy13718 73 RQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAY 123 (165)
Q Consensus 73 RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l 123 (165)
.+|.+.-+|..+++-. ...+..+++.+||++++|+.+||.+|...|-..+
T Consensus 24 ~~k~v~~ALt~I~GIG-~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i 73 (146)
T 3u5c_S 24 GNIKIVYALTTIKGVG-RRYSNLVCKKADVDLHKRAGELTQEELERIVQIM 73 (146)
T ss_dssp SSSCTTTTGGGSTTCC-HHHHHHHHHHHTCCTTSCSSSCCHHHHHHHHHHH
T ss_pred CCcchHhhHhhhcCCC-HHHHHHHHHHcCCCCCceeccCCHHHHHHHHHHH
Confidence 4677788888776532 2367788999999999999999999999986655
No 23
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=91.29 E-value=0.43 Score=38.63 Aligned_cols=64 Identities=11% Similarity=-0.013 Sum_probs=48.8
Q ss_pred CcchHHHHhhh-----CChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHhhCCCccceeccC
Q psy13718 74 QKQVYKPASLL-----FPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 140 (165)
Q Consensus 74 RKtL~n~L~~~-----~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~p~~~~~~~~~ 140 (165)
++.|+..|..- .++. ...++|=.+||.|..++.+|+.+++.+|++.+...+...-..++-+.++
T Consensus 150 ~~~Ik~~LLDQ~vvaGiGNi---YadEiLf~a~I~P~~~a~~Ls~~~~~~L~~~i~~vl~~ai~~gGtt~~~ 218 (262)
T 1k3x_A 150 NRQFAGLLLDQAFLAGLGNY---LRVEILWQVGLTGNHKAKDLNAAQLDALAHALLEIPRFSYATRGQVDEN 218 (262)
T ss_dssp TSCHHHHTTCTTTSBTCCHH---HHHHHHHHHTCCSSCCGGGSCHHHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred cccHHHHHhcCCeeecccHH---HHHHHHHHcCCCcCCCcccCCHHHHHHHHHHHHHHHHHHHHhCCcccCC
Confidence 58999988642 2332 4678899999999999999999999999999999888877666655555
No 24
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A*
Probab=84.82 E-value=1.7 Score=35.87 Aligned_cols=57 Identities=16% Similarity=0.043 Sum_probs=46.8
Q ss_pred hhCcCcchHHHHhhh---C---ChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHhh
Q psy13718 70 FRYRQKQVYKPASLL---F---PKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE 129 (165)
Q Consensus 70 F~~RRKtL~n~L~~~---~---~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~ 129 (165)
+..+++.|+..|..- + ++. ...++|=.+||.|..++.+|+.+++.+|+..+.+.+.+
T Consensus 150 l~~~~~~Ik~~LLDQ~~~vaGIGNi---Ya~EiLf~A~I~P~~~~~~Ls~~~~~~L~~~i~~vL~~ 212 (295)
T 3vk8_A 150 IKKYKQPIVALLMDQKKIGSGLGNY---LVAEILYRAKIDPHKLGSNLTDQEIENLWYWIKYETKL 212 (295)
T ss_dssp GGGCCSBHHHHHHCSSSSCBCCCHH---HHHHHHHHTTBCTTCBGGGCCHHHHHHHHHHHHHHHHH
T ss_pred HhccCchHHHHHhcCCcccccccHH---HHHHHHHHcCCCccCccccCCHHHHHHHHHHHHHHHHH
Confidence 568899999988742 2 222 46688899999999999999999999999999988764
No 25
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=83.82 E-value=4.9 Score=33.10 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=44.1
Q ss_pred hhC-cCcchHHHHhhh-----CChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHh
Q psy13718 70 FRY-RQKQVYKPASLL-----FPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCE 128 (165)
Q Consensus 70 F~~-RRKtL~n~L~~~-----~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~ 128 (165)
+.. ++..|+..|..- .++. ...++|=.+||.|...+.+|+.+++.+|++.+.+.+.
T Consensus 169 L~~~~~~~IK~~LLDQ~viaGiGNI---Ya~EiLf~AgI~P~~~~~~Ls~~~~~~L~~ai~~Vl~ 230 (287)
T 3w0f_A 169 VKKQGDRMLCDVLLDQRVLPGVGNI---IKNEALFDSGLHPAVKVCQLSDKQACHLVKMTRDFSI 230 (287)
T ss_dssp HHTTCSSBHHHHHHCTTTSTTCCHH---HHHHHHHHHTCCTTCBGGGSCHHHHHHHHHHHHHHHH
T ss_pred HhcCCcccHHHHHhcCCccccccHH---HHHHHHHHccCCccCccccCCHHHHHHHHHHHHHHHH
Confidence 344 577899988752 2322 4668888999999999999999999999999987643
No 26
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=80.05 E-value=3.9 Score=34.32 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=44.5
Q ss_pred HHHHh-hCcCcchHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHH
Q psy13718 66 VSCIF-RYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDM 126 (165)
Q Consensus 66 vr~~F-~~RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~ 126 (165)
++.+- .+.+|++.+.|...+++ ..+..+++.+|++ +++..+++.++...|++.+..+
T Consensus 271 ~~~~~~~~~~~~~~~~l~~~lp~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~ 328 (401)
T 2gqf_A 271 INQAKQSSPKQMLKTILVRLLPK---KLVELWIEQGIVQ-DEVIANISKVRVKNLVDFIHHW 328 (401)
T ss_dssp HHHHHHHCTTSBHHHHHTTTSCH---HHHHHHHHTTSSC-CCBGGGCCHHHHHHHHHHHHCE
T ss_pred HHHHhhhcccccHHHHhhhhcCH---HHHHHHHHHcCCC-CCchhhCCHHHHHHHHHHHhcC
Confidence 34444 56789999999998874 2566678888998 6788999999999998777654
No 27
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=75.59 E-value=10 Score=31.82 Aligned_cols=66 Identities=11% Similarity=0.121 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHhhC-cCcchHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHH
Q psy13718 58 PFKLIERVVSCIFRY-RQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDM 126 (165)
Q Consensus 58 ~~~~f~~~vr~~F~~-RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~ 126 (165)
+.+.+...+...|.. ++++|.+.|...++. ..+..+++.+||+++++..+++.++...|.+.+..+
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~l~~~l~~~~~~---~~~~~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~ 369 (447)
T 2i0z_A 303 NSEQLFQRMLKQMKEDPKKGIKNVLKGYVPE---RYFLFLLEKNEIDGSEQAGQVSHEKIRALVKDFKEF 369 (447)
T ss_dssp CHHHHHHHHHHHHTTSTTSBHHHHTTTSSCH---HHHHHHHHHTTCCTTSBGGGSCHHHHHHHHHHHHHE
T ss_pred CHHHHHHHHHHHHHhChhhhHHHhccccChH---HHHHHHHHHcCCCcCCchhhCCHHHHHHHHHHhhCC
Confidence 345565555555544 678899998877764 356677888899988999999999998887776654
No 28
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=73.33 E-value=8.9 Score=32.38 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=45.7
Q ss_pred HHHHh-hCcCcchHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHH
Q psy13718 66 VSCIF-RYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDM 126 (165)
Q Consensus 66 vr~~F-~~RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~ 126 (165)
+...+ .+.+|++.|.|...++.. .+..+++.+++ ++++..+++.++...|++.+.++
T Consensus 290 ~~~~~~~~~~~~~~~~l~~~lp~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~ 347 (417)
T 3v76_A 290 LKGMRRANGRQAVQTALADILPRR---LAQFFADEAKL-TGRMLADLSDKTIDALASSIQVW 347 (417)
T ss_dssp HHHHHHHTCSSBHHHHHTTTSCHH---HHHHHHHHTTC-TTCBGGGCCHHHHHHHHHHHHSE
T ss_pred HHHHHHhchhhhHHHHHHHHhhHH---HHHHHHHhcCC-CCCchhhCCHHHHHHHHHHhcCC
Confidence 43344 467899999999988852 56677888899 89999999999999999888664
No 29
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=65.52 E-value=11 Score=32.88 Aligned_cols=65 Identities=15% Similarity=0.155 Sum_probs=48.0
Q ss_pred HHHHHHHHhhCcCc-chHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHH
Q psy13718 62 IERVVSCIFRYRQK-QVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDM 126 (165)
Q Consensus 62 f~~~vr~~F~~RRK-tL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~ 126 (165)
+..+++.+=..+.. ++..-|..-|..-....+.+++..+|++++.+|.+|+.++..+|.+++.+.
T Consensus 239 l~~~~~~~~~~~~~~~~~~fl~~~f~~v~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 304 (471)
T 1mu5_A 239 REEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKY 304 (471)
T ss_dssp HHHHHHHSTTCSSCCBHHHHHTTSSSSCCHHHHHHHHHHTTCCTTSBGGGCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCCcchHHhhhccccccCHHHHHHHHHhcCCCCCCChhhcCHHHHHHHHHHHHhc
Confidence 44555544445555 677777665543223467888889999999999999999999999988765
No 30
>3p9a_A DNA-packaging protein GP3; terminase small subunit, bacteriophage P22, D binding protein; 1.75A {Enterobacteria phage P22}
Probab=46.12 E-value=15 Score=27.83 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=28.7
Q ss_pred CCCccccCHHHHHHHHHHHHHHHhhCCCccceec
Q psy13718 105 ILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTL 138 (165)
Q Consensus 105 ~~R~e~Ls~eqf~~L~~~l~~~~~~~p~~~~~~~ 138 (165)
.+-+--.|||++..++..+.+||+++|...+++-
T Consensus 17 GR~p~f~tPEeL~~aa~eYFeWcE~Npl~e~k~~ 50 (162)
T 3p9a_A 17 GRNPKFESPEALWAACCEYFEWVEANPLWEMKAF 50 (162)
T ss_dssp CSSCCCCSHHHHHHHHHHHHHHHHHSCEEEEEEE
T ss_pred CCCCCcCCHHHHHHHHHHHHHHHHhchHhhhhhh
Confidence 3446778999999999999999999998766665
No 31
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=45.02 E-value=61 Score=28.60 Aligned_cols=65 Identities=15% Similarity=0.141 Sum_probs=47.0
Q ss_pred HHHHHHHHhhCcCc-chHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHH
Q psy13718 62 IERVVSCIFRYRQK-QVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDM 126 (165)
Q Consensus 62 f~~~vr~~F~~RRK-tL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~ 126 (165)
+..+++.+=..... +|..=|...+.......+..++..+|++++.++.+|+.+|..+|..++.+.
T Consensus 238 ~~~~l~~~~~~~~~~~l~~fl~~~ft~~g~~~a~~~~~~~gl~~~~~~~~l~~~~~~~ll~a~~~~ 303 (530)
T 2zbk_B 238 REEIKILINNLKRDYTIKEFLVNEFQSIGDTTADKILELAGLKPNKKVKNLTEEEITRLVETFKKD 303 (530)
T ss_dssp HHHHHHHHTTCSSCCBHHHHHHTTSTTCCHHHHHHHHHHTTCCSSCBSSCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCCceeHhhhcCccccccHHHHHHHHHhhCCCCCCCcccCCHHHHHHHHHHHHhc
Confidence 34444444344455 677777666654323356778888999999999999999999999998876
No 32
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=42.31 E-value=13 Score=24.00 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=26.6
Q ss_pred cCCCCCCCccccCHHHHHHHHHHHHHHHhhCCC
Q psy13718 100 ACVKPILRPYQLSVQEFGQICLAYRDMCEEMPG 132 (165)
Q Consensus 100 ~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~p~ 132 (165)
.|||++.+-.-||.++|..++..-..-....|.
T Consensus 22 ~gVD~~~lE~yLsdedF~~vFgms~~eF~~LP~ 54 (67)
T 1yu8_X 22 RGVDPSAKENHLSDEDFKAVFGMTRSAFANLPL 54 (67)
T ss_dssp TTCCTTCGGGGSCHHHHHHHHSSCHHHHHTSCH
T ss_pred cccChHHHHhcCCHHHHHHHHCcCHHHHHHChH
Confidence 489999999999999999999765555555554
No 33
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=39.02 E-value=13 Score=31.56 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=42.9
Q ss_pred cCcchHHHHhhh-----CChhHHHHHHHHHHHcCCCCCCCccccCHH--------------------HHHHHHHHHHHHH
Q psy13718 73 RQKQVYKPASLL-----FPKRKRQLVVSLLERACVKPILRPYQLSVQ--------------------EFGQICLAYRDMC 127 (165)
Q Consensus 73 RRKtL~n~L~~~-----~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~e--------------------qf~~L~~~l~~~~ 127 (165)
+++.|+..|..- .++. ...++|=.+||.|...+.+|+.+ ++..|++.+...+
T Consensus 157 ~~~~IK~~LLDQ~vVAGIGNI---YadEiLF~AgIhP~r~a~~Ls~~~~~~~~~~~~~~~~k~~~~~e~~~L~~ai~~VL 233 (364)
T 1tdh_A 157 FDRPICEALLDQRFFNGIGNY---LRAEILYRLKIPPFEKARSVLEALQQHRPSPELTLSQKIRTKLQNPDLLELCHSVP 233 (364)
T ss_dssp GGSBHHHHTTCTTTSTTCCHH---HHHHHHHHHTCCTTSBHHHHHGGGC-----CCSCHHHHHHHTTTSCCHHHHHHHHH
T ss_pred ccccHHHHHhcCCeeeccchH---HHHHHHHHCcCCCCCChhhcCHHHhccccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 477888887642 2322 56788999999999999999998 8888999888777
Q ss_pred hhC
Q psy13718 128 EEM 130 (165)
Q Consensus 128 ~~~ 130 (165)
.++
T Consensus 234 ~~A 236 (364)
T 1tdh_A 234 KEV 236 (364)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 34
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=37.56 E-value=10 Score=24.50 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=26.0
Q ss_pred cCCCCCCCccccCHHHHHHHHHHHHHHHhhCCC
Q psy13718 100 ACVKPILRPYQLSVQEFGQICLAYRDMCEEMPG 132 (165)
Q Consensus 100 ~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~p~ 132 (165)
.|||++.+-.-||.++|..++..-..-...-|.
T Consensus 22 ~gVD~~~lE~yLsdedF~~vFgmsr~eF~~LP~ 54 (67)
T 2k6m_S 22 EGVDPLKLEIYLTDEDFEFALDMTRDEYNALPA 54 (67)
T ss_dssp SSSBTTBCGGGSCHHHHHHHTSSCHHHHTTSCH
T ss_pred CCCCchHHHhhCCHHHHHHHHCcCHHHHHHCcH
Confidence 489999999999999999998755554544443
No 35
>2cmx_A ORF F-112, F112, hypothetical 13.2 kDa protein; sulfolobus spindle virus, thermophilic protein, hypothetical protein; 2.30A {Sulfolobus virus-like particle SSV1} PDB: 2vqc_A
Probab=35.36 E-value=30 Score=24.31 Aligned_cols=51 Identities=29% Similarity=0.354 Sum_probs=28.9
Q ss_pred ccCHHHHHHHHHHHHHHHhhCCCccceeccCCC---CCCCccccccccCC--Cccc
Q psy13718 110 QLSVQEFGQICLAYRDMCEEMPGLYEYTLEDTP---GDIEPEAVAEQEGE--GDEI 160 (165)
Q Consensus 110 ~Ls~eqf~~L~~~l~~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~ 160 (165)
++|+.--..+++.+..+|+..|..-++-.+.+| .-|.-|.+.+++.| .++|
T Consensus 40 eIS~s~Ay~I~~~lk~iCE~h~~eC~~~~K~rKtv~~~~K~E~~ee~~qE~~~~eI 95 (118)
T 2cmx_A 40 EISVPSAYNIQRALKAICERHPDECEVQYKNRKTTFKWIKQEQKEEQKQEQTQDNI 95 (118)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTTEEEEECSSCEEEEECC----------------
T ss_pred ccchhhhhHHHHHHHHHHHhCcchhhhhhccchHHHHHHHHHHHHHHHhHhHHHHH
Confidence 556666677888899999999999888777664 45666666665544 5555
No 36
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=33.85 E-value=11 Score=24.43 Aligned_cols=33 Identities=12% Similarity=0.149 Sum_probs=25.7
Q ss_pred cCCCCCCCccccCHHHHHHHHHHHHHHHhhCCC
Q psy13718 100 ACVKPILRPYQLSVQEFGQICLAYRDMCEEMPG 132 (165)
Q Consensus 100 ~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~p~ 132 (165)
.|||++.+-.-||.++|..++..-..-...-|.
T Consensus 23 ~gVD~~~lE~yLsdedF~~vFgmsr~eF~~LP~ 55 (68)
T 1qzp_A 23 PGVDRMRLERHLSAEDFSRVFAMSPEEFGKLAL 55 (68)
T ss_dssp SSCCGGGCGGGBCHHHHHHHSSSCHHHHHHSCH
T ss_pred CCCCchHHHhhCCHHHHHHHHCcCHHHHHHChH
Confidence 489999999999999999998755555554443
No 37
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=33.12 E-value=94 Score=19.71 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHhh
Q psy13718 91 QLVVSLLERACVKPILRPYQLSVQEFGQICLAYRDMCEE 129 (165)
Q Consensus 91 ~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~ 129 (165)
+.+.+++..+..+. -..|+.++|+.+...+...|+.
T Consensus 52 ~~v~~~~~~~D~d~---dG~I~f~EF~~~~~~l~~~~~~ 87 (92)
T 3rm1_A 52 EVVDKVMETLDSNG---DGECDFQEFMAFVAMITTACHE 87 (92)
T ss_dssp HHHHHHHHHHCTTS---SSSBCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHcCCC---CCCCcHHHHHHHHHHHHHHHHH
Confidence 47788888887654 4689999999998888776654
No 38
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=32.83 E-value=2.9 Score=31.22 Aligned_cols=48 Identities=15% Similarity=-0.025 Sum_probs=35.1
Q ss_pred cCcchHHHHhhhCChhHHHHHHHHHHHcCCCCCCCccccCHHHHHHHHHH
Q psy13718 73 RQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLA 122 (165)
Q Consensus 73 RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~~~~R~e~Ls~eqf~~L~~~ 122 (165)
..|.+.-+|..+++-. ...+..+++.+|| +++|+.+|+.+|+..|-+.
T Consensus 56 ~~K~v~~aLt~IyGIG-~~~A~~I~~~~gI-~~~rv~~Lte~ei~~l~~~ 103 (145)
T 3bbn_M 56 NHKRVEYSLQYIHGIG-RSRSRQILLDLNF-DNKVTKDLSEEEVIILRKE 103 (145)
T ss_dssp CSSBTTTGGGGSTTCC-SSTTTGGGTTTTC-CSCBTTSCCSSTTHHHHSS
T ss_pred CCCEEEEeeeeecCcc-HHHHHHHHHHcCC-CceEcCCCCHHHHHHHHHH
Confidence 4666777887775421 1134577889999 6999999999999887543
No 39
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=28.31 E-value=17 Score=24.80 Aligned_cols=34 Identities=18% Similarity=0.009 Sum_probs=27.1
Q ss_pred cCCCCCCCccccCHHHHHHHHHHHHHHHhhCCCc
Q psy13718 100 ACVKPILRPYQLSVQEFGQICLAYRDMCEEMPGL 133 (165)
Q Consensus 100 ~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~p~~ 133 (165)
.|||++++-.-||.++|.++|..-..-...-|.-
T Consensus 37 ~gVD~tklE~YLSdedF~~vFgMsr~eF~~LP~W 70 (88)
T 1ujs_A 37 KDVDRTRLERHLSQEEFYQVFGMTISEFDRLALW 70 (88)
T ss_dssp SSCCTTTGGGGSCTTHHHHHHSSCHHHHTTSCHH
T ss_pred cccCHHHHHhcCCHHHHHHHHCcCHHHHHHChHH
Confidence 4899999999999999999997665555555543
No 40
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=27.41 E-value=1.5e+02 Score=20.40 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhCcCcchHHHHhhhCChhHHHHHHHHHHHcCCC
Q psy13718 59 FKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVK 103 (165)
Q Consensus 59 ~~~f~~~vr~~F~~RRKtL~n~L~~~~~~~~~~~~~~~L~~~gi~ 103 (165)
...|-.=+..++...||.|...++...++.+....+..++..||.
T Consensus 50 I~~Fc~kLl~LyG~~Rk~LL~gmRpFIp~~Di~~FesFle~igir 94 (98)
T 4fqn_A 50 IHEFCINLRQLYGDSRKFLLLGLRPFIPEKDSQHFENFLETIGVK 94 (98)
T ss_dssp HHHHHHHHHHHHCGGGGGGGGGGGGGSCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCCCChhhHHHHHHHHHHcCcc
Confidence 333433444567778999999998888865555777888888885
No 41
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=24.87 E-value=72 Score=20.76 Aligned_cols=32 Identities=19% Similarity=0.220 Sum_probs=24.1
Q ss_pred HHHHHcCCCCCCCccccCHHHHHHHHHHHHHHHhhCCC
Q psy13718 95 SLLERACVKPILRPYQLSVQEFGQICLAYRDMCEEMPG 132 (165)
Q Consensus 95 ~~L~~~gi~~~~R~e~Ls~eqf~~L~~~l~~~~~~~p~ 132 (165)
.-|+.+||+ ..=|.+|++|+..+.++ ++-||.
T Consensus 35 ~RL~kLGI~-ktdP~~LT~eEi~~FaR-----LdIDP~ 66 (71)
T 2eo2_A 35 SRLKKLGIH-KTDPSTLTEEEVRKFAR-----LNIDPA 66 (71)
T ss_dssp HHHHHHTCC-CCSTTTCCHHHHHHHHH-----TCCCST
T ss_pred HHHHHcCCC-CCCcccCCHHHHhhcee-----cccCcc
Confidence 447788998 46699999999888754 566664
No 42
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} SCOP: d.58.4.19 PDB: 3hds_A* 3hfk_A* 2ifx_A*
Probab=22.57 E-value=74 Score=22.15 Aligned_cols=36 Identities=28% Similarity=0.588 Sum_probs=28.9
Q ss_pred CCCccccCHHHHHHHHHHHHHHHhhCCCccceeccC
Q psy13718 105 ILRPYQLSVQEFGQICLAYRDMCEEMPGLYEYTLED 140 (165)
Q Consensus 105 ~~R~e~Ls~eqf~~L~~~l~~~~~~~p~~~~~~~~~ 140 (165)
-.|...||.++|..=+..-..+....|++..|+-..
T Consensus 17 l~Rk~gmS~EeF~~~w~~Hapla~~lpGl~~Y~q~~ 52 (116)
T 3hf5_A 17 LVKPESMSHEQFRKECVVHFQMSAGMPGLHKYEVRL 52 (116)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHTTTCTTCSEEEEEE
T ss_pred EecCCCcCHHHHHHHHHHHHHHHHhCcCCccEEEEE
Confidence 478999999999998884445777889998887554
Done!