RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13718
(165 letters)
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 74.7 bits (183), Expect = 3e-17
Identities = 15/144 (10%), Positives = 39/144 (27%), Gaps = 26/144 (18%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNV---------------------DHRFTIPGKAFIPKPQ 39
++A GM R + S++ + + + P
Sbjct: 177 LLARPGMHSRSKCSVVREAFTDTKLIAISDANELKGFDSQCIEEWDPILFSAAEIWPTKG 236
Query: 40 VDVGVVHFTPRVHPIIDLPFKLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLER 99
+ +V P + V + ++ + L ++ + ++
Sbjct: 237 KPIALVEMDPIDFDF---DVDNWDYVTRHLMILKRTPLNTVMDSLGHGGQQYFNSRITDK 293
Query: 100 ACVKPILRPYQLSVQEFGQICLAY 123
+K P L+ EF + +
Sbjct: 294 DLLK--KCPIDLTNDEFIYLTKLF 315
>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus
pneumoniae, Ermam [TaxId: 1313]}
Length = 245
Score = 58.0 bits (139), Expect = 2e-11
Identities = 20/117 (17%), Positives = 44/117 (37%), Gaps = 13/117 (11%)
Query: 7 MEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVV 66
++ L ++ ++ +P + F PKP+V+ ++ T + D +KL V
Sbjct: 135 LDIHRTLGLLLHTQVSIQQLLKLPAECFHPKPKVNSVLIKLTRHTTDVPDKYWKLYTYFV 194
Query: 67 SCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAY 123
S +Q LF K + ++ A + ++ ++ I +Y
Sbjct: 195 SKWVNREYRQ-------LFTKNQ---FHQAMKHA---KVNNLSTITYEQVLSIFNSY 238
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein
KsgA {Escherichia coli [TaxId: 562]}
Length = 252
Score = 55.7 bits (133), Expect = 1e-10
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 8/126 (6%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVH-PIIDLPF 59
++A + RLS+M Q +CNV +P AF P P+VD VV P P
Sbjct: 132 LVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDV 191
Query: 60 KLIERVVSCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQI 119
+++ R+ + F R+K + LF +L + P +R +SV ++ Q+
Sbjct: 192 RVLSRITTEAFNQRRKTIRNSLGNLFSVE-------VLTGMGIDPAMRAENISVAQYCQM 244
Query: 120 CLAYRD 125
+
Sbjct: 245 ANYLAE 250
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis,
Ermc' [TaxId: 1423]}
Length = 235
Score = 53.3 bits (127), Expect = 9e-10
Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 13/117 (11%)
Query: 7 MEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFKLIERVV 66
+ + L++ ++ +P + F PKP+V+ ++ + I + V
Sbjct: 127 LNTKRSLALFLMAEVDISILSMVPREYFHPKPKVNSSLIRLNRKKSRISHKDKQKYNYFV 186
Query: 67 SCIFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRPYQLSVQEFGQICLAY 123
K+++ + L+ A I +S ++F + +Y
Sbjct: 187 MKWVNKEYKKIFTKNQFN----------NSLKHA---GIDDLNNISFEQFLSLFNSY 230
>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 278
Score = 36.8 bits (84), Expect = 5e-04
Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 24/146 (16%)
Query: 1 MIATEGMEQRCRLSIMCQNWCNVDHRFTIPGKAFIPKPQVDVGVVHFTPRVHPIIDLPFK 60
++A G + CRLSI Q VDH + F P P+V+ VV P+ +P + F+
Sbjct: 128 LVAKPGDKLYCRLSINTQLLARVDHLMKVGKNNFRPPPKVESSVVRIEPK-NPPPPINFQ 186
Query: 61 LIERVVSCIFRYRQKQVYKPASLLFPKRK----------------------RQLVVSLLE 98
+ +V F + K + ++ + +L
Sbjct: 187 EWDGLVRITFVRKNKTLSAAFKSSAVQQLLEKNYRIHCSVHNIIIPEDFSIADKIQQILT 246
Query: 99 RACVKPILRPYQLSVQEFGQICLAYR 124
R + + +F ++ +
Sbjct: 247 STGFSD-KRARSMDIDDFIRLLHGFN 271
>d2ifxa1 d.58.4.19 (A:1-108) Hypothetical protein Reut_A1503
{Ralstonia eutropha [TaxId: 106590]}
Length = 108
Score = 28.1 bits (62), Expect = 0.23
Identities = 10/32 (31%), Positives = 21/32 (65%)
Query: 105 ILRPYQLSVQEFGQICLAYRDMCEEMPGLYEY 136
+++P +S + F CL + +M ++PGL++Y
Sbjct: 8 LVKPAGMSDETFRAECLRHYEMSHDVPGLHKY 39
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 124
Score = 26.5 bits (58), Expect = 0.88
Identities = 7/29 (24%), Positives = 17/29 (58%)
Query: 54 IIDLPFKLIERVVSCIFRYRQKQVYKPAS 82
++++ K++ V +C+ K+V P+S
Sbjct: 95 LVEVKPKMVMTVFACLMGRGMKRVSGPSS 123
>d2bodx1 c.6.1.1 (X:2-286) Cellulase E2 {Thermomonospora fusca,
strain yx [TaxId: 2021]}
Length = 285
Score = 25.6 bits (56), Expect = 3.0
Identities = 5/26 (19%), Positives = 8/26 (30%), Gaps = 6/26 (23%)
Query: 18 QNWCNVDHRFTIPGKAFIPKPQVDVG 43
WC+ G+A + G
Sbjct: 228 NEWCDP------SGRAIGTPSTTNTG 247
>d1uapa_ b.40.3.3 (A:) Procollagen c-proteinase enhancer protein
PCOLCE {Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 24.5 bits (53), Expect = 4.7
Identities = 5/40 (12%), Positives = 8/40 (20%)
Query: 69 IFRYRQKQVYKPASLLFPKRKRQLVVSLLERACVKPILRP 108
YK L P + P ++
Sbjct: 44 AVTVSLIGAYKTGGLDLPSPPTGASLKFYVPCKQCPPMKK 83
>d2qrdb1 d.353.1.1 (B:205-297) AMP-activated protein kinase beta
subunit {Schizosaccharomyces pombe [TaxId: 4896]}
Length = 93
Score = 24.0 bits (52), Expect = 5.1
Identities = 6/20 (30%), Positives = 9/20 (45%), Gaps = 4/20 (20%)
Query: 65 VVSCIFRYRQKQV----YKP 80
+S RY +K V +K
Sbjct: 72 ALSATTRYHRKYVTTAMFKN 91
>d2v8qb1 d.353.1.1 (B:190-272) 5'-AMP-activated protein kinase
subunit beta-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 23.9 bits (52), Expect = 5.5
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 4/20 (20%)
Query: 65 VVSCIFRYRQKQV----YKP 80
V+S RY++K V YKP
Sbjct: 63 VLSATHRYKKKYVTTLLYKP 82
>d2qlvb2 d.353.1.1 (B:306-412) SIP2 {Saccharomyces cerevisiae
[TaxId: 4932]}
Length = 107
Score = 24.1 bits (52), Expect = 6.4
Identities = 9/20 (45%), Positives = 11/20 (55%), Gaps = 4/20 (20%)
Query: 65 VVSCIFRYRQKQV----YKP 80
V+ I RY+QK V Y P
Sbjct: 87 CVASIVRYKQKYVTQILYTP 106
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.142 0.443
Gapped
Lambda K H
0.267 0.0663 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 655,684
Number of extensions: 30506
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 14
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (22.8 bits)