BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13719
         (139 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LMI|A Chain A, Nmr Structure Of The Protein Bc040485 From Homo Sapiens
          Length = 107

 Score = 28.5 bits (62), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 93  KRGTAILLTLSSDTCQGLFERHKLLFGVRIIEIF 126
           +RG A++   S    Q   E+H++  G R +E++
Sbjct: 54  RRGDALIEMESEQDVQKALEKHRMYMGQRYVEVY 87


>pdb|6AME|A Chain A, Type Iii Antifreeze Protein Isoform Hplc 12 M21a
          Length = 66

 Score = 28.5 bits (62), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 6/61 (9%)

Query: 51  VVNQHKPLDTLYECPVYYTAKRGEYIVPVGLDSGEIPP--DHWVKRGTAILLTLSSDTCQ 108
           V NQ  P++T     +   A R E + PVG+ + +IP      V R   +  TL  D  +
Sbjct: 7   VANQLIPINTA----LTLVAMRSEVVTPVGIPAEDIPRLVSMQVNRAVPLGTTLMPDMVK 62

Query: 109 G 109
           G
Sbjct: 63  G 63


>pdb|2DHA|A Chain A, Solution Structure Of The Second Rna Recognition Motif In
           Hypothetical Protein Flj201171
          Length = 123

 Score = 27.3 bits (59), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)

Query: 95  GTAILLTLSSDTCQGLFERHKLLFGVRIIEIFGKSYNAAVMRVVT 139
           G A +L    +  Q    +HK L G R IE+F +S  A V +V+ 
Sbjct: 69  GDAFVLFACEEYAQNALRKHKDLLGKRYIELF-RSTAAEVQQVLN 112


>pdb|1JYH|A Chain A, Crystal Structure Of The Escherichia Coli Sbmc Protein
           (Aka Gyrase Inhibitory Protein Gyri, Aka Yeeb)
          Length = 157

 Score = 26.2 bits (56), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 65  PVYYTAKRGEYIVPVGLDSGEIPPDHWV--------KRGTAILLTLSSDTCQGLFERHKL 116
           P   T K+G   + + +DS  I P  WV        +     L   +  T  G F   + 
Sbjct: 21  PWEQTVKKGFEQLMMWVDSKNIVPKEWVAVYYDNPDETPAEKLRCDTVVTVPGYFTLPEN 80

Query: 117 LFGVRIIEIFGKSYNAAVMRVV 138
             GV + EI G  Y  AV RVV
Sbjct: 81  SEGVILTEITGGQYAVAVARVV 102


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.142    0.450 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,292,713
Number of Sequences: 62578
Number of extensions: 172200
Number of successful extensions: 347
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 344
Number of HSP's gapped (non-prelim): 5
length of query: 139
length of database: 14,973,337
effective HSP length: 89
effective length of query: 50
effective length of database: 9,403,895
effective search space: 470194750
effective search space used: 470194750
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 46 (22.3 bits)