Query psy13719
Match_columns 139
No_of_seqs 114 out of 852
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 18:43:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13719.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13719hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03028 Dynein_heavy: Dynein 99.9 4.3E-23 9.4E-28 184.9 3.8 95 6-101 611-707 (707)
2 PF08407 Chitin_synth_1N: Chit 35.8 15 0.00033 24.8 0.5 55 72-126 13-75 (79)
3 PRK02615 thiamine-phosphate py 25.1 20 0.00044 30.4 -0.4 18 116-133 95-112 (347)
4 PRK13680 hypothetical protein; 20.4 2.4E+02 0.0052 20.5 4.4 40 43-84 69-108 (117)
5 PRK10113 cell division modulat 15.9 74 0.0016 21.2 0.8 18 86-103 32-51 (80)
6 PF11623 DUF3252: Protein of u 14.1 96 0.0021 19.5 0.9 11 16-26 33-43 (53)
7 KOG4077|consensus 13.9 55 0.0012 24.6 -0.2 23 111-133 35-57 (149)
8 cd05792 S1_eIF1AD_like S1_eIF1 11.5 2.3E+02 0.005 18.9 2.3 27 77-104 25-51 (78)
9 PF07962 Swi3: Replication For 11.1 60 0.0013 21.8 -0.7 23 107-129 46-68 (83)
10 PF10729 CedA: Cell division a 10.8 96 0.0021 20.7 0.2 16 86-101 32-49 (80)
No 1
>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=99.87 E-value=4.3e-23 Score=184.86 Aligned_cols=95 Identities=41% Similarity=0.768 Sum_probs=68.8
Q ss_pred CCCCCeEEEeceeEecceeeCCCCcccCCCCccceecCCeEEEEeeecCCCCCCCeEeeeeeeeccccc--eEEEEEecC
Q psy13719 6 FYSQEGVYVCGLFLEGAGWNKSNRSLCEPLPLQLIYKLPVLHCKPVVNQHKPLDTLYECPVYYTAKRGE--YIVPVGLDS 83 (139)
Q Consensus 6 ~~p~~Gv~V~GL~LEGA~WD~~~~~L~e~~~~~l~~~lPvi~l~p~~~~~~~~~~~y~cPVY~t~~R~n--~V~~v~Lpt 83 (139)
.++++|+||+||+||||+||.+.+++.++.++.++++||++|+.|+........+.|.||||+++.|++ +|++++||+
T Consensus 611 ~~~~~g~~I~GL~leGA~wd~~~~~l~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~y~~PvY~~~~R~~~~~v~~l~l~~ 690 (707)
T PF03028_consen 611 SPPEDGVYIHGLFLEGARWDGQKGCLEESSPKSLYPPMPVIWLKPVQASPQSSDNSYECPVYKTSSREGLNFVFSLPLPT 690 (707)
T ss_dssp ----EEEEE-SEEEESSEEET-TCEE--SSSEEEES-EEEE-EE-----TTCGGCSEEEEEESSTT--S--EEEEEEE-B
T ss_pred cccccceEEEeEEecccEeccccCcccCCCcccccccCceeEeccccccccCCCCEEECCceecCcCCCCeEEEEEEcCC
Confidence 357899999999999999999999999999999999999999999876555566889999999999977 999999999
Q ss_pred CCCCCCceEEeeeeeccc
Q psy13719 84 GEIPPDHWVKRGTAILLT 101 (139)
Q Consensus 84 ~~~~~~~Wi~rGVALll~ 101 (139)
+ .++++|++|||||+|+
T Consensus 691 ~-~~~~~Wi~rGvAl~lq 707 (707)
T PF03028_consen 691 D-EDPDHWILRGVALLLQ 707 (707)
T ss_dssp --T-HHHHHTTT-EEES-
T ss_pred C-CCHHHHHHHhHHHhcC
Confidence 6 7999999999999986
No 2
>PF08407 Chitin_synth_1N: Chitin synthase N-terminal; InterPro: IPR013616 This is the N-terminal domain of Chitin synthase (IPR004834 from INTERPRO). ; GO: 0004100 chitin synthase activity
Probab=35.84 E-value=15 Score=24.80 Aligned_cols=55 Identities=22% Similarity=0.133 Sum_probs=39.9
Q ss_pred ccceEEEEEecCC--------CCCCCceEEeeeeeccccCcccccccchhcccccceehhhhh
Q psy13719 72 RGEYIVPVGLDSG--------EIPPDHWVKRGTAILLTLSSDTCQGLFERHKLLFGVRIIEIF 126 (139)
Q Consensus 72 R~n~V~~v~Lpt~--------~~~~~~Wi~rGVALll~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (139)
+.|+|+...+|.. ..+.+.=.+|=.|+.|+.+|=...|.-+|+.+...-|-+|+|
T Consensus 13 ~Gnlv~D~PVP~~ll~~~~~~~~~~Eft~mRYTAvTcdP~dF~~~gytLR~~~y~~pR~tEl~ 75 (79)
T PF08407_consen 13 NGNLVLDCPVPSALLNSLPRGRDEREFTHMRYTAVTCDPDDFTEDGYTLRQVLYGPPRETELF 75 (79)
T ss_pred cCcEEEECcCCHHHHhhCCCCCCCcchheEEeeeEEeCHHHHhHcCcEechhhcCCCCccEEE
Confidence 4678887776653 124455568888999999997788877888877667777765
No 3
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=25.09 E-value=20 Score=30.43 Aligned_cols=18 Identities=28% Similarity=0.615 Sum_probs=15.5
Q ss_pred cccceehhhhhcccccee
Q psy13719 116 LLFGVRIIEIFGKSYNAA 133 (139)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~ 133 (139)
.|.+.|.+|||||-|+..
T Consensus 95 ~qea~rvlee~~k~~~~~ 112 (347)
T PRK02615 95 VQEALRVLEEYGKLYDPE 112 (347)
T ss_pred HHHHHHHHHHHHccCCHH
Confidence 578899999999998754
No 4
>PRK13680 hypothetical protein; Provisional
Probab=20.37 E-value=2.4e+02 Score=20.53 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=26.2
Q ss_pred CCeEEEEeeecCCCCCCCeEeeeeeeeccccceEEEEEecCC
Q psy13719 43 LPVLHCKPVVNQHKPLDTLYECPVYYTAKRGEYIVPVGLDSG 84 (139)
Q Consensus 43 lPvi~l~p~~~~~~~~~~~y~cPVY~t~~R~n~V~~v~Lpt~ 84 (139)
-|++|+..... ...++.|..|+=....+...--.+.+-|.
T Consensus 69 ~PVaWin~~~i--tg~~~~~~VPltVRG~k~d~~Y~V~vdC~ 108 (117)
T PRK13680 69 DPVAWVNVQDI--TGKDDKWQVPLTVRGKSADIHYQVVVDCK 108 (117)
T ss_pred CCeEEEccccc--ccccceEEEEEEEecccCceEEEEEEEcc
Confidence 48888876443 23567899998877777555445555554
No 5
>PRK10113 cell division modulator; Provisional
Probab=15.85 E-value=74 Score=21.19 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=12.5
Q ss_pred CCCCceEEee--eeeccccC
Q psy13719 86 IPPDHWVKRG--TAILLTLS 103 (139)
Q Consensus 86 ~~~~~Wi~rG--VALll~~~ 103 (139)
.-.+.|++|| ||+++.-+
T Consensus 32 ~frDVW~LrGKYVAFvl~ge 51 (80)
T PRK10113 32 SFRDVWMLRGKYVAFVLMGE 51 (80)
T ss_pred chhhhheeccceEEEEEech
Confidence 3457799998 67776443
No 6
>PF11623 DUF3252: Protein of unknown function (DUF3252); InterPro: IPR021659 This family of proteins has no known function. Some members are annotated as Ssl0352 however this cannot be confirmed. Currently there is no known function. ; PDB: 3C4S_B 2JZ2_A.
Probab=14.12 E-value=96 Score=19.47 Aligned_cols=11 Identities=36% Similarity=1.120 Sum_probs=8.9
Q ss_pred ceeEecceeeC
Q psy13719 16 GLFLEGAGWNK 26 (139)
Q Consensus 16 GL~LEGA~WD~ 26 (139)
|..+||+.||.
T Consensus 33 aVLFEGGnWdK 43 (53)
T PF11623_consen 33 AVLFEGGNWDK 43 (53)
T ss_dssp EEEEEETTEEE
T ss_pred EEEecCCCceE
Confidence 45689999994
No 7
>KOG4077|consensus
Probab=13.86 E-value=55 Score=24.64 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=19.8
Q ss_pred chhcccccceehhhhhcccccee
Q psy13719 111 FERHKLLFGVRIIEIFGKSYNAA 133 (139)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~ 133 (139)
|-+.++.||..|-|+|.+.|+.-
T Consensus 35 ~~~~~~~hg~et~EEfd~ry~~y 57 (149)
T KOG4077|consen 35 FIKYSMEHGPETAEEFDARYEKY 57 (149)
T ss_pred hhhhHhhcCcccHHHHHHHHHHH
Confidence 55789999999999999988754
No 8
>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain. eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.
Probab=11.46 E-value=2.3e+02 Score=18.95 Aligned_cols=27 Identities=22% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEecCCCCCCCceEEeeeeeccccCc
Q psy13719 77 VPVGLDSGEIPPDHWVKRGTAILLTLSS 104 (139)
Q Consensus 77 ~~v~Lpt~~~~~~~Wi~rGVALll~~~~ 104 (139)
+.+.||.. -....||.||--++..+-+
T Consensus 25 ~l~~iP~K-fRk~iWIkrGd~VlV~p~~ 51 (78)
T cd05792 25 YLVSMPTK-FRKNIWIKRGDFVLVEPIE 51 (78)
T ss_pred EEEEechh-hcccEEEEeCCEEEEEecc
Confidence 33558874 7788999999988886654
No 9
>PF07962 Swi3: Replication Fork Protection Component Swi3; InterPro: IPR012923 Replication fork pausing is required to initiate recombination events. More specifically, Swi1 is required for recombination near the mat1 locus. Swi3 has been found to co-purify with Swi1. Together they define a fork protection complex that coordinates leading- and lagging-strand synthesis and stabilises stalled replication forks []. This complex is required for accurate replication, fork protection and replication checkpoint signalling [, ].; GO: 0006974 response to DNA damage stimulus, 0007049 cell cycle, 0048478 replication fork protection, 0005634 nucleus
Probab=11.09 E-value=60 Score=21.79 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=21.2
Q ss_pred ccccchhcccccceehhhhhccc
Q psy13719 107 CQGLFERHKLLFGVRIIEIFGKS 129 (139)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~ 129 (139)
|..+||+-+.-..+..||-+|++
T Consensus 46 ~h~LfPk~~F~d~i~~vE~LG~~ 68 (83)
T PF07962_consen 46 AHRLFPKASFEDFIERVEKLGKK 68 (83)
T ss_pred HHhcCCCCCHHHHHHHHHHHcCC
Confidence 77889999999999999999987
No 10
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=10.81 E-value=96 Score=20.72 Aligned_cols=16 Identities=38% Similarity=0.501 Sum_probs=11.8
Q ss_pred CCCCceEEee--eeeccc
Q psy13719 86 IPPDHWVKRG--TAILLT 101 (139)
Q Consensus 86 ~~~~~Wi~rG--VALll~ 101 (139)
.-.+.|++|| ||+++-
T Consensus 32 gfrdvw~lrgkyvafvl~ 49 (80)
T PF10729_consen 32 GFRDVWQLRGKYVAFVLM 49 (80)
T ss_dssp TECCECCCCCEEEEEEES
T ss_pred cccceeeeccceEEEEEe
Confidence 4567899998 677664
Done!