Query psy13719
Match_columns 139
No_of_seqs 114 out of 852
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 18:43:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13719.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13719hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 99.8 9.9E-22 3.4E-26 195.3 5.5 93 8-104 3148-3244(3245)
2 2opc_A AVRL567-A; cobalt, crys 31.6 68 0.0023 22.1 4.2 61 64-128 43-107 (127)
3 2l69_A Rossmann 2X3 fold prote 19.5 43 0.0015 22.9 1.4 17 122-138 41-57 (134)
4 3bej_E Nuclear receptor coacti 13.4 29 0.001 17.8 -0.5 12 108-119 6-17 (26)
5 2qvt_A AVRL567-D; AVRL567-A, c 12.4 3E+02 0.01 19.3 4.3 62 63-128 65-130 (150)
6 2bn8_A CEDA, cell division act 12.4 1.3E+02 0.0046 19.3 2.3 17 86-102 39-57 (87)
7 1yua_A Topoisomerase I; gene-r 11.8 2E+02 0.007 19.9 3.2 19 75-94 12-30 (122)
8 2jz2_A SSL0352 protein; SH3-li 11.5 79 0.0027 19.8 0.9 11 16-26 33-43 (66)
9 2p9w_A MAL S 1 allergenic prot 8.7 93 0.0032 25.1 0.6 16 14-29 10-25 (334)
10 1iqq_A S3-RNAse; japanese PEAR 7.8 1.8E+02 0.0062 21.0 1.8 16 7-22 25-40 (200)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.84 E-value=9.9e-22 Score=195.32 Aligned_cols=93 Identities=20% Similarity=0.295 Sum_probs=78.4
Q ss_pred CCCeEEEeceeEecceeeCCCCcccCCCCccceecCCeEEEEeeecCCCC---CCCeEeeeeeeeccccceEEEEEecCC
Q psy13719 8 SQEGVYVCGLFLEGAGWNKSNRSLCEPLPLQLIYKLPVLHCKPVVNQHKP---LDTLYECPVYYTAKRGEYIVPVGLDSG 84 (139)
Q Consensus 8 p~~Gv~V~GL~LEGA~WD~~~~~L~e~~~~~l~~~lPvi~l~p~~~~~~~---~~~~y~cPVY~t~~R~n~V~~v~Lpt~ 84 (139)
|++|+||+|||||||+||.+.+++.++. +++||++|++|+...... ..+.|.||||+|+.|+++|+++.||+.
T Consensus 3148 p~~G~yI~GL~LeGA~WD~~~~~l~e~~----~~~lPvi~l~~~~~~~~~~~~~~~~y~cPvYkt~~R~~~l~~~~l~~~ 3223 (3245)
T 3vkg_A 3148 GGASFNVKGMALEGAVWNNDQLTPTDIL----STPISIATLTWKDKDDPIFNNSSSKLSVPVYLNETRSELLFSIDLPYD 3223 (3245)
T ss_dssp --CCEEECSCEEESCEECSSSEECCSSS----EEECCCEEECCCC---CCTTSGGGEEEEEEESSTTCCCEEEEEEEEBC
T ss_pred CCceEEEeCEEEeccEecCCCceecCcc----cCCCCceeEEEeecccccccCCCCeEEcceEecCCCCCEEEEEEEECC
Confidence 7899999999999999999988888764 788999999998664332 346899999999999999999999874
Q ss_pred -CCCCCceEEeeeeeccccCc
Q psy13719 85 -EIPPDHWVKRGTAILLTLSS 104 (139)
Q Consensus 85 -~~~~~~Wi~rGVALll~~~~ 104 (139)
+.+++|||+|||||+|+++|
T Consensus 3224 t~~~~~~Wi~rGVALl~~~~d 3244 (3245)
T 3vkg_A 3224 QSTSKQNWYQRSVSISSWKSD 3244 (3245)
T ss_dssp TTSCHHHHHTTTCEEESCCCC
T ss_pred CCCCHhHHHHHHHHHHcCCcc
Confidence 37899999999999999876
No 2
>2opc_A AVRL567-A; cobalt, crystallization, single-wavelength anomalous dispersion (SAD), plant disease resistance, protein binding; 1.43A {Melampsora lini}
Probab=31.62 E-value=68 Score=22.08 Aligned_cols=61 Identities=15% Similarity=0.064 Sum_probs=32.2
Q ss_pred eeeeeec--cc-cceEEEEEecCCCCCCCceEEeeeeeccccCccc-ccccchhcccccceehhhhhcc
Q psy13719 64 CPVYYTA--KR-GEYIVPVGLDSGEIPPDHWVKRGTAILLTLSSDT-CQGLFERHKLLFGVRIIEIFGK 128 (139)
Q Consensus 64 cPVY~t~--~R-~n~V~~v~Lpt~~~~~~~Wi~rGVALll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 128 (139)
.|+|+.- +| +.+-|.|.+-... .++----|..-.+-+.-|++ + .++++.--.+||||+|--
T Consensus 43 MP~FK~i~~eq~eE~~FdV~I~HSs-Gp~~nrARsLG~VnSNmdq~W~---~~~R~~G~t~~tIe~~HL 107 (127)
T 2opc_A 43 MPLFKWIGGEQAEELHFCVHIAHSS-GPKLNRARSLGTVNSNMDQHWA---QAQRNSGATRRTIEGFHL 107 (127)
T ss_dssp SEEEEECSCCCSSCCEEEEEECCSS-SSCTTSCEEEEEEETTTTSSCB---CCBCCCSSCCCSCCGGGC
T ss_pred chhhhhhccchhhhheeEeEeeccc-CcccchhccccccccCccchhh---hhhhhcCceeeeeeeeee
Confidence 4566542 22 4556777776542 22221223333333332332 3 456777788999999854
No 3
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=19.46 E-value=43 Score=22.90 Aligned_cols=17 Identities=47% Similarity=0.573 Sum_probs=14.3
Q ss_pred hhhhhccccceeeeEec
Q psy13719 122 IIEIFGKSYNAAVMRVV 138 (139)
Q Consensus 122 ~~~~~~~~~~~~~~~~~ 138 (139)
.||++-|.|||.+.-||
T Consensus 41 sieelvkkynativvvv 57 (134)
T 2l69_A 41 SIEELVKKYNATIVVVV 57 (134)
T ss_dssp HHHHHTTCCCCEEEEEE
T ss_pred HHHHHHHHhCCeEEEEE
Confidence 48999999999877654
No 4
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=13.42 E-value=29 Score=17.76 Aligned_cols=12 Identities=50% Similarity=0.711 Sum_probs=8.9
Q ss_pred cccchhcccccc
Q psy13719 108 QGLFERHKLLFG 119 (139)
Q Consensus 108 ~~~~~~~~~~~~ 119 (139)
+-+-+||||||-
T Consensus 6 ~sL~EkHkILHr 17 (26)
T 3bej_E 6 SSLTERHKILHR 17 (26)
T ss_pred hhHHHHHHHHHH
Confidence 345789999884
No 5
>2qvt_A AVRL567-D; AVRL567-A, crystallization, molecular replacement, plant disease resistance, , unknown function; 2.26A {Melampsora lini}
Probab=12.45 E-value=3e+02 Score=19.32 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=32.2
Q ss_pred eeeeeeec--cc-cceEEEEEecCCCCCCCceEEeeeeeccccCccc-ccccchhcccccceehhhhhcc
Q psy13719 63 ECPVYYTA--KR-GEYIVPVGLDSGEIPPDHWVKRGTAILLTLSSDT-CQGLFERHKLLFGVRIIEIFGK 128 (139)
Q Consensus 63 ~cPVY~t~--~R-~n~V~~v~Lpt~~~~~~~Wi~rGVALll~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 128 (139)
-.|+|+.- +| +.+-|.|.+-.. ..|+--.-|..-.+-+.-|++ + .+-++.-..+||||+|--
T Consensus 65 tmp~fk~i~~eq~ee~~fdv~i~hs-~gp~~n~artlg~vnsnmdq~w~---~~~r~~g~t~~~iqd~hl 130 (150)
T 2qvt_A 65 TMPLFKWIGGEQAEELHFCVHIAHS-IGPKLNLARTLGTVNSNMDQHWA---QAHRHSGATRRTIQDFHL 130 (150)
T ss_dssp CSEEEEECSCCCSSCCEEEEEECCS-SSSCTTSCEEEEEEETTCCSSCB---CCBCCSTTSCCSCCGGGC
T ss_pred cchhhhhhccchhhhheeEeeeeec-cCcccchhhhhcccccCccchhh---hhhhhcCceeeeeeehhe
Confidence 34677653 33 556677777663 233222233332333322322 2 344556678899999854
No 6
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=12.39 E-value=1.3e+02 Score=19.31 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=12.2
Q ss_pred CCCCceEEee--eeecccc
Q psy13719 86 IPPDHWVKRG--TAILLTL 102 (139)
Q Consensus 86 ~~~~~Wi~rG--VALll~~ 102 (139)
.-.+.|++|| ||+++.-
T Consensus 39 ~frdvw~lrgkyvafvl~g 57 (87)
T 2bn8_A 39 SFRDVWMLRGKYVAFVLMG 57 (87)
T ss_dssp TCTTEEEETTEEEEBCCSS
T ss_pred cchhheeeccceEEEEEec
Confidence 4557899998 6777643
No 7
>1yua_A Topoisomerase I; gene-regulating protein, DNA binding protein; NMR {Escherichia coli} SCOP: g.41.3.3 g.41.3.3
Probab=11.80 E-value=2e+02 Score=19.91 Aligned_cols=19 Identities=16% Similarity=0.013 Sum_probs=13.6
Q ss_pred eEEEEEecCCCCCCCceEEe
Q psy13719 75 YIVPVGLDSGEIPPDHWVKR 94 (139)
Q Consensus 75 ~V~~v~Lpt~~~~~~~Wi~r 94 (139)
-|-.=.|+|. ...+++++|
T Consensus 12 Pv~~PeL~C~-k~d~~fVLR 30 (122)
T 1yua_A 12 PVPLPELPCE-KSDAYFVLR 30 (122)
T ss_dssp SEEEEEEECS-SSSCEEEEE
T ss_pred CCCCCccccc-ccCCEEEee
Confidence 3444568885 778888988
No 8
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=11.50 E-value=79 Score=19.77 Aligned_cols=11 Identities=27% Similarity=0.933 Sum_probs=8.9
Q ss_pred ceeEecceeeC
Q psy13719 16 GLFLEGAGWNK 26 (139)
Q Consensus 16 GL~LEGA~WD~ 26 (139)
+..+||+.||.
T Consensus 33 aVLFEGGnWDK 43 (66)
T 2jz2_A 33 AVLFENGNWDK 43 (66)
T ss_dssp EEEEESSSCEE
T ss_pred EEEecCCCcee
Confidence 45689999994
No 9
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=8.67 E-value=93 Score=25.13 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=12.7
Q ss_pred EeceeEecceeeCCCC
Q psy13719 14 VCGLFLEGAGWNKSNR 29 (139)
Q Consensus 14 V~GL~LEGA~WD~~~~ 29 (139)
..+||-||++||.+.+
T Consensus 10 ~~~~yPE~~~wd~~~g 25 (334)
T 2p9w_A 10 VKNLTPEDTIYDRTRQ 25 (334)
T ss_dssp CTTCCCSCEEEETTTT
T ss_pred CcccCCcCccCcCCCC
Confidence 4689999999997544
No 10
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1
Probab=7.78 E-value=1.8e+02 Score=20.98 Aligned_cols=16 Identities=19% Similarity=0.150 Sum_probs=12.5
Q ss_pred CCCCeEEEeceeEecc
Q psy13719 7 YSQEGVYVCGLFLEGA 22 (139)
Q Consensus 7 ~p~~Gv~V~GL~LEGA 22 (139)
+|..++.||||+=+..
T Consensus 25 ~~~~~ftIHGLWP~~~ 40 (200)
T 1iqq_A 25 PPDKLFTVHGLWPSNM 40 (200)
T ss_dssp CCCSSEEEEEEEEECS
T ss_pred CCCCCeEEeecccccC
Confidence 4567999999997654
Done!