Query psy13719
Match_columns 139
No_of_seqs 114 out of 852
Neff 6.2
Searched_HMMs 13730
Date Fri Aug 16 18:43:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13719.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13719hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bdsa_ g.9.1.1 (A:) BDs-I def 30.1 3.7 0.00027 21.9 -0.6 11 87-97 12-22 (43)
2 d1yuaa1 g.41.3.3 (A:1-65) Prok 28.3 16 0.0012 21.4 2.1 18 76-94 13-30 (65)
3 d1e0na_ b.72.1.1 (A:) Hypothet 14.7 33 0.0024 16.5 1.1 10 64-73 11-20 (27)
4 d1ig3a1 b.82.6.1 (A:179-263) T 10.8 53 0.0038 19.6 1.6 20 14-33 34-53 (85)
5 d1wv3a2 b.26.1.4 (A:79-186) Pr 8.2 81 0.0059 19.2 1.7 13 9-21 76-88 (108)
6 d2efva1 a.43.1.12 (A:6-87) Unc 8.0 39 0.0028 20.6 0.0 13 120-132 60-72 (82)
7 d3b5ha2 b.1.1.4 (A:23-102) Cer 8.0 1.7E+02 0.012 17.4 3.1 43 18-69 27-69 (80)
8 d1uf2c2 b.19.1.1 (C:148-300) R 7.8 43 0.0031 22.4 0.2 14 111-124 40-53 (153)
9 d1jy5a_ d.124.1.1 (A:) RNase-r 7.3 99 0.0072 20.7 2.0 14 7-20 34-47 (207)
10 d1iqqa_ d.124.1.1 (A:) S3-RNas 6.2 1.3E+02 0.0091 20.1 2.1 16 6-21 24-39 (200)
No 1
>d1bdsa_ g.9.1.1 (A:) BDs-I defensin {Sea anemone (Anemonia sulcata) [TaxId: 6108]}
Probab=30.06 E-value=3.7 Score=21.87 Aligned_cols=11 Identities=45% Similarity=0.903 Sum_probs=8.9
Q ss_pred CCCceEEeeee
Q psy13719 87 PPDHWVKRGTA 97 (139)
Q Consensus 87 ~~~~Wi~rGVA 97 (139)
..+.||+||+|
T Consensus 12 rgdlwilrgtc 22 (43)
T d1bdsa_ 12 RGDLWILRGTC 22 (43)
T ss_dssp CCEEECSCSSC
T ss_pred CCcEEEEeccc
Confidence 45789999986
No 2
>d1yuaa1 g.41.3.3 (A:1-65) Prokaryotic DNA topoisomerase I, a C-terminal fragment {Escherichia coli [TaxId: 562]}
Probab=28.27 E-value=16 Score=21.39 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=12.7
Q ss_pred EEEEEecCCCCCCCceEEe
Q psy13719 76 IVPVGLDSGEIPPDHWVKR 94 (139)
Q Consensus 76 V~~v~Lpt~~~~~~~Wi~r 94 (139)
|-.=+|+|. ...+++++|
T Consensus 13 i~mpeL~C~-K~dd~yvLR 30 (65)
T d1yuaa1 13 VPLPELPCE-KSDAYFVLR 30 (65)
T ss_dssp EEEEEEECS-SSSCEEEEE
T ss_pred ccCCCccee-eeccEEEee
Confidence 334568885 677888888
No 3
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=14.65 E-value=33 Score=16.47 Aligned_cols=10 Identities=40% Similarity=0.909 Sum_probs=8.0
Q ss_pred eeeeeecccc
Q psy13719 64 CPVYYTAKRG 73 (139)
Q Consensus 64 cPVY~t~~R~ 73 (139)
-|+|.+.+|.
T Consensus 11 rpmyynaq~q 20 (27)
T d1e0na_ 11 RPLYYNAEQK 20 (27)
T ss_dssp SEEEEETTTT
T ss_pred ceeeeehhhh
Confidence 3899998873
No 4
>d1ig3a1 b.82.6.1 (A:179-263) Thiamin pyrophosphokinase, substrate-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.80 E-value=53 Score=19.57 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=16.0
Q ss_pred EeceeEecceeeCCCCcccC
Q psy13719 14 VCGLFLEGAGWNKSNRSLCE 33 (139)
Q Consensus 14 V~GL~LEGA~WD~~~~~L~e 33 (139)
+.|+.++|.+|+-....|.-
T Consensus 34 ~~~vt~~Glky~L~~~~l~~ 53 (85)
T d1ig3a1 34 CNQVTTTGLKWNLTNDVLGF 53 (85)
T ss_dssp EEEEEEESBSSCCSSEEEBT
T ss_pred ceeEEEeCCEEeCCCCEEEC
Confidence 57899999999987766543
No 5
>d1wv3a2 b.26.1.4 (A:79-186) Protein EssC {Staphylococcus aureus [TaxId: 1280]}
Probab=8.20 E-value=81 Score=19.16 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=10.8
Q ss_pred CCeEEEeceeEec
Q psy13719 9 QEGVYVCGLFLEG 21 (139)
Q Consensus 9 ~~Gv~V~GL~LEG 21 (139)
.+-+||.|++||-
T Consensus 76 gdhiyvegiwlev 88 (108)
T d1wv3a2 76 GDHIYVEGIWLEV 88 (108)
T ss_dssp TCEEEETTEEEEE
T ss_pred cceEEEEEEEEEE
Confidence 5778999999983
No 6
>d2efva1 a.43.1.12 (A:6-87) Uncharacterized protein MJ0366 {Methanococcus jannaschii [TaxId: 2190]}
Probab=8.01 E-value=39 Score=20.55 Aligned_cols=13 Identities=46% Similarity=0.457 Sum_probs=9.9
Q ss_pred eehhhhhccccce
Q psy13719 120 VRIIEIFGKSYNA 132 (139)
Q Consensus 120 ~~~~~~~~~~~~~ 132 (139)
-++||.+||.-|-
T Consensus 60 e~IIeKyGKatN~ 72 (82)
T d2efva1 60 EVIIQRLGKSANL 72 (82)
T ss_dssp HHHHHHHGGGHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3689999987663
No 7
>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.97 E-value=1.7e+02 Score=17.38 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=23.4
Q ss_pred eEecceeeCCCCcccCCCCccceecCCeEEEEeeecCCCCCCCeEeeeeeee
Q psy13719 18 FLEGAGWNKSNRSLCEPLPLQLIYKLPVLHCKPVVNQHKPLDTLYECPVYYT 69 (139)
Q Consensus 18 ~LEGA~WD~~~~~L~e~~~~~l~~~lPvi~l~p~~~~~~~~~~~y~cPVY~t 69 (139)
-++|-+|-.....|.|......... .+ +.. .+....|.| ||++
T Consensus 27 ~i~ghrW~K~gkvl~ed~~~~~~te-----y~-V~~--~D~SGeY~C-VFl~ 69 (80)
T d3b5ha2 27 EVTGHRWLKGGVVLKEDALPGQKTE-----FK-VDS--DDQWGEYSC-VFLP 69 (80)
T ss_dssp CCCEEEEESSSEEEECTTCCCSEEE-----EE-ECG--GGCCEEEEE-EEES
T ss_pred ceeeeEEeeCCEEccccCCCCCceE-----EE-Eec--CCCCceEEE-EEcC
Confidence 3677888877777777543222211 11 111 234578988 5554
No 8
>d1uf2c2 b.19.1.1 (C:148-300) RDV p8, central (top) domain {Rice dwarf virus [TaxId: 10991]}
Probab=7.79 E-value=43 Score=22.40 Aligned_cols=14 Identities=43% Similarity=0.783 Sum_probs=11.3
Q ss_pred chhcccccceehhh
Q psy13719 111 FERHKLLFGVRIIE 124 (139)
Q Consensus 111 ~~~~~~~~~~~~~~ 124 (139)
-+|.||+||+|..-
T Consensus 40 aEr~ri~fG~RS~n 53 (153)
T d1uf2c2 40 AERRRILFGIRSNA 53 (153)
T ss_dssp ECSSEEEEEECCSS
T ss_pred EecCeEEEeeccCC
Confidence 37999999999654
No 9
>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed (Calystegia sepium) [TaxId: 47519]}
Probab=7.32 E-value=99 Score=20.68 Aligned_cols=14 Identities=21% Similarity=0.420 Sum_probs=11.1
Q ss_pred CCCCeEEEeceeEe
Q psy13719 7 YSQEGVYVCGLFLE 20 (139)
Q Consensus 7 ~p~~Gv~V~GL~LE 20 (139)
.+..++.||||+=+
T Consensus 34 ~~~~~ftIHGLWP~ 47 (207)
T d1jy5a_ 34 EVETGFTIKGLWPD 47 (207)
T ss_dssp TSCSCEEEEEEEEE
T ss_pred CCCCCceEeccccc
Confidence 34679999999865
No 10
>d1iqqa_ d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyrifolia) [TaxId: 3767]}
Probab=6.20 E-value=1.3e+02 Score=20.10 Aligned_cols=16 Identities=19% Similarity=0.071 Sum_probs=12.2
Q ss_pred CCCCCeEEEeceeEec
Q psy13719 6 FYSQEGVYVCGLFLEG 21 (139)
Q Consensus 6 ~~p~~Gv~V~GL~LEG 21 (139)
.++...+.||||+=+.
T Consensus 24 ~~~~~~fTIHGLWP~~ 39 (200)
T d1iqqa_ 24 DPPDKLFTVHGLWPSN 39 (200)
T ss_dssp SCCCSSEEEEEEEEEC
T ss_pred CCCCCCeEEEcccCCC
Confidence 3566789999999753
Done!