RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13719
         (139 letters)



>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
            microtubles, motor protein; HET: ADP SPM; 2.81A
            {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
          Length = 3245

 Score =  109 bits (274), Expect = 5e-29
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 9    QEGVYVCGLFLEGAGWNKSNRSLCEPLPLQLIYKLPVLHCKPVVNQ---HKPLDTLYECP 65
                 V G+ LEGA WN    +  + L       + +                 +    P
Sbjct: 3149 GASFNVKGMALEGAVWNNDQLTPTDILSTP----ISIATLTWKDKDDPIFNNSSSKLSVP 3204

Query: 66   VYYTAKRGEYIVPVGLDSGE-IPPDHWVKRGTAILLTLS 103
            VY    R E +  + L   +     +W +R  +I    S
Sbjct: 3205 VYLNETRSELLFSIDLPYDQSTSKQNWYQRSVSISSWKS 3243



 Score = 27.9 bits (62), Expect = 1.3
 Identities = 5/20 (25%), Positives = 9/20 (45%)

Query: 106  TCQGLFERHKLLFGVRIIEI 125
              + L    KL F +++  I
Sbjct: 2470 VTRTLLNDDKLTFALQLTII 2489


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.0 bits (80), Expect = 0.005
 Identities = 24/124 (19%), Positives = 33/124 (26%), Gaps = 59/124 (47%)

Query: 43  LPV---LHCK------PVVNQHKPLDTLY------ECPVYYTAKRGEYIVPVGLD----S 83
           LPV    H         ++N+    + +       + PVY T          G D    S
Sbjct: 421 LPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFD--------GSDLRVLS 472

Query: 84  GEIPPD----------HWVK----RGTAILL----------TLSSDTCQGLFERHKLLFG 119
           G I              W      + T IL            L+     G         G
Sbjct: 473 GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT--------G 524

Query: 120 VRII 123
           VR+I
Sbjct: 525 VRVI 528


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 29.1 bits (64), Expect = 0.49
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 13/67 (19%)

Query: 28  NRSLCEPLPLQLIYKLPVLHCKPVVNQHKPLDTLYECPVYYTAKR---GEYIVPVGLDSG 84
             SL E  P +    +P ++          L+   +    Y   R     Y +P   DS 
Sbjct: 413 KYSLVEKQPKESTISIPSIY----------LELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Query: 85  EIPPDHW 91
           ++ P + 
Sbjct: 463 DLIPPYL 469


>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
            cytoplasmic; motor protein, AAA+ protein, ASCE protein,
            P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
            japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
          Length = 2695

 Score = 29.0 bits (65), Expect = 0.58
 Identities = 2/21 (9%), Positives = 10/21 (47%)

Query: 106  TCQGLFERHKLLFGVRIIEIF 126
                L ++ K++  + +  ++
Sbjct: 2289 FSTALDKKFKMIMAMTMFCLY 2309


>1i7d_A DNA topoisomerase III; decatenating enzyme, protein-DNA complex,
           single-stranded DNA, isomerase/DNA complex; HET: DNA;
           2.05A {Escherichia coli} SCOP: e.10.1.1 PDB: 2o5c_A*
           2o54_A* 2o59_A* 2o19_A* 2o5e_A* 1d6m_A*
          Length = 659

 Score = 27.2 bits (61), Expect = 2.0
 Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 2/17 (11%)

Query: 101 TLSSDTCQGLFERHKLL 117
            L  D CQ L+E HKL+
Sbjct: 312 VL--DICQKLYETHKLI 326


>1kxt_B Immunoglobulin VHH fragment; alpha 8 beta 8, beta barrel,
           hydrolase, immune system; 2.00A {Camelus dromedarius}
           SCOP: b.1.1.1
          Length = 127

 Score = 25.9 bits (58), Expect = 3.1
 Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 3/39 (7%)

Query: 66  VYYTAKRGEYIVPVGLDSGEIPPDHWVKRGTAILLTLSS 104
           VYY A        V        P++W  +GT   +T+SS
Sbjct: 92  VYYCAAGPGSGKLVVAGRTCYGPNYW-GQGT--QVTVSS 127


>1rjc_A 1D2L19, camelid heavy chain antibody; beta sandwich, immunoglobulin
           fold, protein-protein hetero C alpha-beta orthogonal
           bundle, immune system-hydrolase compl; 1.40A {Camelus
           dromedarius} SCOP: b.1.1.1 PDB: 1ri8_A 1xfp_A 1jtt_A
           2x6m_A 1zmy_A 1f2x_K
          Length = 137

 Score = 24.7 bits (55), Expect = 8.1
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 7/49 (14%)

Query: 56  KPLDTLYECPVYYTAKRGEYIVPVGLDSGEIPPDHWVKRGTAILLTLSS 104
           KP DT     +YY A            +      +W  +GT   +T+SS
Sbjct: 87  KPEDT----AMYYCAADTSTWYRGYCGTNPNYFSYW-GQGT--QVTVSS 128


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0625    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,168,409
Number of extensions: 116231
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 209
Number of HSP's successfully gapped: 10
Length of query: 139
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 55
Effective length of database: 4,356,429
Effective search space: 239603595
Effective search space used: 239603595
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.0 bits)