RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13719
         (139 letters)



>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable
           domain, VH {Human (Homo sapiens), cluster 1 [TaxId:
           9606]}
          Length = 128

 Score = 24.3 bits (52), Expect = 5.0
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%)

Query: 63  ECPVYYTAKRGEYIVPVGLDSGEIPPDHWVKRGTAILLTLSS 104
           +  VY+ A   E     G         HW   G   L+T+SS
Sbjct: 90  DTAVYFCAGVYEGEADEGEYDNNGFLKHW---GQGTLVTVSS 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.142    0.450 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 540,990
Number of extensions: 23503
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 34
Number of HSP's successfully gapped: 3
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (22.8 bits)