BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13720
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 261/491 (53%), Positives = 329/491 (67%), Gaps = 8/491 (1%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYM 60
+Y + ++ G Y+L VY+ P+ F F K S V+ K+ +E LYPE YRK SDY+
Sbjct: 635 VYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYI 694
Query: 61 KGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNK 120
KGSN P P+ IG I I K K V+ +D+ L + KFYRPENTHRS +Y D+N
Sbjct: 695 KGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINM 754
Query: 121 LYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPT 180
LYWSDEE V+ SDVQG+C V ++L S +S GP RFYF EAYNSKT+ F + P
Sbjct: 755 LYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPN 814
Query: 181 EA----LFLXXXXXXXXXXXNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDK 236
A +Q ++P+E + + P LR L+VF+G GGLS G +
Sbjct: 815 HARSPGNKGKGKGKGKGKGKHQVSEPKEPEAAIKLPK----LRTLDVFSGCGGLSEGFHQ 870
Query: 237 SGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEV 296
+G++ + WAIE AA AF++NNPG TVF +DCN +L+ V+ EV + Q+LP+KG+V
Sbjct: 871 AGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDV 930
Query: 297 EMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNS 356
EMLCGGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ S
Sbjct: 931 EMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRS 990
Query: 357 MVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPR 416
MVLK+T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR
Sbjct: 991 MVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPR 1050
Query: 417 TSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQ 476
QL+V + K +VS S P+RTITVRD MSDLPEIQNG E+PY LS FQ
Sbjct: 1051 ACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQ 1110
Query: 477 REKVWKCYSKI 487
R+ Y I
Sbjct: 1111 RQLRGSHYQPI 1121
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 520 bits (1338), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/491 (53%), Positives = 329/491 (67%), Gaps = 8/491 (1%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYM 60
+Y + ++ G Y+L VY+ P+ F F K S V+ K+ +E LYPE YRK SDY+
Sbjct: 196 VYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYI 255
Query: 61 KGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNK 120
KGSN P P+ IG I I K K V+ +D+ L + KFYRPENTHRS +Y D+N
Sbjct: 256 KGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINM 315
Query: 121 LYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPT 180
LYWSDEE V+ SDVQG+C V ++L S +S GP RFYF EAYNSKT+ F + P
Sbjct: 316 LYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPN 375
Query: 181 EA----LFLXXXXXXXXXXXNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDK 236
A +Q ++P+E + + P LR L+VF+G GGLS G +
Sbjct: 376 HARSPGNKGKGKGKGKGKGKHQVSEPKEPEAAIKLPK----LRTLDVFSGCGGLSEGFHQ 431
Query: 237 SGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEV 296
+G++ + WAIE AA AF++NNPG TVF +DCN +L+ V+ EV + Q+LP+KG+V
Sbjct: 432 AGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDV 491
Query: 297 EMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNS 356
EMLCGGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ S
Sbjct: 492 EMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRS 551
Query: 357 MVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPR 416
MVLK+T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR
Sbjct: 552 MVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPR 611
Query: 417 TSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQ 476
QL+V + K +VS S P+RTITVRD MSDLPEIQNG E+PY LS FQ
Sbjct: 612 ACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQ 671
Query: 477 REKVWKCYSKI 487
R+ Y I
Sbjct: 672 RQLRGSHYQPI 682
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 518 bits (1335), Expect = e-147, Method: Compositional matrix adjust.
Identities = 261/491 (53%), Positives = 329/491 (67%), Gaps = 8/491 (1%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYM 60
+Y + ++ G Y+L VY+ P+ F F K S V+ K+ +E LYPE YRK SDY+
Sbjct: 277 VYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYI 336
Query: 61 KGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNK 120
KGSN P P+ IG I I K K V+ +D+ L + KFYRPENTHRS +Y D+N
Sbjct: 337 KGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINM 396
Query: 121 LYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPT 180
LYWSDEE V+ SDVQG+C V ++L S +S GP RFYF EAYNSKT+ F + P
Sbjct: 397 LYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPN 456
Query: 181 EA----LFLXXXXXXXXXXXNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDK 236
A +Q ++P+E + + P LR L+VF+G GGLS G +
Sbjct: 457 HARSPGNKGKGKGKGKGKGKHQVSEPKEPEAAIKLPK----LRTLDVFSGCGGLSEGFHQ 512
Query: 237 SGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEV 296
+G++ + WAIE AA AF++NNPG TVF +DCN +L+ V+ EV + Q+LP+KG+V
Sbjct: 513 AGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDV 572
Query: 297 EMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNS 356
EMLCGGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ S
Sbjct: 573 EMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRS 632
Query: 357 MVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPR 416
MVLK+T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR
Sbjct: 633 MVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPR 692
Query: 417 TSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQ 476
QL+V + K +VS S P+RTITVRD MSDLPEIQNG E+PY LS FQ
Sbjct: 693 ACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQ 752
Query: 477 REKVWKCYSKI 487
R+ Y I
Sbjct: 753 RQLRGSHYQPI 763
>pdb|3SWR|A Chain A, Structure Of Human Dnmt1 (601-1600) In Complex With
Sinefungin
Length = 1002
Score = 496 bits (1277), Expect = e-140, Method: Compositional matrix adjust.
Identities = 251/483 (51%), Positives = 321/483 (66%), Gaps = 10/483 (2%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYM 60
LYY+ + G Y++ VY+ P+ F F K S V+ ++ DE+LYPE YRK SDY+
Sbjct: 324 LYYS-ATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYI 382
Query: 61 KGSNAYTPAPFGIGYIVAIF-KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLN 119
KGSN P P+ IG I IF KK + +D+ + V KFYRPENTH+S +Y D+N
Sbjct: 383 KGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADIN 442
Query: 120 KLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLP 179
LYWSDEE V VQG+C V ++L +S GP+RFYF EAYN+K++ F + P
Sbjct: 443 LLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSFEDPP 502
Query: 180 TEA----LFLXXXXXXXXXXXNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLD 235
A +Q +P E + + P LR L+VF+G GGLS G
Sbjct: 503 NHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPK----LRTLDVFSGCGGLSEGFH 558
Query: 236 KSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 295
++G++ + WAIE AA AF++NNPG TVF +DCN +L+ V+ E + + Q+LP+KG+
Sbjct: 559 QAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGD 618
Query: 296 VEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKN 355
VEMLCGGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+FK
Sbjct: 619 VEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKR 678
Query: 356 SMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSP 415
SMVLK+T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+P
Sbjct: 679 SMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAP 738
Query: 416 RTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHF 475
R QL+V + K +VS S P+RTITVRD MSDLPE++NG E+ Y S F
Sbjct: 739 RACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWF 798
Query: 476 QRE 478
QR+
Sbjct: 799 QRQ 801
>pdb|3PTA|A Chain A, Crystal Structure Of Human Dnmt1(646-1600) In Complex With
Dna
Length = 956
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 251/483 (51%), Positives = 321/483 (66%), Gaps = 10/483 (2%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYM 60
LYY+ + G Y++ VY+ P+ F F K S V+ ++ DE+LYPE YRK SDY+
Sbjct: 278 LYYS-ATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYI 336
Query: 61 KGSNAYTPAPFGIGYIVAIF-KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLN 119
KGSN P P+ IG I IF KK + +D+ + V KFYRPENTH+S +Y D+N
Sbjct: 337 KGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADIN 396
Query: 120 KLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLP 179
LYWSDEE V VQG+C V ++L +S GP+RFYF EAYN+K++ F + P
Sbjct: 397 LLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSFEDPP 456
Query: 180 TEA----LFLXXXXXXXXXXXNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLD 235
A +Q +P E + + P LR L+VF+G GGLS G
Sbjct: 457 NHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPK----LRTLDVFSGCGGLSEGFH 512
Query: 236 KSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 295
++G++ + WAIE AA AF++NNPG TVF +DCN +L+ V+ E + + Q+LP+KG+
Sbjct: 513 QAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGD 572
Query: 296 VEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKN 355
VEMLCGGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+FK
Sbjct: 573 VEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKR 632
Query: 356 SMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSP 415
SMVLK+T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+P
Sbjct: 633 SMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAP 692
Query: 416 RTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHF 475
R QL+V + K +VS S P+RTITVRD MSDLPE++NG E+ Y S F
Sbjct: 693 RACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWF 752
Query: 476 QRE 478
QR+
Sbjct: 753 QRQ 755
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 4/194 (2%)
Query: 286 KKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQ--YSAFKNSLIVSYLSYCDYYRPRFFL 343
K++ LP G+V+++CGGPPCQG SG NR+ R KN +V+++ Y +P++ L
Sbjct: 370 KRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVL 429
Query: 344 LENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVL 403
+ENV + + F + + K + CL + YQ G + AG +G+ Q R R + A VL
Sbjct: 430 MENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVL 489
Query: 404 PKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKME 463
PKYP P R N + V+ + + + + + + D +SDLP++QN +
Sbjct: 490 PKYPLPTYDVVVRGGAPNAF--SQCMVAYDETQKPSLKKALLLGDAISDLPKVQNHQPND 547
Query: 464 ELPYKENALSHFQR 477
+ Y + + FQR
Sbjct: 548 VMEYGGSPKTEFQR 561
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 105/257 (40%), Gaps = 38/257 (14%)
Query: 40 KRPVEDEELYPEAYRKLSD-----YMKGSNAYTPAPFG----IGYIVAIFKKKGKKNVSA 90
K+P E+EEL + + + Y G + Y A IG I F+ + +
Sbjct: 34 KKPDEEEELKARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCH--- 90
Query: 91 SDVFLTVKKFYRPENTHRSVEFTYQLDLNK-----LYWSDEEEQVSLSDVQGKCFVVCED 145
+ T + F+R E+T + + +D +K ++ S+E+ L + K +V D
Sbjct: 91 ---YFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD 147
Query: 146 NLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLXXXXXXXXXXXNQTNKPEEK 205
+ Y++ +Y+ F N+ +E + T
Sbjct: 148 PNMDPKAKAQLIESCDLYYDMSYSVAYSTFANISSE----------NGQSGSDTASGISS 197
Query: 206 DEITEWPSIARPLRC---LEVFAGAGGLSRGL----DKSGVARST-WAIEFDSAAATAFK 257
D++ S + P R L++++G GG+S GL SG+ T WA++F+S A + K
Sbjct: 198 DDVDLETSSSMPTRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLK 257
Query: 258 MNNPGCTVFVDDCNKIL 274
N+P V + ++ L
Sbjct: 258 YNHPQTEVRNEKADEFL 274
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 96/194 (49%), Gaps = 4/194 (2%)
Query: 286 KKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQ--YSAFKNSLIVSYLSYCDYYRPRFFL 343
K++ LP G+V+++CGGPPCQG SG NR+ R KN V++ Y +P++ L
Sbjct: 370 KRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQXVTFXDIVAYLKPKYVL 429
Query: 344 LENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVL 403
ENV + + F + + K + CL YQ G AG +G+ Q R R + A VL
Sbjct: 430 XENVVDILKFADGYLGKYALSCLVAXKYQARLGXXVAGCYGLPQFRXRVFLWGALSSXVL 489
Query: 404 PKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKME 463
PKYP P R N + V+ + + + + + + D +SDLP++QN +
Sbjct: 490 PKYPLPTYDVVVRGGAPNAF--SQCXVAYDETQKPSLKKALLLGDAISDLPKVQNHQPND 547
Query: 464 ELPYKENALSHFQR 477
Y + + FQR
Sbjct: 548 VXEYGGSPKTEFQR 561
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 38/257 (14%)
Query: 40 KRPVEDEELYPEAYRKLSD-----YMKGSNAYTPAPFG----IGYIVAIFKKKGKKNVSA 90
K+P E+EEL + + + Y G + Y A IG I F+ + +
Sbjct: 34 KKPDEEEELKARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCH--- 90
Query: 91 SDVFLTVKKFYRPENTHRSVEFTYQLDLNK-----LYWSDEEEQVSLSDVQGKCFVVCED 145
+ T + F+R E+T + + +D +K ++ S+E+ L + K +V D
Sbjct: 91 ---YFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD 147
Query: 146 NLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLXXXXXXXXXXXNQTNKPEEK 205
+ Y++ +Y+ F N+ +E + T
Sbjct: 148 PNXDPKAKAQLIESCDLYYDXSYSVAYSTFANISSE----------NGQSGSDTASGISS 197
Query: 206 DEITEWPSIARPLRC---LEVFAGAGGLSRGL----DKSGVARST-WAIEFDSAAATAFK 257
D++ S + P R L++++G GG S GL SG+ T WA++F+S A + K
Sbjct: 198 DDVDLETSSSXPTRTATLLDLYSGCGGXSTGLCLGAALSGLKLETRWAVDFNSFACQSLK 257
Query: 258 MNNPGCTVFVDDCNKIL 274
N+P V + ++ L
Sbjct: 258 YNHPQTEVRNEKADEFL 274
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
pdb|1DCT|B Chain B, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To
Dna
Length = 324
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
+ + +F+GAGGL G K+G R A E+D + ++ N+ ++
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-------------KL 46
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
I ++ + P+ + + GGPPCQ +S R + L Y+
Sbjct: 47 IKGDISKISSDEFPK---CDGIIGGPPCQSWSEGGSL--RGIDDPRGKLFYEYIRILKQK 101
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
+P FFL ENV+ +A +++ ++ ++ GY L A +GV+Q R+R +
Sbjct: 102 KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIG 160
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna
Methyltransferase Homologue
Length = 343
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 86/207 (41%), Gaps = 36/207 (17%)
Query: 217 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 275
PLR LE+++G GG+ L +S + A+ AI+ ++ A +K N P + I
Sbjct: 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 61
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 335
D D M+ PPCQ F+ + R +S S+L D
Sbjct: 62 EEFDRLSFD-------------MILMSPPCQPFTRIGR-----QGDMTDSRTNSFLHILD 103
Query: 336 YY-----RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRR 390
P++ LLENV+ F+ S + ++ + G+Q L G+ +R
Sbjct: 104 ILPRLQKLPKYILLENVK---GFEVSSTRDLLIQTIENXGFQYQEFLLSPTSLGIPNSRL 160
Query: 391 RAIVLA---------AAPGEVLPKYPE 408
R ++A APG+VL ++P+
Sbjct: 161 RYFLIAKLQSEPLPFQAPGQVLMEFPK 187
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With
13mer Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 100/236 (42%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSIQGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ +ENV+NF + N L++ + ++ Y L A +G+ Q R R ++
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|3ME5|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 482
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN---NPGCTVFVDDCNKIL 274
R +++FAG GG+ RG + G + + E++ A +K N +P F +D I
Sbjct: 89 FRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDIT 147
Query: 275 ----QRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS--GMNRFNQ-RQYSAF----K 323
+ V D + +Q +P E ++L G PCQ FS G+++ N + F +
Sbjct: 148 LSHQEGVSDEAAAEHIRQHIP---EHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQ 204
Query: 324 NSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCT 374
+L + D RP F+LENV+N + ++ + L ++GY
Sbjct: 205 GTLFFDVVRIIDARRPAXFVLENVKNLKSHDKGKTFRIIXQTLDELGYDVA 255
>pdb|3LX6|A Chain A, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
pdb|3LX6|B Chain B, Crystal Structure Of Putative Dna Cytosine Methylase From
Shigella Flexneri 2a Str. 2457t
Length = 410
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 18/171 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN---NPGCTVFVDDCNKIL 274
R +++FAG GG+ RG + G + + E++ A +K N +P F +D I
Sbjct: 27 FRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDIT 85
Query: 275 ----QRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS--GMNRFNQ-RQYSAF----K 323
+ V D + +Q +P E ++L G PCQ FS G+++ N + F +
Sbjct: 86 LSHQEGVSDEAAAEHIRQHIP---EHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQ 142
Query: 324 NSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCT 374
+L + D RP F+LENV+N + ++ + L ++GY
Sbjct: 143 GTLFFDVVRIIDARRPAXFVLENVKNLKSHDKGKTFRIIXQTLDELGYDVA 193
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna
And S-Adenosyl-L-Homocysteine
pdb|3MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Unmodified Dna And Adohcy
pdb|4MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Native
Dna And Adohcy
pdb|5MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With
Hemimethylated Dna And Adohcy
pdb|6MHT|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Dna Containing 4'-Thio-2'deoxycytidine At The Target
pdb|7MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|8MHT|A Chain A, Cytosine-Specific Methyltransferase HhaiDNA COMPLEX
pdb|9MHT|A Chain A, Cytosine-specific Methyltransferase Hhai/dna Complex
pdb|10MH|A Chain A, Ternary Structure Of Hhai Methyltransferase With Adohcy
And Hemimethylated Dna Containing
5,6-Dihydro-5-Azacytosine At The Target
pdb|2HMY|B Chain B, Binary Complex Of Hhai Methyltransferase With Adomet
Formed In The Presence Of A Short Nonpsecific Dna
Oligonucleotide
pdb|1M0E|A Chain A, Zebularine: A Novel Dna Methylation Inhibitor That Forms A
Covalent Complex With Dna Methyltransferase
pdb|1SKM|A Chain A, Hhai Methyltransferase In Complex With Dna Containing An
Abasic South Carbocyclic Sugar At Its Target Site
pdb|2C7O|A Chain A, Hhai Dna Methyltransferase Complex With 13mer
Oligonucleotide Containing 2-Aminopurine Adjacent To The
Target Base (Pcgc:gmgc) And Sah
pdb|2C7P|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Opposite To The Target Base (
Gcgc:gmpc) And Sah
pdb|2C7Q|A Chain A, Hhai Dna Methyltransferase Complex With Oligonucleotide
Containing 2-Aminopurine Outside The Recognition
Sequence (Paired With G) And Sah
pdb|2HR1|A Chain A, Ternary Structure Of Wt M.hhai C5-cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
pdb|1HMY|A Chain A, Crystal Structure Of The Hhai Dna Methyltransferase
Complexed With S- Adenosyl-L-Methionine
pdb|3EEO|A Chain A, M. Hhai Co-Crystallized With Synthetic Dsdna Containing A
Propane Diol In Place Of The Deoxycytidine Residue
Targeted For Methylation
Length = 327
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 100/236 (42%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ +ENV+NF + N L++ + ++ Y L A +G+ Q R R ++
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase
Mutant (T250g) In Complex With Dna And Adohcy
pdb|2C7R|A Chain A, Hhai Dna Methyltransferase (T250g Mutant) Complex With
Oligonucleotide Containing 2-Aminopurine As A Target
Base (Gpgc:gmgc) And Sah
Length = 327
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 100/236 (42%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ +ENV+NF + N L++ + ++ Y L A +G+ Q R R ++
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
pdb|1SVU|B Chain B, Structure Of The Q237w Mutant Of Hhai Dna
Methyltransferase: An Insight Into Protein-Protein
Interactions
Length = 327
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 100/236 (42%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ +ENV+NF + N L++ + ++ Y L A +G+ Q R R ++
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|A Chain A, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
pdb|3UBT|B Chain B, Crystal Structure Of C71s Mutant Of Dna Cytosine-5
Methyltransferase M.Haeiii Bound To Dna
Length = 331
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 19/179 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
+ + +F+GAGGL G K+G R A E+D + ++ N+ ++
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-------------KL 46
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
I ++ + P+ + + GGPP Q +S R + L Y+
Sbjct: 47 IKGDISKISSDEFPK---CDGIIGGPPSQSWSEGGSL--RGIDDPRGKLFYEYIRILKQK 101
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
+P FFL ENV+ +A +++ ++ ++ GY L A +GV+Q R+R +
Sbjct: 102 KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIG 160
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna
Methyltransferase With Unmodified Dna And Adohcy
Length = 327
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/237 (21%), Positives = 102/237 (43%), Gaps = 31/237 (13%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ +ENV+NF + N L++ + ++ Y L A +G+ Q +R AI +
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQ-KREAIYMIC 170
Query: 398 APGEVLP---KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
++ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 171 FRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 100/236 (42%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ ++NV+NF + N L++ + ++ Y L A +G+ Q R R ++
Sbjct: 112 KPKVVFMQNVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ +ENV+NF + N L++ + ++ Y L A +G+ Q R ++
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRENIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer
Gcgc-Gmgc Oligonucleotide And Sah
Length = 327
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ +ENV+NF + N L++ + ++ Y L A +G+ Q R ++
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKNERIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna
Methyltransferase, With Unmodified Dna And Adohcy
Length = 327
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ + NV+NF + N L++ + ++ Y L A +G+ Q R R ++
Sbjct: 112 KPKVVFMANVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification
Methyltransferase Encoded Within Prophage Cp-933r
(E.Coli)
Length = 376
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 65/141 (46%), Gaps = 12/141 (8%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
L +++F+G GGLS G ++G A+E D A +N P +D + + +
Sbjct: 3 LNVIDLFSGVGGLSLGAARAGFDVKM-AVEIDQHAINTHAINFPRSLHVQEDVSLLNAEI 61
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
I +D +P ++ + GGPPCQGFS + + N +N L + +
Sbjct: 62 IKGFFKND----MP----IDGIIGGPPCQGFSSIGKGNPDDS---RNQLYMHFYRLVSEL 110
Query: 338 RPRFFLLENVRNFVAFKNSMV 358
+P FFL ENV + K S +
Sbjct: 111 QPLFFLAENVPGIMQEKYSGI 131
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer:
Observable Precatalytic Intermediates During Dna
Cytosine Methylation
Length = 327
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G P Q FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPAQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ +ENV+NF + N L++ + ++ Y L A +G+ Q R R ++
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances
Sequence Discrimination Of Dna Methyltransferase M.Hhai
Length = 327
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/236 (21%), Positives = 99/236 (41%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ +ENV+N + N L++ + ++ Y L A +G+ Q R R ++
Sbjct: 112 KPKVVFMENVKNAASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|B Chain B, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|C Chain C, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
pdb|4H0N|D Chain D, Crystal Structure Of Spodoptera Frugiperda Dnmt2
E260a/e261a/k263a Mutant
Length = 333
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 26/178 (14%)
Query: 219 RCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
+ LE+++G GG+ +SG+ A++ ++ A + +K N P + + ++ +V
Sbjct: 5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRF---NQRQYSAFKNSL-IVSYLSY 333
I +K V+ + PPCQ F+ ++ N + ++F + I+ L
Sbjct: 65 I-------------KKWNVDTILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDN 111
Query: 334 CDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRR 391
DY L+ENV+ F+NS V + + L + + L GV +R R
Sbjct: 112 VDY-----ILMENVK---GFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLR 161
>pdb|4DKJ|A Chain A, Cpg Specific Methyltransferase In Complex With Target Dna
Length = 403
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 85/209 (40%), Gaps = 20/209 (9%)
Query: 257 KMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS------G 310
K+NN +++ K + D + K P+ +++ PCQ S G
Sbjct: 91 KINNTIKASYLNYAKKHFNNLFD--IKKVNKDNFPK--NIDIFTYSFPCQDLSVQGLQKG 146
Query: 311 MNR-FNQRQYSAFKNSLIVSYL--SYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLT 367
+++ N R ++ I+ + S+ P++ L+ENV+N ++ KN ++ L
Sbjct: 147 IDKELNTRSGLLWEIERILEEIKNSFSKEEMPKYLLMENVKNLLSHKNKKNYNTWLKQLE 206
Query: 368 QIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLP---KYPEPWTVFSPRTSQLNVTI 424
+ GY+ L + +F Q R R L+ + K+ E V +P ++ +
Sbjct: 207 KFGYKSKTYLLNSKNFDNCQNRERVFCLSIRDDYLEKTGFKFKELEKVKNPPKKIKDILV 266
Query: 425 SKKTYVSTCKWTQSAPYRTITVRDVMSDL 453
Y K+ Y T T R+ S++
Sbjct: 267 DSSNY----KYLNLNKYETTTFRETKSNI 291
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica
Methyltransferase Ehmeth
Length = 327
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 34/192 (17%)
Query: 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 275
+ + +E F+G GGL ++S + + I FD NKI
Sbjct: 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIA----------------NKIYS 52
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCG----GPPCQGF--SGMNRFNQRQYSAFKNSL--- 326
+ EV + K + C PPCQ + S M++ K+ L
Sbjct: 53 KNFKEEVQVKNLDSISIKQIESLNCNTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLY 112
Query: 327 --IVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFG 384
I+ YL +P+ +ENV FK S+V K L + Y G
Sbjct: 113 RDILPYL----INKPKHIFIENVP---LFKESLVFKEIYNILIKNQYYIKDIICSPIDIG 165
Query: 385 VSQTRRRAIVLA 396
+ +R R V+A
Sbjct: 166 IPNSRTRYYVMA 177
>pdb|3B3Q|A Chain A, Crystal Structure Of A Synaptic Adhesion Complex
pdb|3B3Q|B Chain B, Crystal Structure Of A Synaptic Adhesion Complex
Length = 577
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 40/117 (34%), Gaps = 38/117 (32%)
Query: 217 PLRCLEVFAGAGG---------------LSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 261
PLR +GAGG R + +SG A S+WA+ F A
Sbjct: 223 PLRITVFGSGAGGSCVNLLTLSHYSEGLFQRAIAQSGTALSSWAVSFQPAKYARILATKV 282
Query: 262 GC----TVFVDDC-------------------NKILQRVIDNEVCDDKKQKLPRKGE 295
GC TV + +C + VID +V D Q L +GE
Sbjct: 283 GCQVSDTVELVECLQKKPYKELVDQDVQPARYHIAFGPVIDGDVIPDDPQILMEQGE 339
>pdb|3VKF|A Chain A, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
pdb|3VKF|B Chain B, Crystal Structure Of Neurexin 1betaNEUROLIGIN 1 COMPLEX
Length = 585
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 40/117 (34%), Gaps = 38/117 (32%)
Query: 217 PLRCLEVFAGAGG---------------LSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 261
PLR +GAGG R + +SG A S+WA+ F A
Sbjct: 228 PLRITVFGSGAGGSCVNLLTLSHYSEGLFQRAIAQSGTALSSWAVSFQPAKYARILATKV 287
Query: 262 GC----TVFVDDC-------------------NKILQRVIDNEVCDDKKQKLPRKGE 295
GC TV + +C + VID +V D Q L +GE
Sbjct: 288 GCNVSDTVELVECLQKKPYKELVDQDVQPARYHIAFGPVIDGDVIPDDPQILMEQGE 344
>pdb|3BIW|A Chain A, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|B Chain B, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|C Chain C, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIW|D Chain D, Crystal Structure Of The Neuroligin-1NEUREXIN-1beta
Synaptic Adhesion Complex
pdb|3BIX|A Chain A, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|B Chain B, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|C Chain C, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
pdb|3BIX|D Chain D, Crystal Structure Of The Extracellular Esterase Domain Of
Neuroligin-1
Length = 574
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 40/118 (33%), Gaps = 39/118 (33%)
Query: 217 PLRCLEVFAGAGG----------------LSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260
PLR +GAGG R + +SG A S+WA+ F A
Sbjct: 210 PLRITVFGSGAGGSCVNLLTLSHYSEKGLFQRAIAQSGTALSSWAVSFQPAKYARILATK 269
Query: 261 PGC----TVFVDDC-------------------NKILQRVIDNEVCDDKKQKLPRKGE 295
GC TV + +C + VID +V D Q L +GE
Sbjct: 270 VGCNVSDTVELVECLQKKPYKELVDQDVQPARYHIAFGPVIDGDVIPDDPQILMEQGE 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,914,498
Number of Sequences: 62578
Number of extensions: 612581
Number of successful extensions: 1353
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1267
Number of HSP's gapped (non-prelim): 53
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)