BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13720
(487 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13864|DNMT1_MOUSE DNA (cytosine-5)-methyltransferase 1 OS=Mus musculus GN=Dnmt1 PE=1
SV=5
Length = 1620
Score = 522 bits (1344), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/491 (54%), Positives = 336/491 (68%), Gaps = 8/491 (1%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYM 60
+Y + ++ G Y+L VY+ P+ F F K S V+ K+ +E LYPE YRK SDY+
Sbjct: 925 VYCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYI 984
Query: 61 KGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNK 120
KGSN P P+ IG I I K K V+ +D+ L + KFYRPENTHRS +Y D+N
Sbjct: 985 KGSNLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINM 1044
Query: 121 LYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPT 180
LYWSDEE V+ SDVQG+C V ++L S +S GP RFYF EAYNSKT+ F + P
Sbjct: 1045 LYWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPN 1104
Query: 181 EA----LFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDK 236
A KGKGKGK+Q ++P+E + + P LR L+VF+G GGLS G +
Sbjct: 1105 HARSPGNKGKGKGKGKGKGKHQVSEPKEPEAAIKLPK----LRTLDVFSGCGGLSEGFHQ 1160
Query: 237 SGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEV 296
+G++ + WAIE AA AF++NNPG TVF +DCN +L+ V+ EV + Q+LP+KG+V
Sbjct: 1161 AGISETLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDV 1220
Query: 297 EMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNS 356
EMLCGGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ S
Sbjct: 1221 EMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRS 1280
Query: 357 MVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPR 416
MVLK+T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+PR
Sbjct: 1281 MVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPR 1340
Query: 417 TSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQ 476
QL+V + K +VS S P+RTITVRD MSDLPEIQNG E+PY LS FQ
Sbjct: 1341 ACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQ 1400
Query: 477 REKVWKCYSKI 487
R+ Y I
Sbjct: 1401 RQLRGSHYQPI 1411
>sp|Q24K09|DNMT1_BOVIN DNA (cytosine-5)-methyltransferase 1 OS=Bos taurus GN=DNMT1 PE=2 SV=1
Length = 1611
Score = 509 bits (1312), Expect = e-143, Method: Compositional matrix adjust.
Identities = 259/492 (52%), Positives = 329/492 (66%), Gaps = 9/492 (1%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYM 60
+ Y+ + G QY++ VY+ P+ F F K S V+ ++ DE LYPE YRK SDY+
Sbjct: 918 VLYSLATKNGVQYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEALYPEHYRKYSDYI 977
Query: 61 KGSNAYTPAPFGIGYIVAIF-KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLN 119
KGSN P P+ IG I IF KK + +D+ + V KFYRPENTH+S +Y D+N
Sbjct: 978 KGSNLDAPEPYRIGRIKEIFCSKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADIN 1037
Query: 120 KLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLP 179
LYWSDEE V VQG+C V ++L +S+ GP RFYF EAYN+K++ F + P
Sbjct: 1038 LLYWSDEEAVVDFKAVQGRCTVEYGEDLPQCLQDFSAGGPDRFYFLEAYNAKSKSFEDPP 1097
Query: 180 TEA----LFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLD 235
A KGK + K+QT +P E + + P LR L+VF+G GGLS G
Sbjct: 1098 NHARSTGNKGKGKGKGKNRTKSQTCEPSELETEIKLPK----LRTLDVFSGCGGLSEGFH 1153
Query: 236 KSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 295
++G++ + WAIE AA AF++NNPG TVF +DCN +L+ V+ EV + + QKLP+KG+
Sbjct: 1154 QAGISETLWAIEMWDPAAQAFRLNNPGSTVFTEDCNVLLKLVMAGEVTNSRGQKLPQKGD 1213
Query: 296 VEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKN 355
VEMLCGGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPR+FLLENVRNFV+FK
Sbjct: 1214 VEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRYFLLENVRNFVSFKR 1273
Query: 356 SMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSP 415
SMVLK+T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+P
Sbjct: 1274 SMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEPLPLFPEPLHVFAP 1333
Query: 416 RTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHF 475
R QL+V + K +VS S P+RTITVRD MSDLPEI+NG E+ Y S F
Sbjct: 1334 RACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIRNGASALEISYNGEPQSWF 1393
Query: 476 QREKVWKCYSKI 487
QR+ Y I
Sbjct: 1394 QRQLRGSQYQPI 1405
>sp|Q92072|DNMT1_CHICK DNA (cytosine-5)-methyltransferase 1 OS=Gallus gallus GN=DNMT1 PE=1
SV=1
Length = 1537
Score = 506 bits (1303), Expect = e-142, Method: Compositional matrix adjust.
Identities = 266/488 (54%), Positives = 333/488 (68%), Gaps = 15/488 (3%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYM 60
++Y + G QY++ VY+ P+ F F KP S + K+ DE+LYPE YRK S+Y+
Sbjct: 832 MFYAMATKNGVQYRVGDSVYLLPEAFSFSMKPASPAKRPKKEAVDEDLYPEHYRKYSEYI 891
Query: 61 KGSNAYTPAPFGIGYIVAIF---KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLD 117
KGSN P P+ +G I IF + GK N +D+ L + KFYRPENTH+S++ TY D
Sbjct: 892 KGSNLDAPDPYRVGRIKEIFCHIRTNGKPN--EADIKLRIWKFYRPENTHKSMKATYHAD 949
Query: 118 LNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTN 177
+N LYWSDEE V VQG+C VV ++L S +S+ G RFYF EAYN+KT+ F +
Sbjct: 950 INLLYWSDEETTVDFCAVQGRCTVVYGEDLTESIQDYSAGGLDRFYFLEAYNAKTKSFED 1009
Query: 178 LPTEA------LFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARP-LRCLEVFAGAGGL 230
P A KGKGKGK+ T + + E TE + P LR L+VF+G GGL
Sbjct: 1010 PPNHARSSGNKGKGKGKGKGKGKGKSSTTCEQSEPEPTE---LKLPKLRTLDVFSGCGGL 1066
Query: 231 SRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKL 290
S G ++GV+ + WAIE AA AF++NNPG TVF +DCN +L+ V+ E + QKL
Sbjct: 1067 SEGFHQAGVSETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLLKLVMSGEKTNSLGQKL 1126
Query: 291 PRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNF 350
P+KG+VEMLCGGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNF
Sbjct: 1127 PQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNF 1186
Query: 351 VAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPW 410
V+FK SMVLK+T+RCL ++GYQCTFG LQAG +GV+QTRRRAIVLAAAPGE LP +PEP
Sbjct: 1187 VSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIVLAAAPGEKLPMFPEPL 1246
Query: 411 TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKEN 470
VF+PR QL+V + K +VS T S P+RTITVRD MSDLPEI+NG E+ Y
Sbjct: 1247 HVFAPRACQLSVVVDDKKFVSNITRTYSGPFRTITVRDTMSDLPEIRNGASALEISYNGE 1306
Query: 471 ALSHFQRE 478
S FQR+
Sbjct: 1307 PQSWFQRQ 1314
>sp|Q9Z330|DNMT1_RAT DNA (cytosine-5)-methyltransferase 1 OS=Rattus norvegicus GN=Dnmt1
PE=1 SV=2
Length = 1622
Score = 503 bits (1295), Expect = e-141, Method: Compositional matrix adjust.
Identities = 260/478 (54%), Positives = 333/478 (69%), Gaps = 12/478 (2%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKR-PVEDEELYPEAYRKLSDY 59
+Y + ++ G Y+L VY+ P+ F F K S ++ +KR PV + + + YRK SDY
Sbjct: 925 VYCSSITKNGVVYRLGDSVYLPPEAFTFNIKMASPMKRSKRDPVNENPVPRDTYRKYSDY 984
Query: 60 MKGSNAYTPAPFGIGYIVAIF--KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLD 117
+KGSN P P+ IG I I+ KKKG K V+ +D+ + + KFYRPENTH+S++ TY D
Sbjct: 985 IKGSNLDAPEPYRIGRIKEIYCGKKKGGK-VNEADIKIRLYKFYRPENTHKSIQATYHAD 1043
Query: 118 LNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTN 177
+N LYWSDEE V SDVQG+C V ++L S +S GP RFYF EAYNSKT+ F +
Sbjct: 1044 INLLYWSDEEAVVDFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKSFED 1103
Query: 178 LPTEA----LFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRG 233
P A KGKGKGK Q ++P+E + + P LR L+VF+G GGL+ G
Sbjct: 1104 PPNHARSPGNKGKGKGKGKGKGKPQVSEPKEPEAAIKLPK----LRTLDVFSGCGGLTEG 1159
Query: 234 LDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 293
++G++ + WAIE AA AF++NNPG TVF +DCN +L+ V+ EV + Q+LP+K
Sbjct: 1160 FHQAGISETLWAIEMWEPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQK 1219
Query: 294 GEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAF 353
G+VEMLCGGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+F
Sbjct: 1220 GDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSF 1279
Query: 354 KNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVF 413
+ SMVLK+T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF
Sbjct: 1280 RRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVF 1339
Query: 414 SPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENA 471
+PR QL+V + K +VS S P+RTIT+RD MSDLPEIQNG E+ YK A
Sbjct: 1340 APRACQLSVVVDDKKFVSNITRLSSGPFRTITMRDTMSDLPEIQNGASAPEISYKWRA 1397
>sp|P26358|DNMT1_HUMAN DNA (cytosine-5)-methyltransferase 1 OS=Homo sapiens GN=DNMT1 PE=1
SV=2
Length = 1616
Score = 501 bits (1291), Expect = e-141, Method: Compositional matrix adjust.
Identities = 259/492 (52%), Positives = 329/492 (66%), Gaps = 10/492 (2%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYM 60
LYY+ + G Y++ VY+ P+ F F K S V+ ++ DE+LYPE YRK SDY+
Sbjct: 922 LYYS-ATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYI 980
Query: 61 KGSNAYTPAPFGIGYIVAIF-KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLN 119
KGSN P P+ IG I IF KK + +D+ + V KFYRPENTH+S +Y D+N
Sbjct: 981 KGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADIN 1040
Query: 120 KLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLP 179
LYWSDEE V VQG+C V ++L +S GP+RFYF EAYN+K++ F + P
Sbjct: 1041 LLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSFEDPP 1100
Query: 180 TEA----LFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLD 235
A KGKGK K+Q +P E + + P LR L+VF+G GGLS G
Sbjct: 1101 NHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPK----LRTLDVFSGCGGLSEGFH 1156
Query: 236 KSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 295
++G++ + WAIE AA AF++NNPG TVF +DCN +L+ V+ E + + Q+LP+KG+
Sbjct: 1157 QAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGD 1216
Query: 296 VEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKN 355
VEMLCGGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+FK
Sbjct: 1217 VEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKR 1276
Query: 356 SMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSP 415
SMVLK+T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP VF+P
Sbjct: 1277 SMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAP 1336
Query: 416 RTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHF 475
R QL+V + K +VS S P+RTITVRD MSDLPE++NG E+ Y S F
Sbjct: 1337 RACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWF 1396
Query: 476 QREKVWKCYSKI 487
QR+ Y I
Sbjct: 1397 QRQLRGAQYQPI 1408
>sp|Q27746|DNMT1_PARLI DNA (cytosine-5)-methyltransferase PliMCI OS=Paracentrotus lividus
GN=DNMT PE=2 SV=1
Length = 1612
Score = 496 bits (1276), Expect = e-139, Method: Compositional matrix adjust.
Identities = 263/485 (54%), Positives = 332/485 (68%), Gaps = 15/485 (3%)
Query: 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVE----DEELYPEAYRKL 56
+ Y+ Y+G ++++ VY+ P+ F F K Q V K+PV DE+LYPE YRK
Sbjct: 915 VLYSSWHYKGNEFQIGDGVYLLPEVFSFNIK-QKVV--TKKPVSKKDVDEDLYPENYRKS 971
Query: 57 SDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQL 116
S+Y+KGSN P PF IG I++I+ K S S V L V K YRPE+TH+ YQ
Sbjct: 972 SEYVKGSNLECPEPFRIGKIISIYTTK-----SNSTVRLRVNKMYRPEDTHKGRTAAYQA 1026
Query: 117 DLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFT 176
DLN LYWS+EE L VQGKC VVC ++L +STD +S+ GPH+FYF EAY+S+ + F
Sbjct: 1027 DLNVLYWSEEEAVTELEVVQGKCSVVCAEDLNVSTDEYSAGGPHKFYFREAYDSERKCFE 1086
Query: 177 NLPTEALFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARP---LRCLEVFAGAGGLSRG 233
+ P+++ KGKGKGK + ++ E S P L+CL+VFAG GGLS G
Sbjct: 1087 DPPSKSRSTRMKGKGKGKGKGKAKGKIAVEKEEEKESTETPFNKLKCLDVFAGCGGLSEG 1146
Query: 234 LDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 293
++G+ S+WAIE + AA A+++NNPG TVF DDCN++L+ V+ E QKLP+K
Sbjct: 1147 FHQAGICESSWAIEKEEPAAQAYRLNNPGSTVFSDDCNELLRLVMQGEKTSRTGQKLPQK 1206
Query: 294 GEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAF 353
G+VE+LCGGPPCQGFSGMNRFN R+YS FKNSLI SYLSYCDYYRPRFFLLENVRNFV++
Sbjct: 1207 GDVELLCGGPPCQGFSGMNRFNSREYSKFKNSLISSYLSYCDYYRPRFFLLENVRNFVSY 1266
Query: 354 KNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVF 413
K +MVLK+ +RCL ++GYQCTFG LQAG +GV QTRRRAI+LAAAPGE LP YPEP VF
Sbjct: 1267 KKNMVLKLALRCLIRMGYQCTFGILQAGQYGVPQTRRRAIILAAAPGEKLPFYPEPLHVF 1326
Query: 414 SPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALS 473
S R L+V I +K S +W SAPYRTITVRD MSDLP I NG + E+ Y S
Sbjct: 1327 SSRACSLSVMIGEKKIESNNQWCLSAPYRTITVRDTMSDLPTINNGAQKLEISYDGEPQS 1386
Query: 474 HFQRE 478
FQ++
Sbjct: 1387 DFQKK 1391
>sp|B1Q3J6|DNM1B_ORYSJ DNA (cytosine-5)-methyltransferase 1B OS=Oryza sativa subsp. japonica
GN=MET1B PE=2 SV=1
Length = 1529
Score = 295 bits (756), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 175/494 (35%), Positives = 269/494 (54%), Gaps = 41/494 (8%)
Query: 17 SCVYVNPDC--FKFKSKPQSAVQNNKRPVEDEELY--PEAYRKLSD--YMKGSNAYTPAP 70
SC PDC + SK +N V D LY P+ + + D KG P
Sbjct: 886 SCQQKEPDCDELQILSKNSFIYRNITYNVNDY-LYIRPDFFSQEEDRATFKGGRNVGLKP 944
Query: 71 FGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQV 130
+ + +++ + + G + + + ++V++FYRP++ S Y D+ ++Y+S+ +V
Sbjct: 945 YVVCHLLDVHEPAGSRKIHPASTKISVRRFYRPDDI--SSAKAYVSDIREVYYSENIVKV 1002
Query: 131 SLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFL----- 185
+ ++GKC V + + IS H F+ Y+ T LP +
Sbjct: 1003 PVDMIEGKCEV--KKKIDISNSDVPVMVEHEFFCEHFYDPATGALKQLPPNVKLMSVQQK 1060
Query: 186 --GSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARST 243
G++ K KGK ++++ + D+ T+ R L L++FAG GGLS GL ++GV+ +
Sbjct: 1061 ATGALKKNKGKQICESDQVD-SDKCTKVSKENR-LATLDIFAGCGGLSEGLQQAGVSFTK 1118
Query: 244 WAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDN------------------EVCDD 285
WAIE++ A AF N+P VFVD+CN IL+ ++D + D
Sbjct: 1119 WAIEYEEPAGEAFTKNHPEAAVFVDNCNVILKAIMDKCGDADDCISTSEAAEQAAKFSQD 1178
Query: 286 KKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLE 345
LP GEVE + GGPPCQGFSGMNRFNQ +S + +I+++LS+ +Y+RPRFFLLE
Sbjct: 1179 NIMNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPRFFLLE 1238
Query: 346 NVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPK 405
NVRNFV+F ++T+ L ++GYQ FG L+AG FGV+Q+R+RA + AAAPGE LP
Sbjct: 1239 NVRNFVSFNKGQTFRLTVASLLEMGYQVRFGILEAGTFGVAQSRKRAFIWAAAPGETLPD 1298
Query: 406 YPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQ-SAPYRTITVRDVMSDLPEIQNGCKMEE 464
+PEP VF+ + +L + + Y + K T AP+R ITVRD + DLP+++NG
Sbjct: 1299 WPEPMHVFA--SPELKINLPDGKYYAAAKSTAGGAPFRAITVRDTIGDLPKVENGASKLL 1356
Query: 465 LPYKENALSHFQRE 478
L Y +S FQ++
Sbjct: 1357 LEYGGEPISWFQKK 1370
>sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1 OS=Arabidopsis thaliana GN=DMT1
PE=1 SV=1
Length = 1534
Score = 288 bits (737), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 180/496 (36%), Positives = 275/496 (55%), Gaps = 60/496 (12%)
Query: 10 GEQYKLKSCVYVNPDCFK-FKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTP 68
G +Y ++ VYVNPD K +++ ++ + G AY
Sbjct: 908 GIEYSVEDFVYVNPDSIGGLKEGSKTSFKSGRN-------------------IGLRAYV- 947
Query: 69 APFGIGYIVAIFKKKGKK-NVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEE 127
+ ++ I K+ +K ++ + DV V++FYRPE+ S E Y D+ +LY+S +
Sbjct: 948 ----VCQLLEIVPKESRKADLGSFDV--KVRRFYRPEDV--SAEKAYASDIQELYFSQDT 999
Query: 128 EQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGS 187
+ ++GKC V + ++ +S R H F+ + +++ LP S
Sbjct: 1000 VVLPPGALEGKCEVRKKSDMPLS--REYPISDHIFFCDLFFDTSKGSLKQLPANMKPKFS 1057
Query: 188 VSKG-----KGKGKNQTNKPE-EKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVAR 241
K K KGK ++ E E + E P R L L++FAG GGLS GL K+GV+
Sbjct: 1058 TIKDDTLLRKKKGKGVESEIESEIVKPVEPPKEIR-LATLDIFAGCGGLSHGLKKAGVSD 1116
Query: 242 STWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVID--------------NEVC---- 283
+ WAIE++ A AFK N+P TVFVD+CN IL+ +++ NE+
Sbjct: 1117 AKWAIEYEEPAGQAFKQNHPESTVFVDNCNVILRAIMEKGGDQDDCVSTTEANELAAKLT 1176
Query: 284 DDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFL 343
+++K LP G+V+ + GGPPCQGFSGMNRFNQ +S + +I+++LS+ DY+RPR+FL
Sbjct: 1177 EEQKSTLPLPGQVDFINGGPPCQGFSGMNRFNQSSWSKVQCEMILAFLSFADYFRPRYFL 1236
Query: 344 LENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVL 403
LENVR FV+F ++T+ L ++GYQ FG L+AG +GVSQ+R+RA + AAAP EVL
Sbjct: 1237 LENVRTFVSFNKGQTFQLTLASLLEMGYQVRFGILEAGAYGVSQSRKRAFIWAAAPEEVL 1296
Query: 404 PKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQ-SAPYRTITVRDVMSDLPEIQNGCKM 462
P++PEP VF +L +++S+ + + + T AP+R ITVRD + DLP ++NG
Sbjct: 1297 PEWPEPMHVFG--VPKLKISLSQGLHYAAVRSTALGAPFRPITVRDTIGDLPSVENGDSR 1354
Query: 463 EELPYKENALSHFQRE 478
YKE A+S FQ+E
Sbjct: 1355 TNKEYKEVAVSWFQKE 1370
>sp|Q7Y1I7|DNM1A_ORYSJ DNA (cytosine-5)-methyltransferase 1A OS=Oryza sativa subsp. japonica
GN=MET1A PE=2 SV=1
Length = 1527
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/439 (35%), Positives = 248/439 (56%), Gaps = 43/439 (9%)
Query: 70 PFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQ 129
P+ + +++++ G + + + V++FYRP++ S Y D+ ++Y+S++
Sbjct: 944 PYAVCHLLSVHGPAGSRKANPESTKVKVRRFYRPDDI--SSTKAYSSDIREVYYSEDIIS 1001
Query: 130 VSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGSVS 189
V + ++GKC V +D+L S + H F Y+ LP +
Sbjct: 1002 VPVVMIEGKCEVRLKDDLPNSD--LPAVVEHVFCCEYLYDPANGALKQLPPNVRLVTLTR 1059
Query: 190 KGKGKGKNQ-----------TNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSG 238
K KN+ ++KP KD +E L L++FAG GGLS GL +SG
Sbjct: 1060 KVPASKKNKGKQICDIELGGSDKP--KDGQSE-----NCLATLDIFAGCGGLSEGLQRSG 1112
Query: 239 VARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDN------------------ 280
++ + WAIE++ A AF N+P VFV++CN IL+ ++D
Sbjct: 1113 LSLTKWAIEYEEPAGDAFGENHPEAAVFVENCNVILKAIMDKCGDSDDCISTSEAAERAA 1172
Query: 281 EVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPR 340
++ +DK + LP GEVE + GGPPCQGFSGMNRFNQ +S + +I+++LS+ +Y+RPR
Sbjct: 1173 KLSEDKIKNLPVPGEVEFINGGPPCQGFSGMNRFNQSPWSKVQCEMILAFLSFAEYFRPR 1232
Query: 341 FFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPG 400
FFLLENVRNFV+F ++T+ L ++GYQ FG L+AG +GV+Q+R+RA + AAAPG
Sbjct: 1233 FFLLENVRNFVSFNKGQTFRLTLASLLEMGYQVRFGILEAGAYGVAQSRKRAFIWAAAPG 1292
Query: 401 EVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQS-APYRTITVRDVMSDLPEIQNG 459
E LP++PEP VF+ + +L +T+ + + K T + AP+R+ITVRD + DLP ++NG
Sbjct: 1293 ETLPEWPEPMHVFA--SPELKITLPDGKFYAAVKSTAAGAPFRSITVRDTIGDLPAVENG 1350
Query: 460 CKMEELPYKENALSHFQRE 478
+ Y +S FQ++
Sbjct: 1351 AGKPTIQYGSGPVSWFQKK 1369
>sp|Q9AXT8|CMT1_MAIZE DNA (cytosine-5)-methyltransferase 1 OS=Zea mays GN=MET2A PE=1 SV=1
Length = 912
Score = 117 bits (292), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 102/194 (52%), Gaps = 4/194 (2%)
Query: 286 KKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQ--YSAFKNSLIVSYLSYCDYYRPRFFL 343
K++ LP G+V+++CGGPPCQG SG NR+ R KN +V+++ Y +P++ L
Sbjct: 498 KRKILPLPGDVDVICGGPPCQGISGFNRYRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVL 557
Query: 344 LENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVL 403
+ENV + + F + + K + CL + YQ G + AG +G+ Q R R + A VL
Sbjct: 558 MENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVL 617
Query: 404 PKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKME 463
PKYP P R N + V+ + + + + + + D +SDLP++QN +
Sbjct: 618 PKYPLPTYDVVVRGGAPNAF--SQCMVAYDETQKPSLKKALLLGDAISDLPKVQNHQPND 675
Query: 464 ELPYKENALSHFQR 477
+ Y + + FQR
Sbjct: 676 VMEYGGSPKTEFQR 689
Score = 42.4 bits (98), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 107/257 (41%), Gaps = 38/257 (14%)
Query: 40 KRPVEDEELYPEAYRKLSD-----YMKGSNAYTPAPFG----IGYIVAIFKKKGKKNVSA 90
K+P E+EEL + + + Y G + Y A IG I F+ + +
Sbjct: 162 KKPDEEEELKARCHYRSAKVDNVVYCLGDDVYVKAGENEADYIGRITEFFEGTDQCH--- 218
Query: 91 SDVFLTVKKFYRPENTHRSVEFTYQLDLNK-----LYWSDEEEQVSLSDVQGKCFVVCED 145
+ T + F+R E+T + + +D +K ++ S+E+ L + K +V D
Sbjct: 219 ---YFTCRWFFRAEDTVINSLVSISVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVD 275
Query: 146 NLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGSVSKGKGKGKNQTNKPEEK 205
+ Y++ +Y+ F N+ +E G+ + T
Sbjct: 276 PNMDPKAKAQLIESCDLYYDMSYSVAYSTFANISSE----------NGQSGSDTASGISS 325
Query: 206 DEITEWPSIARPLRC---LEVFAGAGGLSRGL----DKSGVARST-WAIEFDSAAATAFK 257
D++ S + P R L++++G GG+S GL SG+ T WA++F+S A + K
Sbjct: 326 DDVDLETSSSMPTRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLK 385
Query: 258 MNNPGCTVFVDDCNKIL 274
N+P V + ++ L
Sbjct: 386 YNHPQTEVRNEKADEFL 402
>sp|Q8LPU5|CMT3_MAIZE DNA (cytosine-5)-methyltransferase 3 OS=Zea mays GN=DMT105 PE=2
SV=1
Length = 915
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 4/194 (2%)
Query: 286 KKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQ--YSAFKNSLIVSYLSYCDYYRPRFFL 343
K++ LP G+V+++CGGPPCQG SG NRF R KN +V+++ Y +P++ L
Sbjct: 502 KRKILPLPGDVDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVL 561
Query: 344 LENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVL 403
+ENV + + F + + K + CL + YQ G + AG +G+ Q R R + A VL
Sbjct: 562 MENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVL 621
Query: 404 PKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKME 463
PKYP P R N + V+ + + + + + + D SDLP+++N +
Sbjct: 622 PKYPLPTYDVVVRGGAPNAF--SQCMVAYDETQRPSLKKALLLGDAFSDLPKVENHQPND 679
Query: 464 ELPYKENALSHFQR 477
+ Y + + FQR
Sbjct: 680 VMEYGGSPKTEFQR 693
Score = 38.9 bits (89), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 41 RPVEDEELYPEAYRKLSD-----YMKGSNAYTPAPFG----IGYIVAIFKKKGKKNVSAS 91
+P ED+EL + + + Y G + Y A IG I F+ + +
Sbjct: 167 KPEEDDELKARCHYRSAKVDNIVYCLGDDVYVKAGENEADYIGRITEFFEGTDRCH---- 222
Query: 92 DVFLTVKKFYRPENTHRSVEFTYQLDLNK-----LYWSDEEEQVSLSDVQGKCFVVCEDN 146
+ T + F+R E+T + + +D +K ++ S+E+ L + K +V D
Sbjct: 223 --YFTCRWFFRAEDTVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDP 280
Query: 147 LQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGS-----VSKGKGKGKNQTNK 201
+ Y++ +Y+ F N+ +E GS +S + +N
Sbjct: 281 NMDPKAKAQLIEHCDLYYDMSYSVAYSTFANISSENGQSGSETASGISSDDAGLETSSNM 340
Query: 202 PEEKDEITEWPSIARPLRCLEVFAGAGGLSRGL----DKSGVARST-WAIEFDSAAATAF 256
PE R L++++G GG+S GL SG+ T WA++ +S A +
Sbjct: 341 PE------------RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSL 388
Query: 257 KMNNPGCTVFVDDCNKIL 274
K N+P V + ++ L
Sbjct: 389 KYNHPQTEVRNEKADEFL 406
>sp|Q9ARI6|CMT2_MAIZE DNA (cytosine-5)-methyltransferase 2 OS=Zea mays GN=ZMET5 PE=2 SV=1
Length = 915
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 101/194 (52%), Gaps = 4/194 (2%)
Query: 286 KKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQ--YSAFKNSLIVSYLSYCDYYRPRFFL 343
K++ LP G+V+++CGGPPCQG SG NRF R KN +V+++ Y +P++ L
Sbjct: 502 KRKILPLPGDVDVICGGPPCQGISGFNRFRNRDEPLKDEKNKQMVTFMDIVAYLKPKYVL 561
Query: 344 LENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVL 403
+ENV + + F + + K + CL + YQ G + AG +G+ Q R R + A VL
Sbjct: 562 MENVVDILKFADGYLGKYALSCLVAMKYQARLGMMVAGCYGLPQFRMRVFLWGALSSMVL 621
Query: 404 PKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKME 463
PKYP P R N + V+ + + + + + + D SDLP+++N +
Sbjct: 622 PKYPLPTYDVVVRGGAPNAF--SQCMVAYDETQRPSLKKALLLGDAFSDLPKVENHQPND 679
Query: 464 ELPYKENALSHFQR 477
+ Y + + FQR
Sbjct: 680 VMEYGGSPKTEFQR 693
Score = 38.9 bits (89), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 104/258 (40%), Gaps = 42/258 (16%)
Query: 41 RPVEDEELYPEAYRKLSD-----YMKGSNAYTPAPFG----IGYIVAIFKKKGKKNVSAS 91
+P ED+EL + + + Y G + Y A IG I F+ + +
Sbjct: 167 KPEEDDELKARCHYRSAKVDNIVYCLGDDVYVKAGENEADYIGRITEFFEGTDRCH---- 222
Query: 92 DVFLTVKKFYRPENTHRSVEFTYQLDLNK-----LYWSDEEEQVSLSDVQGKCFVVCEDN 146
+ T + F+R E+T + + +D +K ++ S+E+ L + K +V D
Sbjct: 223 --YFTCRWFFRAEDTVINSLVSINVDGHKHDPRRVFLSEEKNDNVLDCIISKVKIVHVDP 280
Query: 147 LQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLGS-----VSKGKGKGKNQTNK 201
+ Y++ +Y+ F N+ +E GS +S + +N
Sbjct: 281 NMDPKAKAQLIEHCDLYYDMSYSVAYSTFANISSENGQSGSETASGISSDDAGLETSSNM 340
Query: 202 PEEKDEITEWPSIARPLRCLEVFAGAGGLSRGL----DKSGVARST-WAIEFDSAAATAF 256
PE R L++++G GG+S GL SG+ T WA++ +S A +
Sbjct: 341 PE------------RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDLNSFACQSL 388
Query: 257 KMNNPGCTVFVDDCNKIL 274
K N+P V + ++ L
Sbjct: 389 KYNHPQTEVRNEKADEFL 406
>sp|Q94F88|CMT3_ARATH DNA (cytosine-5)-methyltransferase CMT3 OS=Arabidopsis thaliana
GN=CMT3 PE=1 SV=2
Length = 839
Score = 112 bits (280), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 102/193 (52%), Gaps = 10/193 (5%)
Query: 290 LPRKGEVEMLCGGPPCQGFSGMNRFNQ--RQYSAFKNSLIVSYLSYCDYYRPRFFLLENV 347
LP G V+++CGGPPCQG SG NRF KN ++ Y++ +Y +P+F L+ENV
Sbjct: 445 LPLPGGVDVVCGGPPCQGISGHNRFRNLLDPLEDQKNKQLLVYMNIVEYLKPKFVLMENV 504
Query: 348 RNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYP 407
+ + + + + L Q+ YQ G + AG +G++Q R R + A P E++P++P
Sbjct: 505 VDMLKMAKGYLARFAVGRLLQMNYQVRNGMMAAGAYGLAQFRLRFFLWGALPSEIIPQFP 564
Query: 408 EPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRT---ITVRDVMSDLPEIQNGCKMEE 464
P R + I K+ + + + + + ++DV+SDLP + N K +E
Sbjct: 565 LPTHDLVHRGN-----IVKEFQGNIVAYDEGHTVKLADKLLLKDVISDLPAVANSEKRDE 619
Query: 465 LPYKENALSHFQR 477
+ Y ++ + FQ+
Sbjct: 620 ITYDKDPTTPFQK 632
>sp|P94147|MTA1_RUEGE Modification methylase AgeI OS=Ruegeria gelatinovora GN=ageIM PE=3
SV=1
Length = 429
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 116/238 (48%), Gaps = 18/238 (7%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
++ +++F GAGGL G ++G + + +A + ++ A +K N+P D + +
Sbjct: 1 MKTIDLFCGAGGLGEGFRQAGFS-ALYANDHETPALATYKENHPDAVCSTDSIETVDPKK 59
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
I ++ G+V+++ GGPPCQGFS + QR+ +N L V Y + + +
Sbjct: 60 IREDLG-------VAPGQVDVVMGGPPCQGFS---TYGQRRDDDARNQLYVPYFGFVEEF 109
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
RP+ FL+ENV ++ VL + +GY TL A +GV Q RRR + A
Sbjct: 110 RPKAFLIENVVGLLSMSGGAVLADMVARAEALGYAADVVTLDACEYGVPQHRRRVFIFGA 169
Query: 398 APGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPE 455
A G+ + P+P V R+ V + + Q A +TVRD +SDLP+
Sbjct: 170 ADGQRI-DPPQPSHVNGKRSGV--VLNDQPSLFFDGPSIQPA----LTVRDAISDLPD 220
>sp|Q94F87|CMT2_ARATH DNA (cytosine-5)-methyltransferase CMT2 OS=Arabidopsis thaliana
GN=CMT2 PE=2 SV=3
Length = 1295
Score = 102 bits (254), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 96/194 (49%), Gaps = 4/194 (2%)
Query: 286 KKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQ--YSAFKNSLIVSYLSYCDYYRPRFFL 343
K + LP G V ++CGGPPCQG SG NR + +N I+ ++ +Y +P + L
Sbjct: 896 KSKILPLPGRVGVICGGPPCQGISGYNRHRNVDSPLNDERNQQIIVFMDIVEYLKPSYVL 955
Query: 344 LENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVL 403
+ENV + + + + + L + YQ G + AG +G+SQ R R + A P + L
Sbjct: 956 MENVVDILRMDKGSLGRYALSRLVNMRYQARLGIMTAGCYGLSQFRSRVFMWGAVPNKNL 1015
Query: 404 PKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKME 463
P +P P R L + ++ V+ + + + ++D +SDLP + N E
Sbjct: 1016 PPFPLPTHDVIVRYG-LPLEF-ERNVVAYAEGQPRKLEKALVLKDAISDLPHVSNDEDRE 1073
Query: 464 ELPYKENALSHFQR 477
+LPY+ + FQR
Sbjct: 1074 KLPYESLPKTDFQR 1087
Score = 42.7 bits (99), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 28/224 (12%)
Query: 59 YMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDL 118
Y+KG T +G IV FK + + + V+ FYR +T + T D
Sbjct: 587 YIKGEEEET----HVGQIVEFFK------TTDGESYFRVQWFYRATDTIMERQATNH-DK 635
Query: 119 NKLYWSDEEEQVSLSDVQGKCFVVCEDNLQIS--TDRWSSRGPHRFYFNEAYNSKTEEFT 176
+L++S ++D C + LQ+S + +YF+ Y + F
Sbjct: 636 RRLFYS-----TVMNDNPVDCLISKVTVLQVSPRVGLKPNSIKSDYYFDMEYCVEYSTFQ 690
Query: 177 NLPTEALFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDK 236
L S+ K + E + I + S + L L++++G GG+S GL
Sbjct: 691 TLRNP-----KTSENKLECCADVVPTESTESILKKKSFSGELPVLDLYSGCGGMSTGLSL 745
Query: 237 ----SGVARST-WAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 275
SGV T WA++ ++AA + K+N+P V D LQ
Sbjct: 746 GAKISGVDVVTKWAVDQNTAACKSLKLNHPNTQVRNDAAGDFLQ 789
>sp|O49139|CMT1_ARATH Putative DNA (cytosine-5)-methyltransferase CMT1 OS=Arabidopsis
thaliana GN=CMT1 PE=5 SV=2
Length = 791
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 88/189 (46%), Gaps = 6/189 (3%)
Query: 286 KKQKLPRKGEVEMLCGGPPCQGFSGMNRF--NQRQYSAFKNSLIVSYLSYCDYYRPRFFL 343
K LP G V +CGGPPCQG SG NR+ N+ KN ++ +L D+ +P + L
Sbjct: 398 KSHLLPLPGTVYTVCGGPPCQGISGYNRYRNNEAPLEDQKNQQLLVFLDIIDFLKPNYVL 457
Query: 344 LENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVL 403
+ENV + + F + + + + YQ G + AG +G+ Q R R + AA P E L
Sbjct: 458 MENVVDLLRFSKGFLARHAVASFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKL 517
Query: 404 PKYPEPWTVFSPRTSQLNVTIS-KKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKM 462
P YP P + + N K V + +T+ D +SDLP + N
Sbjct: 518 PPYPLPTHEVA---KKFNTPKEFKDLQVGRIQMEFLKLDNALTLADAISDLPPVTNYVAN 574
Query: 463 EELPYKENA 471
+ + Y + A
Sbjct: 575 DVMDYNDAA 583
>sp|P52311|MTX2_XANOR Modification methylase XorII OS=Xanthomonas oryzae pv. oryzae
(strain KACC10331 / KXO85) GN=xorIIM PE=3 SV=2
Length = 424
Score = 100 bits (249), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 99/200 (49%), Gaps = 18/200 (9%)
Query: 214 IARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKI 273
+ RP+ +++FAGAGGLS G +++G A++ D A K N P C C +
Sbjct: 1 MTRPI-GIDLFAGAGGLSLGFEQAGFD-LVAAVDIDPIHCAAHKFNFPKCATV---CKSV 55
Query: 274 LQRVIDNEVCDDKKQKLPRKG--EVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYL 331
+ +V D+ +++ G +++++ GG PCQGFS +R +N L+ Y+
Sbjct: 56 V------DVTGDELRRIAGIGKRDIDIVIGGAPCQGFS---LIGKRALDDSRNQLVHHYV 106
Query: 332 SYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCT--FGTLQAGHFGVSQTR 389
+P++F+ ENV+ K+ LK + GY + L A +GV Q R
Sbjct: 107 RVVMELKPKYFVFENVKGLTVGKHRQFLKEVIEAFQNGGYDVVTDYRVLNAADYGVPQDR 166
Query: 390 RRAIVLAAAPGEVLPKYPEP 409
RR I++ A G LP YPEP
Sbjct: 167 RRLILMGARKGLPLPAYPEP 186
>sp|P05302|MTD1_DESNO Modification methylase DdeI OS=Desulfomicrobium norvegicum (strain
DSM 1741 / NCIMB 8310) GN=ddeIM PE=3 SV=1
Length = 415
Score = 88.6 bits (218), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 87/182 (47%), Gaps = 18/182 (9%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
+ +++FAG GG S G +G S AIE D A+ + NNP +V +D +
Sbjct: 1 MNIIDLFAGCGGFSHGFKMAGY-NSILAIEKDLWASQTYSFNNPNVSVITEDITTLDPGD 59
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ V D V+ + GGPPCQGFS +Q+ +NSL V ++ + ++
Sbjct: 60 LKISVSD-----------VDGIIGGPPCQGFSLSGNRDQKDP---RNSLFVDFVRFVKFF 105
Query: 338 RPRFFLLENVRNFVAFKN---SMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIV 394
P+FF++ENV ++ K V + + +GY+ L A +GV Q+R+R
Sbjct: 106 SPKFFVMENVLGILSMKTKSRQYVKDIIAEEFSNVGYKVCVIILNACDYGVPQSRQRVFF 165
Query: 395 LA 396
+
Sbjct: 166 IG 167
>sp|P50192|MTHA_HAEPH Modification methylase HphIA OS=Haemophilus parahaemolyticus
GN=hphIAM PE=3 SV=1
Length = 372
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 83/192 (43%), Gaps = 11/192 (5%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
L +++F+GAGG S G D++G ++E + ++ N P V D +
Sbjct: 45 LTYIDLFSGAGGFSLGFDRAGF-HQLLSVEIEPHYCDTYRANFPDHQVLQQDLTTL---- 99
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
DD + +V+++ GGPPCQGFS + + +N L ++
Sbjct: 100 -----SDDNLLRHINHRKVDVVIGGPPCQGFSMAGKIGRTFADDPRNHLFKEFVRVVKLT 154
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+FF++ENV + ++GY+ L A FGV Q R R + +
Sbjct: 155 QPKFFVMENVARLFTHNSGKTRAEITEQFERLGYKVKCKVLNAADFGVPQLRSRIVFIGR 214
Query: 398 APGEVLPKYPEP 409
G + +PEP
Sbjct: 215 KDGGEI-TFPEP 225
>sp|P08455|MTP2_NEIGO Modification methylase NgoPII OS=Neisseria gonorrhoeae GN=ngoPIIM
PE=3 SV=2
Length = 330
Score = 79.0 bits (193), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 17/179 (9%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
++ + +F+G GGL G +K+G A E+D FK N+P + D KI
Sbjct: 1 MKIISLFSGCGGLDLGFEKAGFEIPA-ANEYDKTIWATFKANHPKTHLIEGDIRKI---- 55
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
K++ P E++ + GGPPCQ +S R + L Y+
Sbjct: 56 --------KEEDFPE--EIDGIIGGPPCQSWSEAGAL--RGIDDARGQLFFDYIRILKSK 103
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
+P+FFL ENV +A +++ ++ ++ GY T A +GV+Q R+R +
Sbjct: 104 QPKFFLAENVSGMLANRHNGAVQNLLKMFDGCGYDVTLTMANAKDYGVAQERKRVFYIG 162
>sp|P34882|MTAA_SYNP2 Modification methylase AquI subunit alpha OS=Synechococcus sp.
(strain ATCC 27264 / PCC 7002 / PR-6) GN=aquIMA PE=3
SV=1
Length = 248
Score = 77.8 bits (190), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 107/244 (43%), Gaps = 32/244 (13%)
Query: 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVI 278
+ + +F+GAGG+ G +G + + A+E D + ++N P V D I +VI
Sbjct: 4 KLISLFSGAGGMDIGFHAAGFSTAV-AVEQDPSCCNTLRLNMPDTPVIEGDITSITTQVI 62
Query: 279 DNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYR 338
K L E++++ GGPPCQ FS + + + L++ +L
Sbjct: 63 LEAA---KVNPL----EIDLVIGGPPCQSFSLAGK--RMGMDDPRGMLVLEFLRVVREAL 113
Query: 339 PRFFLLENVRNFVAFKNSMVLKMTMRCLTQ--------IGYQCTFGTLQAGHFGVSQTRR 390
P+ F++ENV+ + + L+ M +Q Y ++ L A FGV Q R
Sbjct: 114 PKCFVMENVKGMINWSKGKALEAIMTEASQPIKYAGKEYKYAVSYHVLNAADFGVPQFRE 173
Query: 391 RAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVM 450
R ++ G+ ++PEP S + Q+++ Q PY+ TV+D +
Sbjct: 174 RVFIVGNRLGKTF-QFPEPTHGPSNQARQIDLF-----------GKQLKPYK--TVQDAI 219
Query: 451 SDLP 454
S LP
Sbjct: 220 STLP 223
>sp|P09795|MTS1_SALIN Modification methylase SinI OS=Salmonella infantis GN=sinIM PE=3
SV=1
Length = 461
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/279 (22%), Positives = 114/279 (40%), Gaps = 57/279 (20%)
Query: 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVI 278
+ L F+GA GL G++++G + A E D AA N P + D + + ++
Sbjct: 76 KALSFFSGAMGLDLGIEQAGF-ETLLASEIDKAARDTILSNRPNMALIGDIRDYTTEDIL 134
Query: 279 DNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYR 338
K + E++++ GGPPCQ FS + + + ++ + YL R
Sbjct: 135 -------KLAGVSSGNEIDLIMGGPPCQAFSTAGK--RLGLEDERGNVFIKYLDVALDIR 185
Query: 339 PRFFLLENVRNFVAF---------------------KNSMVLKMTMRCLTQIGYQCTFGT 377
P++ ++ENVR ++ + VL +R + GY +F
Sbjct: 186 PKYIVIENVRGLLSAPMKHRPHNERGEGLPPLKSEEQPGGVLHYIIRIIKSAGYSVSFNL 245
Query: 378 LQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQ 437
+ +FGV Q R R I++ + G +P L T S+K KW
Sbjct: 246 YNSANFGVPQIRERVIIICSRDGSRVPF--------------LQPTHSEKGEYGLPKW-- 289
Query: 438 SAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQ 476
IT+R+ +++L I + E + + E L +++
Sbjct: 290 ------ITLRETITNLKNITH----EHVLFPEKRLKYYR 318
>sp|P50196|MTE8_ECOLX Modification methylase Eco47II OS=Escherichia coli GN=eco47IIM PE=3
SV=1
Length = 417
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 79/179 (44%), Gaps = 18/179 (10%)
Query: 220 CLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVID 279
LE+FAGAGG++ GL+K+G+ +S E DS A + N P V D +++
Sbjct: 83 VLELFAGAGGMALGLEKAGL-KSVLLNEIDSHACKTLRKNRPEWNVVEGDVSQV------ 135
Query: 280 NEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRP 339
P + V++L GG PCQ FS + + + + +L + P
Sbjct: 136 --------DFTPYRNTVDVLAGGFPCQAFSYAGK--KLGFEDTRGTLFFEFARAAKEINP 185
Query: 340 RFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQC-TFGTLQAGHFGVSQTRRRAIVLAA 397
+ L ENVR + L+ +T +GY L+A + V Q R R I++A
Sbjct: 186 KVLLAENVRGLLNHDAGRTLETIKNIITDLGYTLFEPRVLKAIFYKVPQKRERLIIVAV 244
>sp|O52702|MTA1_ACEPA Modification methylase ApaLI OS=Acetobacter pasteurianus GN=apaLIM
PE=3 SV=1
Length = 429
Score = 72.4 bits (176), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 220 CLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVID 279
+ +FAGAGG S G ++G+ + + E ++ A ++ N C+++ +D
Sbjct: 7 VVSLFAGAGGFSSGFSQAGL-KPLFGAEINADACQTYQEN------VGSPCHQLDLSTVD 59
Query: 280 N---EVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDY 336
E+ K+ ++ GGPPCQGFS R ++ +N LI +YL+ +
Sbjct: 60 PSHIEMLTGGKRPF-------VVIGGPPCQGFSTAG---PRNFADPRNLLIFNYLNIVER 109
Query: 337 YRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
PR+ + ENV + L +R +GY + +GV QTR+R +++
Sbjct: 110 LSPRWLIFENVEGLLTSGGGRDLARLVREFVDMGYSVRLQKVNLAAYGVPQTRKRVLIIG 169
>sp|P50188|MTN1_NOCAE Modification methylase NaeI OS=Lechevalieria aerocolonigenes
GN=naeIM PE=3 SV=1
Length = 413
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/225 (28%), Positives = 90/225 (40%), Gaps = 21/225 (9%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
L +E+ AGAGG + GL+K+G + A+E D AA + N V D V
Sbjct: 4 LEVVEICAGAGGQALGLEKAGFSHRL-AVELDVNAAATLRKNLKSDVVITGD-------V 55
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFK-NSLIVSYLSYCDY 336
D V + + V +L GG PC FS +Q A L + CD
Sbjct: 56 ADPSVLNPMEHL-----GVSLLAGGVPCPPFS----IAGKQLGADDMRDLFAWAVELCDV 106
Query: 337 YRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
+PR +LENVR + + + + L +GY + L A FGV Q R R VL
Sbjct: 107 MKPRALMLENVRGLSMPRFAGYRQHVLDRLNDMGYVAEWRLLHASDFGVPQLRPR-FVLV 165
Query: 397 AAPGEVLP--KYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSA 439
A + P +PEP L ++ + +W A
Sbjct: 166 ALQNKFAPYFTWPEPTGAAPTVGETLKDLMAADGWEGAEEWAAQA 210
>sp|P34906|MTF1_FUSNU Modification methylase FnuDI OS=Fusobacterium nucleatum GN=fnuDIM
PE=3 SV=1
Length = 344
Score = 70.5 bits (171), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 83/179 (46%), Gaps = 19/179 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
++ L +F+GAGGL G +++G A E+D ++ N+ ++
Sbjct: 1 MKLLSLFSGAGGLDLGFERAGF-EIIVANEYDKTIWETYEKNHKA-------------KL 46
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
I ++ + ++LP+ + + GGPPCQ +S R + + L Y+
Sbjct: 47 IKKDIREILSEELPKS---DGIIGGPPCQSWSEAGSL--RGINDPRGKLFYEYIRILKDI 101
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
+P+FFL ENV+ ++ +N+ +K ++ + GY L A +GV+Q R R +
Sbjct: 102 QPKFFLAENVKGMLSKRNTEAVKDIIKEFEEAGYNVFIKLLNAFDYGVAQDRERVFYVG 160
>sp|P23737|MTS9_STAAU Modification methylase Sau96I OS=Staphylococcus aureus GN=sau96IM
PE=3 SV=1
Length = 430
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 72/152 (47%), Gaps = 13/152 (8%)
Query: 245 AIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPP 304
A+E D AA ++N P V +D I + +E D+ E+++L GG P
Sbjct: 125 AVEIDKNAAETLRINRPKWKVIENDIEFIADNL--DEFIDE---------EIDILSGGYP 173
Query: 305 CQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMR 364
CQ FS + N ++ + +L Y +P+ F+ ENVR V + L++ ++
Sbjct: 174 CQTFSYAGKRNG--FADTRGTLFYPYSKILSKLKPKAFIAENVRGLVNHDDGKTLEVMLK 231
Query: 365 CLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
+ GY+ + L + ++ V+Q R R +++
Sbjct: 232 VFIKEGYEVYWNILNSWNYDVAQKRERIVIIG 263
>sp|P34877|MTSA_LACLC Modification methylase ScrFIA OS=Lactococcus lactis subsp. cremoris
GN=scrFIAM PE=3 SV=1
Length = 389
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 19/178 (10%)
Query: 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVI 278
+ +++FAG GG G ++ +S ++ E D A +K N F D+ + + ++
Sbjct: 80 KMIDLFAGIGGTRLGFHQTEKVKSVFSSEIDKFAIKTYKAN------FGDEPHGDITKID 133
Query: 279 DNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYR 338
+ ++ D ++L GG PCQ FS + + + + +L R
Sbjct: 134 EKDIPDH-----------DILVGGFPCQAFSQAGK--KLGFDDTRGTLFFEIARIIKEKR 180
Query: 339 PRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
P+ FLLENV+N K + L ++ Y+ +A FG+ Q R R ++
Sbjct: 181 PKAFLLENVKNLKTHDKGRTFKTILNTLEELDYEVHTALFKARDFGLPQNRERIYIVG 238
>sp|P43420|MTB6_BACSF Modification methylase Bsp6I OS=Bacillus sp. (strain RFL6)
GN=bsp6IM PE=3 SV=1
Length = 315
Score = 69.7 bits (169), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 98/238 (41%), Gaps = 26/238 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
L+ +FAG GG+ G +++G + WA E+D AA ++ N ++
Sbjct: 2 LQIASLFAGVGGIDLGFEQTGYFETVWANEYDKNAAITYQSN-------------FKNKL 48
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS--GMNRFNQRQYSAFKNSLIVSYLSYCD 335
I +++ + K + +P + ++L G PC FS G + + + S L L
Sbjct: 49 IIDDIRNIKVEDVP---DFDVLLSGFPCTSFSVAGYRKGFEDEKSG---DLFFETLRLIV 102
Query: 336 YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFG-VSQTRRRAIV 394
+P+ LENV+N V N K+ L GY + L A FG + Q R R +
Sbjct: 103 AKKPQVIFLENVKNLVGHDNGNTFKVIYEALESNGYHIKYQVLNAKDFGNIPQNRERIYI 162
Query: 395 LAAAPGEVLPKY----PEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRD 448
+ E + P+P T+ L+ + + Y + K + +P + D
Sbjct: 163 VGFRNIEHYKNFNFPMPQPLTLTIKDMINLSDKLDDRFYYTEDKCSFYSPLQEQMTSD 220
>sp|P00476|MTBS_BPSPR Modification methylase SPRI OS=Bacillus phage SPR PE=3 SV=1
Length = 439
Score = 68.9 bits (167), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/244 (25%), Positives = 104/244 (42%), Gaps = 33/244 (13%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAI-EFDSAAATAF-KMNNPGCTVFVDDCNKILQ 275
LR + +F+G G L GV E D A +F ++N + D +KI
Sbjct: 4 LRVMSLFSGIGAFEAALRNIGVGYELVGFSEIDKYAVKSFCAIHNVDEQLNFGDVSKI-- 61
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 335
K+KLP E ++L GG PCQ FS +++ + + +L Y+
Sbjct: 62 ----------DKKKLP---EFDLLVGGSPCQSFSVAG--HRKGFEDTRGTLFFQYVETLK 106
Query: 336 YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 395
+P+FF+ ENV+ + L + +++GY+ L + F V Q R R ++
Sbjct: 107 EKQPKFFVFENVKGLINHDKGNTLNVMAEAFSEVGYRIDLELLNSKFFNVPQNRERLYII 166
Query: 396 AAAPGEVLPKYPEPWTVFSPRTSQLN------VTISKKTYVSTCKWT-QSAPYRTITVRD 448
E L K E W++ R L V + K++ +WT QSA T ++D
Sbjct: 167 GIR--EDLIK-NEEWSLDFKRKDILQKGKQRLVELDIKSF--NFRWTAQSAA--TKRLKD 219
Query: 449 VMSD 452
++ +
Sbjct: 220 LLEE 223
>sp|P09915|MTBR_BPRH1 Modification methylase Rho11sI OS=Bacillus phage rho11s PE=3 SV=2
Length = 503
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 76/182 (41%), Gaps = 19/182 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAI-EFDSAAATAF-KMNNPGCTVFVDDCNKILQ 275
LR + +F+G G L GV E D A ++ ++N + D +KI
Sbjct: 4 LRVMSLFSGIGAFEAALRNIGVEYELVGFSEIDKYAIKSYCAIHNADEQLNFGDVSKI-- 61
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 335
K+KLP E ++L GG PCQ FS ++ + + +L Y+
Sbjct: 62 ----------DKKKLP---EFDLLVGGSPCQSFSVAGY--RKGFEDTRGTLFFQYIDTLK 106
Query: 336 YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 395
+PR+F+ ENV+ + L + +++GY+ L + F V Q R R ++
Sbjct: 107 EKQPRYFVFENVKGLINHDKGNTLNIMAESFSEVGYRIDLELLNSKFFNVPQNRERIYII 166
Query: 396 AA 397
Sbjct: 167 GV 168
>sp|P24581|MTNX_NEILA Cytosine-specific methyltransferase NlaX OS=Neisseria lactamica
GN=nlaXM PE=3 SV=1
Length = 313
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 96/219 (43%), Gaps = 19/219 (8%)
Query: 218 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQR 276
+ +++FAG GG+ G +++ R ++ E D A ++ N+ G TV C I Q
Sbjct: 2 FKIIDLFAGIGGIRLGFEQAFDDVRCVFSSEIDKYAVQTYQANHGGETV----CGDITQ- 56
Query: 277 VIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDY 336
+V D +P + ++L G PCQ FS ++ ++ + +L
Sbjct: 57 ---TDVAD-----IP---DHDILSAGFPCQPFSQAGL--KKGFADTRGTLFFDIERILLA 103
Query: 337 YRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
+P+ FLLENV+ L++ + L Q GY+ L+A FG+ Q R R ++
Sbjct: 104 KKPQAFLLENVKQLKGHDKGRTLQVILAHLQQAGYKVYTEVLKARDFGIPQNRERIYLVG 163
Query: 397 AAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKW 435
+V ++P+P + L +K +S W
Sbjct: 164 FLNHDVDFRFPQPIGQATAVGDILEAYPDEKYTISDKLW 202
>sp|Q8EL95|MT36_OCEIH Putative modification methylase OB3336 OS=Oceanobacillus iheyensis
(strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831)
GN=OB3336 PE=3 SV=1
Length = 460
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 110/262 (41%), Gaps = 40/262 (15%)
Query: 220 CLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVI 278
+++F+G GGL+ G +G R ++ D++ +F ++ N + +
Sbjct: 17 VVDLFSGCGGLALGFQLAGFNIRKGIELDRDASDVASFNLHWRQGK-HDRHLNNDITLLS 75
Query: 279 DNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRF-------NQRQYSAFKNSLIVSYL 331
NE +D L RK ++ ++ GGPPCQ +S + R +RQ + + L ++L
Sbjct: 76 ANEFYND----LDRKNDL-IVIGGPPCQAYSKIGRAKLKSLGEERRQENDARGKLYENFL 130
Query: 332 SYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRR 391
Y + ++ENV V + + L GY + L A FGV QTR R
Sbjct: 131 DYALHVDANVIVMENVPEAVNYGGVNIPDTVCDILINKGYDAIWTVLNAADFGVPQTRVR 190
Query: 392 AIVLAAAPGEVLPKY-PEPWTVFSPRTSQLNVTISKKTYVSTCKWTQS------------ 438
V+A K+ PEP T + ++ + +++ +W QS
Sbjct: 191 LFVMAIKKDIGKIKFIPEP-------THKPHINVKRQSV--NVRWMQSEIRNSKYYKQPN 241
Query: 439 APYRT----ITVRDVMSDLPEI 456
P T +TV D + DLP +
Sbjct: 242 IPDETLSDWVTVGDAIGDLPNL 263
>sp|P17044|MTBF_BACIU Modification methylase BsuFI OS=Bacillus subtilis GN=hsdFM PE=3
SV=1
Length = 409
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 86/182 (47%), Gaps = 20/182 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
L +++FAG GG+ G + + ++ E+D AA ++ N + + + + ++
Sbjct: 101 LTFIDLFAGIGGIRLGFEDK-YTKCVFSSEWDKYAAQTYEAN------YGEKPHGDITKI 153
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+N++ D ++L G PCQ FS + + + ++ + ++I L
Sbjct: 154 NENDIPDQ-----------DVLLAGFPCQPFSNIGK--REGFAHERRNIIFDVLRILKKK 200
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ FLLENV+ + N ++ + L +GY + + A +FG+ Q R R +++
Sbjct: 201 QPKMFLLENVKGLLTNDNGNTFRVILDNLKSLGYSVFYEVMDAQNFGLPQRRERIVIVGF 260
Query: 398 AP 399
P
Sbjct: 261 HP 262
>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens
GN=TRDMT1 PE=1 SV=1
Length = 391
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 89/212 (41%), Gaps = 38/212 (17%)
Query: 217 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 275
PLR LE+++G GG+ L +S + A+ AI+ ++ A +K N P + I
Sbjct: 3 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 62
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 335
D D M+ PPCQ F+ + R +S S+L D
Sbjct: 63 EEFDRLSFD-------------MILMSPPCQPFTRIGR-----QGDMTDSRTNSFLHILD 104
Query: 336 YY-----RPRFFLLENVRNF-VAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTR 389
P++ LLENV+ F V+ ++++ C G+Q L G+ +R
Sbjct: 105 ILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENC----GFQYQEFLLSPTSLGIPNSR 160
Query: 390 RRAIVLA---------AAPGEVLPKYPEPWTV 412
R ++A APG+VL ++P+ +V
Sbjct: 161 LRYFLIAKLQSEPLPFQAPGQVLMEFPKIESV 192
>sp|P0AED9|DCM_ECOLI DNA-cytosine methyltransferase OS=Escherichia coli (strain K12)
GN=dcm PE=1 SV=1
Length = 472
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN---NPGCTVFVDDCNKIL 274
R +++FAG GG+ RG + G + + E++ A +K N +P F +D I
Sbjct: 87 FRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDIT 145
Query: 275 ----QRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS--GMNRFNQR-QYSAF----K 323
+ V D + +Q +P E ++L G PCQ FS G+++ N + F +
Sbjct: 146 LSHKEGVSDEAAAEHIRQHIP---EHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQ 202
Query: 324 NSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCT 374
+L + D RP F+LENV+N + ++ M+ L ++GY
Sbjct: 203 GTLFFDVVRIIDARRPAMFVLENVKNLKSHDQGKTFRIIMQTLDELGYDVA 253
>sp|P0AEE0|DCM_ECO57 DNA-cytosine methyltransferase OS=Escherichia coli O157:H7 GN=dcm
PE=3 SV=1
Length = 472
Score = 65.1 bits (157), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 79/171 (46%), Gaps = 18/171 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN---NPGCTVFVDDCNKIL 274
R +++FAG GG+ RG + G + + E++ A +K N +P F +D I
Sbjct: 87 FRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDIT 145
Query: 275 ----QRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS--GMNRFNQR-QYSAF----K 323
+ V D + +Q +P E ++L G PCQ FS G+++ N + F +
Sbjct: 146 LSHKEGVSDEAAAEHIRQHIP---EHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFACDTQ 202
Query: 324 NSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCT 374
+L + D RP F+LENV+N + ++ M+ L ++GY
Sbjct: 203 GTLFFDVVRIIDARRPAMFVLENVKNLKSHDQGKTFRIIMQTLDELGYDVA 253
>sp|P20589|MTH3_HAEAE Modification methylase HaeIII OS=Haemophilus aegyptius GN=haeIIIM
PE=1 SV=1
Length = 330
Score = 64.3 bits (155), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 19/179 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
+ + +F+GAGGL G K+G R A E+D + ++ N+ ++
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-------------KL 46
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
I ++ + P+ + + GGPPCQ +S R + L Y+
Sbjct: 47 IKGDISKISSDEFPK---CDGIIGGPPCQSWSEGGSL--RGIDDPRGKLFYEYIRILKQK 101
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
+P FFL ENV+ +A +++ ++ ++ GY L A +GV+Q R+R +
Sbjct: 102 KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIG 160
>sp|P45000|MTH5_HAEIN Modification methylase HindV OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=hindVM PE=3 SV=1
Length = 304
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 79/174 (45%), Gaps = 19/174 (10%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
++C+++F+G GGLS G + +G A E A +K N +D N
Sbjct: 1 MKCVDLFSGCGGLSLGFELAGFEICA-AFENWEKAIEIYKNNFSHPIYNIDLRN------ 53
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ E + K+ P +++ GGPPCQ FS + R S + L S+ +
Sbjct: 54 -EKEAVEKIKKYSP-----DLIMGGPPCQDFSSAGK---RDISLGRADLTYSFANIVCNI 104
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRR 391
RP++F++ENV K S +L+ + GY T L A + GV Q+R R
Sbjct: 105 RPKWFVMENVEQ---IKKSHILQDIINQFIDFGYGLTSAILDASYCGVPQSRTR 155
>sp|Q59606|MTF7_NEIGO Modification methylase NgoFVII OS=Neisseria gonorrhoeae GN=ngoFVIIM
PE=3 SV=1
Length = 374
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 18/204 (8%)
Query: 207 EITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVF 266
+I+ S + + L +F+G GGL G ++G + WA +F A +F+ N V
Sbjct: 5 QISNLNSSSNKPKILSLFSGCGGLDLGFHQAG-CETVWANDFSHWACESFRKNIGDVIVE 63
Query: 267 VDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSL 326
D ++++ N+ P + +++ GG PCQ FS + + Q + +L
Sbjct: 64 GD-----IEQINPND---------PTIPDCDIILGGFPCQDFSMI--WKQPGLEGERGNL 107
Query: 327 IVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVS 386
S+L + + +P+ F+ ENV+ + ++ + GY FGV
Sbjct: 108 YKSFLRFVNAKKPKVFVAENVKGLLTANKKKAIQQIITDFENCGYYVQANVYNFAEFGVP 167
Query: 387 QTRRRAIVLAAAPGEVLP-KYPEP 409
Q R R +++ ++PEP
Sbjct: 168 QFRERVLIVGVRLDTGFDFRHPEP 191
>sp|O34939|YDIO_BACSU Probable BsuMI modification methylase subunit YdiO OS=Bacillus
subtilis (strain 168) GN=ydiO PE=2 SV=1
Length = 427
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 97/190 (51%), Gaps = 18/190 (9%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVA-----RSTWAIEFDSAAATAFKMN-NPGCTVFVDDCN 271
+ ++F+G GGLS G+ ++ A R ++A + + AA + ++ N +P ++ N
Sbjct: 84 INIADLFSGCGGLSLGVWEACRALGINPRFSFACDLNEAALSVYEKNFSPDFSL-----N 138
Query: 272 KILQRVIDNEV---CDDKKQKLPRK-GEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLI 327
+ +++ I+ E+ ++Q++ K +++ + GPPCQG S +N +R+ +N+L+
Sbjct: 139 ESIEKHINGELGAPLTVEEQRIKDKVKKIDFILAGPPCQGHSDLNNHTRRKDP--RNALL 196
Query: 328 VSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQ 387
+ + ++P L+ENV + K+ + TQ GY L A GVSQ
Sbjct: 197 MRVSRVIELFQPSSVLVENVPGIIHDKSGSFKEFKNHLKTQ-GYYFDEIVLNAEKLGVSQ 255
Query: 388 TRRRAIVLAA 397
RRR + A+
Sbjct: 256 ARRRYFIFAS 265
>sp|Q57983|MT51_METJA Probable modification methylase MJ0563 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0563 PE=3 SV=1
Length = 310
Score = 63.2 bits (152), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 86/188 (45%), Gaps = 29/188 (15%)
Query: 218 LRCLEVFAGAGGLSRG-LDKSGVARSTWAIE-FDSAAATAFKMNNPGCTVFVDDCNKILQ 275
+ +++F+G GG S+G LD++ R AIE F T + N V++DD +I
Sbjct: 1 MNVIDLFSGCGGFSKGFLDEN--FRILGAIENFKPVVKTY--LYNIKAPVWMDDIKRIPP 56
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQ-----RQYSAFKNSLIVSY 330
+ D + ++K V+++ G PPC+ F+ N+ + R Y L++ Y
Sbjct: 57 KAFDEFIKNEK---------VDVIIGSPPCEPFTKANKLIKDNPLDRLYKDKVGRLVLYY 107
Query: 331 LSYCDYYRPR----FFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVS 386
+ Y +Y+ R F++ENV K+ + + IG++ F L+A +G
Sbjct: 108 IDYVNYFTQRNDDLIFVMENVPQIKEIKDEL-----KKLFGDIGHKVYFNILRAEDYGNP 162
Query: 387 QTRRRAIV 394
R R +
Sbjct: 163 SKRARMFI 170
>sp|P25262|MTB1_HERAU Modification methylase HgiBI OS=Herpetosiphon aurantiacus GN=hgiBIM
PE=3 SV=1
Length = 437
Score = 62.8 bits (151), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 82/198 (41%), Gaps = 27/198 (13%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP--GCTVFVDDCNKILQ 275
R +++FAG GG GL+ G + E D A ++ N P G + D I
Sbjct: 4 FRFIDLFAGIGGFRLGLEAVG-GVCVASAEIDQQAIKVYRQNWPTDGVDHNLGDITAI-- 60
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 335
Q+LP ++L GG PCQ +S + + + + L +
Sbjct: 61 ------------QQLPAH---DVLVGGVPCQPWSIAGK--NQAFDDPRGQLWADVIRLVQ 103
Query: 336 YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 395
+P+ F+ ENV+ V +N + L++ + +GY + L + FGV+Q R R ++
Sbjct: 104 INQPKAFIFENVKGLVDPRNRLCLEIILDSFKDLGYSVFYKLLNSFDFGVAQNRDRVFIV 163
Query: 396 AAAP-----GEVLPKYPE 408
G P+Y E
Sbjct: 164 GIQQKLDLNGFSFPEYTE 181
>sp|Q58600|MT52_METJA Probable modification methylase MJ1200 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1200 PE=3 SV=1
Length = 366
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 105/245 (42%), Gaps = 57/245 (23%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN---------NPG------ 262
L+ +++F G GG SRG + G AIE + AA ++ +N PG
Sbjct: 5 LKFIDLFCGCGGFSRGFVEEGF-EPLVAIELNEDAAFSYALNFNGQIYEKIRPGEFKLKE 63
Query: 263 ----CTVF-------------------VDDCNKILQRVIDN----EVCDDKKQKLPRKGE 295
++ +++ K L V+ N E+ + +K + +
Sbjct: 64 LKGYVGIYPFKFPFEEEDIKWLKRLGTLNEKTKKLSPVVINDDIREIHAIEIEKFIKNKK 123
Query: 296 VEMLCGGPPCQGFSGMNRFNQ-----RQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNF 350
V+++ GGPPC+G++G N + R Y L++ Y+ +P+ F++ENV
Sbjct: 124 VDVIIGGPPCEGYTGANPKREKNPYDRLYKDETGRLVLEYIRIVGDLQPKIFVMENVPGI 183
Query: 351 VAFKNSMVLKMTMRCLTQIGYQ-CTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEP 409
+ +++ + +IGY+ F TL+A +G RRR V + E+ P+ +P
Sbjct: 184 KEVRGAII-----KEFREIGYEDVYFNTLRAEDYGNPSVRRRVFV---SNIEINPEKTQP 235
Query: 410 WTVFS 414
TV
Sbjct: 236 KTVIE 240
>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus
GN=Trdmt1 PE=2 SV=2
Length = 415
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 90/212 (42%), Gaps = 38/212 (17%)
Query: 217 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 275
PLR LE+++G GG+ L +S + A AI+ ++ A +K N P +L
Sbjct: 3 PLRVLELYSGIGGMHHALRESHIPAHVVAAIDVNTVANEVYKHNFPH--------THLLS 54
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 335
+ I+ +D K M+ PPCQ F+ + + S+L D
Sbjct: 55 KTIEGISLEDFD-----KLSFNMILMSPPCQPFTRIGL-----QGDMTDPRTTSFLYILD 104
Query: 336 YY-----RPRFFLLENVRNF-VAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTR 389
P++ LLENV+ F V+ ++++ C G+Q L G+ +R
Sbjct: 105 ILPRLQKLPKYILLENVKGFEVSSTRGLLIQTIEAC----GFQYQEFLLSPSSLGIPNSR 160
Query: 390 RRAIVLA---------AAPGEVLPKYPEPWTV 412
R ++A APG++L ++P+ TV
Sbjct: 161 LRYFLIAKLQSEPFPFQAPGQILMEFPKIVTV 192
>sp|P05102|MTH1_HAEPH Modification methylase HhaI OS=Haemophilus parahaemolyticus
GN=hhaIM PE=1 SV=1
Length = 327
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/236 (21%), Positives = 100/236 (42%), Gaps = 29/236 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
LR +++FAG GG L+ G A ++ E+D A ++MN F + + +V
Sbjct: 12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMN------FGEKPEGDITQV 64
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + D ++LC G PCQ FS + Q+ + + +L
Sbjct: 65 NEKTIPDH-----------DILCAGFPCQAFSISGK--QKGFEDSRGTLFFDIARIVREK 111
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P+ +ENV+NF + N L++ + ++ Y L A +G+ Q R R ++
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICF 171
Query: 398 APGEVLP--KYPEPW-------TVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTI 444
+ ++P+P+ + P + ++ I +K V T + + +T+
Sbjct: 172 RNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTV 227
>sp|P11408|MTM1_MORSP Modification methylase MspI OS=Moraxella sp. GN=mspIM PE=3 SV=1
Length = 418
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 95/219 (43%), Gaps = 24/219 (10%)
Query: 196 KNQTNK-PEEKDEITEWP----SIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDS 250
+NQ K EE EIT + + + +++F+G GG+ + + +G + ++ E D
Sbjct: 78 QNQITKNAEELAEITHIEERKDAYSSDFKFIDLFSGIGGIRQSFEVNG-GKCVFSSEIDP 136
Query: 251 AAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSG 310
A + N G F D + + +P+ ++LC G PCQ FS
Sbjct: 137 FAKFTY-YTNFGVVPFGD-------------ITKVEATTIPQH---DILCAGFPCQPFSH 179
Query: 311 MNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIG 370
+ + ++ + ++ + + + LENV + + LK+ + L +G
Sbjct: 180 IGKREGFEHPT-QGTMFHEIVRIIETKKTPVLFLENVPGLINHDDGNTLKVIIETLEDMG 238
Query: 371 YQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEP 409
Y+ L A HFG+ Q R+R ++A + ++P+P
Sbjct: 239 YKVHHTVLDASHFGIPQKRKRFYLVAFLNQNIHFEFPKP 277
>sp|P25266|MTE1_HERAU Modification methylase HgiEI OS=Herpetosiphon aurantiacus GN=hgiEIM
PE=3 SV=1
Length = 437
Score = 62.0 bits (149), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 25/197 (12%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
R +++FAG GG GL+ G + E D A + N P V
Sbjct: 4 FRFIDLFAGIGGFRLGLEAVG-GVCVASAEIDQQAIKVYWQNWPTDGV------------ 50
Query: 278 IDNEVCD-DKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDY 336
D+ + D + Q+LP ++L GG PCQ +S + + + + L +
Sbjct: 51 -DHNLGDITQIQQLPAH---DVLVGGVPCQPWSIAGK--NQAFDDPRGQLWADVIRLVQI 104
Query: 337 YRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
+P+ F+ ENV+ V +N + L++ + +GY + L + FGV+Q R R ++
Sbjct: 105 NQPKAFIFENVKGLVDPRNRLCLEIILDSFKDLGYSVFYKLLNSFDFGVAQNRDRVFIVG 164
Query: 397 AAP-----GEVLPKYPE 408
G P+Y E
Sbjct: 165 IQQKLDLNGFSFPEYAE 181
>sp|P34879|MTS2_SHISO Modification methylase SsoII OS=Shigella sonnei GN=ssoIIM PE=3 SV=1
Length = 379
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 85/221 (38%), Gaps = 23/221 (10%)
Query: 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVI 278
R +++FAG GG G ++ ++ E+D A + N + D + + ++
Sbjct: 73 RMIDLFAGIGGTRLGFHQTNAVNVVFSSEWDKFAQKTYHAN------YGDFPDGDITKID 126
Query: 279 DNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYR 338
+ ++ D E+L GG PC FS ++ ++ + +L +
Sbjct: 127 EKDIPDH-----------EILVGGFPCVAFSQAGL--KKGFNDTRGTLFFDIARIIKEKK 173
Query: 339 PRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAA 398
P FLLENV+N + + L ++ Y + A FGV Q R R ++
Sbjct: 174 PHAFLLENVKNLLGHDKGRTFSIIKNTLEELNYTVYYNIFAAKDFGVPQNRERIYIVGFN 233
Query: 399 PGEVLPK----YPEPWTVFSPRTSQLNVTISKKTYVSTCKW 435
+V +P P + L ++ K +S W
Sbjct: 234 KEKVRNHEHFTFPTPLKTKTRVGDILEKSVDNKYTLSDALW 274
>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus
GN=Trdmt1 PE=2 SV=1
Length = 391
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 34/210 (16%)
Query: 217 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 275
PLR LE+++G GG+ L +S V A AI+ + A +K N P + I
Sbjct: 3 PLRVLELYSGIGGMHHALRESRVPAHVVAAIDVSTVANEVYKHNFPHTHLLAKTIEGISL 62
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGM---NRFNQRQYSAFKNSL-IVSYL 331
D K M+ PPCQ F+ + + R+ ++F L I+ L
Sbjct: 63 EEFD-------------KLSFNMILMSPPCQPFTRIGLQGDMSDRRTNSFLYILDILPRL 109
Query: 332 SYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRR 391
P++ LLENV+ F +L TM G+Q L G+ +R R
Sbjct: 110 QKL----PKYILLENVKGFEVSSTRGLLIQTMEA---CGFQYQEFLLSPSSLGIPNSRLR 162
Query: 392 AIVLA---------AAPGEVLPKYPEPWTV 412
++A APG++L ++P TV
Sbjct: 163 YFLIAKLQSEPLCFQAPGQILMEFPNSGTV 192
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,185,803
Number of Sequences: 539616
Number of extensions: 8316851
Number of successful extensions: 18538
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 18302
Number of HSP's gapped (non-prelim): 119
length of query: 487
length of database: 191,569,459
effective HSP length: 121
effective length of query: 366
effective length of database: 126,275,923
effective search space: 46216987818
effective search space used: 46216987818
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)