Query psy13720
Match_columns 487
No_of_seqs 321 out of 2085
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 18:46:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13720.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13720hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00145 DNA_methylase: C-5 cy 100.0 8.7E-46 1.9E-50 375.5 12.4 168 218-404 1-168 (335)
2 TIGR00675 dcm DNA-methyltransf 100.0 5.3E-44 1.1E-48 360.7 17.5 173 220-411 1-175 (315)
3 cd00315 Cyt_C5_DNA_methylase C 100.0 4.2E-43 9.2E-48 347.8 18.5 169 218-404 1-169 (275)
4 COG0270 Dcm Site-specific DNA 100.0 1.4E-43 3E-48 359.8 14.6 168 216-400 2-169 (328)
5 PRK10458 DNA cytosine methylas 100.0 1.1E-40 2.3E-45 348.8 17.0 183 216-403 87-292 (467)
6 cd04708 BAH_plantDCM_II BAH, o 100.0 3.9E-40 8.5E-45 304.0 16.5 196 6-230 1-202 (202)
7 cd04711 BAH_Dnmt1_II BAH, or B 100.0 5.2E-38 1.1E-42 269.3 10.4 136 45-180 1-137 (137)
8 cd04710 BAH_fungalPHD BAH, or 100.0 1.6E-28 3.4E-33 216.0 12.9 125 5-176 4-134 (135)
9 cd04716 BAH_plantDCM_I BAH, or 100.0 1.7E-28 3.7E-33 211.9 12.3 122 10-180 1-122 (122)
10 cd04709 BAH_MTA BAH, or Bromo 99.9 7.5E-26 1.6E-30 204.7 11.5 111 68-186 17-147 (164)
11 cd04760 BAH_Dnmt1_I BAH, or Br 99.9 1.4E-25 3.1E-30 192.3 11.0 116 10-176 1-124 (124)
12 cd04713 BAH_plant_3 BAH, or Br 99.9 7.4E-25 1.6E-29 196.3 13.4 126 2-178 10-136 (146)
13 PF01426 BAH: BAH domain; Int 99.9 6.4E-25 1.4E-29 190.4 10.8 119 11-179 1-119 (119)
14 cd04714 BAH_BAHCC1 BAH, or Bro 99.9 9.2E-25 2E-29 189.8 10.2 116 10-174 1-118 (121)
15 smart00439 BAH Bromo adjacent 99.9 9.2E-24 2E-28 183.3 12.5 105 67-179 15-120 (120)
16 cd04712 BAH_DCM_I BAH, or Brom 99.9 1.3E-23 2.9E-28 184.1 13.3 125 8-179 1-129 (130)
17 cd04717 BAH_polybromo BAH, or 99.9 9.2E-24 2E-28 184.0 11.1 119 10-178 1-119 (121)
18 cd04370 BAH BAH, or Bromo Adja 99.9 9.3E-24 2E-28 183.7 10.6 121 10-177 1-121 (123)
19 cd04715 BAH_Orc1p_like BAH, or 99.9 3.4E-22 7.3E-27 180.5 11.9 126 1-173 18-149 (159)
20 KOG0919|consensus 99.9 2.4E-22 5.3E-27 187.0 6.6 166 216-399 2-170 (338)
21 cd04721 BAH_plant_1 BAH, or Br 99.8 1.9E-20 4.1E-25 164.2 9.5 115 7-171 2-117 (130)
22 cd04718 BAH_plant_2 BAH, or Br 99.8 1.1E-19 2.4E-24 159.4 0.6 97 68-177 50-146 (148)
23 cd04720 BAH_Orc1p_Yeast BAH, o 99.7 2.9E-16 6.2E-21 145.3 11.3 119 9-176 49-175 (179)
24 cd04719 BAH_Orc1p_animal BAH, 99.7 2.2E-16 4.7E-21 137.3 9.0 117 11-173 2-123 (128)
25 KOG1886|consensus 99.5 2.7E-14 6E-19 146.0 7.6 126 3-177 40-167 (464)
26 KOG1827|consensus 99.2 6.1E-12 1.3E-16 133.6 6.0 122 6-177 184-305 (629)
27 KOG3554|consensus 99.0 2.3E-11 5E-16 122.4 -1.5 108 68-183 19-168 (693)
28 PF09445 Methyltransf_15: RNA 97.9 6.8E-05 1.5E-09 68.4 8.7 78 219-312 2-86 (163)
29 PF13659 Methyltransf_26: Meth 97.8 0.00011 2.3E-09 62.8 9.1 77 218-309 2-84 (117)
30 PRK11783 rlmL 23S rRNA m(2)G24 97.7 0.00053 1.2E-08 77.0 15.3 151 216-396 538-700 (702)
31 COG2263 Predicted RNA methylas 97.7 6.2E-05 1.4E-09 69.4 6.3 118 216-376 45-166 (198)
32 TIGR02085 meth_trns_rumB 23S r 97.7 0.00039 8.4E-09 72.3 12.5 70 218-304 235-309 (374)
33 TIGR03704 PrmC_rel_meth putati 97.7 0.00063 1.4E-08 66.8 13.3 138 217-377 87-239 (251)
34 PF03602 Cons_hypoth95: Conser 97.6 0.00012 2.7E-09 68.3 6.8 76 216-304 42-123 (183)
35 COG2520 Predicted methyltransf 97.6 0.00085 1.8E-08 68.2 12.1 125 216-376 188-318 (341)
36 TIGR00479 rumA 23S rRNA (uraci 97.5 0.0011 2.4E-08 70.2 13.7 121 216-375 292-417 (431)
37 PHA03411 putative methyltransf 97.5 0.0015 3.2E-08 64.5 12.2 140 218-375 66-211 (279)
38 PRK10909 rsmD 16S rRNA m(2)G96 97.4 0.00053 1.1E-08 64.9 8.2 73 216-304 53-130 (199)
39 TIGR00095 RNA methyltransferas 97.4 0.00046 9.9E-09 64.8 7.6 76 216-304 49-130 (189)
40 COG0742 N6-adenine-specific me 97.3 0.00074 1.6E-08 62.7 7.8 77 216-306 43-125 (187)
41 KOG3420|consensus 97.3 0.00025 5.4E-09 62.5 4.2 72 216-304 48-123 (185)
42 PRK03522 rumB 23S rRNA methylu 97.3 0.0024 5.3E-08 64.8 11.9 72 217-305 174-250 (315)
43 PRK15128 23S rRNA m(5)C1962 me 97.2 0.0011 2.3E-08 69.5 8.1 77 216-305 220-303 (396)
44 PRK05031 tRNA (uracil-5-)-meth 97.2 0.0065 1.4E-07 63.0 13.6 83 219-304 209-297 (362)
45 PF02475 Met_10: Met-10+ like- 97.1 0.00063 1.4E-08 64.3 5.3 72 216-304 101-178 (200)
46 TIGR00537 hemK_rel_arch HemK-r 97.1 0.0089 1.9E-07 55.3 12.9 144 217-395 20-176 (179)
47 TIGR00446 nop2p NOL1/NOP2/sun 97.1 0.0054 1.2E-07 60.7 11.7 81 216-312 71-157 (264)
48 PHA03412 putative methyltransf 97.1 0.0048 1E-07 59.6 10.5 73 217-307 50-126 (241)
49 PRK14967 putative methyltransf 97.0 0.025 5.4E-07 54.4 14.9 137 216-376 36-182 (223)
50 COG2265 TrmA SAM-dependent met 97.0 0.0076 1.7E-07 63.7 12.1 117 216-374 293-416 (432)
51 PRK13168 rumA 23S rRNA m(5)U19 96.9 0.012 2.6E-07 62.7 13.0 77 216-306 297-378 (443)
52 PRK10901 16S rRNA methyltransf 96.8 0.0085 1.8E-07 63.5 11.2 83 216-312 244-330 (427)
53 COG1092 Predicted SAM-dependen 96.7 0.026 5.7E-07 58.7 13.5 136 217-374 218-362 (393)
54 PRK14904 16S rRNA methyltransf 96.7 0.012 2.6E-07 62.7 11.3 81 216-313 250-336 (445)
55 TIGR03534 RF_mod_PrmC protein- 96.7 0.016 3.6E-07 56.2 11.4 77 217-310 88-169 (251)
56 PF05175 MTS: Methyltransferas 96.7 0.0036 7.9E-08 57.6 6.1 72 216-304 31-107 (170)
57 PRK09328 N5-glutamine S-adenos 96.6 0.035 7.5E-07 54.8 13.3 78 216-310 108-190 (275)
58 TIGR00308 TRM1 tRNA(guanine-26 96.6 0.0057 1.2E-07 63.5 7.7 59 217-276 45-110 (374)
59 TIGR03533 L3_gln_methyl protei 96.6 0.0098 2.1E-07 59.5 9.0 77 217-310 122-204 (284)
60 PRK14902 16S rRNA methyltransf 96.6 0.016 3.6E-07 61.6 11.3 82 216-312 250-337 (444)
61 PRK14901 16S rRNA methyltransf 96.5 0.02 4.4E-07 60.7 11.4 84 216-312 252-342 (434)
62 smart00650 rADc Ribosomal RNA 96.5 0.0078 1.7E-07 55.2 7.3 71 216-304 13-86 (169)
63 COG2890 HemK Methylase of poly 96.5 0.066 1.4E-06 53.4 14.1 132 219-371 113-255 (280)
64 cd02440 AdoMet_MTases S-adenos 96.4 0.026 5.7E-07 45.2 9.3 74 219-308 1-79 (107)
65 PRK04338 N(2),N(2)-dimethylgua 96.4 0.0097 2.1E-07 62.0 7.9 57 217-274 58-120 (382)
66 TIGR01177 conserved hypothetic 96.1 0.023 5.1E-07 58.0 9.1 76 216-310 182-263 (329)
67 PRK01581 speE spermidine synth 96.1 0.45 9.8E-06 49.0 18.1 153 216-402 150-317 (374)
68 PRK03612 spermidine synthase; 96.1 0.16 3.4E-06 55.3 15.7 151 216-399 297-460 (521)
69 PRK00121 trmB tRNA (guanine-N( 96.1 0.091 2E-06 49.7 12.1 132 216-374 40-177 (202)
70 PRK14968 putative methyltransf 96.1 0.078 1.7E-06 48.9 11.5 73 216-307 23-102 (188)
71 PF05958 tRNA_U5-meth_tr: tRNA 96.1 0.0047 1E-07 63.7 3.5 83 219-304 199-287 (352)
72 PF13847 Methyltransf_31: Meth 96.0 0.021 4.5E-07 51.2 7.1 76 215-305 2-83 (152)
73 KOG2730|consensus 96.0 0.013 2.9E-07 55.3 5.8 82 216-311 94-181 (263)
74 PRK14903 16S rRNA methyltransf 96.0 0.064 1.4E-06 56.9 11.6 82 216-312 237-324 (431)
75 COG4123 Predicted O-methyltran 95.9 0.019 4.1E-07 55.9 6.6 75 216-305 44-125 (248)
76 PRK00377 cbiT cobalt-precorrin 95.8 0.32 7E-06 45.7 14.8 121 216-376 40-168 (198)
77 TIGR00563 rsmB ribosomal RNA s 95.8 0.068 1.5E-06 56.6 11.0 83 216-313 238-327 (426)
78 TIGR02143 trmA_only tRNA (urac 95.8 0.028 6E-07 58.1 7.9 55 219-275 200-259 (353)
79 PRK11805 N5-glutamine S-adenos 95.8 0.025 5.5E-07 57.2 7.3 75 218-309 135-215 (307)
80 PF10672 Methyltrans_SAM: S-ad 95.7 0.024 5.1E-07 56.7 6.3 79 216-310 123-208 (286)
81 PF01170 UPF0020: Putative RNA 95.5 0.034 7.4E-07 51.7 6.6 104 216-344 28-148 (179)
82 PRK08287 cobalt-precorrin-6Y C 95.4 0.62 1.3E-05 43.2 14.8 45 216-260 31-75 (187)
83 TIGR00417 speE spermidine synt 95.3 1.1 2.3E-05 44.5 16.9 148 219-398 75-232 (270)
84 TIGR00536 hemK_fam HemK family 95.3 0.082 1.8E-06 52.8 8.8 76 218-310 116-197 (284)
85 PF12847 Methyltransf_18: Meth 95.0 0.082 1.8E-06 44.3 6.8 52 217-270 2-61 (112)
86 PRK14966 unknown domain/N5-glu 94.9 0.045 9.8E-07 57.3 6.0 148 218-394 253-415 (423)
87 PLN02585 magnesium protoporphy 94.8 0.38 8.1E-06 48.9 12.2 44 216-261 144-187 (315)
88 PRK14896 ksgA 16S ribosomal RN 94.6 0.069 1.5E-06 52.6 6.1 69 216-304 29-100 (258)
89 PRK00811 spermidine synthase; 94.6 1.3 2.8E-05 44.2 15.3 147 217-398 77-237 (283)
90 PRK00274 ksgA 16S ribosomal RN 94.5 0.075 1.6E-06 52.8 6.1 56 215-272 41-98 (272)
91 KOG1227|consensus 94.3 0.023 4.9E-07 56.2 1.8 42 218-260 196-238 (351)
92 TIGR00755 ksgA dimethyladenosi 94.2 0.1 2.3E-06 51.1 6.4 55 216-272 29-86 (253)
93 PRK09489 rsmC 16S ribosomal RN 94.1 0.12 2.7E-06 53.0 7.0 68 219-304 199-270 (342)
94 TIGR00080 pimt protein-L-isoas 94.0 0.17 3.6E-06 48.3 7.1 75 215-305 76-156 (215)
95 PRK11933 yebU rRNA (cytosine-C 94.0 0.58 1.3E-05 50.1 11.9 83 216-313 113-201 (470)
96 PRK15001 SAM-dependent 23S rib 93.9 0.098 2.1E-06 54.4 5.7 43 218-260 230-272 (378)
97 TIGR00091 tRNA (guanine-N(7)-) 93.7 1.9 4.1E-05 40.4 13.6 129 216-370 16-149 (194)
98 PRK01544 bifunctional N5-gluta 93.7 0.2 4.3E-06 54.4 7.8 147 217-395 139-304 (506)
99 PRK04266 fibrillarin; Provisio 93.4 4 8.7E-05 39.4 15.6 147 215-397 71-224 (226)
100 PF02005 TRM: N2,N2-dimethylgu 93.3 0.14 3E-06 53.4 5.7 58 216-274 49-115 (377)
101 PRK01683 trans-aconitate 2-met 93.3 0.32 6.9E-06 47.6 7.9 73 216-305 31-103 (258)
102 PRK07402 precorrin-6B methylas 93.3 0.22 4.7E-06 46.8 6.5 57 216-272 40-101 (196)
103 PRK10742 putative methyltransf 93.2 0.3 6.4E-06 47.7 7.3 42 217-260 89-130 (250)
104 PTZ00338 dimethyladenosine tra 93.1 0.31 6.7E-06 49.0 7.7 71 215-305 35-111 (294)
105 PLN02823 spermine synthase 93.0 7.3 0.00016 40.0 17.5 151 218-399 105-268 (336)
106 PRK10258 biotin biosynthesis p 92.9 0.28 6E-06 47.8 7.0 54 216-271 42-95 (251)
107 PLN02672 methionine S-methyltr 92.9 0.21 4.7E-06 58.3 7.0 44 217-260 119-162 (1082)
108 TIGR03587 Pse_Me-ase pseudamin 92.9 0.25 5.4E-06 46.9 6.3 54 216-270 43-97 (204)
109 KOG2904|consensus 92.7 0.25 5.4E-06 48.5 6.0 79 216-306 148-233 (328)
110 PLN02396 hexaprenyldihydroxybe 92.6 0.37 7.9E-06 49.1 7.5 42 216-259 131-172 (322)
111 COG0144 Sun tRNA and rRNA cyto 92.6 1.4 3.1E-05 45.5 11.8 85 216-313 156-247 (355)
112 TIGR00138 gidB 16S rRNA methyl 92.5 0.34 7.3E-06 45.1 6.5 57 216-272 42-103 (181)
113 TIGR02021 BchM-ChlM magnesium 92.4 0.31 6.7E-06 46.5 6.3 44 216-261 55-98 (219)
114 COG2521 Predicted archaeal met 92.2 0.8 1.7E-05 44.1 8.6 136 215-377 133-276 (287)
115 PRK11207 tellurite resistance 92.1 0.51 1.1E-05 44.4 7.3 42 216-259 30-71 (197)
116 PRK11036 putative S-adenosyl-L 91.9 0.69 1.5E-05 45.3 8.3 56 216-273 44-105 (255)
117 KOG3191|consensus 91.9 3.1 6.8E-05 38.6 11.7 135 217-377 44-192 (209)
118 TIGR02987 met_A_Alw26 type II 91.8 0.21 4.5E-06 54.4 4.8 83 216-309 31-126 (524)
119 TIGR02752 MenG_heptapren 2-hep 91.7 0.62 1.3E-05 44.6 7.6 73 216-304 45-123 (231)
120 COG2227 UbiG 2-polyprenyl-3-me 91.5 0.52 1.1E-05 45.5 6.6 46 216-263 59-104 (243)
121 PTZ00146 fibrillarin; Provisio 90.9 11 0.00023 38.0 15.4 151 214-399 130-287 (293)
122 PLN02366 spermidine synthase 90.7 19 0.00041 36.5 17.4 151 216-399 91-254 (308)
123 COG2264 PrmA Ribosomal protein 90.6 0.49 1.1E-05 47.5 5.7 127 215-377 161-287 (300)
124 PLN02336 phosphoethanolamine N 90.6 2 4.3E-05 46.1 10.9 152 217-397 38-210 (475)
125 TIGR00406 prmA ribosomal prote 90.4 0.5 1.1E-05 47.3 5.8 44 216-260 159-202 (288)
126 PRK00517 prmA ribosomal protei 90.4 0.52 1.1E-05 46.1 5.7 117 216-376 119-236 (250)
127 TIGR02072 BioC biotin biosynth 90.3 0.89 1.9E-05 43.3 7.2 75 216-306 34-109 (240)
128 PRK05785 hypothetical protein; 90.0 2.7 5.9E-05 40.4 10.3 92 217-345 52-145 (226)
129 COG1041 Predicted DNA modifica 89.9 5.2 0.00011 40.9 12.4 141 216-397 197-345 (347)
130 PRK00312 pcm protein-L-isoaspa 89.9 0.72 1.6E-05 43.7 6.1 44 215-260 77-120 (212)
131 PRK15451 tRNA cmo(5)U34 methyl 89.8 2.7 6E-05 40.9 10.3 43 216-260 56-102 (247)
132 PRK06202 hypothetical protein; 89.7 1.1 2.4E-05 43.1 7.4 45 216-260 60-108 (232)
133 PLN02781 Probable caffeoyl-CoA 89.7 4.2 9.1E-05 39.4 11.4 78 215-302 67-151 (234)
134 PF06325 PrmA: Ribosomal prote 89.6 0.51 1.1E-05 47.4 5.0 122 216-377 161-282 (295)
135 PF13649 Methyltransf_25: Meth 89.6 0.6 1.3E-05 38.5 4.7 54 220-273 1-61 (101)
136 PRK11727 23S rRNA mA1618 methy 89.6 1.1 2.4E-05 45.6 7.5 43 216-260 114-158 (321)
137 COG3963 Phospholipid N-methylt 89.5 2.5 5.4E-05 38.7 8.7 86 215-311 47-133 (194)
138 COG2242 CobL Precorrin-6B meth 88.5 16 0.00036 34.0 13.6 116 216-372 34-154 (187)
139 PRK00107 gidB 16S rRNA methylt 88.4 1.5 3.2E-05 41.1 6.9 43 217-259 46-88 (187)
140 PF01189 Nol1_Nop2_Fmu: NOL1/N 88.3 2.2 4.7E-05 42.7 8.5 84 216-313 85-174 (283)
141 PRK13944 protein-L-isoaspartat 88.3 1.1 2.4E-05 42.4 6.1 45 216-260 72-117 (205)
142 TIGR02469 CbiT precorrin-6Y C5 88.3 1.3 2.8E-05 37.4 6.0 44 216-259 19-62 (124)
143 PRK11188 rrmJ 23S rRNA methylt 87.6 0.93 2E-05 43.1 5.2 52 216-273 51-103 (209)
144 PF02384 N6_Mtase: N-6 DNA Met 87.3 0.77 1.7E-05 46.3 4.7 43 216-259 46-96 (311)
145 PRK06922 hypothetical protein; 87.3 1.7 3.7E-05 48.1 7.5 77 216-306 418-498 (677)
146 TIGR01934 MenG_MenH_UbiE ubiqu 87.2 1.9 4.1E-05 40.6 7.1 56 216-271 39-98 (223)
147 PRK12335 tellurite resistance 87.0 1.2 2.5E-05 44.6 5.7 40 218-259 122-161 (287)
148 KOG2078|consensus 87.0 0.51 1.1E-05 49.0 3.1 57 217-275 250-313 (495)
149 PLN02233 ubiquinone biosynthes 86.9 1.8 3.9E-05 42.7 6.9 44 216-259 73-117 (261)
150 TIGR00478 tly hemolysin TlyA f 86.8 1.4 3.1E-05 42.6 5.9 46 216-262 75-120 (228)
151 PLN02244 tocopherol O-methyltr 86.6 1.5 3.3E-05 45.0 6.4 42 216-259 118-160 (340)
152 TIGR03840 TMPT_Se_Te thiopurin 86.5 1.6 3.4E-05 41.7 6.1 41 216-258 34-74 (213)
153 PRK04148 hypothetical protein; 86.5 2 4.2E-05 38.0 6.1 52 216-271 16-68 (134)
154 PRK00216 ubiE ubiquinone/menaq 86.5 1.8 4E-05 41.2 6.6 46 216-261 51-97 (239)
155 PRK05134 bifunctional 3-demeth 86.4 3.1 6.8E-05 39.8 8.2 43 216-260 48-90 (233)
156 PRK15068 tRNA mo(5)U34 methylt 85.9 2.1 4.5E-05 43.7 6.9 39 216-255 122-160 (322)
157 TIGR01983 UbiG ubiquinone bios 85.3 2.6 5.7E-05 39.9 7.0 43 216-260 45-87 (224)
158 PRK07580 Mg-protoporphyrin IX 85.3 1.6 3.6E-05 41.5 5.6 43 216-260 63-105 (230)
159 PRK13942 protein-L-isoaspartat 85.2 3 6.6E-05 39.6 7.3 46 215-260 75-121 (212)
160 TIGR02081 metW methionine bios 85.2 2.2 4.7E-05 39.8 6.2 74 216-306 13-86 (194)
161 PF02086 MethyltransfD12: D12 85.2 0.83 1.8E-05 44.5 3.5 40 216-257 20-59 (260)
162 COG2226 UbiE Methylase involve 84.9 2.9 6.3E-05 40.7 7.0 47 216-262 51-97 (238)
163 KOG2187|consensus 84.8 1.5 3.2E-05 46.8 5.2 43 216-260 383-425 (534)
164 PF01555 N6_N4_Mtase: DNA meth 84.7 1.8 3.8E-05 40.8 5.5 38 217-256 192-229 (231)
165 PRK04457 spermidine synthase; 84.3 4.5 9.9E-05 39.9 8.3 121 217-368 67-193 (262)
166 PF01564 Spermine_synth: Sperm 83.9 20 0.00044 34.9 12.6 143 216-386 76-228 (246)
167 PRK08317 hypothetical protein; 83.9 3.6 7.9E-05 38.9 7.3 45 215-259 18-63 (241)
168 PRK14103 trans-aconitate 2-met 83.5 3.7 8.1E-05 40.0 7.3 72 216-306 29-100 (255)
169 PTZ00098 phosphoethanolamine N 83.5 3.3 7.1E-05 40.8 6.9 47 213-261 49-96 (263)
170 PRK11088 rrmA 23S rRNA methylt 83.4 3.2 6.9E-05 41.1 6.8 56 216-271 85-143 (272)
171 PRK11783 rlmL 23S rRNA m(2)G24 83.4 7.9 0.00017 43.8 10.7 85 242-349 258-351 (702)
172 TIGR00452 methyltransferase, p 83.3 3.6 7.8E-05 41.8 7.2 40 216-256 121-160 (314)
173 PRK13255 thiopurine S-methyltr 83.2 2.9 6.2E-05 40.1 6.2 40 216-257 37-76 (218)
174 PF08241 Methyltransf_11: Meth 82.6 4 8.7E-05 32.2 6.0 66 221-303 1-68 (95)
175 TIGR00438 rrmJ cell division p 82.5 2.2 4.8E-05 39.5 5.0 54 212-271 28-82 (188)
176 PTZ00112 origin recognition co 82.4 2 4.4E-05 49.1 5.4 81 1-106 441-522 (1164)
177 PF05185 PRMT5: PRMT5 arginine 81.6 1.8 3.9E-05 46.2 4.5 58 216-273 186-253 (448)
178 COG0030 KsgA Dimethyladenosine 81.4 3.5 7.7E-05 40.6 6.1 55 216-272 30-87 (259)
179 PRK13943 protein-L-isoaspartat 81.4 4.2 9.1E-05 41.4 6.9 45 215-259 79-124 (322)
180 PF00398 RrnaAD: Ribosomal RNA 80.6 2.4 5.3E-05 41.7 4.8 56 216-273 30-88 (262)
181 PRK00050 16S rRNA m(4)C1402 me 80.6 7.2 0.00016 39.2 8.2 59 216-274 19-81 (296)
182 PRK14121 tRNA (guanine-N(7)-)- 80.5 6.9 0.00015 40.9 8.2 76 217-306 123-203 (390)
183 COG3897 Predicted methyltransf 80.1 1.7 3.6E-05 40.8 3.2 85 210-310 73-157 (218)
184 PF01209 Ubie_methyltran: ubiE 80.0 3.5 7.6E-05 40.0 5.6 101 216-347 47-155 (233)
185 COG1867 TRM1 N2,N2-dimethylgua 79.4 5.8 0.00013 40.8 7.0 58 217-276 53-117 (380)
186 PF07021 MetW: Methionine bios 79.2 11 0.00023 35.5 8.1 56 215-274 12-68 (193)
187 PF10383 Clr2: Transcription-s 78.0 31 0.00068 30.6 10.5 25 1-25 1-25 (139)
188 TIGR00477 tehB tellurite resis 77.9 4.9 0.00011 37.6 5.7 42 216-259 30-71 (195)
189 COG2813 RsmC 16S RNA G1207 met 77.4 4.4 9.5E-05 40.6 5.4 68 219-304 161-233 (300)
190 PF03848 TehB: Tellurite resis 76.7 5.4 0.00012 37.5 5.5 41 216-258 30-70 (192)
191 PF13489 Methyltransf_23: Meth 76.2 5.8 0.00012 35.0 5.5 39 215-255 21-59 (161)
192 PLN02490 MPBQ/MSBQ methyltrans 75.8 9.9 0.00022 39.1 7.7 146 216-394 113-272 (340)
193 PLN02476 O-methyltransferase 75.0 32 0.0007 34.3 10.8 80 215-304 117-203 (278)
194 PF03291 Pox_MCEL: mRNA cappin 73.5 4.2 9E-05 41.7 4.3 40 216-256 62-101 (331)
195 PRK11524 putative methyltransf 73.4 5.4 0.00012 39.8 5.0 42 217-260 209-250 (284)
196 TIGR01444 fkbM_fam methyltrans 73.3 7 0.00015 34.1 5.2 42 219-260 1-42 (143)
197 smart00828 PKS_MT Methyltransf 72.9 7.8 0.00017 36.7 5.8 42 219-260 2-43 (224)
198 PF05401 NodS: Nodulation prot 72.3 7.1 0.00015 36.8 5.1 68 218-304 45-115 (201)
199 PF11599 AviRa: RRNA methyltra 70.6 6.6 0.00014 37.5 4.5 46 215-260 50-97 (246)
200 PF01728 FtsJ: FtsJ-like methy 70.4 3.4 7.3E-05 38.0 2.6 114 216-348 23-141 (181)
201 TIGR00740 methyltransferase, p 70.0 18 0.00038 34.8 7.6 44 216-259 53-98 (239)
202 TIGR03438 probable methyltrans 69.8 16 0.00034 36.8 7.4 57 216-272 63-126 (301)
203 PRK11873 arsM arsenite S-adeno 69.1 19 0.00041 35.3 7.8 45 215-259 76-121 (272)
204 PLN02336 phosphoethanolamine N 69.0 10 0.00023 40.5 6.4 45 214-260 264-309 (475)
205 KOG1500|consensus 68.8 10 0.00022 38.5 5.6 41 216-257 177-217 (517)
206 PRK13699 putative methylase; P 68.6 8.4 0.00018 37.2 5.0 41 216-258 163-203 (227)
207 KOG2133|consensus 65.0 5 0.00011 45.6 2.8 107 68-179 159-284 (1229)
208 COG0116 Predicted N6-adenine-s 64.3 13 0.00027 38.7 5.5 74 242-340 256-336 (381)
209 PRK11760 putative 23S rRNA C24 64.1 14 0.00031 37.9 5.7 52 214-269 209-260 (357)
210 PLN03075 nicotianamine synthas 63.7 47 0.001 33.4 9.3 45 216-260 123-169 (296)
211 KOG1270|consensus 63.4 9.1 0.0002 37.7 4.0 41 217-259 90-130 (282)
212 PF02390 Methyltransf_4: Putat 62.1 23 0.0005 33.3 6.4 125 219-369 20-149 (195)
213 KOG1122|consensus 61.1 18 0.0004 37.9 5.9 81 215-312 240-329 (460)
214 KOG1271|consensus 59.3 4.4 9.6E-05 37.7 1.0 37 219-255 70-106 (227)
215 KOG0820|consensus 59.1 30 0.00064 34.4 6.6 77 213-309 55-137 (315)
216 COG5076 Transcription factor i 58.0 1.7 3.8E-05 45.1 -2.1 72 68-147 291-362 (371)
217 PRK01544 bifunctional N5-gluta 55.0 1.5E+02 0.0034 32.1 12.2 129 216-371 347-480 (506)
218 KOG1499|consensus 53.7 20 0.00043 36.7 4.7 44 216-260 60-106 (346)
219 COG4076 Predicted RNA methylas 53.2 19 0.00042 33.7 4.1 52 218-271 34-90 (252)
220 COG4106 Tam Trans-aconitate me 52.0 41 0.00088 32.4 6.1 103 216-351 30-133 (257)
221 PRK11705 cyclopropane fatty ac 51.7 30 0.00065 36.1 5.9 45 215-261 166-211 (383)
222 COG0220 Predicted S-adenosylme 51.5 1.2E+02 0.0025 29.3 9.5 79 218-309 50-133 (227)
223 PF10294 Methyltransf_16: Puta 49.4 36 0.00077 31.2 5.4 43 215-259 44-87 (173)
224 COG4262 Predicted spermidine s 48.4 2.6E+02 0.0055 29.3 11.5 135 234-402 308-455 (508)
225 PHA01634 hypothetical protein 47.1 38 0.00083 29.8 4.7 45 216-261 28-72 (156)
226 PF01135 PCMT: Protein-L-isoas 46.8 32 0.00069 32.8 4.7 76 214-305 70-151 (209)
227 PF13679 Methyltransf_32: Meth 42.4 58 0.0013 28.5 5.5 43 215-258 24-71 (141)
228 PF11302 DUF3104: Protein of u 41.8 79 0.0017 25.0 5.3 17 67-83 24-40 (75)
229 COG2230 Cfa Cyclopropane fatty 40.0 63 0.0014 32.3 5.7 44 213-258 69-113 (283)
230 KOG2361|consensus 38.9 37 0.0008 33.1 3.8 41 219-261 74-118 (264)
231 KOG2198|consensus 38.4 39 0.00085 34.9 4.1 92 213-311 152-252 (375)
232 PRK13256 thiopurine S-methyltr 37.6 61 0.0013 31.3 5.1 41 217-259 44-84 (226)
233 TIGR00571 dam DNA adenine meth 36.0 30 0.00064 34.2 2.8 37 219-259 28-64 (266)
234 PRK05414 urocanate hydratase; 34.0 66 0.0014 34.7 5.0 53 221-276 169-225 (556)
235 COG4671 Predicted glycosyl tra 33.9 72 0.0016 33.0 5.1 52 295-349 43-117 (400)
236 COG4747 ACT domain-containing 33.4 66 0.0014 27.7 4.0 38 341-386 7-45 (142)
237 COG3640 CooC CO dehydrogenase 30.3 5.3E+02 0.012 25.3 11.0 105 242-354 31-149 (255)
238 COG1182 AcpD Acyl carrier prot 29.1 3.1E+02 0.0067 26.0 8.1 120 250-400 23-144 (202)
239 TIGR01228 hutU urocanate hydra 28.6 1E+02 0.0022 33.1 5.3 53 221-276 160-216 (545)
240 smart00138 MeTrc Methyltransfe 28.1 93 0.002 30.6 4.8 44 216-259 99-151 (264)
241 COG3392 Adenine-specific DNA m 28.1 46 0.001 32.9 2.5 33 219-253 30-62 (330)
242 PF08940 DUF1918: Domain of un 28.1 1E+02 0.0022 23.1 3.7 27 67-100 16-42 (58)
243 PF01175 Urocanase: Urocanase; 28.0 1E+02 0.0022 33.3 5.2 52 222-276 160-215 (546)
244 PF01488 Shikimate_DH: Shikima 27.7 1.6E+02 0.0035 25.5 5.8 68 224-308 17-88 (135)
245 cd05291 HicDH_like L-2-hydroxy 27.6 2.5E+02 0.0054 28.1 8.0 20 325-344 95-114 (306)
246 PF09926 DUF2158: Uncharacteri 27.4 79 0.0017 23.2 3.1 13 13-25 1-13 (53)
247 PF01408 GFO_IDH_MocA: Oxidore 26.3 2E+02 0.0044 23.7 6.1 61 224-304 5-71 (120)
248 PF02353 CMAS: Mycolic acid cy 26.2 1.2E+02 0.0025 30.1 5.2 44 212-257 58-102 (273)
249 KOG1541|consensus 24.8 2.7E+02 0.0058 27.1 6.9 40 217-258 51-90 (270)
250 PF05891 Methyltransf_PK: AdoM 22.9 2E+02 0.0042 27.7 5.7 134 216-379 55-202 (218)
251 PF05724 TPMT: Thiopurine S-me 22.6 1.4E+02 0.0031 28.4 4.8 41 215-257 36-76 (218)
252 COG1707 ACT domain-containing 22.1 1.1E+02 0.0025 28.0 3.7 36 357-397 54-91 (218)
253 PRK13562 acetolactate synthase 20.4 1.4E+02 0.003 24.2 3.5 45 341-397 6-51 (84)
254 cd05834 HDGF_related The PWWP 20.2 1.5E+02 0.0032 23.7 3.7 30 68-103 15-44 (83)
No 1
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=100.00 E-value=8.7e-46 Score=375.53 Aligned_cols=168 Identities=35% Similarity=0.711 Sum_probs=145.7
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCccc
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVE 297 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~vd 297 (487)
++++||||||||+++||++||+ +++||+|+|+.|++||++||| .+..+||.++... .+|. ++|
T Consensus 1 ~~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~~--~~~~~Di~~~~~~------------~l~~--~~D 63 (335)
T PF00145_consen 1 MKVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANFP--EVICGDITEIDPS------------DLPK--DVD 63 (335)
T ss_dssp EEEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHHT--EEEESHGGGCHHH------------HHHH--T-S
T ss_pred CcEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhccc--ccccccccccccc------------cccc--cce
Confidence 5899999999999999999997 999999999999999999999 7888898876321 2342 599
Q ss_pred EEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCCeeEEEE
Q psy13720 298 MLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGT 377 (487)
Q Consensus 298 ~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~~~~ 377 (487)
||+||||||+||.+|+. +..+|.|+.|+++++++|+.++|++|+||||+||++.+++..++.+++.|+++||++.+.+
T Consensus 64 ~l~ggpPCQ~fS~ag~~--~~~~d~r~~L~~~~~~~v~~~~Pk~~~~ENV~~l~~~~~~~~~~~i~~~l~~lGY~v~~~v 141 (335)
T PF00145_consen 64 LLIGGPPCQGFSIAGKR--KGFDDPRNSLFFEFLRIVKELKPKYFLLENVPGLLSSKNGEVFKEILEELEELGYNVQWRV 141 (335)
T ss_dssp EEEEE---TTTSTTSTH--HCCCCHTTSHHHHHHHHHHHHS-SEEEEEEEGGGGTGGGHHHHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeccCCceEeccccc--cccccccchhhHHHHHHHhhccceEEEecccceeeccccccccccccccccccceeehhcc
Confidence 99999999999999963 4567899999999999999999999999999999999888999999999999999999999
Q ss_pred EeccCCCCCCcccEEEEEEEcCCCCCC
Q psy13720 378 LQAGHFGVSQTRRRAIVLAAAPGEVLP 404 (487)
Q Consensus 378 l~a~~yGvPQ~R~R~fiia~~~~~~~p 404 (487)
|||++|||||+|+|+||||++++...+
T Consensus 142 lna~~yGvPQ~R~R~fivg~r~~~~~~ 168 (335)
T PF00145_consen 142 LNAADYGVPQNRERVFIVGIRKDLPLP 168 (335)
T ss_dssp EEGGGGTSSBE-EEEEEEEEEGGG--T
T ss_pred ccHhhCCCCCceeeEEEEEECCCCCcc
Confidence 999999999999999999999986654
No 2
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.3e-44 Score=360.74 Aligned_cols=173 Identities=28% Similarity=0.556 Sum_probs=153.9
Q ss_pred EeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCcccEE
Q psy13720 220 CLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEML 299 (487)
Q Consensus 220 ~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~vd~i 299 (487)
++||||||||+++||++||+ ++++|+|+|+.|++||++|||+ .++.+||.++.. ..+| ++|+|
T Consensus 1 vidLF~G~GG~~~Gl~~aG~-~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~------------~~~~---~~dvl 63 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGF-KCVFASEIDKYAQKTYEANFGN-KVPFGDITKISP------------SDIP---DFDIL 63 (315)
T ss_pred CEEEecCccHHHHHHHHcCC-eEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhh------------hhCC---CcCEE
Confidence 58999999999999999998 9999999999999999999998 677789887621 1233 68999
Q ss_pred EccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCCeeEEEEEe
Q psy13720 300 CGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQ 379 (487)
Q Consensus 300 ~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~~~~l~ 379 (487)
+||||||+||.+|+. ++.+|.|+.|+.+++++|+..+|++|+||||+||++.+++..++.+++.|+++||++.+.+||
T Consensus 64 ~gg~PCq~fS~ag~~--~~~~d~r~~L~~~~~r~i~~~~P~~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY~v~~~~l~ 141 (315)
T TIGR00675 64 LGGFPCQPFSIAGKR--KGFEDTRGTLFFEIVRILKEKKPKFFLLENVKGLVSHDKGRTFKVIIETLEELGYKVYYKVLN 141 (315)
T ss_pred EecCCCcccchhccc--CCCCCchhhHHHHHHHHHhhcCCCEEEeeccHHHHhcccchHHHHHHHHHHhCCCEEEEEEEc
Confidence 999999999999874 345688999999999999999999999999999999888889999999999999999999999
Q ss_pred ccCCCCCCcccEEEEEEEc-CCCC-CCCCCCCCc
Q psy13720 380 AGHFGVSQTRRRAIVLAAA-PGEV-LPKYPEPWT 411 (487)
Q Consensus 380 a~~yGvPQ~R~R~fiia~~-~~~~-~p~~P~pth 411 (487)
|++||+||+|+|+|+||++ .+.. ...+|.|+|
T Consensus 142 a~dyGvPQ~R~R~f~ia~r~~~~~~~~~~p~~~~ 175 (315)
T TIGR00675 142 AKDFGVPQNRERIYIVGFRDFDDKLNFEFPKPIY 175 (315)
T ss_pred HHHCCCCCCccEEEEEEEeCCCcCcCCCCCCCcc
Confidence 9999999999999999998 4432 235777766
No 3
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=100.00 E-value=4.2e-43 Score=347.84 Aligned_cols=169 Identities=30% Similarity=0.575 Sum_probs=152.3
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCccc
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVE 297 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~vd 297 (487)
++++|||||+||+++||+++|+ ++++|+|+|+.|++||++|||++ ++++||.++.. ..+ .+++|
T Consensus 1 ~~v~dLFsG~Gg~~~gl~~~G~-~~v~a~e~~~~a~~~~~~N~~~~-~~~~Di~~~~~------------~~~--~~~~D 64 (275)
T cd00315 1 LRVIDLFAGIGGFRLGLEKAGF-EIVAANEIDKSAAETYEANFPNK-LIEGDITKIDE------------KDF--IPDID 64 (275)
T ss_pred CcEEEEccCcchHHHHHHHcCC-EEEEEEeCCHHHHHHHHHhCCCC-CccCccccCch------------hhc--CCCCC
Confidence 5799999999999999999997 89999999999999999999875 67788876521 111 24799
Q ss_pred EEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCCeeEEEE
Q psy13720 298 MLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGT 377 (487)
Q Consensus 298 ~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~~~~ 377 (487)
+|+||||||+||.+|+. +..+|+|+.|+.+++++|+..+|++|+||||+||++.+++..++.+++.|+++||++.+.+
T Consensus 65 ~l~~gpPCq~fS~ag~~--~~~~d~r~~L~~~~~~~i~~~~P~~~v~ENV~g~~~~~~~~~~~~i~~~l~~~GY~~~~~~ 142 (275)
T cd00315 65 LLTGGFPCQPFSIAGKR--KGFEDTRGTLFFEIIRILKEKKPKYFLLENVKGLLTHDNGNTLKVILNTLEELGYNVYWKL 142 (275)
T ss_pred EEEeCCCChhhhHHhhc--CCCCCchHHHHHHHHHHHHhcCCCEEEEEcCcchhccCchHHHHHHHHHHHhCCcEEEEEE
Confidence 99999999999999873 4457889999999999999999999999999999998888899999999999999999999
Q ss_pred EeccCCCCCCcccEEEEEEEcCCCCCC
Q psy13720 378 LQAGHFGVSQTRRRAIVLAAAPGEVLP 404 (487)
Q Consensus 378 l~a~~yGvPQ~R~R~fiia~~~~~~~p 404 (487)
|||++||+||+|+|+|+||++++...+
T Consensus 143 l~a~~~GvPQ~R~R~~~ia~~~~~~~~ 169 (275)
T cd00315 143 LNASDYGVPQNRERVFIIGIRKDLILN 169 (275)
T ss_pred EEHHHcCCCCCCcEEEEEEEeCCCCcc
Confidence 999999999999999999999886654
No 4
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-43 Score=359.76 Aligned_cols=168 Identities=30% Similarity=0.627 Sum_probs=152.7
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 295 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~ 295 (487)
.+++++||||||||+++||++||| ++++|+|+|+.|++||++||+...+...||..+.. ..++.. +
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf-~~~~a~Eid~~a~~ty~~n~~~~~~~~~di~~~~~------------~~~~~~-~ 67 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGF-EIVFANEIDPPAVATYKANFPHGDIILGDIKELDG------------EALRKS-D 67 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCC-eEEEEEecCHHHHHHHHHhCCCCceeechHhhcCh------------hhcccc-C
Confidence 578999999999999999999997 99999999999999999999987777788876531 122211 7
Q ss_pred ccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCCeeEE
Q psy13720 296 VEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 375 (487)
Q Consensus 296 vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~~ 375 (487)
+|+|+||||||+||.||+. +..+|+|++|+++++|+|+.++|++||||||+||++. ++..++.|++.|+++||.+.+
T Consensus 68 ~DvligGpPCQ~FS~aG~r--~~~~D~R~~L~~~~~r~I~~~~P~~fv~ENV~gl~~~-~~~~~~~i~~~L~~~GY~~~~ 144 (328)
T COG0270 68 VDVLIGGPPCQDFSIAGKR--RGYDDPRGSLFLEFIRLIEQLRPKFFVLENVKGLLSS-KGQTFDEIKKELEELGYGVEF 144 (328)
T ss_pred CCEEEeCCCCcchhhcCcc--cCCcCccceeeHHHHHHHHhhCCCEEEEecCchHHhc-CchHHHHHHHHHHHcCCcchH
Confidence 9999999999999999974 5688999999999999999999999999999999998 778999999999999999999
Q ss_pred EEEeccCCCCCCcccEEEEEEEcCC
Q psy13720 376 GTLQAGHFGVSQTRRRAIVLAAAPG 400 (487)
Q Consensus 376 ~~l~a~~yGvPQ~R~R~fiia~~~~ 400 (487)
.+|||++|||||+|+|+||||.+++
T Consensus 145 ~ilna~dyGvPQ~ReRvfiig~~~~ 169 (328)
T COG0270 145 NILNAADYGVPQSRERVFIVGFRRD 169 (328)
T ss_pred heeeHHhcCCCCCccEEEEEEecCc
Confidence 9999999999999999999998863
No 5
>PRK10458 DNA cytosine methylase; Provisional
Probab=100.00 E-value=1.1e-40 Score=348.79 Aligned_cols=183 Identities=26% Similarity=0.483 Sum_probs=153.1
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC---CCCceeccchHHHHHHh----hchhhhccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---PGCTVFVDDCNKILQRV----IDNEVCDDKKQ 288 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~---p~~~~~~~di~~~~~~~----~~~~~~~~~~~ 288 (487)
.+++++||||||||+++||+++|+ ++++|+|+|+.|++||++|| |++.++++||.++.... ...++......
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~-~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~ 165 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGG-QCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQ 165 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCC-EEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhc
Confidence 589999999999999999999998 89999999999999999998 56778889998763110 00111111112
Q ss_pred cCCCCCcccEEEccCCCcCcccCCccCCc------c-cccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHH
Q psy13720 289 KLPRKGEVEMLCGGPPCQGFSGMNRFNQR------Q-YSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKM 361 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPCq~fS~~~~~~~~------~-~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~ 361 (487)
.+| ++|+|+||||||+||.+|+.++. + ..|.|+.|+.+++|+|+..+|++||||||+||++.+++..++.
T Consensus 166 ~~p---~~DvL~gGpPCQ~FS~AG~~k~~~~gr~~g~~~d~rg~Lf~~~~rii~~~kPk~fvlENV~gl~s~~~g~~f~~ 242 (467)
T PRK10458 166 HIP---DHDVLLAGFPCQPFSLAGVSKKNSLGRAHGFECETQGTLFFDVARIIDAKRPAIFVLENVKNLKSHDKGKTFRI 242 (467)
T ss_pred cCC---CCCEEEEcCCCCccchhcccccccccccccccCCccccHHHHHHHHHHHhCCCEEEEeCcHhhhcccccHHHHH
Confidence 233 79999999999999999853221 1 1377999999999999999999999999999999988999999
Q ss_pred HHHHHHhCCCeeE---------EEEEeccCCCCCCcccEEEEEEEcCCCCC
Q psy13720 362 TMRCLTQIGYQCT---------FGTLQAGHFGVSQTRRRAIVLAAAPGEVL 403 (487)
Q Consensus 362 i~~~l~~~GY~~~---------~~~l~a~~yGvPQ~R~R~fiia~~~~~~~ 403 (487)
|++.|.++||.+. +.+|||.+| |||+|+|+||||++++..+
T Consensus 243 i~~~L~~lGY~v~~~~~~g~~~~~vlna~~f-VPQ~R~RvfiVg~r~~~~~ 292 (467)
T PRK10458 243 IMQTLDELGYDVADAEDNGPDDPKIIDGKHF-LPQHRERIVLVGFRRDLNL 292 (467)
T ss_pred HHHHHHHcCCeEEeccccCcccceEeehhhC-CCccCcEEEEEEEeCCccc
Confidence 9999999999995 689999999 9999999999999987543
No 6
>cd04708 BAH_plantDCM_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=3.9e-40 Score=303.99 Aligned_cols=196 Identities=26% Similarity=0.465 Sum_probs=154.9
Q ss_pred EEEcCeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCC
Q psy13720 6 VSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGK 85 (487)
Q Consensus 6 v~~~g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~ 85 (487)
++++|++|+|||+|||.|+.|+++. |+.++|++|+|... .||+||||.+|++.++.
T Consensus 1 f~~~Gv~Y~vgD~VYv~p~~f~~~~-----------------------~~~~~~~~G~N~~~-~p~~I~qI~ei~~~k~~ 56 (202)
T cd04708 1 FVYDGVTYSVGDFLYVSPDAFAEEE-----------------------RERATFKAGRNVGL-KAFVVCQVLEIVVEKES 56 (202)
T ss_pred CcCCCEEEecCCeEEECcccccccc-----------------------cccccccccccCCC-CCcEEEEEEEEEecccC
Confidence 4689999999999999999987763 78889999999865 69999999999998775
Q ss_pred CCCCCCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCCcccccccccCCCCeeEEE
Q psy13720 86 KNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFN 165 (487)
Q Consensus 86 ~~~~~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy~~ 165 (487)
...+...++|+|||||||+||.. ...+++|.||||||++.+++|+++|.|||.|++..++..+. .|. ..++.|||+
T Consensus 57 ~~~~~~~~~vrVrwFYRPEdt~~--~~~y~sd~rely~Sde~~~~~~~~I~GKC~V~~~~d~~~~~-~~~-~~~~~Ffc~ 132 (202)
T cd04708 57 KQADVASTQVKVRRFYRPEDVSP--EKAYASDIREVYYSEDTLTVPVEAVEGKCEVRKKSDLPDSD-APV-IFEHVFFCE 132 (202)
T ss_pred CCCCCcceEEEEEEEechhhcCc--ccceecCceeEEEeccceeechhHcceEEEEEecCcchhhh-ccc-cCCCceEEE
Confidence 44456789999999999999943 44678999999999999999999999999999999887754 454 348999999
Q ss_pred EeecCCCCccccCchhhh----hcccccCCCCCCCCCC--CCCCcccccCCCCCcCCCCeEeecccCchHH
Q psy13720 166 EAYNSKTEEFTNLPTEAL----FLGSVSKGKGKGKNQT--NKPEEKDEITEWPSIARPLRCLEVFAGAGGL 230 (487)
Q Consensus 166 ~~Yd~~~~~f~~~P~~~~----~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~ldLFsG~Gg~ 230 (487)
..||+.+++|+.||.+++ .++....+++|.|+++ ....+.+.....++. .+|.+||+|||||||
T Consensus 133 ~~Yd~~tg~f~~lP~~~~~~~~~~~~~~~~~~k~kgkgk~~~~~~~~~~~~~~~~-~~LaTLDIFAGCGGL 202 (202)
T cd04708 133 LLYDPAKGSLKQLPPNIKEEAYSTGASDSALRKRKGKGKGDSESDSEAPVKAPKE-NRLATLDIFAGCGGL 202 (202)
T ss_pred EEEcCCCCccCCCCchhccccccccccccccccCCCCCcCccccccccccccccc-cccceeeeecccCCC
Confidence 999999999999999988 3333222222222222 222222221223333 899999999999996
No 7
>cd04711 BAH_Dnmt1_II BAH, or Bromo Adjacent Homology domain, second copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=100.00 E-value=5.2e-38 Score=269.26 Aligned_cols=136 Identities=53% Similarity=0.901 Sum_probs=125.7
Q ss_pred CCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCC-CCCCCceEEEEEeeeccccCCCCccccccCCCceEEe
Q psy13720 45 DEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKK-NVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYW 123 (487)
Q Consensus 45 de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~-~~~~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~ 123 (487)
||++|||+|||.++||+|||.+.++||+||||++|...++.. ......++|+|+|||||+||+.+..+.+++|.|||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~d~~ePy~VgrI~eI~~~k~~~~k~~~~~ikvrV~~fYRPEdi~~g~~~ayhsDirevy~ 80 (137)
T cd04711 1 DEDLYPEYYRKSSDYIKGSNLDAPEPFRIGRIKEIFCAKRSNGKPNESDIKLRINKFYRPENTHKGFKATYHADINMLYW 80 (137)
T ss_pred CcccchHHhhccccccccccCCCCCCcEEEEEEEEecCCCCCCCCCccceEEEEEEEecccccccccccccccceeeEEe
Confidence 789999999999999999999999999999999999887643 2344578999999999999987777778999999999
Q ss_pred cccceeecccceeeeeEEEeecCCcccccccccCCCCeeEEEEeecCCCCccccCch
Q psy13720 124 SDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPT 180 (487)
Q Consensus 124 S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy~~~~Yd~~~~~f~~~P~ 180 (487)
|+|.+++|+++|.|||.|++..++..+.++|...++|+|||++.||..+++|++||.
T Consensus 81 Sd~~~~~~~~~I~GKC~V~~~~di~~s~~~y~~~gpd~Fyf~~~Y~a~t~~F~d~p~ 137 (137)
T cd04711 81 SDEEATVDFSAVQGRCTVEYGEDLPESVQEYSGGGPDRFYFLEAYNAKTKSFEDPPN 137 (137)
T ss_pred ecceeecChhhccceEEEEeccccchhHHHHhcCCCcceEEhhhhccccCcccCCCC
Confidence 999999999999999999999999988889987889999999999999999999984
No 8
>cd04710 BAH_fungalPHD BAH, or Bromo Adjacent Homology domain, as present in fungal proteins containing PHD domains. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.96 E-value=1.6e-28 Score=216.04 Aligned_cols=125 Identities=25% Similarity=0.437 Sum_probs=106.6
Q ss_pred EEEEcCeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCC
Q psy13720 5 CVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKG 84 (487)
Q Consensus 5 ~v~~~g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~ 84 (487)
.+..+|..|++||+|||.|++ +++|||||||++|+..++
T Consensus 4 ~~~~~g~~~~vgD~Vyv~~~~-----------------------------------------~~ePyyIgrI~e~~~~~~ 42 (135)
T cd04710 4 LVLKNGELLKVNDHIYMSSEP-----------------------------------------PGEPYYIGRIMEFVPKHE 42 (135)
T ss_pred EEccCCeEEeCCCEEEEecCC-----------------------------------------CCCCCEEEEEEEEEecCC
Confidence 467899999999999999987 689999999999998764
Q ss_pred CCCC------CCCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCCcccccccccCC
Q psy13720 85 KKNV------SASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRG 158 (487)
Q Consensus 85 ~~~~------~~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~ 158 (487)
..+. +....+|+|+|||||+||.... .+|+||||+|+|+|++|+++|+|||.|++.+++.+ .++|.. .
T Consensus 43 ~~~~~~~~~~~~~~~~vrV~wfYRp~Di~~~~----~~d~relf~S~h~d~~p~~si~gKC~V~~~~di~~-l~~~~~-~ 116 (135)
T cd04710 43 FPSGIHARVFPASYFQVRLNWYYRPRDISRRV----VADSRLLYASMHSDICPIGSVRGKCTVRHRDQIPD-LEEYKK-R 116 (135)
T ss_pred CCccccccccCCCcEEEEEEEEeCHHHcCCcc----cCCceEEEEEeeEeeechHHEEeEEEEEEecccch-hhhhcc-C
Confidence 3221 3566899999999999984322 48999999999999999999999999999998865 456774 5
Q ss_pred CCeeEEEEeecCCCCccc
Q psy13720 159 PHRFYFNEAYNSKTEEFT 176 (487)
Q Consensus 159 ~d~Fy~~~~Yd~~~~~f~ 176 (487)
+++|||...||+.+++|-
T Consensus 117 ~~~Fyf~~lyD~~~~r~~ 134 (135)
T cd04710 117 PNHFYFDQLFDRYILRYY 134 (135)
T ss_pred CCEEEEEeeeCcchhhcc
Confidence 899999999999888763
No 9
>cd04716 BAH_plantDCM_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases (DCM) from plants. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.96 E-value=1.7e-28 Score=211.94 Aligned_cols=122 Identities=18% Similarity=0.257 Sum_probs=106.3
Q ss_pred CeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCCCCC
Q psy13720 10 GEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVS 89 (487)
Q Consensus 10 g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~~~~ 89 (487)
|..|++||+|||.++. ++|+|||||++||++.+
T Consensus 1 g~~~~lgD~V~v~~~~------------------------------------------~~~~yi~rI~~i~e~~~----- 33 (122)
T cd04716 1 GITYNLGDDAYVQGGE------------------------------------------GEEPFICKITEFFEGTD----- 33 (122)
T ss_pred CcEEEcCCEEEEECCC------------------------------------------CCCCEEEEEEEEEEcCC-----
Confidence 6789999999998765 47789999999999877
Q ss_pred CCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCCcccccccccCCCCeeEEEEeec
Q psy13720 90 ASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYN 169 (487)
Q Consensus 90 ~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy~~~~Yd 169 (487)
+..+|+|||||||+||++++. ...+|+||||+|+++|++|+++|.|||.|++.++....+..-...++++|||++.|+
T Consensus 34 -g~~~~~v~WyyRpeet~~~r~-~~~~~~rEvFlS~~~D~~pl~~I~~Kc~V~~~~~~~~~~~~~~~~~~~df~c~~~Y~ 111 (122)
T cd04716 34 -GKTYFTAQWFYRAEDTVIERQ-ATNHDKKRVFYSEIKNDNPLDCLISKVKILQVPPNVGTKRKKPNSEKCDYYYDMEYC 111 (122)
T ss_pred -CceEEEEEEEEcHHHhccccc-cccCCCceEEEecccCccchhheeeeeEEEEeCCCCCcccccccCCCceEEEeeEec
Confidence 778999999999999987653 346899999999999999999999999999999877654333456789999999999
Q ss_pred CCCCccccCch
Q psy13720 170 SKTEEFTNLPT 180 (487)
Q Consensus 170 ~~~~~f~~~P~ 180 (487)
....+|+.+|.
T Consensus 112 ~~~~tF~~~~~ 122 (122)
T cd04716 112 VPYSTFQTLRN 122 (122)
T ss_pred cchhheEeCCC
Confidence 99999998873
No 10
>cd04709 BAH_MTA BAH, or Bromo Adjacent Homology domain, as present in MTA1 and similar proteins. The Metastasis-associated protein MTA1 is part of the NURD (nucleosome remodeling and deacetylating) complex and plays a role in cellular transformation and metastasis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=7.5e-26 Score=204.72 Aligned_cols=111 Identities=19% Similarity=0.284 Sum_probs=94.3
Q ss_pred CCCceEEEEEEEEecCCCCCCCCCceEEEEEeeeccccCCCCc--------------------cccccCCCceEEecccc
Q psy13720 68 PAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSV--------------------EFTYQLDLNKLYWSDEE 127 (487)
Q Consensus 68 ~~P~~IgrI~~i~~~~~~~~~~~~~~~v~v~wfyRp~dt~~~~--------------------~~~~~~d~reLF~S~~~ 127 (487)
++||+||||++||++++ +.++++|+|||||+||.... ...+..+.||||+|++.
T Consensus 17 ~~Py~I~rI~e~~~~~~------~~~~vkV~wfYRp~DI~~~~~~l~~~~r~~~~~~~~~~~~~~~~~~~~rELF~S~~~ 90 (164)
T cd04709 17 NNPYLIRRIEELNKTAR------GHVEAKVVCYYRRRDIPDSLYQLADQHRRELEEKSDDLTPKQRHQLRHRELFLSRQV 90 (164)
T ss_pred CCCCEEEEEEEEEeCCC------CCEEEEEEEEEChhHccchhhhhcccccccccccccccchhhhhccCcceeEEeccc
Confidence 67899999999999877 78999999999999984321 12344689999999999
Q ss_pred eeecccceeeeeEEEeecCCcccccccccCCCCeeEEEEeecCCCCccccCchhhhhcc
Q psy13720 128 EQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEALFLG 186 (487)
Q Consensus 128 d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy~~~~Yd~~~~~f~~~P~~~~~~~ 186 (487)
+++|+++|+|||.|++++++... ..|. ..+|.|||...||+.+++|..-.+++|..+
T Consensus 91 d~~p~~~IrGKC~V~~~~d~~~l-~~~~-~~~d~Ff~~~~YDP~~k~l~~~~geirvg~ 147 (164)
T cd04709 91 ETLPATHIRGKCSVTLLNDTESA-RSYL-AREDTFFYSLVYDPEQKTLLADQGEIRVGP 147 (164)
T ss_pred ccccHHHeeeeEEEEEehhhhhh-hhcc-CCCCEEEEEEEECCCCCeecccceeEEecC
Confidence 99999999999999999998774 4665 467999999999999999988778887643
No 11
>cd04760 BAH_Dnmt1_I BAH, or Bromo Adjacent Homology domain, first copy present in DNA (Cytosine-5)-methyltransferases from Bilateria, Dnmt1 and similar proteins. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.93 E-value=1.4e-25 Score=192.33 Aligned_cols=116 Identities=23% Similarity=0.376 Sum_probs=99.0
Q ss_pred CeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCCCCC
Q psy13720 10 GEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVS 89 (487)
Q Consensus 10 g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~~~~ 89 (487)
|++|+|||||+|.+++ +.+|.|||+|++||++.+
T Consensus 1 g~~i~vGD~V~v~~~~-----------------------------------------~~~p~~I~rV~~mfe~~~----- 34 (124)
T cd04760 1 GEELEAGDCVSVKPDD-----------------------------------------PTKPLYIARVTYMWKDSI----- 34 (124)
T ss_pred CCEEecCCEEEEecCC-----------------------------------------CCCCcEEEEEhhheecCC-----
Confidence 6889999999999876 578889999999999987
Q ss_pred CCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCCcccc--------cccccCCCCe
Q psy13720 90 ASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQIST--------DRWSSRGPHR 161 (487)
Q Consensus 90 ~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~--------~~~~~~~~d~ 161 (487)
+..+||++||||++||+++.. ++++|||+|++|+++++++|.+||+|....+..++. ..-...+.++
T Consensus 35 -g~k~~h~rWf~Rg~dTVlG~~----~~~kEvFlsd~c~d~~l~~I~~Kv~V~~~~p~~~w~~~~g~~~~~~~~~ddg~t 109 (124)
T cd04760 35 -GGKMFHAHWFCRGSDTVLGET----SDPLELFLVDECEDMALSSIHGKVNVIYKAPSENWSMEGGMDEEDEIFEDDGKT 109 (124)
T ss_pred -CCcEEEEEEEEECCccccccc----CCCcEEEeecccCCcchHHheeeeEEEEeCCCcchhhhcCCCCccccccCCCCe
Confidence 788999999999999998875 999999999999999999999999999998542211 1112234578
Q ss_pred eEEEEeecCCCCccc
Q psy13720 162 FYFNEAYNSKTEEFT 176 (487)
Q Consensus 162 Fy~~~~Yd~~~~~f~ 176 (487)
|||+++||+..++|+
T Consensus 110 ffyq~~yd~~~arf~ 124 (124)
T cd04760 110 FFYQKWYDPECARFE 124 (124)
T ss_pred EEEEEeeChhhhccC
Confidence 999999999888774
No 12
>cd04713 BAH_plant_3 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.92 E-value=7.4e-25 Score=196.28 Aligned_cols=126 Identities=22% Similarity=0.364 Sum_probs=104.7
Q ss_pred eEeEEEEcCeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEe
Q psy13720 2 YYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFK 81 (487)
Q Consensus 2 ~y~~v~~~g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~ 81 (487)
.|++++++|++|+|||+|||.|+. +.++|||+|++||+
T Consensus 10 ~y~s~~~dg~~y~vgD~Vlv~~~~------------------------------------------~~~pyI~~I~~i~~ 47 (146)
T cd04713 10 HYTSFEKDGNKYRLEDCVLLVPED------------------------------------------DQKPYIAIIKDIYK 47 (146)
T ss_pred eeeeEEECCEEEECCCEEEEeCCC------------------------------------------CCCCEEEEEEEEEE
Confidence 699999999999999999998766 35569999999999
Q ss_pred cCCCCCCCCCceEEEEEeeeccccCCCCcccc-ccCCCceEEecccceeecccceeeeeEEEeecCCcccccccccCCCC
Q psy13720 82 KKGKKNVSASDVFLTVKKFYRPENTHRSVEFT-YQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPH 160 (487)
Q Consensus 82 ~~~~~~~~~~~~~v~v~wfyRp~dt~~~~~~~-~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d 160 (487)
..+ +.++|+|+|||||+||....... ..+++||||+|++.+.+|+++|.|||.|++.++....+. ....+
T Consensus 48 ~~~------~~~~v~V~WFyRpeEi~~~~~~~~~~~~~~ElF~S~~~d~~~~~~I~gkc~V~~~~~~~~~~~---~~~~~ 118 (146)
T cd04713 48 QEE------GSLKLEVQWLYRPEEIEKKKGGNWKAEDPRELFYSFHRDEVPAESVLHPCKVAFVPKGKQIPL---RKGHS 118 (146)
T ss_pred cCC------CCEEEEEEeeECHHHhccccccccccCCCCeEEEeCCCCcCCHHHCcceeEEEECCccccCCc---cCCCC
Confidence 876 78999999999999996433221 235899999999999999999999999998876543331 12468
Q ss_pred eeEEEEeecCCCCccccC
Q psy13720 161 RFYFNEAYNSKTEEFTNL 178 (487)
Q Consensus 161 ~Fy~~~~Yd~~~~~f~~~ 178 (487)
.|||+..||...++|..+
T Consensus 119 ~F~cr~~yD~~~~~~~~~ 136 (146)
T cd04713 119 GFIVRRVYDNVNKKLWKL 136 (146)
T ss_pred eEEEEEEEcCCCCcEeec
Confidence 899999999998877654
No 13
>PF01426 BAH: BAH domain; InterPro: IPR001025 The BAH (bromo-adjacent homology) family contains proteins such as eukaryotic DNA (cytosine-5) methyltransferases IPR001525 from INTERPRO, the origin recognition complex 1 (Orc1) proteins, as well as several proteins involved in transcriptional regulation. The BAH domain appears to act as a protein-protein interaction module specialised in gene silencing, as suggested for example by its interaction within yeast Orc1p with the silent information regulator Sir1p. The BAH module might therefore play an important role by linking DNA methylation, replication and transcriptional regulation [].; GO: 0003677 DNA binding; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 3SWR_A 3PTA_A 1M4Z_A 1ZBX_A ....
Probab=99.92 E-value=6.4e-25 Score=190.44 Aligned_cols=119 Identities=28% Similarity=0.545 Sum_probs=98.3
Q ss_pred eEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCCCCCC
Q psy13720 11 EQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSA 90 (487)
Q Consensus 11 ~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~~~~~ 90 (487)
++|++||+|||.++. ..+|++||+|.+||++.+. .
T Consensus 1 ~~~~vGD~V~v~~~~-----------------------------------------~~~~~~v~~I~~i~~~~~~----~ 35 (119)
T PF01426_consen 1 VTYKVGDFVYVKPDD-----------------------------------------PPEPPYVARIEEIWEDKDG----N 35 (119)
T ss_dssp EEEETTSEEEEECTS-----------------------------------------TTSEEEEEEEEEEEEETTT----S
T ss_pred CEEeCCCEEEEeCCC-----------------------------------------CCCCCEEEEEEEEEcCCCC----C
Confidence 589999999998776 5788999999999998761 1
Q ss_pred CceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCCcccccccccCCCCeeEEEEeecC
Q psy13720 91 SDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNS 170 (487)
Q Consensus 91 ~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy~~~~Yd~ 170 (487)
...+++|+|||||+||.... ..++||||+|++++++|+++|.|||.|++.++.......... .++.|||++.||+
T Consensus 36 ~~~~~~v~Wf~rp~d~~~~~----~~~~~Elf~s~~~~~~~~~~I~gkc~V~~~~~~~~~~~~~~~-~~~~F~cr~~yd~ 110 (119)
T PF01426_consen 36 KEKMVKVRWFYRPEDTSLGK----TFSPRELFLSDHCDDIPVESIRGKCNVLHLEDYEQARPYGKE-EPDTFFCRYAYDP 110 (119)
T ss_dssp EEEEEEEEEEEEGGGSTTGG----HSCTTEEEEEEEEEEEEGGGEEEEEEEEEHHHHTTGCCHCHH-TTTEEEEEEEEET
T ss_pred EEEEEEEEEeECcccccccc----cCCCCEEEEECcEeEEehhhEEeeeEEEECCccccccccccC-CCCEEEEEEEEeC
Confidence 24999999999999993222 366699999999999999999999999999876553322213 6899999999999
Q ss_pred CCCccccCc
Q psy13720 171 KTEEFTNLP 179 (487)
Q Consensus 171 ~~~~f~~~P 179 (487)
.+++|..+|
T Consensus 111 ~~~~f~~~~ 119 (119)
T PF01426_consen 111 QKKRFKKLP 119 (119)
T ss_dssp TTTEEEE-S
T ss_pred CcCEEeCCC
Confidence 999998775
No 14
>cd04714 BAH_BAHCC1 BAH, or Bromo Adjacent Homology domain, as present in mammalian BAHCC1 and similar proteins. BAHCC1 stands for BAH domain and coiled-coil containing 1. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.91 E-value=9.2e-25 Score=189.80 Aligned_cols=116 Identities=21% Similarity=0.376 Sum_probs=97.1
Q ss_pred CeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCCCCC
Q psy13720 10 GEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVS 89 (487)
Q Consensus 10 g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~~~~ 89 (487)
|+.|+|||+|||.++. .+.++|||+|++||++.+
T Consensus 1 ~~~~~vGD~V~v~~~~-----------------------------------------~~~~pyIgrI~~i~e~~~----- 34 (121)
T cd04714 1 KEIIRVGDCVLFKSPG-----------------------------------------RPSLPYVARIESLWEDPE----- 34 (121)
T ss_pred CCEEEcCCEEEEeCCC-----------------------------------------CCCCCEEEEEEEEEEcCC-----
Confidence 6889999999998765 346679999999999876
Q ss_pred CCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCCccccc--ccccCCCCeeEEEEe
Q psy13720 90 ASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTD--RWSSRGPHRFYFNEA 167 (487)
Q Consensus 90 ~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~--~~~~~~~d~Fy~~~~ 167 (487)
+.++|+|+|||||+||.++... .++++|||+|++.|++|+++|.|||.|++.+++.+... +....+.+.|+|++.
T Consensus 35 -g~~~~~v~WfyrPeEt~~~~~~--~~~~~EvF~S~~~d~~~~~~I~gkc~V~~~~ey~~~~~~~~~~~~~~d~~~Ce~~ 111 (121)
T cd04714 35 -GNMVVRVKWYYRPEETKGGRKP--NHGEKELFASDHQDENSVQTIEHKCYVLTFAEYERLARVKKKPQDGVDFYYCAGT 111 (121)
T ss_pred -CCEEEEEEEEEcHHHccCcccc--cCCCCceEecCCcccccHHHhCcccEEEehhHheecccccCCCCcCCCEEEEecc
Confidence 7789999999999999776543 58999999999999999999999999999998765321 112246799999999
Q ss_pred ecCCCCc
Q psy13720 168 YNSKTEE 174 (487)
Q Consensus 168 Yd~~~~~ 174 (487)
||+...-
T Consensus 112 yn~~~~~ 118 (121)
T cd04714 112 YNPDTGM 118 (121)
T ss_pred CCCCcCc
Confidence 9998653
No 15
>smart00439 BAH Bromo adjacent homology domain.
Probab=99.91 E-value=9.2e-24 Score=183.33 Aligned_cols=105 Identities=31% Similarity=0.529 Sum_probs=88.8
Q ss_pred CCCCceEEEEEEEEecCCCCCCCCCc-eEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeec
Q psy13720 67 TPAPFGIGYIVAIFKKKGKKNVSASD-VFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCED 145 (487)
Q Consensus 67 ~~~P~~IgrI~~i~~~~~~~~~~~~~-~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~ 145 (487)
..+|++||+|.+||++.+ +. .+++|+|||||+||.+...+ .+++||||+|++++++|+++|.|||.|++.+
T Consensus 15 ~~~~~~i~~I~~i~~~~~------~~~~~~~v~Wf~rp~e~~~~~~~--~~~~~Elf~s~~~~~i~~~~I~~kc~V~~~~ 86 (120)
T smart00439 15 ADEPYYIGRIEEIFETKK------NSEKMVRVRWFYRPEETVLEKAA--LFDKNEVFLSDEYDTVPLSDIIGKCNVLSKS 86 (120)
T ss_pred CCCCCEEEEEEEEEECCC------CCEEEEEEEEEEChhhccccccc--cCCCcceEEEccCccCChHHeeeEEEEEEcc
Confidence 457899999999999876 56 89999999999999765543 4789999999999999999999999999999
Q ss_pred CCcccccccccCCCCeeEEEEeecCCCCccccCc
Q psy13720 146 NLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLP 179 (487)
Q Consensus 146 ~~~~~~~~~~~~~~d~Fy~~~~Yd~~~~~f~~~P 179 (487)
+............++.|||++.||+.++.|..+|
T Consensus 87 ~~~~~~~~~~~~~~~~f~cr~~yd~~~~~f~~~~ 120 (120)
T smart00439 87 DYPGLRPEGKIGEPDVFFCESLYDPEKGAFKKLP 120 (120)
T ss_pred hhcccccccCCCCCCeEEEEEEEccccCcccCCC
Confidence 7765443333235799999999999999998765
No 16
>cd04712 BAH_DCM_I BAH, or Bromo Adjacent Homology domain, as present in DNA (Cytosine-5)-methyltransferases (DCM) 1. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the genome. These effects include transcriptional repression via inhibition of transcription factor binding, the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting, and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.90 E-value=1.3e-23 Score=184.12 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=102.7
Q ss_pred EcCeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCCC
Q psy13720 8 YEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKN 87 (487)
Q Consensus 8 ~~g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~~ 87 (487)
++|..|+|||+|+|.|++-+...+ .+.....|.+|++|.+||+..+
T Consensus 1 ~~~~~i~vGD~V~v~~d~~~~~~~-------------------------------~~~~~~~~~~i~~V~~~~e~~~--- 46 (130)
T cd04712 1 IHGLTIRVGDVVSVERDDADSTTK-------------------------------WNDDHRWLPLVQFVEYMKKGSD--- 46 (130)
T ss_pred CCCCEEeCCCEEEEcCCCCCcccc-------------------------------ccccccccceEEEEEEeeecCC---
Confidence 368899999999999987211100 0111356779999999999987
Q ss_pred CCCCceEEEEEeeeccccCCCCccccccCCCceEEecccceeeccc----ceeeeeEEEeecCCcccccccccCCCCeeE
Q psy13720 88 VSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLS----DVQGKCFVVCEDNLQISTDRWSSRGPHRFY 163 (487)
Q Consensus 88 ~~~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~----~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy 163 (487)
+..+||++|||||+||+++. .+++||||+|++|++++++ .|.|||.|++... +|....++.||
T Consensus 47 ---g~~~~h~~W~yrp~eTv~g~----~~~~~ElFLSd~c~~~~~~~~~~~I~~k~~V~~~~~------~~~~~~~~~F~ 113 (130)
T cd04712 47 ---GSKMFHGRWLYRGCDTVLGN----YANERELFLTNECTCLELDLLSTEIKGVHKVDWSGT------PWGKGLPEFFV 113 (130)
T ss_pred ---CceEEEEEEEEcchhccccc----cCCCceEEEeccccccccccccceeEEEEEEEEecC------cCCcCCCCEEE
Confidence 78999999999999999887 3999999999999999999 9999999999873 33345678888
Q ss_pred EEEeecCCCCccccCc
Q psy13720 164 FNEAYNSKTEEFTNLP 179 (487)
Q Consensus 164 ~~~~Yd~~~~~f~~~P 179 (487)
|++.|++..+.|..+|
T Consensus 114 r~syy~~e~~~F~~l~ 129 (130)
T cd04712 114 RQSYYWPERGAFTSLK 129 (130)
T ss_pred EEEEECccCCceEcCC
Confidence 8888898999999876
No 17
>cd04717 BAH_polybromo BAH, or Bromo Adjacent Homology domain, as present in polybromo and yeast RSC1/2. The human polybromo protein (BAF180) is a component of the SWI/SNF chromatin-remodeling complex PBAF. It is thought that polybromo participates in transcriptional regulation. Saccharomyces cerevisiae RSC1 and RSC2 are part of the 15-subunit nucleosome remodeling RSC complex. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.90 E-value=9.2e-24 Score=183.99 Aligned_cols=119 Identities=24% Similarity=0.372 Sum_probs=99.3
Q ss_pred CeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCCCCC
Q psy13720 10 GEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVS 89 (487)
Q Consensus 10 g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~~~~ 89 (487)
|..|++||||||.+++ .+.+.+||+|.+||++.+
T Consensus 1 g~~~~vGD~V~v~~~~-----------------------------------------~~~~~~i~~I~~i~~~~~----- 34 (121)
T cd04717 1 GLQYRVGDCVYVANPE-----------------------------------------DPSKPIIFRIERLWKDED----- 34 (121)
T ss_pred CCEEECCCEEEEeCCC-----------------------------------------CCCCCEEEEEeEEEECCC-----
Confidence 6789999999998765 235569999999999876
Q ss_pred CCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCCcccccccccCCCCeeEEEEeec
Q psy13720 90 ASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYN 169 (487)
Q Consensus 90 ~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy~~~~Yd 169 (487)
+..+|+++|||||+||.+... ..+.+||||+|++.+++|+++|.|||.|+..+++.+.. +-.....|.|+|++.||
T Consensus 35 -g~~~~~~~Wf~rP~et~~~~~--~~~~~~Evfls~~~d~~~~~~I~~kc~Vl~~~~y~~~~-p~~~~~~dvy~ce~~y~ 110 (121)
T cd04717 35 -GEKFFFGCWFYRPEETFHEPT--RKFYKNEVFKSPLYETVPVEEIVGKCAVMDVKDYIKGR-PTEISEEDVYVCESRYN 110 (121)
T ss_pred -CCEEEEEEEEeChHHccCCCc--cccccCceEEcCccccccHHHhcCeeEEEehHHHhcCC-CCCCCCCCEEEEeEEEC
Confidence 789999999999999976554 35789999999999999999999999999999776533 22223458899999999
Q ss_pred CCCCccccC
Q psy13720 170 SKTEEFTNL 178 (487)
Q Consensus 170 ~~~~~f~~~ 178 (487)
+..+.|..+
T Consensus 111 ~~~~~~~~~ 119 (121)
T cd04717 111 ESAKSFKKI 119 (121)
T ss_pred cccccEecc
Confidence 998887643
No 18
>cd04370 BAH BAH, or Bromo Adjacent Homology domain (also called ELM1 and BAM for Bromo Adjacent Motif). BAH domains have first been described as domains found in the polybromo protein and Yeast Rsc1/Rsc2 (Remodeling of the Structure of Chromatin). They also occur in mammalian DNA methyltransferases and the MTA1 subunits of histone deacetylase complexes. A BAH domain is also found in Yeast Sir3p and in the origin receptor complex protein 1 (Orc1p), where it was found to interact with the N-terminal lobe of the silence information regulator 1 protein (Sir1p), confirming the initial hypothesis that BAH plays a role in protein-protein interactions.
Probab=99.90 E-value=9.3e-24 Score=183.69 Aligned_cols=121 Identities=26% Similarity=0.427 Sum_probs=101.1
Q ss_pred CeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCCCCC
Q psy13720 10 GEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVS 89 (487)
Q Consensus 10 g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~~~~ 89 (487)
|.+|++||+|||.+++. ..++|+|||+|.+||++.+
T Consensus 1 g~~y~vgd~V~v~~~~~---------------------------------------~~~~~~~i~~I~~i~~~~~----- 36 (123)
T cd04370 1 GITYEVGDSVYVEPDDS---------------------------------------IKSDPPYIARIEELWEDTN----- 36 (123)
T ss_pred CCEEecCCEEEEecCCc---------------------------------------CCCCCCEEEEEeeeeECCC-----
Confidence 67999999999988760 0257789999999999876
Q ss_pred CCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCCcccccccccCCCCeeEEEEeec
Q psy13720 90 ASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYN 169 (487)
Q Consensus 90 ~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy~~~~Yd 169 (487)
+..+++|+|||||+||...... .+++||||+|++++++|+++|.|||.|.+.++............++.|||++.||
T Consensus 37 -~~~~~~v~wf~rp~e~~~~~~~--~~~~~Elf~s~~~~~i~v~~I~gkc~V~~~~~~~~~~~~~~~~~~~~f~~r~~yd 113 (123)
T cd04370 37 -GSKQVKVRWFYRPEETPKGLSP--FALRRELFLSDHLDEIPVESIIGKCKVLFVSEFEGLKQRPNKIDTDDFFCRLAYD 113 (123)
T ss_pred -CCEEEEEEEEEchhHhcccccc--ccccceeEEecCccccCHHHhccccEEEechHhhccccccccCCCCeEEEEEEEC
Confidence 7899999999999999755442 5899999999999999999999999999999765533122335679999999999
Q ss_pred CCCCcccc
Q psy13720 170 SKTEEFTN 177 (487)
Q Consensus 170 ~~~~~f~~ 177 (487)
+.+++|+.
T Consensus 114 ~~~~~fk~ 121 (123)
T cd04370 114 PTTKEFKA 121 (123)
T ss_pred cCcceEEe
Confidence 99888764
No 19
>cd04715 BAH_Orc1p_like BAH, or Bromo Adjacent Homology domain, as present in the Schizosaccharomyces pombe homolog of Saccharomyces cerevisiae Orc1p and similar proteins. Orc1 is part of the Yeast Sir1-origin recognition complex, the Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.88 E-value=3.4e-22 Score=180.45 Aligned_cols=126 Identities=21% Similarity=0.330 Sum_probs=98.7
Q ss_pred CeEeEEEEcCeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEE
Q psy13720 1 LYYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIF 80 (487)
Q Consensus 1 ~~y~~v~~~g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~ 80 (487)
.||++++++|+.|+|||||+|.++. .|.|||+|++||
T Consensus 18 ~~Y~s~~~~g~~y~lGD~Vlv~s~~-------------------------------------------~~~yIgkI~~iw 54 (159)
T cd04715 18 QFYRSFTYDGVEYRLYDDVYVHNGD-------------------------------------------SEPYIGKIIKIY 54 (159)
T ss_pred eEEEEEEECCEEEeCCCEEEEeCCC-------------------------------------------CCCEEEEEEEEE
Confidence 4899999999999999999997532 455999999999
Q ss_pred ecCCCCCCCCCceEEEEEeeeccccCCCCccccccCCCceEEecccc-----eeecccceeeeeEEEeecCCccccccc-
Q psy13720 81 KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEE-----EQVSLSDVQGKCFVVCEDNLQISTDRW- 154 (487)
Q Consensus 81 ~~~~~~~~~~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~-----d~vp~~~I~GKC~V~~~~~~~~~~~~~- 154 (487)
++.+ +.+..+++|+|||||+||.........+.+||||+|++. +++|+++|.|||.|++.+++...+.+.
T Consensus 55 e~~~----~~g~~~~~v~WfyRp~E~~~~~~~~~~~~~nEvFlS~~~d~~~~~~n~l~sI~gKC~Vl~~~ey~~~~~~s~ 130 (159)
T cd04715 55 ETAI----DSGKKKVKVIWFFRPSEIRMELKGEPKRHINEVFLACGRGEGLANINLLESIIGKCNVVCISEDFRNPQPSD 130 (159)
T ss_pred EcCC----cCCceEEEEEeeeCHHHhccccccCcccCCCcEEEecCcCccccccCcHHHccceeEEEEehHhhhCCCCcC
Confidence 9764 347789999999999999643322224789999999875 779999999999999999887655442
Q ss_pred ccCCCCeeEEEEeecCCCC
Q psy13720 155 SSRGPHRFYFNEAYNSKTE 173 (487)
Q Consensus 155 ~~~~~d~Fy~~~~Yd~~~~ 173 (487)
......+|.|...||...+
T Consensus 131 ~~~~~~~~~f~~~f~~~~~ 149 (159)
T cd04715 131 GIPTSADFLFPCNFDVGRC 149 (159)
T ss_pred CccccCcceeeeEEEecCc
Confidence 1233466777777877655
No 20
>KOG0919|consensus
Probab=99.86 E-value=2.4e-22 Score=186.99 Aligned_cols=166 Identities=23% Similarity=0.391 Sum_probs=137.5
Q ss_pred CCCeEeecccCchHHHHHHhhcCC-CcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 294 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~-~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~ 294 (487)
.+|+|++|++|.|||..+|+.|.+ ..+|.|+|+++-|.+.|++|.....+-..||..+.. .++. .-
T Consensus 2 ~pLrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~------------kefd-~l 68 (338)
T KOG0919|consen 2 MPLRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTV------------KEFD-KL 68 (338)
T ss_pred CceehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeH------------hhhh-hc
Confidence 689999999999999999999987 689999999999999999994333334445554311 1111 12
Q ss_pred cccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcC--CcEEEEecCcchhcccchhHHHHHHHHHHhCCCe
Q psy13720 295 EVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYR--PRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQ 372 (487)
Q Consensus 295 ~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~--P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~ 372 (487)
+++++..+||||+|...|+. ++..|+|..-+.+.+.++-..+ |+|++||||+||-+.. .-..+++.|++.||+
T Consensus 69 ~~~m~lMSPpCQPfTRiG~q--~D~~D~Rs~aflhil~~lP~~q~LPeYIL~ENVkGFE~S~---ar~~~i~~lencGf~ 143 (338)
T KOG0919|consen 69 QANMLLMSPPCQPFTRIGLQ--RDTEDKRSDAFLHILGLLPECQELPEYILMENVKGFESSQ---ARNQFIESLENCGFH 143 (338)
T ss_pred ccceEeeCCCCCchhhhccc--ccccCchhHHHHHHHhhhhhhhhhhHHHHHhhcccchhhh---HHHHHHHHHHhcCch
Confidence 67999999999999999874 6678899988888888888775 9999999999997653 456788999999999
Q ss_pred eEEEEEeccCCCCCCcccEEEEEEEcC
Q psy13720 373 CTFGTLQAGHFGVSQTRRRAIVLAAAP 399 (487)
Q Consensus 373 ~~~~~l~a~~yGvPQ~R~R~fiia~~~ 399 (487)
.+..+|....||+|-+|-|.|.||...
T Consensus 144 ~~EfiLsPtqfniPNsR~Ryy~iArl~ 170 (338)
T KOG0919|consen 144 WREFILSPTQFNIPNSRYRYYCIARLG 170 (338)
T ss_pred hhheeccccccCCCCcchheeehhhhC
Confidence 999999999999999999999998653
No 21
>cd04721 BAH_plant_1 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.83 E-value=1.9e-20 Score=164.22 Aligned_cols=115 Identities=12% Similarity=0.224 Sum_probs=93.9
Q ss_pred EEcCeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCC
Q psy13720 7 SYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKK 86 (487)
Q Consensus 7 ~~~g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~ 86 (487)
.-||.+++|||||||.++. ++.|||+|.+||++.+
T Consensus 2 ~r~~~~i~vGD~V~v~~~~-------------------------------------------~~~~va~Ie~i~ed~~-- 36 (130)
T cd04721 2 CRNGVTISVHDFVYVLSEE-------------------------------------------EDRYVAYIEDLYEDKK-- 36 (130)
T ss_pred ccCCEEEECCCEEEEeCCC-------------------------------------------CCcEEEEEEEEEEcCC--
Confidence 4689999999999998654 2239999999999876
Q ss_pred CCCCCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCCcccccccc-cCCCCeeEEE
Q psy13720 87 NVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWS-SRGPHRFYFN 165 (487)
Q Consensus 87 ~~~~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~-~~~~d~Fy~~ 165 (487)
+.++++|+||+||+||.....+. .+.+||||+|++.+++|+++|.|||+|+..+++......-. ....+.|+|+
T Consensus 37 ----g~~~v~v~WF~~p~E~~~~~~~~-~~~~~EvFlS~~~d~i~~~~I~gk~~Vls~~~y~k~~~~~~~~~~~~~f~C~ 111 (130)
T cd04721 37 ----GSKMVKVRWFHTTDEVGAALSPD-SVNPREIFLSPNLQVISVECIDGLATVLTREHYEKFQSVPKNSSELQAYFCY 111 (130)
T ss_pred ----CCEEEEEEEecCHHHhccccCCC-CCCCCeEEEcCCccccchHHeeeeeEECCHHHHhhhhccccCccccccEEEE
Confidence 78999999999999996644332 27899999999999999999999999999987765432221 1346799999
Q ss_pred EeecCC
Q psy13720 166 EAYNSK 171 (487)
Q Consensus 166 ~~Yd~~ 171 (487)
..||..
T Consensus 112 ~~~d~~ 117 (130)
T cd04721 112 RQIDNN 117 (130)
T ss_pred EEecCC
Confidence 999864
No 22
>cd04718 BAH_plant_2 BAH, or Bromo Adjacent Homology domain, plant-specific sub-family with unknown function. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.75 E-value=1.1e-19 Score=159.42 Aligned_cols=97 Identities=14% Similarity=0.318 Sum_probs=84.0
Q ss_pred CCCceEEEEEEEEecCCCCCCCCCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCC
Q psy13720 68 PAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNL 147 (487)
Q Consensus 68 ~~P~~IgrI~~i~~~~~~~~~~~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~ 147 (487)
+...|||||++||++. +..+|+++|||||+||+++..+ ++..+|||+|++.+++++++|.|||.|+..+++
T Consensus 50 ~~~~~vArIekiW~~~-------G~~~~~grWy~rPEET~~gr~~--~~~~kEvFlS~~~d~~~~~~I~gkC~V~~~keY 120 (148)
T cd04718 50 SGDLWLARIEKLWEEN-------GTYWYAARWYTLPEETHMGRQP--HNLRRELYLTNDFADIEMECILRHCSVKCPKEF 120 (148)
T ss_pred cCchHHHHHHHHHhcc-------CceEEEEEEEeCchhccCcccc--ccccceeeeccccccccHHHHhcccEEcCHHHc
Confidence 3445899999999953 6789999999999999877754 688999999999999999999999999999987
Q ss_pred cccccccccCCCCeeEEEEeecCCCCcccc
Q psy13720 148 QISTDRWSSRGPHRFYFNEAYNSKTEEFTN 177 (487)
Q Consensus 148 ~~~~~~~~~~~~d~Fy~~~~Yd~~~~~f~~ 177 (487)
.... ..+.|+|+|++.||..+++|+.
T Consensus 121 ~k~e----~~g~Dvy~Ce~~Yd~~~~~Fkr 146 (148)
T cd04718 121 RDAS----NDGDDVFLCEYEYDVHWQSFKR 146 (148)
T ss_pred cccc----CCCCceEEEEEEEhhhcCceee
Confidence 6432 2478999999999999999864
No 23
>cd04720 BAH_Orc1p_Yeast BAH, or Bromo Adjacent Homology domain, as present in Orc1p, which again is part of the Saccharomyces cerevisiae Sir1-origin recognition complex, and as present in Sir3p. The Orc1p BAH doman functions in epigenetic silencing. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.67 E-value=2.9e-16 Score=145.27 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=93.3
Q ss_pred cCeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCCCC
Q psy13720 9 EGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNV 88 (487)
Q Consensus 9 ~g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~~~ 88 (487)
+|.+|+|||+|.|.++. ..|+|||.|.+|+....
T Consensus 49 d~~~~~vGD~Vlik~~~------------------------------------------~~~~~V~iI~ei~~~~~---- 82 (179)
T cd04720 49 DGLELSVGDTILVKDDV------------------------------------------ANSPSVYLIHEIRLNTL---- 82 (179)
T ss_pred CCeEEeCCCEEEEeCCC------------------------------------------CCCCEEEEEEEEEeCCC----
Confidence 88999999999998765 25679999999997653
Q ss_pred CCCceEEEEEeeeccccCCCCccccccCC--------CceEEecccceeecccceeeeeEEEeecCCcccccccccCCCC
Q psy13720 89 SASDVFLTVKKFYRPENTHRSVEFTYQLD--------LNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPH 160 (487)
Q Consensus 89 ~~~~~~v~v~wfyRp~dt~~~~~~~~~~d--------~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d 160 (487)
...+.++|+|||||.|+..... ...++ ++|||+|.+.+.+++.+|.|||+|+..++....... ......
T Consensus 83 -~~~v~i~v~Wy~r~~Ei~~~~~-~~~~~~~~~~~~~~nElflT~~~d~i~l~~Ii~k~~Vls~~ef~~~~~~-~~~~~~ 159 (179)
T cd04720 83 -NNEVELWVMWFLRWFEINPARY-YKQFDPEFRSESNKNELYLTAELSEIKLKDIIDKANVLSESEFNDLSTD-DKNGER 159 (179)
T ss_pred -CCEEEEEEEEcCCHHHcccccc-cccccchhcccCCCceEEEecccceEEhhheeeeEEEecHHHhhhhccc-ccCCCc
Confidence 1457899999999999843221 11233 799999999999999999999999988765432211 123568
Q ss_pred eeEEEEeecCCCCccc
Q psy13720 161 RFYFNEAYNSKTEEFT 176 (487)
Q Consensus 161 ~Fy~~~~Yd~~~~~f~ 176 (487)
+|||+..||+.++.|.
T Consensus 160 ~F~cR~~~d~~~~~F~ 175 (179)
T cd04720 160 TFFCRYACEPDGEEFV 175 (179)
T ss_pred eEEEEEEEeCCCCeEc
Confidence 9999999999988775
No 24
>cd04719 BAH_Orc1p_animal BAH, or Bromo Adjacent Homology domain, as present in animal homologs of Saccharomyces cerevisiae Orc1p. Orc1 is part of the Yeast Sir1-origin recognition complex. The Orc1p BAH doman functions in epigenetic silencing. In vertebrates, a similar ORC protein complex exists, which has been shown essential for DNA replication in Xenopus laevis. BAH domains are found in a variety of proteins playing roles in transcriptional silencing and the remodeling of chromatin. It is assumed that in most or all of these instances the BAH domain mediates protein-protein interactions.
Probab=99.66 E-value=2.2e-16 Score=137.27 Aligned_cols=117 Identities=9% Similarity=0.155 Sum_probs=87.7
Q ss_pred eEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCCCCCCC
Q psy13720 11 EQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGKKNVSA 90 (487)
Q Consensus 11 ~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~~~~~~ 90 (487)
..++|||||+|.+++ . ++.|||+|++|++..+. +.
T Consensus 2 ~~i~vGd~VlI~~~d-----------------------------------------~-~~~yVAkI~~i~e~~~~---~~ 36 (128)
T cd04719 2 LTIEVGDFVLIEGED-----------------------------------------A-DGPDVARILHLYEDGNE---DD 36 (128)
T ss_pred eEEecCCEEEEECCC-----------------------------------------C-CCCcEeeehhhhccccC---Cc
Confidence 468999999998877 2 44599999999998651 11
Q ss_pred CceEEEEEeeeccccCCCCcc--ccccCCCceEEecccc---eeecccceeeeeEEEeecCCcccccccccCCCCeeEEE
Q psy13720 91 SDVFLTVKKFYRPENTHRSVE--FTYQLDLNKLYWSDEE---EQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFN 165 (487)
Q Consensus 91 ~~~~v~v~wfyRp~dt~~~~~--~~~~~d~reLF~S~~~---d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy~~ 165 (487)
....++||||||++|+..... .....+++|||++++. +.+++++|.|||.|+..+++++.++ ........||++
T Consensus 37 ~~~~~~VqWy~R~~Ev~~~~~~~~~~~~~~~EvF~~~~~~~~~~i~~etI~gkc~V~~~~~y~~l~~-~~~~~~~~~F~r 115 (128)
T cd04719 37 DPKRAIVQWFSRPSEVPKNKRKLLGREPHSQEVFFYSRSSCDNDIDAETIIGKVRVEPVEPKTDLPE-TKKKTGGPLFVK 115 (128)
T ss_pred ccceEEEEcccChHHccccchhhccCCCCCcEEEEecCccccCcEeHHHcccEEEEEEcCCccchhh-hccccCceEEEE
Confidence 245799999999999843221 1123689999999987 5899999999999999998876553 111345778888
Q ss_pred EeecCCCC
Q psy13720 166 EAYNSKTE 173 (487)
Q Consensus 166 ~~Yd~~~~ 173 (487)
..++.+..
T Consensus 116 ~~~~~k~~ 123 (128)
T cd04719 116 RYWDTKTF 123 (128)
T ss_pred EEeccccc
Confidence 87775543
No 25
>KOG1886|consensus
Probab=99.50 E-value=2.7e-14 Score=145.99 Aligned_cols=126 Identities=19% Similarity=0.296 Sum_probs=104.5
Q ss_pred EeEEEEcCeEEee-CCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEe
Q psy13720 3 YNCVSYEGEQYKL-KSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFK 81 (487)
Q Consensus 3 y~~v~~~g~~y~v-GD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~ 81 (487)
|+++.+.|.+|.. ||+|.+.|++ .+.|.|||+|..||.
T Consensus 40 ~~t~~~~~g~~~~~~d~vllvped-----------------------------------------~~~pPyvaii~~i~a 78 (464)
T KOG1886|consen 40 FETFIYRGGRYINYGDSVLLVPED-----------------------------------------PGKPPYVAIIEDIYA 78 (464)
T ss_pred ccceeeccCcccccCcceeecCCC-----------------------------------------CCCCCeeEEEeeeec
Confidence 5677788888888 9999999888 688899999999998
Q ss_pred cCCCCCCCCCceEEEEEeeeccccCCCCcccc-ccCCCceEEecccceeecccceeeeeEEEeecCCcccccccccCCCC
Q psy13720 82 KKGKKNVSASDVFLTVKKFYRPENTHRSVEFT-YQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPH 160 (487)
Q Consensus 82 ~~~~~~~~~~~~~v~v~wfyRp~dt~~~~~~~-~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d 160 (487)
...+ +.++++|+|||||+++..+.... .-.++||||+|.|+|.+++++|.+||.|+++......+ .+.+.+
T Consensus 79 ~~~g-----~~~k~ev~W~YrPee~~~~~~~~~~a~~~relF~SfH~De~~A~ti~~rC~V~fvp~~kqlp---~~~~~~ 150 (464)
T KOG1886|consen 79 QERG-----GNVKVEVQWFYRPEESEGGGSGKWGAKQPRELFLSFHEDEAFAETILHRCKVHFVPAYKQLP---NRVGHE 150 (464)
T ss_pred cccC-----CCcceecccccCCCccCCCCCCCcccCCCccccccccccchhhhhhcccceeeecccccccc---ccCCCC
Confidence 8762 57899999999999986443321 22678999999999999999999999999999776544 335678
Q ss_pred eeEEEEeecCCCCcccc
Q psy13720 161 RFYFNEAYNSKTEEFTN 177 (487)
Q Consensus 161 ~Fy~~~~Yd~~~~~f~~ 177 (487)
+|+|+..||..++.+..
T Consensus 151 ~f~~r~vYd~~~~~~~~ 167 (464)
T KOG1886|consen 151 SFICRRVYDAVTSKLRK 167 (464)
T ss_pred CcccccccccccccccC
Confidence 99999999998887654
No 26
>KOG1827|consensus
Probab=99.25 E-value=6.1e-12 Score=133.63 Aligned_cols=122 Identities=16% Similarity=0.259 Sum_probs=103.5
Q ss_pred EEEcCeEEeeCCeEEeCCCccccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEEEecCCC
Q psy13720 6 VSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAIFKKKGK 85 (487)
Q Consensus 6 v~~~g~~y~vGD~V~v~p~~~~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i~~~~~~ 85 (487)
|.+||..|.+||.|||.... ......|++|..+|+..+
T Consensus 184 ~~i~~~~~~~gd~vlv~~~~-----------------------------------------d~~~p~v~~Ier~w~~~d- 221 (629)
T KOG1827|consen 184 VEIDGTKYIVGDYVLVQNPA-----------------------------------------DNLKPIVAQIERLWKLPD- 221 (629)
T ss_pred ccccCcccccCceeeecCcc-----------------------------------------cccCCceeeecccccCcc-
Confidence 67899999999999997765 234459999999999987
Q ss_pred CCCCCCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCCcccccccccCCCCeeEEE
Q psy13720 86 KNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFN 165 (487)
Q Consensus 86 ~~~~~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy~~ 165 (487)
+..++.++|||||++|+|-..+ .+-.+|+|.+....+.+++.|+|+|+|.+..++.....+ .....+.|.|+
T Consensus 222 -----g~k~~~~~w~~rP~~T~H~a~r--~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~-~ls~~dv~lce 293 (629)
T KOG1827|consen 222 -----GEKWPQGCWIYRPEETVHRADR--KFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPE-NLSEEDVFLCE 293 (629)
T ss_pred -----cccccceeEeeCCccCcccccc--chhcccceecccccccHHHHhhcceEEeehhHhhhcCcc-cccccceeeEE
Confidence 8899999999999999876654 588999999999999999999999999999877553222 22456999999
Q ss_pred EeecCCCCcccc
Q psy13720 166 EAYNSKTEEFTN 177 (487)
Q Consensus 166 ~~Yd~~~~~f~~ 177 (487)
++|+...+.|..
T Consensus 294 sRyn~~~K~f~k 305 (629)
T KOG1827|consen 294 SRYNEQLKKFNK 305 (629)
T ss_pred eeeccchhhhcc
Confidence 999999887764
No 27
>KOG3554|consensus
Probab=99.03 E-value=2.3e-11 Score=122.43 Aligned_cols=108 Identities=18% Similarity=0.283 Sum_probs=83.8
Q ss_pred CCCceEEEEEEEEecCCCCCCCCCceEEEEEeeeccccCCCC--------------------------------------
Q psy13720 68 PAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRS-------------------------------------- 109 (487)
Q Consensus 68 ~~P~~IgrI~~i~~~~~~~~~~~~~~~v~v~wfyRp~dt~~~-------------------------------------- 109 (487)
..||.|-||+++.++.+ +.+.-+|-.|||..|+...
T Consensus 19 s~PYliRrIEELnKTa~------GnVeAkvVc~~RRRDIs~~L~~lAD~~ar~~~~y~a~~~a~~~~e~e~EEe~e~p~~ 92 (693)
T KOG3554|consen 19 SNPYLIRRIEELNKTAN------GNVEAKVVCYLRRRDISSHLLKLADKHARRFDNYAAPEAAPEATEAEIEEESECPAP 92 (693)
T ss_pred CChHHHHHHHHHhcccc------CCcceEEEEEEEccchHHHHHHHHHHHhhhcccccCcccCcccchhhhhhhccCCCc
Confidence 45999999999988877 8888999999999998410
Q ss_pred ----ccccccCCCceEEecccceeecccceeeeeEEEeecCCcccccccccCCCCeeEEEEeecCCCCccccCchhhh
Q psy13720 110 ----VEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTEAL 183 (487)
Q Consensus 110 ----~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~~~~~~~~~~~~~d~Fy~~~~Yd~~~~~f~~~P~~~~ 183 (487)
+.+.++-..||||+|.+.+..|...|+|||.|..+.+.+. .+.|.. ..|.||+...||+..+++--=.+++|
T Consensus 93 vdlt~~qrhqLrhrElFlsRQ~EsLPAthIRGKCsV~LLnete~-~~~YL~-~eDtFfySLVyDP~~kTLLADkGeIR 168 (693)
T KOG3554|consen 93 VDLTEKQRHQLRHRELFLSRQSESLPATHIRGKCSVTLLNETES-LQSYLE-KEDTFFYSLVYDPNQKTLLADKGEIR 168 (693)
T ss_pred CCCCHHHHHHHHHHHHHHhhhhccCchhhhccceeEEEecChHH-HHhhcc-ccceeEEEeeeccchhhhhccCccee
Confidence 0011112348999999999999999999999999987665 457774 45999999999998886653344444
No 28
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.86 E-value=6.8e-05 Score=68.38 Aligned_cols=78 Identities=23% Similarity=0.340 Sum_probs=52.1
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC------CCceeccchHHHHHHhhchhhhccccccCCC
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 292 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~ 292 (487)
+++|+|||+||-+..|.+.+ ..+.|+|+|+..++..++|.. ....+++|..+++.. +..
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~-------------~~~ 66 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKR-------------LKS 66 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGG-------------B--
T ss_pred EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhh-------------ccc
Confidence 58999999999999999885 579999999999999998841 345677787765321 110
Q ss_pred CCc-ccEEEccCCCcCcccCC
Q psy13720 293 KGE-VEMLCGGPPCQGFSGMN 312 (487)
Q Consensus 293 ~~~-vd~i~ggpPCq~fS~~~ 312 (487)
.. +|+|+.+||--|-|-..
T Consensus 67 -~~~~D~vFlSPPWGGp~Y~~ 86 (163)
T PF09445_consen 67 -NKIFDVVFLSPPWGGPSYSK 86 (163)
T ss_dssp -----SEEEE---BSSGGGGG
T ss_pred -cccccEEEECCCCCCccccc
Confidence 12 69999999998877543
No 29
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=97.83 E-value=0.00011 Score=62.82 Aligned_cols=77 Identities=23% Similarity=0.346 Sum_probs=58.2
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCC------CceeccchHHHHHHhhchhhhccccccCC
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG------CTVFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
.+++|+|||.|.+...+...| ...+.++|+|+.+++.-+.|++. ..++++|+.++.+ .+
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~-------------~~- 66 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPE-------------PL- 66 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHH-------------TC-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchh-------------hc-
Confidence 579999999999999999888 46899999999999999988753 3567788776531 12
Q ss_pred CCCcccEEEccCCCcCcc
Q psy13720 292 RKGEVEMLCGGPPCQGFS 309 (487)
Q Consensus 292 ~~~~vd~i~ggpPCq~fS 309 (487)
..+.+|+|++.||.-..+
T Consensus 67 ~~~~~D~Iv~npP~~~~~ 84 (117)
T PF13659_consen 67 PDGKFDLIVTNPPYGPRS 84 (117)
T ss_dssp TTT-EEEEEE--STTSBT
T ss_pred cCceeEEEEECCCCcccc
Confidence 135799999999985543
No 30
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.74 E-value=0.00053 Score=77.02 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=96.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC-------CCceeccchHHHHHHhhchhhhccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-------GCTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p-------~~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
..-++||||||.|++++-+..+|. ..+.++|+++.|++.-+.|.. ...++.+|+.++++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga-~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~------------ 604 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGA-KSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKE------------ 604 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHH------------
Confidence 345899999999999999998886 678999999999998888752 245677888776422
Q ss_pred cCCCCCcccEEEccCCCcCcccCCccCCcccccch--hHHHHHHHHHhhhcCCcE-EEEecCcchhcccchhHHHHHHHH
Q psy13720 289 KLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFK--NSLIVSYLSYCDYYRPRF-FLLENVRNFVAFKNSMVLKMTMRC 365 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r--~~L~~~~l~~v~~~~P~~-~ilENV~gl~~~~~~~~~~~i~~~ 365 (487)
+ .+.+|+|+.-||.-.-|.... ......+ ..|+.. ..+.++|.- +++++-..-+ ....+.
T Consensus 605 -~--~~~fDlIilDPP~f~~~~~~~---~~~~~~~~y~~l~~~---a~~lL~~gG~l~~~~~~~~~--------~~~~~~ 667 (702)
T PRK11783 605 -A--REQFDLIFIDPPTFSNSKRME---DSFDVQRDHVALIKD---AKRLLRPGGTLYFSNNKRGF--------KMDEEG 667 (702)
T ss_pred -c--CCCcCEEEECCCCCCCCCccc---hhhhHHHHHHHHHHH---HHHHcCCCCEEEEEeCCccC--------ChhHHH
Confidence 1 236899999999755432110 0000011 122222 234456654 4566544322 223666
Q ss_pred HHhCCCeeEEE--EEeccCCCCCCcccEEEEEE
Q psy13720 366 LTQIGYQCTFG--TLQAGHFGVSQTRRRAIVLA 396 (487)
Q Consensus 366 l~~~GY~~~~~--~l~a~~yGvPQ~R~R~fiia 396 (487)
+.+.||++... .-.+.||=++...+|.|.|.
T Consensus 668 ~~~~g~~~~~i~~~~~~~Dhp~~~~~~~~~~~~ 700 (702)
T PRK11783 668 LAKLGLKAEEITAKTLPPDFARNPKIHNCWLIT 700 (702)
T ss_pred HHhCCCeEEEEecCCCCCCCCCCcccceeEEEe
Confidence 77788876633 45667777777778888775
No 31
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=6.2e-05 Score=69.44 Aligned_cols=118 Identities=18% Similarity=0.257 Sum_probs=80.8
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC----CCceeccchHHHHHHhhchhhhccccccCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP----GCTVFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
..-+|+||-||+|-+++|....|- ..+.++|+|+.|+++.+.|-. +...++.|+.++
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~------------------ 105 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDF------------------ 105 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhc------------------
Confidence 344699999999999999999996 899999999999999999976 455666676654
Q ss_pred CCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCC
Q psy13720 292 RKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGY 371 (487)
Q Consensus 292 ~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY 371 (487)
.+.+|.++.-||= -...+ ..| ...+...+++-+ .+.+..+......+.+...++|+
T Consensus 106 -~~~~dtvimNPPF---G~~~r-----haD--r~Fl~~Ale~s~-------------vVYsiH~a~~~~f~~~~~~~~G~ 161 (198)
T COG2263 106 -RGKFDTVIMNPPF---GSQRR-----HAD--RPFLLKALEISD-------------VVYSIHKAGSRDFVEKFAADLGG 161 (198)
T ss_pred -CCccceEEECCCC---ccccc-----cCC--HHHHHHHHHhhh-------------eEEEeeccccHHHHHHHHHhcCC
Confidence 2467899999993 11111 122 223444444431 11222333345667777888999
Q ss_pred eeEEE
Q psy13720 372 QCTFG 376 (487)
Q Consensus 372 ~~~~~ 376 (487)
++...
T Consensus 162 ~v~~~ 166 (198)
T COG2263 162 TVTHI 166 (198)
T ss_pred eEEEE
Confidence 87654
No 32
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=97.70 E-value=0.00039 Score=72.33 Aligned_cols=70 Identities=19% Similarity=0.253 Sum_probs=53.4
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhchhhhccccccCCC
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 292 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~ 292 (487)
-+++|||||.|.+++.+...| ..++++|+++.|++..+.|. .+...+++|+.+++.. .
T Consensus 235 ~~vLDL~cG~G~~~l~la~~~--~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~-------------~-- 297 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGPD--TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATA-------------Q-- 297 (374)
T ss_pred CEEEEccCCccHHHHHHhhcC--CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHh-------------c--
Confidence 479999999999999988666 46899999999999888774 2345677787665311 0
Q ss_pred CCcccEEEccCC
Q psy13720 293 KGEVEMLCGGPP 304 (487)
Q Consensus 293 ~~~vd~i~ggpP 304 (487)
.+.+|+|+.-||
T Consensus 298 ~~~~D~vi~DPP 309 (374)
T TIGR02085 298 MSAPELVLVNPP 309 (374)
T ss_pred CCCCCEEEECCC
Confidence 124799999999
No 33
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=97.70 E-value=0.00063 Score=66.83 Aligned_cols=138 Identities=17% Similarity=0.276 Sum_probs=81.9
Q ss_pred CCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC--CCceeccchHHHHHHhhchhhhccccccCCCC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP--GCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 293 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p--~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~ 293 (487)
..+++|||||.|.+++.+... +- ..++++|+++.|++..+.|.. +..++++|+.+.+ ...+ .
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~-~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l------------~~~~--~ 151 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDG-IELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL------------PTAL--R 151 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc------------chhc--C
Confidence 457999999999999988653 22 257899999999999888753 2345555654321 0111 2
Q ss_pred CcccEEEccCCCcCcccCCccCCc-ccccchhH---------HHHHHHHHh-hhcCCc-EEEEecCcchhcccchhHHHH
Q psy13720 294 GEVEMLCGGPPCQGFSGMNRFNQR-QYSAFKNS---------LIVSYLSYC-DYYRPR-FFLLENVRNFVAFKNSMVLKM 361 (487)
Q Consensus 294 ~~vd~i~ggpPCq~fS~~~~~~~~-~~~d~r~~---------L~~~~l~~v-~~~~P~-~~ilENV~gl~~~~~~~~~~~ 361 (487)
+.+|+|+..|||.+.+...+.... ...+++.. ++..+++-+ +.++|. .++||--. .....
T Consensus 152 ~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~--------~~~~~ 223 (251)
T TIGR03704 152 GRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE--------RQAPL 223 (251)
T ss_pred CCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc--------chHHH
Confidence 468999999999987643321100 00111111 233333222 344665 35555211 12456
Q ss_pred HHHHHHhCCCeeEEEE
Q psy13720 362 TMRCLTQIGYQCTFGT 377 (487)
Q Consensus 362 i~~~l~~~GY~~~~~~ 377 (487)
++..|.+.|+......
T Consensus 224 v~~~l~~~g~~~~~~~ 239 (251)
T TIGR03704 224 AVEAFARAGLIARVAS 239 (251)
T ss_pred HHHHHHHCCCCceeeE
Confidence 7888888888766554
No 34
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.62 E-value=0.00012 Score=68.32 Aligned_cols=76 Identities=25% Similarity=0.349 Sum_probs=51.5
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC------CCceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..-++||||||.|.+++=.-.-|. +-+++||.++.|+++.+.|.. .+.++..|....+....
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA-~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~----------- 109 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGA-KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA----------- 109 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH-----------
T ss_pred CCCeEEEcCCccCccHHHHHhcCC-CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc-----------
Confidence 678899999999988765545586 789999999999999999853 24567778766543211
Q ss_pred CCCCCcccEEEccCC
Q psy13720 290 LPRKGEVEMLCGGPP 304 (487)
Q Consensus 290 ~p~~~~vd~i~ggpP 304 (487)
.....+|+|..-||
T Consensus 110 -~~~~~fDiIflDPP 123 (183)
T PF03602_consen 110 -KKGEKFDIIFLDPP 123 (183)
T ss_dssp -HCTS-EEEEEE--S
T ss_pred -ccCCCceEEEECCC
Confidence 01236899999999
No 35
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=97.55 E-value=0.00085 Score=68.24 Aligned_cols=125 Identities=19% Similarity=0.200 Sum_probs=87.1
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC-----C-CceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----G-CTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p-----~-~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..-+|+|+|||.|-+|+-+...|-.+ ++|+|+||.|.+-++.|.. + ...+++|++++..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~-------------- 252 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAP-------------- 252 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhh--------------
Confidence 35579999999999999999999643 9999999999999998842 2 4478888887631
Q ss_pred CCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhC
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQI 369 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~ 369 (487)
..+.+|=|+.|-|= .. ...+...++.++. ..-.-.-|||+.-.... ..++.+......+
T Consensus 253 --~~~~aDrIim~~p~------------~a----~~fl~~A~~~~k~-~g~iHyy~~~~e~~~~~--~~~~~i~~~~~~~ 311 (341)
T COG2520 253 --ELGVADRIIMGLPK------------SA----HEFLPLALELLKD-GGIIHYYEFVPEDDIEE--RPEKRIKSAARKG 311 (341)
T ss_pred --ccccCCEEEeCCCC------------cc----hhhHHHHHHHhhc-CcEEEEEeccchhhccc--chHHHHHHHHhhc
Confidence 11467877777661 00 1234445555555 66677788887644321 2567777777888
Q ss_pred CCeeEEE
Q psy13720 370 GYQCTFG 376 (487)
Q Consensus 370 GY~~~~~ 376 (487)
||++...
T Consensus 312 ~~~~~v~ 318 (341)
T COG2520 312 GYKVEVL 318 (341)
T ss_pred cCcceEE
Confidence 9976543
No 36
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=97.55 E-value=0.0011 Score=70.20 Aligned_cols=121 Identities=17% Similarity=0.232 Sum_probs=79.4
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
..-+++|||||.|.+++-+...+ ..++++|+++.|++.-+.|. .+..++.+|+.+++.... .
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~-----------~ 358 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP-----------W 358 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH-----------h
Confidence 34579999999999999988765 46899999999999888774 345677888876532110 0
Q ss_pred CCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCC
Q psy13720 291 PRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIG 370 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~G 370 (487)
..+.+|+|+..||..| |...+++.+..++|+-++.- + -+...+..-+..|.+.|
T Consensus 359 -~~~~~D~vi~dPPr~G------------------~~~~~l~~l~~l~~~~ivyv------s-c~p~tlard~~~l~~~g 412 (431)
T TIGR00479 359 -AGQIPDVLLLDPPRKG------------------CAAEVLRTIIELKPERIVYV------S-CNPATLARDLEFLCKEG 412 (431)
T ss_pred -cCCCCCEEEECcCCCC------------------CCHHHHHHHHhcCCCEEEEE------c-CCHHHHHHHHHHHHHCC
Confidence 1135799999999321 11233444556778765432 1 11234455566777889
Q ss_pred CeeEE
Q psy13720 371 YQCTF 375 (487)
Q Consensus 371 Y~~~~ 375 (487)
|.+..
T Consensus 413 y~~~~ 417 (431)
T TIGR00479 413 YGITW 417 (431)
T ss_pred eeEEE
Confidence 98654
No 37
>PHA03411 putative methyltransferase; Provisional
Probab=97.47 E-value=0.0015 Score=64.50 Aligned_cols=140 Identities=12% Similarity=0.043 Sum_probs=84.3
Q ss_pred CeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCcc
Q psy13720 218 LRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEV 296 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~v 296 (487)
-++||++||+|.++..+... +. .-+.++|+++.+++.-+.|+++..++++|+.++. ..+.+
T Consensus 66 grVLDLGcGsGilsl~la~r~~~-~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~-----------------~~~kF 127 (279)
T PHA03411 66 GKVLDLCAGIGRLSFCMLHRCKP-EKIVCVELNPEFARIGKRLLPEAEWITSDVFEFE-----------------SNEKF 127 (279)
T ss_pred CeEEEcCCCCCHHHHHHHHhCCC-CEEEEEECCHHHHHHHHHhCcCCEEEECchhhhc-----------------ccCCC
Confidence 37999999999998877543 22 3688999999999999999988888888876541 12368
Q ss_pred cEEEccCCCcCcccCCccC---CcccccchhHH-HHHHHHH-hhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCC
Q psy13720 297 EMLCGGPPCQGFSGMNRFN---QRQYSAFKNSL-IVSYLSY-CDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGY 371 (487)
Q Consensus 297 d~i~ggpPCq~fS~~~~~~---~~~~~d~r~~L-~~~~l~~-v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY 371 (487)
|+|++.||--......+.. -++....+..| +..++.- -..++|.-.+.+-+.+---...+..-+...+.|++.|.
T Consensus 128 DlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl~~~~y~~~l~~~g~ 207 (279)
T PHA03411 128 DVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTMKSNKYLKWSKQTGL 207 (279)
T ss_pred cEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccccccCCHHHHHHHHHhcCc
Confidence 9999999976644322110 01111222222 2333322 23446764444444442222222233555666777787
Q ss_pred eeEE
Q psy13720 372 QCTF 375 (487)
Q Consensus 372 ~~~~ 375 (487)
....
T Consensus 208 ~~~~ 211 (279)
T PHA03411 208 VTYA 211 (279)
T ss_pred EecC
Confidence 6543
No 38
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=97.42 E-value=0.00053 Score=64.93 Aligned_cols=73 Identities=23% Similarity=0.294 Sum_probs=53.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
..-++||||||.|.+++.+-..|. .-+.++|+++.|++..+.|. .+..++++|+...+..
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~-------------- 117 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ-------------- 117 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh--------------
Confidence 345899999999999986444454 57899999999999888773 2345667776554210
Q ss_pred CCCCcccEEEccCC
Q psy13720 291 PRKGEVEMLCGGPP 304 (487)
Q Consensus 291 p~~~~vd~i~ggpP 304 (487)
..+.+|+|+.-||
T Consensus 118 -~~~~fDlV~~DPP 130 (199)
T PRK10909 118 -PGTPHNVVFVDPP 130 (199)
T ss_pred -cCCCceEEEECCC
Confidence 0125899999999
No 39
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=97.41 E-value=0.00046 Score=64.83 Aligned_cols=76 Identities=22% Similarity=0.267 Sum_probs=55.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC------CCceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..-++||||||.|.+++-+...|. ..+.++|.++.|++..+.|.. .+.++.+|+.+.+....
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~----------- 116 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA----------- 116 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh-----------
Confidence 356799999999999999888886 679999999999998888741 23567778755532110
Q ss_pred CCCCCcccEEEccCC
Q psy13720 290 LPRKGEVEMLCGGPP 304 (487)
Q Consensus 290 ~p~~~~vd~i~ggpP 304 (487)
......|+|+.-||
T Consensus 117 -~~~~~~dvv~~DPP 130 (189)
T TIGR00095 117 -KKPTFDNVIYLDPP 130 (189)
T ss_pred -ccCCCceEEEECcC
Confidence 00113689999888
No 40
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.33 E-value=0.00074 Score=62.75 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=56.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC------CCCceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN------PGCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..-++||||||.|++++=.-.-|. .-+..+|.|..|..+.+.|. ..+.++..|...+|..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~------------- 108 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQ------------- 108 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHh-------------
Confidence 678899999999987655445576 78899999999999999984 3445666666654322
Q ss_pred CCCCCcccEEEccCCCc
Q psy13720 290 LPRKGEVEMLCGGPPCQ 306 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq 306 (487)
+.....+|+|..-||=.
T Consensus 109 ~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 109 LGTREPFDLVFLDPPYA 125 (187)
T ss_pred cCCCCcccEEEeCCCCc
Confidence 22222599999999953
No 41
>KOG3420|consensus
Probab=97.32 E-value=0.00025 Score=62.51 Aligned_cols=72 Identities=18% Similarity=0.201 Sum_probs=54.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCc----eeccchHHHHHHhhchhhhccccccCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCT----VFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~----~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
...+++||.||||.++.|+..-+. +.+.++|+|+.|++++..|--+.+ +.+.||.++ .+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~-e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildl----------------e~ 110 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKN-ESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDL----------------EL 110 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCC-ceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccch----------------hc
Confidence 667799999999999999999996 899999999999999999864322 222233221 12
Q ss_pred CCCcccEEEccCC
Q psy13720 292 RKGEVEMLCGGPP 304 (487)
Q Consensus 292 ~~~~vd~i~ggpP 304 (487)
..|-+|..+.-||
T Consensus 111 ~~g~fDtaviNpp 123 (185)
T KOG3420|consen 111 KGGIFDTAVINPP 123 (185)
T ss_pred cCCeEeeEEecCC
Confidence 3467888888888
No 42
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=97.29 E-value=0.0024 Score=64.81 Aligned_cols=72 Identities=18% Similarity=0.290 Sum_probs=54.9
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhchhhhccccccCC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
.-++||||||.|.+++-+...|. -++++|+++.|++.-+.|. .+...+.+|+.++...
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~--~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~--------------- 236 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGM--QLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA--------------- 236 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---------------
Confidence 45799999999999999988773 6899999999999887764 2355677787665210
Q ss_pred CCCcccEEEccCCC
Q psy13720 292 RKGEVEMLCGGPPC 305 (487)
Q Consensus 292 ~~~~vd~i~ggpPC 305 (487)
..+.+|+|+.-||+
T Consensus 237 ~~~~~D~Vv~dPPr 250 (315)
T PRK03522 237 QGEVPDLVLVNPPR 250 (315)
T ss_pred cCCCCeEEEECCCC
Confidence 11257999999994
No 43
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=97.18 E-value=0.0011 Score=69.46 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=57.4
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC-------CCceeccchHHHHHHhhchhhhccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-------GCTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p-------~~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
+.-++||||||.||+++.....|. ..+.++|+++.|++..+.|.. ...++.+|+.+++....
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga-~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~---------- 288 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGC-SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR---------- 288 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCC-CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH----------
Confidence 456799999999999887666675 678999999999988777642 23467788887653321
Q ss_pred cCCCCCcccEEEccCCC
Q psy13720 289 KLPRKGEVEMLCGGPPC 305 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPC 305 (487)
...+.+|+|+.-||+
T Consensus 289 --~~~~~fDlVilDPP~ 303 (396)
T PRK15128 289 --DRGEKFDVIVMDPPK 303 (396)
T ss_pred --hcCCCCCEEEECCCC
Confidence 012368999999996
No 44
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=97.16 E-value=0.0065 Score=62.95 Aligned_cols=83 Identities=18% Similarity=0.264 Sum_probs=55.6
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhchhhhc-cccccCCC
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCD-DKKQKLPR 292 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~~~~~-~~~~~~p~ 292 (487)
++||||||.|++++.+... + .-++++|+++.|++..+.|. .+...+.+|+.+++.......... ..+... .
T Consensus 209 ~vLDl~~G~G~~sl~la~~-~-~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~-~ 285 (362)
T PRK05031 209 DLLELYCGNGNFTLALARN-F-RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDL-K 285 (362)
T ss_pred eEEEEeccccHHHHHHHhh-C-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccc-c
Confidence 5999999999999988764 3 57899999999999888773 135578889888764321100000 000000 0
Q ss_pred CCcccEEEccCC
Q psy13720 293 KGEVEMLCGGPP 304 (487)
Q Consensus 293 ~~~vd~i~ggpP 304 (487)
...+|+|+.-||
T Consensus 286 ~~~~D~v~lDPP 297 (362)
T PRK05031 286 SYNFSTIFVDPP 297 (362)
T ss_pred CCCCCEEEECCC
Confidence 114799999999
No 45
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.13 E-value=0.00063 Score=64.34 Aligned_cols=72 Identities=25% Similarity=0.384 Sum_probs=45.6
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CC-CceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PG-CTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~-~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
+.=+++|+|||+|.+++-+...+-...++|+|++|.|.+.++.|- .+ ..++++|..+++
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--------------- 165 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--------------- 165 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----------------
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc---------------
Confidence 345799999999999988876222268999999999999998763 11 235667766552
Q ss_pred CCCCCcccEEEccCC
Q psy13720 290 LPRKGEVEMLCGGPP 304 (487)
Q Consensus 290 ~p~~~~vd~i~ggpP 304 (487)
..+.+|-++.+.|
T Consensus 166 --~~~~~drvim~lp 178 (200)
T PF02475_consen 166 --PEGKFDRVIMNLP 178 (200)
T ss_dssp ---TT-EEEEEE--T
T ss_pred --CccccCEEEECCh
Confidence 1346777888877
No 46
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=97.12 E-value=0.0089 Score=55.30 Aligned_cols=144 Identities=18% Similarity=0.202 Sum_probs=84.8
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC----CCceeccchHHHHHHhhchhhhccccccCCC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP----GCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 292 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~ 292 (487)
.-+++||.||.|.++..+...|. .+.++|+++.+++.-+.|.. ...+...|+.+ .+
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~-----------------~~- 79 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFK-----------------GV- 79 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccc-----------------cc-
Confidence 34699999999999999988884 68899999999988777642 22233333221 11
Q ss_pred CCcccEEEccCCCcCcccCCccCC------cccccchhHHHHHHHHHh-hhcCCc--EEEEecCcchhcccchhHHHHHH
Q psy13720 293 KGEVEMLCGGPPCQGFSGMNRFNQ------RQYSAFKNSLIVSYLSYC-DYYRPR--FFLLENVRNFVAFKNSMVLKMTM 363 (487)
Q Consensus 293 ~~~vd~i~ggpPCq~fS~~~~~~~------~~~~d~r~~L~~~~l~~v-~~~~P~--~~ilENV~gl~~~~~~~~~~~i~ 363 (487)
.+.+|+|+.+||+...+...+... ....+. ..++..+++.+ ..++|. ++++++... ....++
T Consensus 80 ~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~--------~~~~~~ 150 (179)
T TIGR00537 80 RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDG-RKVIDRFLDELPEILKEGGRVQLIQSSLN--------GEPDTF 150 (179)
T ss_pred CCcccEEEECCCCCCCcchhcccchhhhhhhcCCch-HHHHHHHHHhHHHhhCCCCEEEEEEeccC--------ChHHHH
Confidence 237899999999976653211000 000111 12334444433 344663 444442211 145778
Q ss_pred HHHHhCCCeeEEEEEeccCCCCCCcccEEEEE
Q psy13720 364 RCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 395 (487)
Q Consensus 364 ~~l~~~GY~~~~~~l~a~~yGvPQ~R~R~fii 395 (487)
..|.+.||++. ....||.| +++++++
T Consensus 151 ~~l~~~gf~~~----~~~~~~~~--~~~~~~~ 176 (179)
T TIGR00537 151 DKLDERGFRYE----IVAERGLF--FEELFAI 176 (179)
T ss_pred HHHHhCCCeEE----EEEEeecC--ceEEEEE
Confidence 88899998754 34456655 4455543
No 47
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=97.09 E-value=0.0054 Score=60.70 Aligned_cols=81 Identities=19% Similarity=0.194 Sum_probs=55.9
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..-++||+|||.||.+.-+... +-.-.++|+|+++..++..+.|.. +..+...|...+. .
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-------------~- 136 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-------------A- 136 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-------------h-
Confidence 4457999999999999877542 111258999999999988877742 2344555654331 0
Q ss_pred CCCCCcccEEEccCCCcCcccCC
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMN 312 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~ 312 (487)
..+.+|.|+.-|||.|.-...
T Consensus 137 --~~~~fD~Vl~D~Pcsg~G~~~ 157 (264)
T TIGR00446 137 --AVPKFDAILLDAPCSGEGVIR 157 (264)
T ss_pred --hccCCCEEEEcCCCCCCcccc
Confidence 123589999999998665544
No 48
>PHA03412 putative methyltransferase; Provisional
Probab=97.06 E-value=0.0048 Score=59.60 Aligned_cols=73 Identities=21% Similarity=0.184 Sum_probs=56.9
Q ss_pred CCeEeecccCchHHHHHHhhc----CCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKS----GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 292 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~a----G~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~ 292 (487)
..++||+.||.|.++..+... +- ..+.++|+|+.|++.-+.|.+...+++.|+... +.
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~-~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~-----------------~~ 111 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKP-REIVCVELNHTYYKLGKRIVPEATWINADALTT-----------------EF 111 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCC-cEEEEEECCHHHHHHHHhhccCCEEEEcchhcc-----------------cc
Confidence 468999999999999987643 22 368999999999999999988877777776421 11
Q ss_pred CCcccEEEccCCCcC
Q psy13720 293 KGEVEMLCGGPPCQG 307 (487)
Q Consensus 293 ~~~vd~i~ggpPCq~ 307 (487)
.+.+|+|++-||=-.
T Consensus 112 ~~~FDlIIsNPPY~~ 126 (241)
T PHA03412 112 DTLFDMAISNPPFGK 126 (241)
T ss_pred cCCccEEEECCCCCC
Confidence 237999999999544
No 49
>PRK14967 putative methyltransferase; Provisional
Probab=96.98 E-value=0.025 Score=54.37 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=77.5
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC----CCceeccchHHHHHHhhchhhhccccccCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP----GCTVFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
..-++||++||.|.++.-+...|. ..+.++|+++.+++.-+.|.. ...++++|+.+. ++
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~-~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~----------------~~ 98 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGA-GSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA----------------VE 98 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh----------------cc
Confidence 345899999999999988887775 578999999999987666542 233444454321 12
Q ss_pred CCCcccEEEccCCCcCcccCCccCCc---cc--ccchhHHHHHHHH-HhhhcCCcEEEEecCcchhcccchhHHHHHHHH
Q psy13720 292 RKGEVEMLCGGPPCQGFSGMNRFNQR---QY--SAFKNSLIVSYLS-YCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 365 (487)
Q Consensus 292 ~~~~vd~i~ggpPCq~fS~~~~~~~~---~~--~d~r~~L~~~~l~-~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~ 365 (487)
.+.+|+|+..||-..-+..+..... .. ......++..+++ +.+.++|.-.++=-...+ ..+..+++.
T Consensus 99 -~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~------~~~~~~~~~ 171 (223)
T PRK14967 99 -FRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL------SGVERTLTR 171 (223)
T ss_pred -CCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc------cCHHHHHHH
Confidence 2478999999875433322110000 00 0001122334443 345567754333000111 123567778
Q ss_pred HHhCCCeeEEE
Q psy13720 366 LTQIGYQCTFG 376 (487)
Q Consensus 366 l~~~GY~~~~~ 376 (487)
|.+.|+++...
T Consensus 172 l~~~g~~~~~~ 182 (223)
T PRK14967 172 LSEAGLDAEVV 182 (223)
T ss_pred HHHCCCCeEEE
Confidence 88888875544
No 50
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.97 E-value=0.0076 Score=63.67 Aligned_cols=117 Identities=18% Similarity=0.239 Sum_probs=79.7
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
..-+++|||||.|.+++.|.... .-+.++|+++.|++.-+.|- -++....+|..++.....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~------------ 358 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW------------ 358 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc------------
Confidence 55689999999999999997544 56899999999999888763 124455567666542211
Q ss_pred CCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEE--EecCcchhcccchhHHHHHHHHHHh
Q psy13720 291 PRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFL--LENVRNFVAFKNSMVLKMTMRCLTQ 368 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~i--lENV~gl~~~~~~~~~~~i~~~l~~ 368 (487)
.....|.|+.-|| | .+. -.++++.+..+.|+.++ -=|. ..+..=+..|.+
T Consensus 359 -~~~~~d~VvvDPP--------R---~G~-------~~~~lk~l~~~~p~~IvYVSCNP---------~TlaRDl~~L~~ 410 (432)
T COG2265 359 -EGYKPDVVVVDPP--------R---AGA-------DREVLKQLAKLKPKRIVYVSCNP---------ATLARDLAILAS 410 (432)
T ss_pred -ccCCCCEEEECCC--------C---CCC-------CHHHHHHHHhcCCCcEEEEeCCH---------HHHHHHHHHHHh
Confidence 1225799999999 3 121 13556677888998443 3333 344555677888
Q ss_pred CCCeeE
Q psy13720 369 IGYQCT 374 (487)
Q Consensus 369 ~GY~~~ 374 (487)
.||.+.
T Consensus 411 ~gy~i~ 416 (432)
T COG2265 411 TGYEIE 416 (432)
T ss_pred CCeEEE
Confidence 899754
No 51
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=96.89 E-value=0.012 Score=62.66 Aligned_cols=77 Identities=17% Similarity=0.218 Sum_probs=56.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
..-++||||||.|.++..+...+ ..+.|+|+++.|++..+.|. .+...+++|+.+.+... .+
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~-----------~~ 363 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ-----------PW 363 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh-----------hh
Confidence 44689999999999999988766 36889999999999888764 23556677776542110 01
Q ss_pred CCCCcccEEEccCCCc
Q psy13720 291 PRKGEVEMLCGGPPCQ 306 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq 306 (487)
+ .+.+|+|+.-||+.
T Consensus 364 ~-~~~fD~Vi~dPPr~ 378 (443)
T PRK13168 364 A-LGGFDKVLLDPPRA 378 (443)
T ss_pred h-cCCCCEEEECcCCc
Confidence 1 23589999999964
No 52
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=96.83 E-value=0.0085 Score=63.48 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=57.5
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCC----CceeccchHHHHHHhhchhhhccccccCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG----CTVFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
+.-++||++||.|+.+.-+...+-...++|+|+++.+++..+.|... ..+.++|+.++. ...
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~--------------~~~ 309 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPA--------------QWW 309 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccch--------------hhc
Confidence 45579999999999998887654213689999999999988887542 234445543321 000
Q ss_pred CCCcccEEEccCCCcCcccCC
Q psy13720 292 RKGEVEMLCGGPPCQGFSGMN 312 (487)
Q Consensus 292 ~~~~vd~i~ggpPCq~fS~~~ 312 (487)
..+.+|.|+..|||.+.....
T Consensus 310 ~~~~fD~Vl~D~Pcs~~G~~~ 330 (427)
T PRK10901 310 DGQPFDRILLDAPCSATGVIR 330 (427)
T ss_pred ccCCCCEEEECCCCCcccccc
Confidence 124699999999998754433
No 53
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.73 E-value=0.026 Score=58.70 Aligned_cols=136 Identities=18% Similarity=0.269 Sum_probs=87.9
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC-------CCceeccchHHHHHHhhchhhhcccccc
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-------GCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p-------~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
.=+||+|||=.||+|+-...+|. .-+..||++..|++.-+.|+- ....+++|+-++++....
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~gGA-~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~---------- 286 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALGGA-SEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAER---------- 286 (393)
T ss_pred CCeEEEecccCcHHHHHHHhcCC-CceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHh----------
Confidence 44599999999999999999997 678899999999998888852 134678898888755321
Q ss_pred CCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCC--cEEEEecCcchhcccchhHHHHHHHHHH
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRP--RFFLLENVRNFVAFKNSMVLKMTMRCLT 367 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P--~~~ilENV~gl~~~~~~~~~~~i~~~l~ 367 (487)
....+|+|+.-|| .|+...+ ...+..|. ...-....++.++| -+++.-|-..+-. ..+.+.+.+.+.
T Consensus 287 --~g~~fDlIilDPP--sF~r~k~---~~~~~~rd-y~~l~~~~~~iL~pgG~l~~~s~~~~~~~---~~f~~~i~~a~~ 355 (393)
T COG1092 287 --RGEKFDLIILDPP--SFARSKK---QEFSAQRD-YKDLNDLALRLLAPGGTLVTSSCSRHFSS---DLFLEIIARAAA 355 (393)
T ss_pred --cCCcccEEEECCc--ccccCcc---cchhHHHH-HHHHHHHHHHHcCCCCEEEEEecCCccCH---HHHHHHHHHHHH
Confidence 1227899999999 5554322 11222222 11222233445577 4555555555422 234566777777
Q ss_pred hCCCeeE
Q psy13720 368 QIGYQCT 374 (487)
Q Consensus 368 ~~GY~~~ 374 (487)
.+|..+.
T Consensus 356 ~~~~~~~ 362 (393)
T COG1092 356 AAGRRAQ 362 (393)
T ss_pred hcCCcEE
Confidence 7665543
No 54
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=96.72 E-value=0.012 Score=62.74 Aligned_cols=81 Identities=14% Similarity=0.181 Sum_probs=56.2
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCCC-----CceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPG-----CTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..-++||+|||.||.+.-+... +-...++|+|+++..++..+.|... ..+.++|...+
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~---------------- 313 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSF---------------- 313 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCccccc----------------
Confidence 3457999999999988766442 1113689999999999888777532 23344444322
Q ss_pred CCCCCcccEEEccCCCcCcccCCc
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMNR 313 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~~ 313 (487)
+..+.+|+|+..+||.|.....|
T Consensus 314 -~~~~~fD~Vl~D~Pcsg~g~~~r 336 (445)
T PRK14904 314 -SPEEQPDAILLDAPCTGTGVLGR 336 (445)
T ss_pred -ccCCCCCEEEEcCCCCCcchhhc
Confidence 12246899999999998877654
No 55
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=96.70 E-value=0.016 Score=56.19 Aligned_cols=77 Identities=23% Similarity=0.395 Sum_probs=54.3
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhccccccCC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
..+++|+.||.|.++.-+....-...+.++|+++.+++.-+.|.. +..++++|+.+. ++
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~----------------~~ 151 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP----------------LP 151 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc----------------Cc
Confidence 457999999999998888765211368899999999987776642 234444453221 11
Q ss_pred CCCcccEEEccCCCcCccc
Q psy13720 292 RKGEVEMLCGGPPCQGFSG 310 (487)
Q Consensus 292 ~~~~vd~i~ggpPCq~fS~ 310 (487)
.+.+|+|+..||+...+.
T Consensus 152 -~~~fD~Vi~npPy~~~~~ 169 (251)
T TIGR03534 152 -GGKFDLIVSNPPYIPEAD 169 (251)
T ss_pred -CCceeEEEECCCCCchhh
Confidence 247999999999887664
No 56
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=96.67 E-value=0.0036 Score=57.57 Aligned_cols=72 Identities=26% Similarity=0.404 Sum_probs=50.8
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCC-----CceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG-----CTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
..-++|||.||+|.+++-+...+-...+.++|+++.|++.-+.|... ..++..|+.+ .+
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~----------------~~ 94 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFE----------------AL 94 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTT----------------TC
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccc----------------cc
Confidence 45679999999999999998877533699999999999988887421 2344444321 12
Q ss_pred CCCCcccEEEccCC
Q psy13720 291 PRKGEVEMLCGGPP 304 (487)
Q Consensus 291 p~~~~vd~i~ggpP 304 (487)
+ .+.+|+|+..||
T Consensus 95 ~-~~~fD~Iv~NPP 107 (170)
T PF05175_consen 95 P-DGKFDLIVSNPP 107 (170)
T ss_dssp C-TTCEEEEEE---
T ss_pred c-ccceeEEEEccc
Confidence 2 458999999999
No 57
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.62 E-value=0.035 Score=54.83 Aligned_cols=78 Identities=22% Similarity=0.374 Sum_probs=55.7
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
+..+++|+.||.|.++..+....-...+.++|+++.+++.-+.|.. +..++..|+.. .+
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~----------------~~ 171 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE----------------PL 171 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC----------------cC
Confidence 4568999999999998888766422468999999999998887743 22334444311 11
Q ss_pred CCCCcccEEEccCCCcCccc
Q psy13720 291 PRKGEVEMLCGGPPCQGFSG 310 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~ 310 (487)
+ .+.+|+|+..||+-+.+.
T Consensus 172 ~-~~~fD~Iv~npPy~~~~~ 190 (275)
T PRK09328 172 P-GGRFDLIVSNPPYIPEAD 190 (275)
T ss_pred C-CCceeEEEECCCcCCcch
Confidence 1 357999999999977654
No 58
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.61 E-value=0.0057 Score=63.46 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=47.5
Q ss_pred CCeEeecccCchHHHHHHhhc--CCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHH
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKS--GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQR 276 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~a--G~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~ 276 (487)
.+++||+|||+|.+++=+... |. +-++++|+|+.|++..+.|.. +..++++|.+.++..
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga-~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~ 110 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGV-REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRY 110 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHH
Confidence 589999999999887666543 76 789999999999999988742 356888999888653
No 59
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=96.59 E-value=0.0098 Score=59.50 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=54.6
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC------CCceeccchHHHHHHhhchhhhccccccC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
..+++|++||.|.++..+....-.-.+.++|+++.|++.-+.|.. ...++.+|+.+ .+
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~----------------~~ 185 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFA----------------AL 185 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhh----------------cc
Confidence 457999999999999998765321368899999999998887742 12344455421 12
Q ss_pred CCCCcccEEEccCCCcCccc
Q psy13720 291 PRKGEVEMLCGGPPCQGFSG 310 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~ 310 (487)
+ .+.+|+|+.-||+-..+.
T Consensus 186 ~-~~~fD~Iv~NPPy~~~~~ 204 (284)
T TIGR03533 186 P-GRKYDLIVSNPPYVDAED 204 (284)
T ss_pred C-CCCccEEEECCCCCCccc
Confidence 2 236899999999976654
No 60
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.59 E-value=0.016 Score=61.64 Aligned_cols=82 Identities=15% Similarity=0.225 Sum_probs=56.6
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
+.-++||++||.||.+.-+... +-.-.++|+|+++.+++..+.|.. +..+.++|..++. ..
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-------------~~ 316 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVH-------------EK 316 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCccccc-------------ch
Confidence 3457999999999999887653 111368999999999988877742 2334455543321 11
Q ss_pred CCCCCcccEEEccCCCcCcccCC
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMN 312 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~ 312 (487)
++ +.+|+|+..|||.+.....
T Consensus 317 ~~--~~fD~Vl~D~Pcsg~G~~~ 337 (444)
T PRK14902 317 FA--EKFDKILVDAPCSGLGVIR 337 (444)
T ss_pred hc--ccCCEEEEcCCCCCCeeec
Confidence 22 4799999999998876543
No 61
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=96.52 E-value=0.02 Score=60.73 Aligned_cols=84 Identities=18% Similarity=0.385 Sum_probs=57.2
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..-++||++||.||.+.-+... +-.-.+.|+|+++..++..+.|.. ++.+.++|...+. ..
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~-------------~~ 318 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLL-------------EL 318 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcc-------------cc
Confidence 4467999999999999887653 211268999999999988877742 3345556654431 00
Q ss_pred CC-CCCcccEEEccCCCcCcccCC
Q psy13720 290 LP-RKGEVEMLCGGPPCQGFSGMN 312 (487)
Q Consensus 290 ~p-~~~~vd~i~ggpPCq~fS~~~ 312 (487)
.+ ..+.+|.|+..+||.|.....
T Consensus 319 ~~~~~~~fD~Vl~DaPCSg~G~~~ 342 (434)
T PRK14901 319 KPQWRGYFDRILLDAPCSGLGTLH 342 (434)
T ss_pred cccccccCCEEEEeCCCCcccccc
Confidence 00 124689999999998855443
No 62
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=96.51 E-value=0.0078 Score=55.20 Aligned_cols=71 Identities=28% Similarity=0.296 Sum_probs=53.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC---CCceeccchHHHHHHhhchhhhccccccCCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP---GCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 292 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p---~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~ 292 (487)
..-+++|++||.|.++.-+...+ ..+.++|+|+.+++..+.|+. +..++.+|+.++ .++
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~--~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~---------------~~~- 74 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERA--ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKF---------------DLP- 74 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcC--CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcC---------------Ccc-
Confidence 34479999999999999988775 368999999999999998864 344566665432 011
Q ss_pred CCcccEEEccCC
Q psy13720 293 KGEVEMLCGGPP 304 (487)
Q Consensus 293 ~~~vd~i~ggpP 304 (487)
...+|.|++.+|
T Consensus 75 ~~~~d~vi~n~P 86 (169)
T smart00650 75 KLQPYKVVGNLP 86 (169)
T ss_pred ccCCCEEEECCC
Confidence 124789999888
No 63
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.066 Score=53.45 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=77.4
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCcccE
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEM 298 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~vd~ 298 (487)
+++||++|.|-+++++...+-.-.++|+|+++.|++.-+.|-....+ .++..+ .++.. . +..+.+|+
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l--~~~~~~-----~~dlf----~--~~~~~fDl 179 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL--VRVLVV-----QSDLF----E--PLRGKFDL 179 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC--ccEEEE-----eeecc----c--ccCCceeE
Confidence 89999999999999998887533899999999999998888533211 000000 00100 1 12348999
Q ss_pred EEccCCCcCcccCCccCCcccccchh---------HHHHHHHHHhh-hcCC-cEEEEecCcchhcccchhHHHHHHHHHH
Q psy13720 299 LCGGPPCQGFSGMNRFNQRQYSAFKN---------SLIVSYLSYCD-YYRP-RFFLLENVRNFVAFKNSMVLKMTMRCLT 367 (487)
Q Consensus 299 i~ggpPCq~fS~~~~~~~~~~~d~r~---------~L~~~~l~~v~-~~~P-~~~ilENV~gl~~~~~~~~~~~i~~~l~ 367 (487)
|+.-||=-+-+...........++.. ..+..++.-+. .++| -++++|= .. ...+.+.+.|.
T Consensus 180 IVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~-----g~---~q~~~v~~~~~ 251 (280)
T COG2890 180 IVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEI-----GL---TQGEAVKALFE 251 (280)
T ss_pred EEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEE-----CC---CcHHHHHHHHH
Confidence 99999988777111100000011111 24455554333 3356 4555551 11 12456777888
Q ss_pred hCCC
Q psy13720 368 QIGY 371 (487)
Q Consensus 368 ~~GY 371 (487)
+.|+
T Consensus 252 ~~~~ 255 (280)
T COG2890 252 DTGF 255 (280)
T ss_pred hcCC
Confidence 8896
No 64
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=96.45 E-value=0.026 Score=45.23 Aligned_cols=74 Identities=15% Similarity=0.269 Sum_probs=52.6
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh-----CCCCceeccchHHHHHHhhchhhhccccccCCCC
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 293 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N-----~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~ 293 (487)
+++|+.||.|+++..+...+. ..+.++|+++.+.+..+.+ ......+..|+.+.. . ...
T Consensus 1 ~ildig~G~G~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~---~~~ 64 (107)
T cd02440 1 RVLDLGCGTGALALALASGPG-ARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP------------P---EAD 64 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCC-CEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhc------------c---ccC
Confidence 579999999999999877444 5789999999988876621 122344555654431 0 123
Q ss_pred CcccEEEccCCCcCc
Q psy13720 294 GEVEMLCGGPPCQGF 308 (487)
Q Consensus 294 ~~vd~i~ggpPCq~f 308 (487)
+.+|+++..++|..+
T Consensus 65 ~~~d~i~~~~~~~~~ 79 (107)
T cd02440 65 ESFDVIISDPPLHHL 79 (107)
T ss_pred CceEEEEEccceeeh
Confidence 479999999998876
No 65
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=96.39 E-value=0.0097 Score=62.01 Aligned_cols=57 Identities=21% Similarity=0.246 Sum_probs=45.1
Q ss_pred CCeEeecccCchHHHHHHh-hcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHH
Q psy13720 217 PLRCLEVFAGAGGLSRGLD-KSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKIL 274 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~-~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~ 274 (487)
..+++|+|||+|.+++-+. ..|. .-++++|+++.|++..+.|. .+..++++|++.++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~-~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGV-EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL 120 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH
Confidence 3579999999999998874 4564 57899999999999988774 23447888887764
No 66
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=96.15 E-value=0.023 Score=57.99 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=53.4
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
+.-+++|+|||.|++..-+...|. .+.++|+++.+++.-+.|.. +..+..+|+.++
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~--~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l----------------- 242 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGA--KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL----------------- 242 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCC--eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC-----------------
Confidence 456799999999999876666664 57899999998887676642 223444554322
Q ss_pred CC-CCcccEEEccCCCcCccc
Q psy13720 291 PR-KGEVEMLCGGPPCQGFSG 310 (487)
Q Consensus 291 p~-~~~vd~i~ggpPCq~fS~ 310 (487)
|. .+.+|+|+.-|||...+.
T Consensus 243 ~~~~~~~D~Iv~dPPyg~~~~ 263 (329)
T TIGR01177 243 PLSSESVDAIATDPPYGRSTT 263 (329)
T ss_pred CcccCCCCEEEECCCCcCccc
Confidence 21 347899999999855443
No 67
>PRK01581 speE spermidine synthase; Validated
Probab=96.14 E-value=0.45 Score=49.05 Aligned_cols=153 Identities=14% Similarity=0.112 Sum_probs=96.5
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHh------------CCCCceeccchHHHHHHhhchhh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMN------------NPGCTVFVDDCNKILQRVIDNEV 282 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N------------~p~~~~~~~di~~~~~~~~~~~~ 282 (487)
.+-++|++=+|.|+....+-.. +. +-+.+||+|+..++.-+.. .|...+..+|..+++..
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v-~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~------ 222 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETV-LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS------ 222 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCC-CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh------
Confidence 4558999999988876555443 44 6789999999988876641 24556677887776422
Q ss_pred hccccccCCCCCcccEEEccCCCcCcccCCccCCcccccchhHHH-HHHHHH-hhhcCCcEEEEecCcchhcccchhHHH
Q psy13720 283 CDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLI-VSYLSY-CDYYRPRFFLLENVRNFVAFKNSMVLK 360 (487)
Q Consensus 283 ~~~~~~~~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~-~~~l~~-v~~~~P~~~ilENV~gl~~~~~~~~~~ 360 (487)
..+.+|+|+.-+| .+. +. .-+.|+ .+|++. .+.++|.-+++=+...... ....+.
T Consensus 223 ---------~~~~YDVIIvDl~-DP~---~~--------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~--~~~~~~ 279 (374)
T PRK01581 223 ---------PSSLYDVIIIDFP-DPA---TE--------LLSTLYTSELFARIATFLTEDGAFVCQSNSPAD--APLVYW 279 (374)
T ss_pred ---------cCCCccEEEEcCC-Ccc---cc--------chhhhhHHHHHHHHHHhcCCCcEEEEecCChhh--hHHHHH
Confidence 1236899998864 111 10 012232 333333 4567898776554332221 124556
Q ss_pred HHHHHHHhCCCeeEEEEEeccCCCCCCcccEEEEEEEcCCCC
Q psy13720 361 MTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEV 402 (487)
Q Consensus 361 ~i~~~l~~~GY~~~~~~l~a~~yGvPQ~R~R~fiia~~~~~~ 402 (487)
.+.+.|.+.|..+.......-.||.. ..|.+|++....
T Consensus 280 ~i~~tL~~af~~v~~y~t~vPsyg~~----WgF~~as~~~~~ 317 (374)
T PRK01581 280 SIGNTIEHAGLTVKSYHTIVPSFGTD----WGFHIAANSAYV 317 (374)
T ss_pred HHHHHHHHhCCceEEEEEecCCCCCc----eEEEEEeCCccc
Confidence 68889999999888776666677652 789999875443
No 68
>PRK03612 spermidine synthase; Provisional
Probab=96.12 E-value=0.16 Score=55.34 Aligned_cols=151 Identities=20% Similarity=0.188 Sum_probs=98.7
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC------------CCCceeccchHHHHHHhhchhhh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN------------PGCTVFVDDCNKILQRVIDNEVC 283 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~------------p~~~~~~~di~~~~~~~~~~~~~ 283 (487)
++-+++++-+|.|++..-+...+-.+.+.++|+|+..++.-+.|+ |...++.+|..++++.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~------- 369 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK------- 369 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh-------
Confidence 345799999999999887765542268899999999999888742 4556777887765421
Q ss_pred ccccccCCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHH-HHhhhcCCcEEEEecCcchhcccchhHHHHH
Q psy13720 284 DDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYL-SYCDYYRPRFFLLENVRNFVAFKNSMVLKMT 362 (487)
Q Consensus 284 ~~~~~~~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l-~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i 362 (487)
. .+.+|+|+..+|-......++ . .-.+++ .+.+.++|.-+++=|...-. .....+..+
T Consensus 370 ------~--~~~fDvIi~D~~~~~~~~~~~-------L----~t~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~i 428 (521)
T PRK03612 370 ------L--AEKFDVIIVDLPDPSNPALGK-------L----YSVEFYRLLKRRLAPDGLLVVQSTSPY--FAPKAFWSI 428 (521)
T ss_pred ------C--CCCCCEEEEeCCCCCCcchhc-------c----chHHHHHHHHHhcCCCeEEEEecCCcc--cchHHHHHH
Confidence 1 136899999876432111110 0 012233 33456789888876664321 123567789
Q ss_pred HHHHHhCCCeeEEEEEeccCCCCCCcccEEEEEEEcC
Q psy13720 363 MRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAP 399 (487)
Q Consensus 363 ~~~l~~~GY~~~~~~l~a~~yGvPQ~R~R~fiia~~~ 399 (487)
.+.|.+.|..+.....+--.|| ..-|++|++.
T Consensus 429 ~~~l~~~gf~v~~~~~~vps~g-----~w~f~~as~~ 460 (521)
T PRK03612 429 EATLEAAGLATTPYHVNVPSFG-----EWGFVLAGAG 460 (521)
T ss_pred HHHHHHcCCEEEEEEeCCCCcc-----hhHHHeeeCC
Confidence 9999999997666555556664 5668888753
No 69
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.08 E-value=0.091 Score=49.72 Aligned_cols=132 Identities=14% Similarity=0.110 Sum_probs=78.1
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccch-HHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDC-NKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di-~~~~~~~~~~~~~~~~~~~ 289 (487)
..-++||+.||.|.++..+....-...++++|+++.+++.-+.|. ++..+.++|+ ..+. ..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~-------------~~ 106 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLL-------------DM 106 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHH-------------HH
Confidence 456799999999999998865421136899999999888776653 3455677777 4331 01
Q ss_pred CCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhC
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQI 369 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~ 369 (487)
++ .+.+|+|+..+|.+.+..... .+. .....++.++ ...++|.-.++ +.......+..+++.+.+.
T Consensus 107 ~~-~~~~D~V~~~~~~p~~~~~~~--~~~--~~~~~~l~~i---~~~LkpgG~l~------i~~~~~~~~~~~~~~~~~~ 172 (202)
T PRK00121 107 FP-DGSLDRIYLNFPDPWPKKRHH--KRR--LVQPEFLALY---ARKLKPGGEIH------FATDWEGYAEYMLEVLSAE 172 (202)
T ss_pred cC-ccccceEEEECCCCCCCcccc--ccc--cCCHHHHHHH---HHHcCCCCEEE------EEcCCHHHHHHHHHHHHhC
Confidence 21 346888887665433222111 000 0112233333 34557754433 1223334567888999988
Q ss_pred CCeeE
Q psy13720 370 GYQCT 374 (487)
Q Consensus 370 GY~~~ 374 (487)
|+.+.
T Consensus 173 g~~~~ 177 (202)
T PRK00121 173 GGFLV 177 (202)
T ss_pred ccccc
Confidence 97665
No 70
>PRK14968 putative methyltransferase; Provisional
Probab=96.07 E-value=0.078 Score=48.85 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=50.7
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC-----C--CceeccchHHHHHHhhchhhhccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----G--CTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p-----~--~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
+.-++||+.||.|.++..+...|. -+.++|+++.+.+..+.|.. + ......|..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~---------------- 84 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGK--KVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE---------------- 84 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcc--eEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc----------------
Confidence 445799999999999999887764 57899999999888776642 1 2233333211
Q ss_pred cCCCCCcccEEEccCCCcC
Q psy13720 289 KLPRKGEVEMLCGGPPCQG 307 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPCq~ 307 (487)
.++ .+.+|+|+..||...
T Consensus 85 ~~~-~~~~d~vi~n~p~~~ 102 (188)
T PRK14968 85 PFR-GDKFDVILFNPPYLP 102 (188)
T ss_pred ccc-ccCceEEEECCCcCC
Confidence 122 126899999998744
No 71
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=96.07 E-value=0.0047 Score=63.72 Aligned_cols=83 Identities=18% Similarity=0.256 Sum_probs=45.1
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhch-hhhccccccCCC
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDN-EVCDDKKQKLPR 292 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~-~~~~~~~~~~p~ 292 (487)
+++|||||+|.+|+-|...+ +-+.|+|+++.|++.-+.|. .++..+..+..++....... +.....+..+.
T Consensus 199 ~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~~~~~~- 275 (352)
T PF05958_consen 199 DVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAREFNRLKGIDLK- 275 (352)
T ss_dssp EEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-GGTTGGGS-GG-
T ss_pred cEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhHHHHhhhhhhhh-
Confidence 79999999999999986544 57899999999887766553 23445555555542221110 01000011111
Q ss_pred CCcccEEEccCC
Q psy13720 293 KGEVEMLCGGPP 304 (487)
Q Consensus 293 ~~~vd~i~ggpP 304 (487)
...+|+|+.-||
T Consensus 276 ~~~~d~vilDPP 287 (352)
T PF05958_consen 276 SFKFDAVILDPP 287 (352)
T ss_dssp CTTESEEEE---
T ss_pred hcCCCEEEEcCC
Confidence 125799999999
No 72
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=96.01 E-value=0.021 Score=51.24 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=54.3
Q ss_pred CCCCeEeecccCchHHHHHHh-hcCCCcEEEEEcCcHHHHHHHHHh-----CCCCceeccchHHHHHHhhchhhhccccc
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLD-KSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~-~aG~~~~~~a~e~~~~a~~t~~~N-----~p~~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
++..++|||.||.|.+...+. ..+-..-++++|+++.+++..+.+ +++...+++|+.++ ..
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l-------------~~ 68 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDL-------------PQ 68 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCG-------------CG
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhcc-------------cc
Confidence 367889999999999999998 433223589999999999887763 34456667776542 11
Q ss_pred cCCCCCcccEEEccCCC
Q psy13720 289 KLPRKGEVEMLCGGPPC 305 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPC 305 (487)
.++ +.+|+|+...++
T Consensus 69 ~~~--~~~D~I~~~~~l 83 (152)
T PF13847_consen 69 ELE--EKFDIIISNGVL 83 (152)
T ss_dssp CSS--TTEEEEEEESTG
T ss_pred ccC--CCeeEEEEcCch
Confidence 122 589999998877
No 73
>KOG2730|consensus
Probab=95.99 E-value=0.013 Score=55.35 Aligned_cols=82 Identities=21% Similarity=0.284 Sum_probs=59.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CC-CceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PG-CTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~-~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..-.++|-|||+||-+.=|..-|. .|.++|+|+--+..-++|. |+ ...+++|+-++.....
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq----------- 160 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLK----------- 160 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHh-----------
Confidence 344589999999999999988886 6889999999888877774 22 4567888877643221
Q ss_pred CCCCCcccEEEccCCCcCcccC
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGM 311 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~ 311 (487)
+ .+.-+|++.++||--|=|.+
T Consensus 161 ~-~K~~~~~vf~sppwggp~y~ 181 (263)
T KOG2730|consen 161 A-DKIKYDCVFLSPPWGGPSYL 181 (263)
T ss_pred h-hhheeeeeecCCCCCCcchh
Confidence 1 11238899999997776654
No 74
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=95.97 E-value=0.064 Score=56.92 Aligned_cols=82 Identities=12% Similarity=0.247 Sum_probs=57.1
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCCC-----CceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPG-----CTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
+.-++||+|||.||.+.-+... +-.-.++|+|+++..++..+.|... ..+...|...+.. .
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~-------------~ 303 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTE-------------Y 303 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhh-------------h
Confidence 4457999999999998776543 1113689999999999988877532 2344556544310 0
Q ss_pred CCCCCcccEEEccCCCcCcccCC
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMN 312 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~ 312 (487)
..+.+|.|+.-+||.++-...
T Consensus 304 --~~~~fD~Vl~DaPCsg~G~~~ 324 (431)
T PRK14903 304 --VQDTFDRILVDAPCTSLGTAR 324 (431)
T ss_pred --hhccCCEEEECCCCCCCcccc
Confidence 123689999999998886654
No 75
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=95.90 E-value=0.019 Score=55.93 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=56.0
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhC------CCCceeccchHHHHHHhhchhhhccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNN------PGCTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
..-+++||.||+|.+++-+.+- .- --+.+||+++.+++.-++|. ....++++|+..+.+.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~------------ 110 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA------------ 110 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc------------
Confidence 4778999999999999988654 32 35789999998887766653 2356888999887422
Q ss_pred cCCCCCcccEEEccCCC
Q psy13720 289 KLPRKGEVEMLCGGPPC 305 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPC 305 (487)
. ....+|+|+.-||=
T Consensus 111 -~-~~~~fD~Ii~NPPy 125 (248)
T COG4123 111 -L-VFASFDLIICNPPY 125 (248)
T ss_pred -c-cccccCEEEeCCCC
Confidence 1 12369999999993
No 76
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=95.85 E-value=0.32 Score=45.68 Aligned_cols=121 Identities=12% Similarity=0.225 Sum_probs=71.9
Q ss_pred CCCeEeecccCchHHHHHHhh-cCCCcEEEEEcCcHHHHHHHHHhC------CCCceeccchHHHHHHhhchhhhccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDK-SGVARSTWAIEFDSAAATAFKMNN------PGCTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~-aG~~~~~~a~e~~~~a~~t~~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
+.-+++|+.||.|.++..+.. .|-...++++|+++.+++.-+.|. .+..++.+|..+++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~------------ 107 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT------------ 107 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh------------
Confidence 556899999999999988754 332236899999999988766552 1234455565443211
Q ss_pred cCCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcE-EEEecCcchhcccchhHHHHHHHHHH
Q psy13720 289 KLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRF-FLLENVRNFVAFKNSMVLKMTMRCLT 367 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~-~ilENV~gl~~~~~~~~~~~i~~~l~ 367 (487)
+ .+.+|.++.+.. . .+. ..++.. +.+.++|.- ++++.+ .+ ..+..++..|.
T Consensus 108 -~--~~~~D~V~~~~~--------~------~~~-~~~l~~---~~~~LkpgG~lv~~~~-~~------~~~~~~~~~l~ 159 (198)
T PRK00377 108 -I--NEKFDRIFIGGG--------S------EKL-KEIISA---SWEIIKKGGRIVIDAI-LL------ETVNNALSALE 159 (198)
T ss_pred -c--CCCCCEEEECCC--------c------ccH-HHHHHH---HHHHcCCCcEEEEEee-cH------HHHHHHHHHHH
Confidence 1 136788876421 0 011 122332 234567854 444433 22 24678888899
Q ss_pred hCCCeeEEE
Q psy13720 368 QIGYQCTFG 376 (487)
Q Consensus 368 ~~GY~~~~~ 376 (487)
++|+.+...
T Consensus 160 ~~g~~~~~~ 168 (198)
T PRK00377 160 NIGFNLEIT 168 (198)
T ss_pred HcCCCeEEE
Confidence 999865533
No 77
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=95.81 E-value=0.068 Score=56.63 Aligned_cols=83 Identities=12% Similarity=0.117 Sum_probs=55.9
Q ss_pred CCCeEeecccCchHHHHHHhh-cCCCcEEEEEcCcHHHHHHHHHhCCCCc----e--eccchHHHHHHhhchhhhccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDK-SGVARSTWAIEFDSAAATAFKMNNPGCT----V--FVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~-aG~~~~~~a~e~~~~a~~t~~~N~p~~~----~--~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
+.-+++|++||.||.+.-+.. .+ .-.++|+|+++..++..+.|..... + ..+|...+ .
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~--------------~ 302 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGP--------------S 302 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccc--------------c
Confidence 345899999999999987765 33 2368999999999998888753211 1 11221110 0
Q ss_pred cCCCCCcccEEEccCCCcCcccCCc
Q psy13720 289 KLPRKGEVEMLCGGPPCQGFSGMNR 313 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPCq~fS~~~~ 313 (487)
.....+.+|.|+..+||.|+....+
T Consensus 303 ~~~~~~~fD~VllDaPcSg~G~~~~ 327 (426)
T TIGR00563 303 QWAENEQFDRILLDAPCSATGVIRR 327 (426)
T ss_pred ccccccccCEEEEcCCCCCCccccc
Confidence 0012346999999999999887654
No 78
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=95.80 E-value=0.028 Score=58.05 Aligned_cols=55 Identities=22% Similarity=0.296 Sum_probs=44.6
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHH
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQ 275 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~ 275 (487)
+++|||||.|.+++.|.... ..+.++|+++.|++..+.|. .+..++.+|+.+++.
T Consensus 200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~ 259 (353)
T TIGR02143 200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQ 259 (353)
T ss_pred cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHH
Confidence 59999999999999886653 57899999999999988874 134578889887653
No 79
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=95.79 E-value=0.025 Score=57.22 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=54.3
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC------CCceeccchHHHHHHhhchhhhccccccCC
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
.+++|++||.|.++..+....-...+.++|+++.|++.-+.|.. ...+.++|+.+. +|
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~----------------l~ 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA----------------LP 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh----------------CC
Confidence 47999999999999988765321368899999999998888742 133445554221 22
Q ss_pred CCCcccEEEccCCCcCcc
Q psy13720 292 RKGEVEMLCGGPPCQGFS 309 (487)
Q Consensus 292 ~~~~vd~i~ggpPCq~fS 309 (487)
.+.+|+|+.-||+-+.+
T Consensus 199 -~~~fDlIvsNPPyi~~~ 215 (307)
T PRK11805 199 -GRRYDLIVSNPPYVDAE 215 (307)
T ss_pred -CCCccEEEECCCCCCcc
Confidence 23689999999987754
No 80
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=95.65 E-value=0.024 Score=56.67 Aligned_cols=79 Identities=23% Similarity=0.368 Sum_probs=54.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----C--CCceeccchHHHHHHhhchhhhccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----P--GCTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p--~~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
..-+||||||=.||+|+....+|. +-++.||.+..|++.-+.|+ . ....+.+|+.+++..+.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA-~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~---------- 191 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGA-KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK---------- 191 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTE-SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH----------
T ss_pred CCCceEEecCCCCHHHHHHHHCCC-CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh----------
Confidence 445899999999999999888886 77899999999998887764 1 12356779887764421
Q ss_pred cCCCCCcccEEEccCCCcCccc
Q psy13720 289 KLPRKGEVEMLCGGPPCQGFSG 310 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPCq~fS~ 310 (487)
..+.+|+|+.-|| .|+.
T Consensus 192 ---~~~~fD~IIlDPP--sF~k 208 (286)
T PF10672_consen 192 ---KGGRFDLIILDPP--SFAK 208 (286)
T ss_dssp ---HTT-EEEEEE--S--SEES
T ss_pred ---cCCCCCEEEECCC--CCCC
Confidence 1236999999999 5653
No 81
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=95.53 E-value=0.034 Score=51.69 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=59.5
Q ss_pred CCCeEeecccCchHHHHH--HhhcCCC-------cEEEEEcCcHHHHHHHHHhCCCCc------eeccchHHHHHHhhch
Q psy13720 216 RPLRCLEVFAGAGGLSRG--LDKSGVA-------RSTWAIEFDSAAATAFKMNNPGCT------VFVDDCNKILQRVIDN 280 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~G--l~~aG~~-------~~~~a~e~~~~a~~t~~~N~p~~~------~~~~di~~~~~~~~~~ 280 (487)
+.-.++|-|||.|++-.= +....+. ..++++|+|+.+++.-+.|..... +...|..+
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~-------- 99 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARE-------- 99 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGG--------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhh--------
Confidence 445799999999998633 3333331 017899999999998888853221 12223322
Q ss_pred hhhccccccCC-CCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhh-cCCcEEEE
Q psy13720 281 EVCDDKKQKLP-RKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDY-YRPRFFLL 344 (487)
Q Consensus 281 ~~~~~~~~~~p-~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~-~~P~~~il 344 (487)
++ ..+.+|+|+.-||= |++ -........|+..+++.+.. ++|..+++
T Consensus 100 ---------l~~~~~~~d~IvtnPPy------G~r--~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 100 ---------LPLPDGSVDAIVTNPPY------GRR--LGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp ---------GGGTTSBSCEEEEE--S------TTS--HCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred ---------cccccCCCCEEEECcch------hhh--ccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 22 34579999999994 221 11112235688888887777 67754443
No 82
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=95.42 E-value=0.62 Score=43.22 Aligned_cols=45 Identities=27% Similarity=0.176 Sum_probs=36.1
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
..-++||+.||.|.++..+...+-..-+.++|+++.+++..+.|.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~ 75 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENR 75 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 445799999999999998876542235889999999988877664
No 83
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=95.31 E-value=1.1 Score=44.50 Aligned_cols=148 Identities=10% Similarity=0.061 Sum_probs=86.9
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCC---------CceeccchHHHHHHhhchhhhcccccc
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG---------CTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~---------~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
++|+|.+|.|+++.-+...+-..-+.++|+|+..++..+.+++. ..+..+|...+++.
T Consensus 75 ~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~------------- 141 (270)
T TIGR00417 75 HVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD------------- 141 (270)
T ss_pred EEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh-------------
Confidence 89999999999887775554226789999999988887776542 33444555544321
Q ss_pred CCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHH-HHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHh
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYL-SYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQ 368 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l-~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~ 368 (487)
. .+.+|+|+..++-. .+.. .+-...+++ .+.+.++|.-+++=|...-. -....+..+.+.|.+
T Consensus 142 ~--~~~yDvIi~D~~~~-~~~~-----------~~l~~~ef~~~~~~~L~pgG~lv~~~~~~~--~~~~~~~~~~~tl~~ 205 (270)
T TIGR00417 142 T--ENTFDVIIVDSTDP-VGPA-----------ETLFTKEFYELLKKALNEDGIFVAQSESPW--IQLELITDLKRDVKE 205 (270)
T ss_pred C--CCCccEEEEeCCCC-CCcc-----------cchhHHHHHHHHHHHhCCCcEEEEcCCCcc--cCHHHHHHHHHHHHH
Confidence 1 23689998765421 1111 011112333 33456789888776654322 123566777777877
Q ss_pred CCCeeEEEEEeccCCCCCCcccEEEEEEEc
Q psy13720 369 IGYQCTFGTLQAGHFGVSQTRRRAIVLAAA 398 (487)
Q Consensus 369 ~GY~~~~~~l~a~~yGvPQ~R~R~fiia~~ 398 (487)
..=.+.......--|+.. ...|++|++
T Consensus 206 ~F~~v~~~~~~vp~~~~g---~~~~~~as~ 232 (270)
T TIGR00417 206 AFPITEYYTANIPTYPSG---LWTFTIGSK 232 (270)
T ss_pred HCCCeEEEEEEcCccccc---hhEEEEEEC
Confidence 644444444333334222 247889986
No 84
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=95.26 E-value=0.082 Score=52.83 Aligned_cols=76 Identities=14% Similarity=0.209 Sum_probs=53.8
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC-----C-CceeccchHHHHHHhhchhhhccccccCC
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-----G-CTVFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p-----~-~~~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
.+++|++||.|.+++.+....-...+.++|+++.|++.-+.|.. + ..++.+|+.+ .++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~----------------~~~ 179 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE----------------PLA 179 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc----------------cCc
Confidence 57999999999999888765421368899999999998887742 1 2334444321 111
Q ss_pred CCCcccEEEccCCCcCccc
Q psy13720 292 RKGEVEMLCGGPPCQGFSG 310 (487)
Q Consensus 292 ~~~~vd~i~ggpPCq~fS~ 310 (487)
...+|+|+.-||.-..+.
T Consensus 180 -~~~fDlIvsNPPyi~~~~ 197 (284)
T TIGR00536 180 -GQKIDIIVSNPPYIDEED 197 (284)
T ss_pred -CCCccEEEECCCCCCcch
Confidence 126899999999987763
No 85
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.98 E-value=0.082 Score=44.28 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=42.2
Q ss_pred CCeEeecccCchHHHHHHhh--cCCCcEEEEEcCcHHHHHHHHHhC------CCCceeccch
Q psy13720 217 PLRCLEVFAGAGGLSRGLDK--SGVARSTWAIEFDSAAATAFKMNN------PGCTVFVDDC 270 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~--aG~~~~~~a~e~~~~a~~t~~~N~------p~~~~~~~di 270 (487)
.-++|||=||.|.++.-+.+ .|. -+.++|+++.+++..+.|. +....+++|+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGA--RVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTS--EEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCC--EEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 34799999999999999988 665 4899999999999988887 3344566666
No 86
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=94.94 E-value=0.045 Score=57.32 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=81.1
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCC----CceeccchHHHHHHhhchhhhccccccCCCC
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG----CTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 293 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~----~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~ 293 (487)
-+++||+||.|.++..+....-...+.++|+++.|++.-+.|... ..+..+|+.+. .++..
T Consensus 253 ~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~---------------~l~~~ 317 (423)
T PRK14966 253 GRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDT---------------DMPSE 317 (423)
T ss_pred CEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhcc---------------ccccC
Confidence 479999999999998876542113688999999999988887421 23344443211 12223
Q ss_pred CcccEEEccCCCcCcccCCccCCcccccchhH---------HHHHHHHHh-hhcCCcEE-EEecCcchhcccchhHHHHH
Q psy13720 294 GEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNS---------LIVSYLSYC-DYYRPRFF-LLENVRNFVAFKNSMVLKMT 362 (487)
Q Consensus 294 ~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~---------L~~~~l~~v-~~~~P~~~-ilENV~gl~~~~~~~~~~~i 362 (487)
+.+|+|+.-||=-+-+...........+++.. .+..+++.+ +.++|.-+ ++|= |. .....+
T Consensus 318 ~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi--G~------~Q~e~V 389 (423)
T PRK14966 318 GKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH--GF------DQGAAV 389 (423)
T ss_pred CCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE--Cc------cHHHHH
Confidence 46999999998332221100000000011111 223333322 34577654 5552 22 123466
Q ss_pred HHHHHhCCCeeEEEEEeccCCCCCCcccEEEE
Q psy13720 363 MRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIV 394 (487)
Q Consensus 363 ~~~l~~~GY~~~~~~l~a~~yGvPQ~R~R~fi 394 (487)
.+.|.+.|+...... .|+ +.+.|+++
T Consensus 390 ~~ll~~~Gf~~v~v~---kDl---~G~dR~v~ 415 (423)
T PRK14966 390 RGVLAENGFSGVETL---PDL---AGLDRVTL 415 (423)
T ss_pred HHHHHHCCCcEEEEE---EcC---CCCcEEEE
Confidence 667777888643332 444 56789775
No 87
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=94.83 E-value=0.38 Score=48.90 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=37.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 261 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p 261 (487)
...++||+.||.|.++.-+...|. .+.++|+++.+++.-+.|.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~--~V~gvD~S~~ml~~A~~~~~ 187 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA--IVSASDISAAMVAEAERRAK 187 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence 456899999999999999998885 57899999999988777654
No 88
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=94.58 E-value=0.069 Score=52.59 Aligned_cols=69 Identities=26% Similarity=0.379 Sum_probs=52.4
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC---CCceeccchHHHHHHhhchhhhccccccCCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP---GCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 292 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p---~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~ 292 (487)
..-+++|+-||.|.++..+...+. -+.++|+|+..++..+.+.. +..++++|+.++ .++
T Consensus 29 ~~~~VLEIG~G~G~lt~~L~~~~~--~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~---------------~~~- 90 (258)
T PRK14896 29 DGDPVLEIGPGKGALTDELAKRAK--KVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKV---------------DLP- 90 (258)
T ss_pred CcCeEEEEeCccCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHhccCCCEEEEEeccccC---------------Cch-
Confidence 456799999999999999988864 58999999999998887753 344556665322 122
Q ss_pred CCcccEEEccCC
Q psy13720 293 KGEVEMLCGGPP 304 (487)
Q Consensus 293 ~~~vd~i~ggpP 304 (487)
++|.|++.+|
T Consensus 91 --~~d~Vv~NlP 100 (258)
T PRK14896 91 --EFNKVVSNLP 100 (258)
T ss_pred --hceEEEEcCC
Confidence 4689999988
No 89
>PRK00811 spermidine synthase; Provisional
Probab=94.56 E-value=1.3 Score=44.22 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=89.8
Q ss_pred CCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC----------CCceeccchHHHHHHhhchhhhcc
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP----------GCTVFVDDCNKILQRVIDNEVCDD 285 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p----------~~~~~~~di~~~~~~~~~~~~~~~ 285 (487)
+-++|+|-+|.|+++.-+... +. +-+.+||+|+..++..+.+++ ...++.+|...++..
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~-~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--------- 146 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSV-EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--------- 146 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCC-CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh---------
Confidence 447999999999998876554 65 678999999998888776653 345677777665421
Q ss_pred ccccCCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHH-HHhhhcCCcEEEEecCcchhcccchhHHHHHHH
Q psy13720 286 KKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYL-SYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMR 364 (487)
Q Consensus 286 ~~~~~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l-~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~ 364 (487)
..+.+|+|+.-.+ .+++... ...-.+|+ .+-+.++|.-+++=|+..... ....+..+++
T Consensus 147 ------~~~~yDvIi~D~~-dp~~~~~-----------~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~--~~~~~~~i~~ 206 (283)
T PRK00811 147 ------TENSFDVIIVDST-DPVGPAE-----------GLFTKEFYENCKRALKEDGIFVAQSGSPFY--QADEIKDMHR 206 (283)
T ss_pred ------CCCcccEEEECCC-CCCCchh-----------hhhHHHHHHHHHHhcCCCcEEEEeCCCccc--CHHHHHHHHH
Confidence 1236899887532 1222111 00112333 234566899888877654332 2346778888
Q ss_pred HHHhCCCeeEEEEEeccCCCCCCc--ccEEEEEEEc
Q psy13720 365 CLTQIGYQCTFGTLQAGHFGVSQT--RRRAIVLAAA 398 (487)
Q Consensus 365 ~l~~~GY~~~~~~l~a~~yGvPQ~--R~R~fiia~~ 398 (487)
.|.+..-.+...... +|.. -...|++|+.
T Consensus 207 tl~~~F~~v~~~~~~-----vp~~~~~~w~f~~as~ 237 (283)
T PRK00811 207 KLKEVFPIVRPYQAA-----IPTYPSGLWSFTFASK 237 (283)
T ss_pred HHHHHCCCEEEEEeE-----CCcccCchheeEEeec
Confidence 888765444432221 2332 2345788875
No 90
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=94.47 E-value=0.075 Score=52.80 Aligned_cols=56 Identities=23% Similarity=0.208 Sum_probs=45.6
Q ss_pred CCCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC--CCCceeccchHH
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN--PGCTVFVDDCNK 272 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~--p~~~~~~~di~~ 272 (487)
...-+++|+-||.|.++.-+...+. -+.|+|+|+.+++..+.|+ ++..++++|+.+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~ 98 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALK 98 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhc
Confidence 3456899999999999999988874 5789999999999988877 445567777654
No 91
>KOG1227|consensus
Probab=94.27 E-value=0.023 Score=56.17 Aligned_cols=42 Identities=21% Similarity=0.372 Sum_probs=38.0
Q ss_pred CeEeecccCchHHHH-HHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 218 LRCLEVFAGAGGLSR-GLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~-Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
=.++|||||+|=+++ =+-.||. +.++|+|++|.+++++++|-
T Consensus 196 eviVDLYAGIGYFTlpflV~agA-k~V~A~EwNp~svEaLrR~~ 238 (351)
T KOG1227|consen 196 EVIVDLYAGIGYFTLPFLVTAGA-KTVFACEWNPWSVEALRRNA 238 (351)
T ss_pred chhhhhhcccceEEeehhhccCc-cEEEEEecCHHHHHHHHHHH
Confidence 458999999999999 6788996 89999999999999999875
No 92
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=94.20 E-value=0.1 Score=51.12 Aligned_cols=55 Identities=27% Similarity=0.200 Sum_probs=44.3
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC---CCceeccchHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP---GCTVFVDDCNK 272 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p---~~~~~~~di~~ 272 (487)
+.-+++|+.||.|.++..+...+- .+.++|+|+..++..+.++. +..+.++|+..
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~ 86 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALK 86 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhc
Confidence 456899999999999999998874 48999999999999888763 34556666543
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=94.12 E-value=0.12 Score=53.01 Aligned_cols=68 Identities=25% Similarity=0.338 Sum_probs=46.6
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC----CCceeccchHHHHHHhhchhhhccccccCCCCC
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP----GCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 294 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~ 294 (487)
+++||.||.|.++.-+...+-...+.++|+++.|++.-+.|.. ...++..|+. . .+ .+
T Consensus 199 ~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~------------~----~~--~~ 260 (342)
T PRK09489 199 KVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVF------------S----DI--KG 260 (342)
T ss_pred eEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccc------------c----cc--CC
Confidence 7999999999999888765421358899999998887665532 2222222321 1 11 34
Q ss_pred cccEEEccCC
Q psy13720 295 EVEMLCGGPP 304 (487)
Q Consensus 295 ~vd~i~ggpP 304 (487)
.+|+|+..||
T Consensus 261 ~fDlIvsNPP 270 (342)
T PRK09489 261 RFDMIISNPP 270 (342)
T ss_pred CccEEEECCC
Confidence 7999999998
No 94
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=93.98 E-value=0.17 Score=48.35 Aligned_cols=75 Identities=15% Similarity=0.010 Sum_probs=49.2
Q ss_pred CCCCeEeecccCchHHHHHHhhcCC-CcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhccccc
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG~-~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
++.-++||+.||.|.++.-|....- .-.++++|+++.+++.-+.|.. +..+..+|..+.
T Consensus 76 ~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~--------------- 140 (215)
T TIGR00080 76 KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQG--------------- 140 (215)
T ss_pred CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccC---------------
Confidence 3566899999999999987765431 1248999999998887666642 233444443221
Q ss_pred cCCCCCcccEEEccCCC
Q psy13720 289 KLPRKGEVEMLCGGPPC 305 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPC 305 (487)
++..+.+|+|+..+++
T Consensus 141 -~~~~~~fD~Ii~~~~~ 156 (215)
T TIGR00080 141 -WEPLAPYDRIYVTAAG 156 (215)
T ss_pred -CcccCCCCEEEEcCCc
Confidence 1223468998877654
No 95
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=93.96 E-value=0.58 Score=50.14 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
+.-+|||+|||.||-+.-+... +-.-.++|+|+++..++..+.|.. ++.+.+.|...+. ..
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~-------------~~ 179 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFG-------------AA 179 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhh-------------hh
Confidence 4568999999999999887543 111258999999999999988743 3344555554331 11
Q ss_pred CCCCCcccEEEccCCCcCcccCCc
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMNR 313 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~~ 313 (487)
+ ++.+|.|..=.||.|--...|
T Consensus 180 ~--~~~fD~ILvDaPCSG~G~~rk 201 (470)
T PRK11933 180 L--PETFDAILLDAPCSGEGTVRK 201 (470)
T ss_pred c--hhhcCeEEEcCCCCCCccccc
Confidence 2 246899999999988766543
No 96
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=93.87 E-value=0.098 Score=54.41 Aligned_cols=43 Identities=12% Similarity=0.081 Sum_probs=35.1
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
-++|||.||.|-++.-+...+-.-.+.++|+++.|++.-+.|.
T Consensus 230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 3899999999999988876642236899999999998877764
No 97
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=93.65 E-value=1.9 Score=40.36 Aligned_cols=129 Identities=16% Similarity=0.215 Sum_probs=74.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh-----CCCCceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N-----~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
..-++||+-||.|.++..+....-...+.++|+++.+++.-+.+ ..+..+..+|+.+++.. .+
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~------------~~ 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDK------------FF 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHh------------hC
Confidence 34579999999999998887753223689999999876654433 23456777888765321 11
Q ss_pred CCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCC
Q psy13720 291 PRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIG 370 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~G 370 (487)
+ .+.+|.|+.-+|-.-+... + ..+... ...++..+ .+.++|.-.+. +.......+..+++.|...|
T Consensus 84 ~-~~~~d~v~~~~pdpw~k~~-h-~~~r~~--~~~~l~~~---~r~LkpgG~l~------~~td~~~~~~~~~~~~~~~~ 149 (194)
T TIGR00091 84 P-DGSLSKVFLNFPDPWPKKR-H-NKRRIT--QPHFLKEY---ANVLKKGGVIH------FKTDNEPLFEDMLKVLSEND 149 (194)
T ss_pred C-CCceeEEEEECCCcCCCCC-c-cccccC--CHHHHHHH---HHHhCCCCEEE------EEeCCHHHHHHHHHHHHhCC
Confidence 2 2468999888774433321 1 011110 12233333 34456654432 12233345677788887766
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=93.65 E-value=0.2 Score=54.36 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=81.5
Q ss_pred CCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC------CCceeccchHHHHHHhhchhhhcccccc
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..++||++||.|.++..+... +- ..+.++|+++.|++.-+.|.. ...+..+|+.+ .
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~-~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~----------------~ 201 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPN-ANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE----------------N 201 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCC-CeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh----------------h
Confidence 457999999999999887543 22 357899999999998888742 12233334321 1
Q ss_pred CCCCCcccEEEccCCCcCcccCCccCCc-ccccchh---------HHHHHHHHHh-hhcCCc-EEEEecCcchhcccchh
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMNRFNQR-QYSAFKN---------SLIVSYLSYC-DYYRPR-FFLLENVRNFVAFKNSM 357 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~~~~~~-~~~d~r~---------~L~~~~l~~v-~~~~P~-~~ilENV~gl~~~~~~~ 357 (487)
++ .+.+|+|+..||=-..+........ ....+.. ..+..+++-+ +.++|. .+++| -|. .
T Consensus 202 ~~-~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE--ig~---~--- 272 (506)
T PRK01544 202 IE-KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE--IGF---K--- 272 (506)
T ss_pred Cc-CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE--ECC---c---
Confidence 12 2469999999996554432110000 0001111 1233333322 244665 56667 232 1
Q ss_pred HHHHHHHHHHhCCCeeEEEEEeccCCCCCCcccEEEEE
Q psy13720 358 VLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 395 (487)
Q Consensus 358 ~~~~i~~~l~~~GY~~~~~~l~a~~yGvPQ~R~R~fii 395 (487)
....+.+.|.+.||...... .|+ +.+.|++++
T Consensus 273 q~~~v~~~~~~~g~~~~~~~---~D~---~g~~R~v~~ 304 (506)
T PRK01544 273 QEEAVTQIFLDHGYNIESVY---KDL---QGHSRVILI 304 (506)
T ss_pred hHHHHHHHHHhcCCCceEEE---ecC---CCCceEEEe
Confidence 23456666777888643332 333 456676654
No 99
>PRK04266 fibrillarin; Provisional
Probab=93.41 E-value=4 Score=39.38 Aligned_cols=147 Identities=13% Similarity=0.129 Sum_probs=79.3
Q ss_pred CCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHh---CCCCceeccchHHHHHHhhchhhhccccccC
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMN---NPGCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N---~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
++.-+++|+.||+|+++..+... + ...++|+|+++.+++....+ .++...+.+|+.... ....+
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~-----------~~~~l 138 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPE-----------RYAHV 138 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcc-----------hhhhc
Confidence 35568999999999999988764 2 23699999999877755444 234555556653210 00012
Q ss_pred CCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcch-hcc--cchhHHHHHHHHHH
Q psy13720 291 PRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNF-VAF--KNSMVLKMTMRCLT 367 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl-~~~--~~~~~~~~i~~~l~ 367 (487)
+ ..+|+|+...+ . .+....++.++ ...++|.-.++=.|+.- ..+ .....++..++.|+
T Consensus 139 ~--~~~D~i~~d~~-------~-------p~~~~~~L~~~---~r~LKpGG~lvI~v~~~~~d~~~~~~~~~~~~~~~l~ 199 (226)
T PRK04266 139 V--EKVDVIYQDVA-------Q-------PNQAEIAIDNA---EFFLKDGGYLLLAIKARSIDVTKDPKEIFKEEIRKLE 199 (226)
T ss_pred c--ccCCEEEECCC-------C-------hhHHHHHHHHH---HHhcCCCcEEEEEEecccccCcCCHHHHHHHHHHHHH
Confidence 2 35899873211 0 00011122333 33467865433323320 011 11234566778999
Q ss_pred hCCCeeEEEEEeccCCCCCCcccEEEEEEE
Q psy13720 368 QIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397 (487)
Q Consensus 368 ~~GY~~~~~~l~a~~yGvPQ~R~R~fiia~ 397 (487)
+.|+++... .+. .|..+.-+.+++.
T Consensus 200 ~aGF~~i~~-~~l----~p~~~~h~~~v~~ 224 (226)
T PRK04266 200 EGGFEILEV-VDL----EPYHKDHAAVVAR 224 (226)
T ss_pred HcCCeEEEE-EcC----CCCcCCeEEEEEE
Confidence 999985532 222 3444455555553
No 100
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=93.33 E-value=0.14 Score=53.35 Aligned_cols=58 Identities=29% Similarity=0.404 Sum_probs=43.8
Q ss_pred CCCeEeecccCch--HHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC--CC-----CceeccchHHHH
Q psy13720 216 RPLRCLEVFAGAG--GLSRGLDKSGVARSTWAIEFDSAAATAFKMNN--PG-----CTVFVDDCNKIL 274 (487)
Q Consensus 216 ~~l~~ldLFsG~G--g~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~--p~-----~~~~~~di~~~~ 274 (487)
.++++||.+||+| |+....+.+|. .-++++|+|+.|++..+.|. .+ ..+.+.|.+.++
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~-~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll 115 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGV-DKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLL 115 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSE-CEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHH
T ss_pred CCceEEeccccccHHHHHHHHHcCCC-CEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHh
Confidence 5689999999999 78888887886 78999999999999999883 11 345677998886
No 101
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=93.27 E-value=0.32 Score=47.59 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=54.3
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 295 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~ 295 (487)
..-++||+-||.|.++.-+....-...+.++|+++..++..+.+.++.....+|+..+ +..+.
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~-----------------~~~~~ 93 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASW-----------------QPPQA 93 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhcc-----------------CCCCC
Confidence 4568999999999999888765211468999999999998888887777777776432 11236
Q ss_pred ccEEEccCCC
Q psy13720 296 VEMLCGGPPC 305 (487)
Q Consensus 296 vd~i~ggpPC 305 (487)
+|+|+.....
T Consensus 94 fD~v~~~~~l 103 (258)
T PRK01683 94 LDLIFANASL 103 (258)
T ss_pred ccEEEEccCh
Confidence 8999876543
No 102
>PRK07402 precorrin-6B methylase; Provisional
Probab=93.25 E-value=0.22 Score=46.75 Aligned_cols=57 Identities=16% Similarity=0.087 Sum_probs=41.4
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNK 272 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~ 272 (487)
..-+++|++||.|.++..+...+-..-+.++|+++.+++..+.|. .+..++++|+.+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~ 101 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPE 101 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHH
Confidence 445799999999999988865421136899999999998888764 234455666543
No 103
>PRK10742 putative methyltransferase; Provisional
Probab=93.17 E-value=0.3 Score=47.66 Aligned_cols=42 Identities=19% Similarity=0.145 Sum_probs=36.9
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
..+|||+|||.|..+.=+...|+ + +.++|-++.++...+.|.
T Consensus 89 ~p~VLD~TAGlG~Da~~las~G~-~-V~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 89 LPDVVDATAGLGRDAFVLASVGC-R-VRMLERNPVVAALLDDGL 130 (250)
T ss_pred CCEEEECCCCccHHHHHHHHcCC-E-EEEEECCHHHHHHHHHHH
Confidence 45899999999999988888897 6 899999999988887764
No 104
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=93.12 E-value=0.31 Score=49.02 Aligned_cols=71 Identities=23% Similarity=0.258 Sum_probs=52.9
Q ss_pred CCCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC------CCCceeccchHHHHHHhhchhhhccccc
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN------PGCTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~------p~~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
...-+++|+-||.|.++.-+...+. -++|+|+|+.+++..+.++ +...++.+|+.++
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~--------------- 97 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT--------------- 97 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh---------------
Confidence 3456799999999999998877763 5899999999998887654 2355677776442
Q ss_pred cCCCCCcccEEEccCCC
Q psy13720 289 KLPRKGEVEMLCGGPPC 305 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPC 305 (487)
.++ .+|++++.+|=
T Consensus 98 ~~~---~~d~VvaNlPY 111 (294)
T PTZ00338 98 EFP---YFDVCVANVPY 111 (294)
T ss_pred ccc---ccCEEEecCCc
Confidence 112 46889988883
No 105
>PLN02823 spermine synthase
Probab=92.98 E-value=7.3 Score=39.97 Aligned_cols=151 Identities=13% Similarity=0.137 Sum_probs=91.9
Q ss_pred CeEeecccCchHHHHHHhh-cCCCcEEEEEcCcHHHHHHHHHhCC---------CCceeccchHHHHHHhhchhhhcccc
Q psy13720 218 LRCLEVFAGAGGLSRGLDK-SGVARSTWAIEFDSAAATAFKMNNP---------GCTVFVDDCNKILQRVIDNEVCDDKK 287 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~-aG~~~~~~a~e~~~~a~~t~~~N~p---------~~~~~~~di~~~~~~~~~~~~~~~~~ 287 (487)
-++|-|=.|.|++..-+.. .+. +-+.+||+|+..++.-+.+++ ...++.+|...+++.
T Consensus 105 k~VLiiGgG~G~~~re~l~~~~~-~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----------- 172 (336)
T PLN02823 105 KTVFIMGGGEGSTAREVLRHKTV-EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----------- 172 (336)
T ss_pred CEEEEECCCchHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh-----------
Confidence 4577777777766654433 444 678999999999988887664 345677787776522
Q ss_pred ccCCCCCcccEEEccCCCcCcccCCccCCcccccchhHH-HHHHHH--HhhhcCCcEEEEecCcchhcccchhHHHHHHH
Q psy13720 288 QKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSL-IVSYLS--YCDYYRPRFFLLENVRNFVAFKNSMVLKMTMR 364 (487)
Q Consensus 288 ~~~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L-~~~~l~--~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~ 364 (487)
..+.+|+|+.-.+ .+.+. +. . ..| -.+|++ +.+.++|.-+++=|+...........+..+++
T Consensus 173 ----~~~~yDvIi~D~~-dp~~~-~~----~-----~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~ 237 (336)
T PLN02823 173 ----RDEKFDVIIGDLA-DPVEG-GP----C-----YQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYN 237 (336)
T ss_pred ----CCCCccEEEecCC-Ccccc-Cc----c-----hhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHH
Confidence 1236899988753 11111 00 0 012 124443 34678999988877643211123346777888
Q ss_pred HHHhCCCeeEEEEEeccCCCCCCcccEEEEEEEcC
Q psy13720 365 CLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAP 399 (487)
Q Consensus 365 ~l~~~GY~~~~~~l~a~~yGvPQ~R~R~fiia~~~ 399 (487)
.|.+..-.+......--.||.. .-|++|++.
T Consensus 238 tl~~vF~~v~~y~~~vPsf~~~----w~f~~aS~~ 268 (336)
T PLN02823 238 TLRQVFKYVVPYTAHVPSFADT----WGWVMASDH 268 (336)
T ss_pred HHHHhCCCEEEEEeecCCCCCc----eEEEEEeCC
Confidence 8887665565555555556542 678888863
No 106
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=92.94 E-value=0.28 Score=47.82 Aligned_cols=54 Identities=15% Similarity=0.204 Sum_probs=43.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCN 271 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~ 271 (487)
..-++||+=||.|.++.-+...|. .+.++|+++.+++.-+.+.+.....++|+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~ 95 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS--QVTALDLSPPMLAQARQKDAADHYLAGDIE 95 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCCEEEcCcc
Confidence 345799999999999988877774 689999999999988888765555666654
No 107
>PLN02672 methionine S-methyltransferase
Probab=92.93 E-value=0.21 Score=58.27 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=36.4
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
..+++||.||.|.+++.+...+-...+.|+|+++.|++.-+.|.
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 34799999999999999876542246899999999999888774
No 108
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=92.90 E-value=0.25 Score=46.93 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=43.9
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCCCCceeccch
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDC 270 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di 270 (487)
+.-++||+=||.|-++..|... +. ..+.++|+++.+++..+.++++..+..+|+
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~-~~v~giDiS~~~l~~A~~~~~~~~~~~~d~ 97 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPF-KHIYGVEINEYAVEKAKAYLPNINIIQGSL 97 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCC-CeEEEEECCHHHHHHHHhhCCCCcEEEeec
Confidence 4457999999999999999775 33 368999999999999998888766665553
No 109
>KOG2904|consensus
Probab=92.72 E-value=0.25 Score=48.53 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=51.8
Q ss_pred CCCeEeecccCchHHHHHHh-hcCCCcEEEEEcCcHHHHHHHHHhCCC------CceeccchHHHHHHhhchhhhccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLD-KSGVARSTWAIEFDSAAATAFKMNNPG------CTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~-~aG~~~~~~a~e~~~~a~~t~~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
.+..++|++||.|.+|+++- ..+ .-++.|+|.++.|+..-..|... ..+++.+. .++... ..
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m--------e~d~~~--~~ 216 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM--------ESDASD--EH 216 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc--------cccccc--cc
Confidence 34479999999999999974 334 46899999999999988777421 22222211 111111 11
Q ss_pred cCCCCCcccEEEccCCCc
Q psy13720 289 KLPRKGEVEMLCGGPPCQ 306 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPCq 306 (487)
.++ .|..|+|+.-||--
T Consensus 217 ~l~-~~~~dllvsNPPYI 233 (328)
T KOG2904|consen 217 PLL-EGKIDLLVSNPPYI 233 (328)
T ss_pred ccc-cCceeEEecCCCcc
Confidence 122 36899999999953
No 110
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=92.60 E-value=0.37 Score=49.13 Aligned_cols=42 Identities=17% Similarity=0.298 Sum_probs=36.3
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
...++||+-||.|.++.-|...|. .++++|.++..++..+.+
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~--~V~GID~s~~~i~~Ar~~ 172 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA--TVTGVDAVDKNVKIARLH 172 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC--EEEEEeCCHHHHHHHHHH
Confidence 456899999999999999988885 578999999998877755
No 111
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=92.57 E-value=1.4 Score=45.53 Aligned_cols=85 Identities=19% Similarity=0.278 Sum_probs=58.8
Q ss_pred CCCeEeecccCchHHHHHHhhcCC--CcEEEEEcCcHHHHHHHHHhCCC-----CceeccchHHHHHHhhchhhhccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGV--ARSTWAIEFDSAAATAFKMNNPG-----CTVFVDDCNKILQRVIDNEVCDDKKQ 288 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~--~~~~~a~e~~~~a~~t~~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~ 288 (487)
..-+|||+||+.||=+.=+.+..- ..+++|+|+++.-++..+.|... +.+.+.|-..+ ..
T Consensus 156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~-------------~~ 222 (355)
T COG0144 156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL-------------AE 222 (355)
T ss_pred CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc-------------cc
Confidence 457899999999998877766542 13579999999999999988532 23444443221 11
Q ss_pred cCCCCCcccEEEccCCCcCcccCCc
Q psy13720 289 KLPRKGEVEMLCGGPPCQGFSGMNR 313 (487)
Q Consensus 289 ~~p~~~~vd~i~ggpPCq~fS~~~~ 313 (487)
..+..+.+|-|..=+||.|.-...|
T Consensus 223 ~~~~~~~fD~iLlDaPCSg~G~irr 247 (355)
T COG0144 223 LLPGGEKFDRILLDAPCSGTGVIRR 247 (355)
T ss_pred cccccCcCcEEEECCCCCCCccccc
Confidence 1222224899999999999887754
No 112
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=92.47 E-value=0.34 Score=45.08 Aligned_cols=57 Identities=9% Similarity=0.016 Sum_probs=39.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh-----CCCCceeccchHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVDDCNK 272 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N-----~p~~~~~~~di~~ 272 (487)
...+++|+-||.|.++.-+...+-...+.++|.++.+++..+.| ..+..++++|+.+
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~ 103 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED 103 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh
Confidence 35689999999998888775544213589999999877655543 2234556666543
No 113
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=92.38 E-value=0.31 Score=46.45 Aligned_cols=44 Identities=23% Similarity=0.250 Sum_probs=37.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 261 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p 261 (487)
...++||+.||.|.++.-+...+. .+.++|+++.++..-+.+.+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~--~v~gvD~s~~~i~~a~~~~~ 98 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGA--IVKAVDISEQMVQMARNRAQ 98 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHHHH
Confidence 567899999999999999987764 67899999999988776653
No 114
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=92.23 E-value=0.8 Score=44.11 Aligned_cols=136 Identities=16% Similarity=0.201 Sum_probs=93.1
Q ss_pred CCCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-------CCCceeccchHHHHHHhhchhhhcccc
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-------PGCTVFVDDCNKILQRVIDNEVCDDKK 287 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-------p~~~~~~~di~~~~~~~~~~~~~~~~~ 287 (487)
++.-+|||-|-|.|=.+.-.-..|. ..+..+|.|+..++.-..|= +...++.+|+.++.+.
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA-~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~----------- 200 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGA-IHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD----------- 200 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCC-cEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc-----------
Confidence 4678999999999988888778886 57899999998877655551 1335777888776432
Q ss_pred ccCCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchh-cccchhHHHHHHHHH
Q psy13720 288 QKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFV-AFKNSMVLKMTMRCL 366 (487)
Q Consensus 288 ~~~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~-~~~~~~~~~~i~~~l 366 (487)
++ ..++|+|+--|| -||.|+. -+ .-.++.++.|++ +|.-=++-=|-+=- ..++.+..+.+.+.|
T Consensus 201 --~~-D~sfDaIiHDPP--RfS~Age----LY---seefY~El~RiL---krgGrlFHYvG~Pg~ryrG~d~~~gVa~RL 265 (287)
T COG2521 201 --FD-DESFDAIIHDPP--RFSLAGE----LY---SEEFYRELYRIL---KRGGRLFHYVGNPGKRYRGLDLPKGVAERL 265 (287)
T ss_pred --CC-ccccceEeeCCC--ccchhhh----Hh---HHHHHHHHHHHc---CcCCcEEEEeCCCCcccccCChhHHHHHHH
Confidence 22 126899999999 6887763 12 235778877774 55433333332211 224456778899999
Q ss_pred HhCCCeeEEEE
Q psy13720 367 TQIGYQCTFGT 377 (487)
Q Consensus 367 ~~~GY~~~~~~ 377 (487)
.+.|+++-..+
T Consensus 266 r~vGF~~v~~~ 276 (287)
T COG2521 266 RRVGFEVVKKV 276 (287)
T ss_pred HhcCceeeeee
Confidence 99999965444
No 115
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=92.10 E-value=0.51 Score=44.41 Aligned_cols=42 Identities=19% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
...++||+-||.|.++.-|.+.|+ .+.|+|+++.+++..+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~--~V~gvD~S~~~i~~a~~~ 71 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGF--DVTAWDKNPMSIANLERI 71 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC--EEEEEeCCHHHHHHHHHH
Confidence 456899999999999999988886 578999999988876654
No 116
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=91.94 E-value=0.69 Score=45.29 Aligned_cols=56 Identities=20% Similarity=0.233 Sum_probs=44.1
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC------CCceeccchHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKI 273 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p------~~~~~~~di~~~ 273 (487)
.+.++||+-||.|.++..|...|. -+.++|+++.+++..+.+.. ...++++|+.++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~--~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l 105 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH--QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDI 105 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHH
Confidence 457899999999999999998885 57899999999887776542 334566677654
No 117
>KOG3191|consensus
Probab=91.87 E-value=3.1 Score=38.62 Aligned_cols=135 Identities=21% Similarity=0.156 Sum_probs=79.8
Q ss_pred CCeEeecccCchHHHHHHhhc--CCCcEEEEEcCcHHHHHH----HHHhCCCCceeccchHHHHHHhhchhhhccccccC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKS--GVARSTWAIEFDSAAATA----FKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~a--G~~~~~~a~e~~~~a~~t----~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
..-++++=||.|-.+.-|.+. +. -+.+|.|+++.|+++ .+.|--...++..|...-+
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~-~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l---------------- 106 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQ-ALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGL---------------- 106 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCC-ceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhh----------------
Confidence 344999999999988877653 33 578999999999875 3334333455555654321
Q ss_pred CCCCcccEEEccCCCcCccc-------CCccCCcccccchhHHHHHHHHHhh-hcCCcEEEEecCcchhcccchhHHHHH
Q psy13720 291 PRKGEVEMLCGGPPCQGFSG-------MNRFNQRQYSAFKNSLIVSYLSYCD-YYRPRFFLLENVRNFVAFKNSMVLKMT 362 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~-------~~~~~~~~~~d~r~~L~~~~l~~v~-~~~P~~~ilENV~gl~~~~~~~~~~~i 362 (487)
..+.||+++--||--+-|- ..-.. .+..+-| ..+..++..|. .+.|+-++.=+.- .. ...+.|
T Consensus 107 -~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~-aGG~~Gr-~v~d~ll~~v~~iLSp~Gv~Ylv~~---~~---N~p~ei 177 (209)
T KOG3191|consen 107 -RNESVDVLVFNPPYVPTSDEEIGDEGIASAW-AGGKDGR-EVTDRLLPQVPDILSPRGVFYLVAL---RA---NKPKEI 177 (209)
T ss_pred -ccCCccEEEECCCcCcCCcccchhHHHHHHH-hcCcchH-HHHHHHHhhhhhhcCcCceEEeeeh---hh---cCHHHH
Confidence 1258999999998665552 11000 0111222 22344444444 2356655554331 11 224678
Q ss_pred HHHHHhCCCeeEEEE
Q psy13720 363 MRCLTQIGYQCTFGT 377 (487)
Q Consensus 363 ~~~l~~~GY~~~~~~ 377 (487)
+..++..||.++...
T Consensus 178 ~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 178 LKILEKKGYGVRIAM 192 (209)
T ss_pred HHHHhhcccceeEEE
Confidence 888899999876543
No 118
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=91.76 E-value=0.21 Score=54.42 Aligned_cols=83 Identities=14% Similarity=0.112 Sum_probs=52.0
Q ss_pred CCCeEeecccCchHHHHHHhhc--------CCCcEEEEEcCcHHHHHHHHHhCCCC-----ceeccchHHHHHHhhchhh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS--------GVARSTWAIEFDSAAATAFKMNNPGC-----TVFVDDCNKILQRVIDNEV 282 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a--------G~~~~~~a~e~~~~a~~t~~~N~p~~-----~~~~~di~~~~~~~~~~~~ 282 (487)
...+++|.+||+|++..++... ++...++++|+|+.|+...+.|.... .+.++|... . .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~---~-----~ 102 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLS---Y-----V 102 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccc---c-----c
Confidence 5678999999999998887432 12235799999999999887774222 122222110 0 0
Q ss_pred hccccccCCCCCcccEEEccCCCcCcc
Q psy13720 283 CDDKKQKLPRKGEVEMLCGGPPCQGFS 309 (487)
Q Consensus 283 ~~~~~~~~p~~~~vd~i~ggpPCq~fS 309 (487)
..... ...+.+|+|+|-||=-...
T Consensus 103 ~~~~~---~~~~~fD~IIgNPPy~~~k 126 (524)
T TIGR02987 103 LLNIE---SYLDLFDIVITNPPYGRLK 126 (524)
T ss_pred ccccc---cccCcccEEEeCCCccccC
Confidence 00000 1134799999999977654
No 119
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=91.71 E-value=0.62 Score=44.62 Aligned_cols=73 Identities=11% Similarity=0.169 Sum_probs=48.2
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..-++||+.||.|.++.-+... |-...+.++|+++..++..+.|.. +...+.+|+.++ .
T Consensus 45 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~---------------~ 109 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMEL---------------P 109 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcC---------------C
Confidence 4568999999999998877654 321258999999988877665542 334455554321 1
Q ss_pred CCCCCcccEEEccCC
Q psy13720 290 LPRKGEVEMLCGGPP 304 (487)
Q Consensus 290 ~p~~~~vd~i~ggpP 304 (487)
++ .+.+|+|+.+..
T Consensus 110 ~~-~~~fD~V~~~~~ 123 (231)
T TIGR02752 110 FD-DNSFDYVTIGFG 123 (231)
T ss_pred CC-CCCccEEEEecc
Confidence 12 347899987644
No 120
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=91.52 E-value=0.52 Score=45.53 Aligned_cols=46 Identities=28% Similarity=0.304 Sum_probs=40.5
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGC 263 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~ 263 (487)
..+++||+=||.|-+|.-+.+.|. .|.++|+++.++++-+..-...
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~Ga--~VtgiD~se~~I~~Ak~ha~e~ 104 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLGA--SVTGIDASEKPIEVAKLHALES 104 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCCC--eeEEecCChHHHHHHHHhhhhc
Confidence 789999999999999999999996 6889999999999887655443
No 121
>PTZ00146 fibrillarin; Provisional
Probab=90.89 E-value=11 Score=37.97 Aligned_cols=151 Identities=13% Similarity=0.147 Sum_probs=83.9
Q ss_pred cCCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHH---hCCCCceeccchHHHHHHhhchhhhcccccc
Q psy13720 214 IARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKM---NNPGCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 214 ~~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~---N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
+++..+||||.||.|+++.-+... |-.-.|+|+|+++.+.+-+.. ..++...+.+|+..... . .
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~----------y--~ 197 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQK----------Y--R 197 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhh----------h--h
Confidence 456678999999999999887654 322369999999865432222 12455666666542100 0 0
Q ss_pred CCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCc--EEEEecCcchhcc-cchhHHHHHHHHH
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPR--FFLLENVRNFVAF-KNSMVLKMTMRCL 366 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~--~~ilENV~gl~~~-~~~~~~~~i~~~l 366 (487)
++ .+.+|+|+.... | . |....++.+. -..++|. ++|...-..+-+. .....|..-++.|
T Consensus 198 ~~-~~~vDvV~~Dva-~------------p-dq~~il~~na---~r~LKpGG~~vI~ika~~id~g~~pe~~f~~ev~~L 259 (293)
T PTZ00146 198 ML-VPMVDVIFADVA-Q------------P-DQARIVALNA---QYFLKNGGHFIISIKANCIDSTAKPEVVFASEVQKL 259 (293)
T ss_pred cc-cCCCCEEEEeCC-C------------c-chHHHHHHHH---HHhccCCCEEEEEEeccccccCCCHHHHHHHHHHHH
Confidence 11 126899866542 1 1 1112233332 2346774 3332322222111 1123344446889
Q ss_pred HhCCCeeEEEEEeccCCCCCCcccEEEEEEEcC
Q psy13720 367 TQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAP 399 (487)
Q Consensus 367 ~~~GY~~~~~~l~a~~yGvPQ~R~R~fiia~~~ 399 (487)
++.||+....+ +. -|-.|...+++|..+
T Consensus 260 ~~~GF~~~e~v-~L----~Py~~~h~~v~~~~~ 287 (293)
T PTZ00146 260 KKEGLKPKEQL-TL----EPFERDHAVVIGVYR 287 (293)
T ss_pred HHcCCceEEEE-ec----CCccCCcEEEEEEEc
Confidence 99999865433 22 577899999998753
No 122
>PLN02366 spermidine synthase
Probab=90.67 E-value=19 Score=36.46 Aligned_cols=151 Identities=14% Similarity=0.157 Sum_probs=91.1
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC---------CCceeccchHHHHHHhhchhhhcc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP---------GCTVFVDDCNKILQRVIDNEVCDD 285 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p---------~~~~~~~di~~~~~~~~~~~~~~~ 285 (487)
.+-++|++=+|.|++..-+... +. +-+..+|+|+..++.-+..+| ...++.+|...+++.
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v-~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~--------- 160 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSV-EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN--------- 160 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCC-CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh---------
Confidence 3557999999999988877654 34 678899999988887776654 355667777665422
Q ss_pred ccccCCCCCcccEEEccCCCcCcccCCccCCcccccchhHH-HHHHHH-HhhhcCCcEEEEecCcchhcccchhHHHHHH
Q psy13720 286 KKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSL-IVSYLS-YCDYYRPRFFLLENVRNFVAFKNSMVLKMTM 363 (487)
Q Consensus 286 ~~~~~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L-~~~~l~-~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~ 363 (487)
.+ .+.+|+|+.-.+- +.+.+ ..| -.+|++ +.+.++|.-+++=|...... ....++.++
T Consensus 161 ----~~-~~~yDvIi~D~~d-p~~~~------------~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~--~~~~~~~i~ 220 (308)
T PLN02366 161 ----AP-EGTYDAIIVDSSD-PVGPA------------QELFEKPFFESVARALRPGGVVCTQAESMWL--HMDLIEDLI 220 (308)
T ss_pred ----cc-CCCCCEEEEcCCC-CCCch------------hhhhHHHHHHHHHHhcCCCcEEEECcCCccc--chHHHHHHH
Confidence 11 2368988864321 11111 111 123333 34567999998877655332 235677888
Q ss_pred HHHHhCC-CeeEEEEEeccCCCCCCcccEEEEEEEcC
Q psy13720 364 RCLTQIG-YQCTFGTLQAGHFGVSQTRRRAIVLAAAP 399 (487)
Q Consensus 364 ~~l~~~G-Y~~~~~~l~a~~yGvPQ~R~R~fiia~~~ 399 (487)
+.|.+.. ..+.+....---|+. -..-|++|++.
T Consensus 221 ~tl~~~F~~~v~~~~~~vPsy~~---g~w~f~~as~~ 254 (308)
T PLN02366 221 AICRETFKGSVNYAWTTVPTYPS---GVIGFVLCSKE 254 (308)
T ss_pred HHHHHHCCCceeEEEecCCCcCC---CceEEEEEECC
Confidence 8888776 344333222222311 34668888875
No 123
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=90.59 E-value=0.49 Score=47.48 Aligned_cols=127 Identities=15% Similarity=0.133 Sum_probs=78.0
Q ss_pred CCCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCC
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 294 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~ 294 (487)
++..++||+=||.|-|+.+....|. +-+.|+|+|+.|+++-+.|.--..+-. .+. + ........+..+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~-~~~-----~-----~~~~~~~~~~~~ 228 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVEL-LVQ-----A-----KGFLLLEVPENG 228 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCch-hhh-----c-----ccccchhhcccC
Confidence 4788999999999999999999997 789999999999999888742111110 000 0 001111223345
Q ss_pred cccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCCeeE
Q psy13720 295 EVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCT 374 (487)
Q Consensus 295 ~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~ 374 (487)
.+|+|++-- ..+.-..|.- .+...++|--.++ ..|++.. -...+.+.+.+.|..+.
T Consensus 229 ~~DvIVANI---------------LA~vl~~La~---~~~~~lkpgg~lI--lSGIl~~----q~~~V~~a~~~~gf~v~ 284 (300)
T COG2264 229 PFDVIVANI---------------LAEVLVELAP---DIKRLLKPGGRLI--LSGILED----QAESVAEAYEQAGFEVV 284 (300)
T ss_pred cccEEEehh---------------hHHHHHHHHH---HHHHHcCCCceEE--EEeehHh----HHHHHHHHHHhCCCeEe
Confidence 788887421 1122223333 3445567744333 2566653 24667788888888876
Q ss_pred EEE
Q psy13720 375 FGT 377 (487)
Q Consensus 375 ~~~ 377 (487)
...
T Consensus 285 ~~~ 287 (300)
T COG2264 285 EVL 287 (300)
T ss_pred EEE
Confidence 554
No 124
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=90.56 E-value=2 Score=46.10 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=86.9
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC---CCCceeccchHHHHHHhhchhhhccccccCCCC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 293 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~---p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~ 293 (487)
.-++|||.||.|.++..|...+ ..+.++|+++.+++.-+... ++..+++.|+... ...+| .
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~-------------~~~~~-~ 101 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSP-------------DLNIS-D 101 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccc-------------ccCCC-C
Confidence 3479999999999999998775 36799999999887544322 2344455554321 00122 3
Q ss_pred CcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCc--EEEEecCcchh-------cccchhHHHHHHH
Q psy13720 294 GEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPR--FFLLENVRNFV-------AFKNSMVLKMTMR 364 (487)
Q Consensus 294 ~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~--~~ilENV~gl~-------~~~~~~~~~~i~~ 364 (487)
+.+|+|+...++.-++. +....++.++.++ ++|. +++.||+..-- ..........+.+
T Consensus 102 ~~fD~I~~~~~l~~l~~----------~~~~~~l~~~~r~---Lk~gG~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (475)
T PLN02336 102 GSVDLIFSNWLLMYLSD----------KEVENLAERMVKW---LKVGGYIFFRESCFHQSGDSKRKNNPTHYREPRFYTK 168 (475)
T ss_pred CCEEEEehhhhHHhCCH----------HHHHHHHHHHHHh---cCCCeEEEEEeccCCCCCcccccCCCCeecChHHHHH
Confidence 47999998776543321 1123344444443 4664 55667763211 0001112445555
Q ss_pred HHHhCCCeeE------EEEEec---cCCCCCCcccEEEEEEE
Q psy13720 365 CLTQIGYQCT------FGTLQA---GHFGVSQTRRRAIVLAA 397 (487)
Q Consensus 365 ~l~~~GY~~~------~~~l~a---~~yGvPQ~R~R~fiia~ 397 (487)
.|.+.|++.. ...+.+ ..|..|-+-.|+++-..
T Consensus 169 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (475)
T PLN02336 169 VFKECHTRDEDGNSFELSLVGCKCIGAYVKNKKNQNQICWLW 210 (475)
T ss_pred HHHHheeccCCCCEEEEEEEEeechhhhhhccCCcceEEEEE
Confidence 6666554432 222211 45888999889887654
No 125
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=90.44 E-value=0.5 Score=47.29 Aligned_cols=44 Identities=25% Similarity=0.275 Sum_probs=38.3
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
+.-++||+.||.|.++..+...|. ..+.++|+++.|++.-+.|.
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~-~~V~avDid~~al~~a~~n~ 202 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGA-AKVVGIDIDPLAVESARKNA 202 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHH
Confidence 456899999999999999988886 68999999999998877764
No 126
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.40 E-value=0.52 Score=46.11 Aligned_cols=117 Identities=16% Similarity=0.152 Sum_probs=71.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCC-C
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK-G 294 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~-~ 294 (487)
+.-+++|+-||.|.++..+...|. ..+.++|+++.+++.-+.|.....+ ...+ .++.. .
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~~~-~~~~------------------~~~~~~~ 178 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELNGV-ELNV------------------YLPQGDL 178 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHcCC-CceE------------------EEccCCC
Confidence 567899999999999999988886 5689999999999887777532111 0000 01110 1
Q ss_pred cccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCCeeE
Q psy13720 295 EVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCT 374 (487)
Q Consensus 295 ~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~ 374 (487)
.+|+|++... .+....++. .+.+.++|.-.++ +.|+.. .....+...|.+.|+.+.
T Consensus 179 ~fD~Vvani~---------------~~~~~~l~~---~~~~~LkpgG~li--lsgi~~----~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 179 KADVIVANIL---------------ANPLLELAP---DLARLLKPGGRLI--LSGILE----EQADEVLEAYEEAGFTLD 234 (250)
T ss_pred CcCEEEEcCc---------------HHHHHHHHH---HHHHhcCCCcEEE--EEECcH----hhHHHHHHHHHHCCCEEE
Confidence 4788875321 011112222 3455677865444 234432 235677888999999876
Q ss_pred EE
Q psy13720 375 FG 376 (487)
Q Consensus 375 ~~ 376 (487)
..
T Consensus 235 ~~ 236 (250)
T PRK00517 235 EV 236 (250)
T ss_pred EE
Confidence 43
No 127
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=90.29 E-value=0.89 Score=43.28 Aligned_cols=75 Identities=19% Similarity=0.246 Sum_probs=52.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC-CCceeccchHHHHHHhhchhhhccccccCCCCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP-GCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 294 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p-~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~ 294 (487)
.+.++||+-||.|.++.-+...+....+.++|+++..++..+.+.+ ....+..|+.++ .++ .+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~---------------~~~-~~ 97 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKL---------------PLE-DS 97 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhC---------------CCC-CC
Confidence 4578999999999999988887753457999999998877766654 234455555432 111 24
Q ss_pred cccEEEccCCCc
Q psy13720 295 EVEMLCGGPPCQ 306 (487)
Q Consensus 295 ~vd~i~ggpPCq 306 (487)
.+|+|+....++
T Consensus 98 ~fD~vi~~~~l~ 109 (240)
T TIGR02072 98 SFDLIVSNLALQ 109 (240)
T ss_pred ceeEEEEhhhhh
Confidence 689998765443
No 128
>PRK05785 hypothetical protein; Provisional
Probab=90.04 E-value=2.7 Score=40.44 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=59.2
Q ss_pred CCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCC-CC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR-KG 294 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~-~~ 294 (487)
.-++||+-||.|-++.-+... |. -+.++|+++..++.-+... ...++|... +|. .+
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~~~--~v~gvD~S~~Ml~~a~~~~---~~~~~d~~~-----------------lp~~d~ 109 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVFKY--YVVALDYAENMLKMNLVAD---DKVVGSFEA-----------------LPFRDK 109 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhcCC--EEEEECCCHHHHHHHHhcc---ceEEechhh-----------------CCCCCC
Confidence 458999999999999888776 43 6899999999988755432 223344322 222 34
Q ss_pred cccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEe
Q psy13720 295 EVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLE 345 (487)
Q Consensus 295 ~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilE 345 (487)
.+|+|+.+.-.+ + ..| ...++.++.|++ +|...++|
T Consensus 110 sfD~v~~~~~l~-----~------~~d-~~~~l~e~~RvL---kp~~~ile 145 (226)
T PRK05785 110 SFDVVMSSFALH-----A------SDN-IEKVIAEFTRVS---RKQVGFIA 145 (226)
T ss_pred CEEEEEecChhh-----c------cCC-HHHHHHHHHHHh---cCceEEEE
Confidence 799998865321 1 112 234566666654 57666776
No 129
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=89.90 E-value=5.2 Score=40.92 Aligned_cols=141 Identities=20% Similarity=0.200 Sum_probs=83.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCC-----ceecc-chHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGC-----TVFVD-DCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~-----~~~~~-di~~~~~~~~~~~~~~~~~~~ 289 (487)
+.=.++|=|||.||+-.-...-|. -+.++|+|...++--+.|...- .+... |+ ..
T Consensus 197 ~G~~vlDPFcGTGgiLiEagl~G~--~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da-----------------~~ 257 (347)
T COG1041 197 RGELVLDPFCGTGGILIEAGLMGA--RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDA-----------------TN 257 (347)
T ss_pred cCCEeecCcCCccHHHHhhhhcCc--eEeecchHHHHHhhhhhhhhhhCcCceeEEEeccc-----------------cc
Confidence 334699999999999776666676 4678899999988878886321 11111 22 22
Q ss_pred CCCCC-cccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhc-CCcEEEEecCcchhcccchhHHHHHHHHHH
Q psy13720 290 LPRKG-EVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY-RPRFFLLENVRNFVAFKNSMVLKMTMRCLT 367 (487)
Q Consensus 290 ~p~~~-~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~-~P~~~ilENV~gl~~~~~~~~~~~i~~~l~ 367 (487)
+|.++ .+|-|+.-||= |-|... ....-..|+..+++..... ++.-++.= ... ......+.
T Consensus 258 lpl~~~~vdaIatDPPY-Grst~~------~~~~l~~Ly~~~le~~~evLk~gG~~vf-----~~p------~~~~~~~~ 319 (347)
T COG1041 258 LPLRDNSVDAIATDPPY-GRSTKI------KGEGLDELYEEALESASEVLKPGGRIVF-----AAP------RDPRHELE 319 (347)
T ss_pred CCCCCCccceEEecCCC-Cccccc------ccccHHHHHHHHHHHHHHHhhcCcEEEE-----ecC------CcchhhHh
Confidence 33333 49999999994 222211 1122356777776655443 44222211 111 23455677
Q ss_pred hCCCeeEEEEEeccCCCCCCcccEEEEEEE
Q psy13720 368 QIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397 (487)
Q Consensus 368 ~~GY~~~~~~l~a~~yGvPQ~R~R~fiia~ 397 (487)
++||.+...+-.- +-++=.|.|.+..
T Consensus 320 ~~~f~v~~~~~~~----~H~sLtR~i~v~~ 345 (347)
T COG1041 320 ELGFKVLGRFTMR----VHGSLTRVIYVVR 345 (347)
T ss_pred hcCceEEEEEEEe----ecCceEEEEEEEe
Confidence 8899876655433 4455567777654
No 130
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=89.89 E-value=0.72 Score=43.72 Aligned_cols=44 Identities=18% Similarity=0.027 Sum_probs=35.4
Q ss_pred CCCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
++..++||+.||.|.++.-+...+. .+.++|+++.+++.-+.|+
T Consensus 77 ~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~ 120 (212)
T PRK00312 77 KPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRL 120 (212)
T ss_pred CCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHH
Confidence 4567899999999999887766542 5889999999887776664
No 131
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=89.85 E-value=2.7 Score=40.88 Aligned_cols=43 Identities=9% Similarity=0.086 Sum_probs=34.0
Q ss_pred CCCeEeecccCchHHHHHHhh----cCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDK----SGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~----aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
..-++||+-||.|.++..+.. .+. .+.++|+++.+++.-+.+.
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~--~v~gvD~S~~ml~~A~~~~ 102 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNC--KIIAIDNSPAMIERCRRHI 102 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCC--eEEEEeCCHHHHHHHHHHH
Confidence 446799999999999877754 233 6889999999988777664
No 132
>PRK06202 hypothetical protein; Provisional
Probab=89.74 E-value=1.1 Score=43.06 Aligned_cols=45 Identities=31% Similarity=0.436 Sum_probs=35.6
Q ss_pred CCCeEeecccCchHHHHHHhh----cCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDK----SGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~----aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
+..+++||-||.|.++..|.. .|....+.++|+++.+++.-+.+.
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~ 108 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP 108 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc
Confidence 567899999999999887753 354236899999999998877664
No 133
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=89.72 E-value=4.2 Score=39.39 Aligned_cols=78 Identities=14% Similarity=-0.006 Sum_probs=50.6
Q ss_pred CCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC------CCceeccchHHHHHHhhchhhhcccc
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKK 287 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~ 287 (487)
.+.-++||+.+|+|..++.+..+ +-.-.+.++|+++.+++.-+.|+. ...++.+|..+.+.....
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~-------- 138 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLN-------- 138 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHh--------
Confidence 35568999999999866665443 111368999999999888777753 234566777665433210
Q ss_pred ccCCCCCcccEEEcc
Q psy13720 288 QKLPRKGEVEMLCGG 302 (487)
Q Consensus 288 ~~~p~~~~vd~i~gg 302 (487)
. +..+.+|+|+..
T Consensus 139 -~-~~~~~fD~VfiD 151 (234)
T PLN02781 139 -N-DPKPEFDFAFVD 151 (234)
T ss_pred -C-CCCCCCCEEEEC
Confidence 0 112468988764
No 134
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=89.64 E-value=0.51 Score=47.42 Aligned_cols=122 Identities=20% Similarity=0.262 Sum_probs=73.8
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 295 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~ 295 (487)
+.-++||+=||.|-|+++....|. +.+.|+|+|+.|+++-+.|.....+- ..+. + ......+ .+.
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~-~~~~----------v--~~~~~~~-~~~ 225 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVE-DRIE----------V--SLSEDLV-EGK 225 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-T-TCEE----------E--SCTSCTC-CS-
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCC-eeEE----------E--EEecccc-ccc
Confidence 445999999999999999999997 78999999999999988774110000 0000 0 0001111 146
Q ss_pred ccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCCeeEE
Q psy13720 296 VEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF 375 (487)
Q Consensus 296 vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~~ 375 (487)
+|+|++ |- ..+-|+.-.-.+...++|.-+++ +.|++..+ ...+++.+.+ |+.+..
T Consensus 226 ~dlvvA----------NI--------~~~vL~~l~~~~~~~l~~~G~lI--lSGIl~~~----~~~v~~a~~~-g~~~~~ 280 (295)
T PF06325_consen 226 FDLVVA----------NI--------LADVLLELAPDIASLLKPGGYLI--LSGILEEQ----EDEVIEAYKQ-GFELVE 280 (295)
T ss_dssp EEEEEE----------ES---------HHHHHHHHHHCHHHEEEEEEEE--EEEEEGGG----HHHHHHHHHT-TEEEEE
T ss_pred CCEEEE----------CC--------CHHHHHHHHHHHHHhhCCCCEEE--EccccHHH----HHHHHHHHHC-CCEEEE
Confidence 777753 31 12233333334556678875554 38888753 4567777876 988755
Q ss_pred EE
Q psy13720 376 GT 377 (487)
Q Consensus 376 ~~ 377 (487)
..
T Consensus 281 ~~ 282 (295)
T PF06325_consen 281 ER 282 (295)
T ss_dssp EE
T ss_pred EE
Confidence 44
No 135
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=89.64 E-value=0.6 Score=38.52 Aligned_cols=54 Identities=17% Similarity=0.305 Sum_probs=39.9
Q ss_pred EeecccCchHHHHHHhhc---CCCcEEEEEcCcHHHHHHHHHhC----CCCceeccchHHH
Q psy13720 220 CLEVFAGAGGLSRGLDKS---GVARSTWAIEFDSAAATAFKMNN----PGCTVFVDDCNKI 273 (487)
Q Consensus 220 ~ldLFsG~Gg~s~Gl~~a---G~~~~~~a~e~~~~a~~t~~~N~----p~~~~~~~di~~~ 273 (487)
||||-||.|.....|... |....++++|+++.+++..+.+. +.+..+++|+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHC
Confidence 689999999999998765 43247899999999999888776 5667788888654
No 136
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=89.56 E-value=1.1 Score=45.55 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=33.9
Q ss_pred CCCeEeecccCchHHHHHH--hhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGL--DKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl--~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
...++|||-||+|++..-+ ...|+ .+.|+|+|+.|++.-+.|.
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~--~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGW--RFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCC--EEEEEeCCHHHHHHHHHHH
Confidence 5688999999999886544 33465 4789999999999888763
No 137
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=89.46 E-value=2.5 Score=38.73 Aligned_cols=86 Identities=20% Similarity=0.288 Sum_probs=69.4
Q ss_pred CCCCeEeecccCchHHHHHHhhcCC-CcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCC
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 293 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG~-~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~ 293 (487)
.+.+-+++|=.|.|-++..+-.-|. .+.+.++|.+++-...+...+|+..++++|..++-... +.. ..
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l---------~e~--~g 115 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTL---------GEH--KG 115 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHH---------hhc--CC
Confidence 3678899999999999999988888 57899999999999999999999999999877652111 111 12
Q ss_pred CcccEEEccCCCcCcccC
Q psy13720 294 GEVEMLCGGPPCQGFSGM 311 (487)
Q Consensus 294 ~~vd~i~ggpPCq~fS~~ 311 (487)
..+|.++-|.|--.|+..
T Consensus 116 q~~D~viS~lPll~~P~~ 133 (194)
T COG3963 116 QFFDSVISGLPLLNFPMH 133 (194)
T ss_pred CeeeeEEeccccccCcHH
Confidence 368999999998777764
No 138
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=88.50 E-value=16 Score=34.04 Aligned_cols=116 Identities=21% Similarity=0.249 Sum_probs=73.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
+.-+++|+=||+|+++.=+..+|-.--++|+|-|+.|+++-+.|. ++..+..+|.-+.|. .+
T Consensus 34 ~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~-------------~~ 100 (187)
T COG2242 34 PGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALP-------------DL 100 (187)
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhc-------------CC
Confidence 344699999999988776665565456899999999999999984 334445555444321 12
Q ss_pred CCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCC
Q psy13720 291 PRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIG 370 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~G 370 (487)
| ++|.++.|= | +.. ..++.. +.+.++|---++=|+-.+- .+..+++.|+++|
T Consensus 101 ~---~~daiFIGG-----g-------~~i----~~ile~---~~~~l~~ggrlV~naitlE------~~~~a~~~~~~~g 152 (187)
T COG2242 101 P---SPDAIFIGG-----G-------GNI----EEILEA---AWERLKPGGRLVANAITLE------TLAKALEALEQLG 152 (187)
T ss_pred C---CCCEEEECC-----C-------CCH----HHHHHH---HHHHcCcCCeEEEEeecHH------HHHHHHHHHHHcC
Confidence 2 456554431 0 111 123332 3455688666766776553 3567888999999
Q ss_pred Ce
Q psy13720 371 YQ 372 (487)
Q Consensus 371 Y~ 372 (487)
+.
T Consensus 153 ~~ 154 (187)
T COG2242 153 GR 154 (187)
T ss_pred Cc
Confidence 94
No 139
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=88.44 E-value=1.5 Score=41.06 Aligned_cols=43 Identities=16% Similarity=0.006 Sum_probs=32.8
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
..+++|+-||+|.++.-+....-...+.++|.++.+++.-+.|
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~ 88 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREV 88 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHH
Confidence 6789999999999888776432113689999999877766554
No 140
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=88.34 E-value=2.2 Score=42.66 Aligned_cols=84 Identities=19% Similarity=0.245 Sum_probs=57.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCC-CcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~-~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..-+|||+||+.||=+.-+.+.-. .-.++|+|++...+...+.|.. ...+...|...+....
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~------------ 152 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKK------------ 152 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHH------------
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccc------------
Confidence 344599999999998877654321 2468999999999998887642 2333445655442111
Q ss_pred CCCCCcccEEEccCCCcCcccCCc
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMNR 313 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~~ 313 (487)
. ...+|.|..-+||.|.....+
T Consensus 153 ~--~~~fd~VlvDaPCSg~G~i~r 174 (283)
T PF01189_consen 153 P--ESKFDRVLVDAPCSGLGTIRR 174 (283)
T ss_dssp H--TTTEEEEEEECSCCCGGGTTT
T ss_pred c--ccccchhhcCCCccchhhhhh
Confidence 0 115899999999999866554
No 141
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.33 E-value=1.1 Score=42.36 Aligned_cols=45 Identities=18% Similarity=0.118 Sum_probs=33.0
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
..-++||+.||.|..+.-+... +-...++++|+++.+++.-+.|.
T Consensus 72 ~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l 117 (205)
T PRK13944 72 PGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNI 117 (205)
T ss_pred CCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 4467999999999998776543 21135899999998777655554
No 142
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=88.29 E-value=1.3 Score=37.37 Aligned_cols=44 Identities=18% Similarity=0.140 Sum_probs=33.8
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
...+++|+.||.|.++.-+....-...++++|.++.+++.-+.|
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~ 62 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERN 62 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHH
Confidence 34589999999999998876542113679999999988876654
No 143
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=87.63 E-value=0.93 Score=43.13 Aligned_cols=52 Identities=15% Similarity=0.091 Sum_probs=38.3
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKI 273 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~ 273 (487)
+.-++|||-||.|+++.-+.+. |-.-.+.|+|+++ ..+.++..++++|+.+.
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~------~~~~~~v~~i~~D~~~~ 103 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP------MDPIVGVDFLQGDFRDE 103 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc------ccCCCCcEEEecCCCCh
Confidence 4457999999999999876553 3223789999998 23456777888887653
No 144
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=87.33 E-value=0.77 Score=46.26 Aligned_cols=43 Identities=23% Similarity=0.304 Sum_probs=30.9
Q ss_pred CCCeEeecccCchHHHHHHhh--------cCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDK--------SGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~--------aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
..-+++|.+||.|++-..+.. .. ...++++|+++.++..-+.|
T Consensus 46 ~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~-~~~i~G~ei~~~~~~la~~n 96 (311)
T PF02384_consen 46 KGDSVLDPACGSGGFLVAAMEYIKEKRNKIK-EINIYGIEIDPEAVALAKLN 96 (311)
T ss_dssp TTEEEEETT-TTSHHHHHHHHHHHTCHHHHC-CEEEEEEES-HHHHHHHHHH
T ss_pred ccceeechhhhHHHHHHHHHHhhcccccccc-cceeEeecCcHHHHHHHHhh
Confidence 455799999999999777654 12 25789999999998766554
No 145
>PRK06922 hypothetical protein; Provisional
Probab=87.29 E-value=1.7 Score=48.11 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=50.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC----CCceeccchHHHHHHhhchhhhccccccCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP----GCTVFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p----~~~~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
...++||+.||.|.++.-+....-..-+.++|+++.+++..+.+.+ +..++++|+.++ ...+
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dL-------------p~~f- 483 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINL-------------SSSF- 483 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhC-------------cccc-
Confidence 4568999999999998777653211367899999998888776532 223455565432 0112
Q ss_pred CCCcccEEEccCCCc
Q psy13720 292 RKGEVEMLCGGPPCQ 306 (487)
Q Consensus 292 ~~~~vd~i~ggpPCq 306 (487)
..+.+|+++.+++-+
T Consensus 484 edeSFDvVVsn~vLH 498 (677)
T PRK06922 484 EKESVDTIVYSSILH 498 (677)
T ss_pred CCCCEEEEEEchHHH
Confidence 235799998776543
No 146
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=87.25 E-value=1.9 Score=40.55 Aligned_cols=56 Identities=21% Similarity=0.292 Sum_probs=41.8
Q ss_pred CCCeEeecccCchHHHHHHhhcCCC-cEEEEEcCcHHHHHHHHHhCC---CCceeccchH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVA-RSTWAIEFDSAAATAFKMNNP---GCTVFVDDCN 271 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~-~~~~a~e~~~~a~~t~~~N~p---~~~~~~~di~ 271 (487)
+..+++|+.||.|.++.-+...+.. .-+.++|+++.+++.-+.+.+ ...+..+|+.
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~ 98 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAE 98 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchh
Confidence 5678999999999999988777641 268999999999888777764 2334444543
No 147
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=87.05 E-value=1.2 Score=44.55 Aligned_cols=40 Identities=18% Similarity=0.172 Sum_probs=34.5
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
-++||+-||.|..+.-|...|+ .+.|+|+++.|++..+.+
T Consensus 122 ~~vLDlGcG~G~~~~~la~~g~--~V~avD~s~~ai~~~~~~ 161 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLALLGF--DVTAVDINQQSLENLQEI 161 (287)
T ss_pred CCEEEeCCCCCHHHHHHHHCCC--EEEEEECCHHHHHHHHHH
Confidence 3799999999999999988886 578999999998876654
No 148
>KOG2078|consensus
Probab=86.96 E-value=0.51 Score=49.01 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=47.6
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC------C-CceeccchHHHHH
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------G-CTVFVDDCNKILQ 275 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p------~-~~~~~~di~~~~~ 275 (487)
.=.+.|+|||+|-+++-+..-|+ .++|+|.++.+.+-++.|.+ . ..+++.|..++++
T Consensus 250 gevv~D~FaGvGPfa~Pa~kK~c--rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 250 GEVVCDVFAGVGPFALPAAKKGC--RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred cchhhhhhcCcCccccchhhcCc--EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 34488999999999888877786 78999999999999999975 2 4678889888874
No 149
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=86.93 E-value=1.8 Score=42.66 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=33.8
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N 259 (487)
+.-++||+.||.|.++.-+... |....+.++|+++..++.-+.+
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r 117 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASR 117 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHH
Confidence 4568999999999998777543 4213688999999988876644
No 150
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=86.76 E-value=1.4 Score=42.58 Aligned_cols=46 Identities=11% Similarity=0.195 Sum_probs=36.3
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG 262 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~ 262 (487)
...++||+-||.|+++.-+.+.|. ..++|+|+++.-+..-...++.
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga-~~v~avD~~~~~l~~~l~~~~~ 120 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGA-KEVYGVDVGYNQLAEKLRQDER 120 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCC-CEEEEEeCCHHHHHHHHhcCCC
Confidence 455799999999999999999996 7899999999655543333444
No 151
>PLN02244 tocopherol O-methyltransferase
Probab=86.63 E-value=1.5 Score=44.99 Aligned_cols=42 Identities=31% Similarity=0.412 Sum_probs=33.8
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N 259 (487)
..-++||+-||.|+++.-+... |. -+.++|+++..++.-+.+
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~--~v~gvD~s~~~i~~a~~~ 160 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGA--NVKGITLSPVQAARANAL 160 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCC--EEEEEECCHHHHHHHHHH
Confidence 4568999999999999888765 54 578999999887765544
No 152
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=86.55 E-value=1.6 Score=41.73 Aligned_cols=41 Identities=17% Similarity=0.138 Sum_probs=35.7
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKM 258 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~ 258 (487)
..-++||+.||.|--+.-|...|+ -|.|+|+++.|++....
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~--~V~gvD~S~~Ai~~~~~ 74 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGH--RVLGVELSEIAVEQFFA 74 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCC--eEEEEeCCHHHHHHHHH
Confidence 446899999999999999999998 48899999999997543
No 153
>PRK04148 hypothetical protein; Provisional
Probab=86.49 E-value=2 Score=38.01 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=41.6
Q ss_pred CCCeEeecccCchH-HHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchH
Q psy13720 216 RPLRCLEVFAGAGG-LSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCN 271 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg-~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~ 271 (487)
+..+++|+=+|.|. ++.-|.+.|+ -+.|+|+++.|++..+.+. +.+..+|+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~--~ViaIDi~~~aV~~a~~~~--~~~v~dDlf 68 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF--DVIVIDINEKAVEKAKKLG--LNAFVDDLF 68 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC--EEEEEECCHHHHHHHHHhC--CeEEECcCC
Confidence 34689999999886 8889999996 5789999999999877763 455666653
No 154
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=86.45 E-value=1.8 Score=41.17 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=37.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCC-CcEEEEEcCcHHHHHHHHHhCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNP 261 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~-~~~~~a~e~~~~a~~t~~~N~p 261 (487)
+..+++|+.||.|.++.-+...+- ...+.++|+++.+++.-+.+..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~ 97 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLR 97 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhc
Confidence 457899999999999988877662 1478999999998887777653
No 155
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=86.39 E-value=3.1 Score=39.79 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=35.5
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
+..++||+.||.|.++.-+...|. .+.++|+++.+++.-+.+.
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~ 90 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA--DVTGIDASEENIEVARLHA 90 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC--eEEEEcCCHHHHHHHHHHH
Confidence 567899999999999988888775 4789999999887666553
No 156
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=85.93 E-value=2.1 Score=43.67 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=32.5
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATA 255 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t 255 (487)
..-+|||+=||.|.++..+...|. ..+.++|.++..+..
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~-~~V~GiD~S~~~l~q 160 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGA-KLVVGIDPSQLFLCQ 160 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHH
Confidence 345899999999999999988886 678999999875543
No 157
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=85.34 E-value=2.6 Score=39.91 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=35.5
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
...++||+.||.|.++.-+...|. + +.++|.++.+++..+.+.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~-v~~iD~s~~~~~~a~~~~ 87 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-N-VTGIDASEENIEVAKLHA 87 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-e-EEEEeCCHHHHHHHHHHH
Confidence 467899999999999988888775 4 789999998877666553
No 158
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=85.26 E-value=1.6 Score=41.48 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=37.1
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
+..++||+.||.|.++..|...|. . +.++|+++.+++.-+.++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~-~-v~~~D~s~~~i~~a~~~~ 105 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGA-K-VVASDISPQMVEEARERA 105 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCC-E-EEEEECCHHHHHHHHHHH
Confidence 567899999999999999988886 4 899999999988777664
No 159
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=85.25 E-value=3 Score=39.65 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=35.2
Q ss_pred CCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
++.-++||+.||.|.++.-+... |-...++++|+++..++.-+.|.
T Consensus 75 ~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l 121 (212)
T PRK13942 75 KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTL 121 (212)
T ss_pred CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 35568999999999999776543 32136899999999888777664
No 160
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=85.19 E-value=2.2 Score=39.83 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=48.3
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 295 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~ 295 (487)
..-+++|+-||.|.++.-+...+. ..++++|+++.+++..+.+ +...+.+|+.+.+ ..++ .+.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~-~~~~giD~s~~~i~~a~~~--~~~~~~~d~~~~l-------------~~~~-~~s 75 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQ-VRGYGIEIDQDGVLACVAR--GVNVIQGDLDEGL-------------EAFP-DKS 75 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccC-CcEEEEeCCHHHHHHHHHc--CCeEEEEEhhhcc-------------cccC-CCC
Confidence 345799999999999888865443 2468999999888776543 3345555654310 0011 246
Q ss_pred ccEEEccCCCc
Q psy13720 296 VEMLCGGPPCQ 306 (487)
Q Consensus 296 vd~i~ggpPCq 306 (487)
+|+|+.....+
T Consensus 76 fD~Vi~~~~l~ 86 (194)
T TIGR02081 76 FDYVILSQTLQ 86 (194)
T ss_pred cCEEEEhhHhH
Confidence 89998875543
No 161
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=85.15 E-value=0.83 Score=44.51 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=29.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFK 257 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~ 257 (487)
..-+++|+|||+|+.++.+...+ ..++++|+++.....++
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~--~~vi~ND~~~~l~~~~~ 59 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPG--KRVIINDINPDLINFWK 59 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---S--SEEEEEES-HHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcccc--cceeeeechHHHHHHHH
Confidence 46679999999999998886544 47889999999888777
No 162
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=84.91 E-value=2.9 Score=40.65 Aligned_cols=47 Identities=15% Similarity=0.121 Sum_probs=37.5
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG 262 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~ 262 (487)
+..++||+.||.|-+++.+..+.-.--+.++|+++.-++.-+.-..+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~ 97 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKK 97 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhc
Confidence 67899999999999999987643124578999999988877766544
No 163
>KOG2187|consensus
Probab=84.78 E-value=1.5 Score=46.84 Aligned_cols=43 Identities=23% Similarity=0.373 Sum_probs=35.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
..-.++|+|||.|-+++.+.. |+ ..+.++|++++|+.--+.|-
T Consensus 383 ~~k~llDv~CGTG~iglala~-~~-~~ViGvEi~~~aV~dA~~nA 425 (534)
T KOG2187|consen 383 ADKTLLDVCCGTGTIGLALAR-GV-KRVIGVEISPDAVEDAEKNA 425 (534)
T ss_pred CCcEEEEEeecCCceehhhhc-cc-cceeeeecChhhcchhhhcc
Confidence 345589999999999888854 65 68999999999998777664
No 164
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=84.70 E-value=1.8 Score=40.81 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=30.8
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHH
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAF 256 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~ 256 (487)
.=.|||.|||.|.......+.| +-..++|+++..++.-
T Consensus 192 gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a 229 (231)
T PF01555_consen 192 GDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIA 229 (231)
T ss_dssp T-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHH
T ss_pred ceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHh
Confidence 4459999999999999999999 4678999999988764
No 165
>PRK04457 spermidine synthase; Provisional
Probab=84.33 E-value=4.5 Score=39.87 Aligned_cols=121 Identities=12% Similarity=0.090 Sum_probs=71.1
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC------CCceeccchHHHHHHhhchhhhccccccC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
+-++++|=+|.|.++.-+...--...+.++|+|+..++.-+.++. ...++.+|..+++.. .
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~-------------~ 133 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV-------------H 133 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh-------------C
Confidence 346999999999988877543211358999999999998887753 345677887776422 1
Q ss_pred CCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHh
Q psy13720 291 PRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQ 368 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~ 368 (487)
.+.+|+|+.. .|+..+. ........++. .+.+.++|.-+++=|+.+-- ..+..+++.|.+
T Consensus 134 --~~~yD~I~~D----~~~~~~~----~~~l~t~efl~---~~~~~L~pgGvlvin~~~~~-----~~~~~~l~~l~~ 193 (262)
T PRK04457 134 --RHSTDVILVD----GFDGEGI----IDALCTQPFFD---DCRNALSSDGIFVVNLWSRD-----KRYDRYLERLES 193 (262)
T ss_pred --CCCCCEEEEe----CCCCCCC----ccccCcHHHHH---HHHHhcCCCcEEEEEcCCCc-----hhHHHHHHHHHH
Confidence 1357888753 2322111 00000112222 23345789988888875421 224455555543
No 166
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=83.91 E-value=20 Score=34.95 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=91.6
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC---------CCCceeccchHHHHHHhhchhhhccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---------PGCTVFVDDCNKILQRVIDNEVCDDK 286 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~---------p~~~~~~~di~~~~~~~~~~~~~~~~ 286 (487)
.+-+||-|=.|.||...-+....-.+-+.+||+|+..++..+..+ |...++.+|...+++...
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~-------- 147 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQ-------- 147 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSS--------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhcc--------
Confidence 345577777788888777765442267899999999988877654 345678888887764321
Q ss_pred cccCCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHh-hhcCCcEEEEecCcchhcccchhHHHHHHHH
Q psy13720 287 KQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYC-DYYRPRFFLLENVRNFVAFKNSMVLKMTMRC 365 (487)
Q Consensus 287 ~~~~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v-~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~ 365 (487)
. ..+|+|+.-.+= +.+.+. +-.-.+|++.+ +.++|.-+++=|...... ....+..+.+.
T Consensus 148 -----~-~~yDvIi~D~~d-p~~~~~-----------~l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~--~~~~~~~i~~t 207 (246)
T PF01564_consen 148 -----E-EKYDVIIVDLTD-PDGPAP-----------NLFTREFYQLCKRRLKPDGVLVLQAGSPFL--HPELFKSILKT 207 (246)
T ss_dssp -----S-T-EEEEEEESSS-TTSCGG-----------GGSSHHHHHHHHHHEEEEEEEEEEEEETTT--THHHHHHHHHH
T ss_pred -----C-CcccEEEEeCCC-CCCCcc-----------cccCHHHHHHHHhhcCCCcEEEEEccCccc--chHHHHHHHHH
Confidence 1 158888875441 111110 01123344444 556899999988855432 23567888999
Q ss_pred HHhCCCeeEEEEEeccCCCCC
Q psy13720 366 LTQIGYQCTFGTLQAGHFGVS 386 (487)
Q Consensus 366 l~~~GY~~~~~~l~a~~yGvP 386 (487)
|.+..-++.......-.||..
T Consensus 208 l~~~F~~v~~~~~~vP~~~~~ 228 (246)
T PF01564_consen 208 LRSVFPQVKPYTAYVPSYGSG 228 (246)
T ss_dssp HHTTSSEEEEEEEECTTSCSS
T ss_pred HHHhCCceEEEEEEcCeeccc
Confidence 999988888888887777654
No 167
>PRK08317 hypothetical protein; Provisional
Probab=83.88 E-value=3.6 Score=38.90 Aligned_cols=45 Identities=22% Similarity=0.146 Sum_probs=34.8
Q ss_pred CCCCeEeecccCchHHHHHHhhcC-CCcEEEEEcCcHHHHHHHHHh
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSG-VARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG-~~~~~~a~e~~~~a~~t~~~N 259 (487)
....++||+.||.|.++..+.... -...+.++|+++..++.-+.+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~ 63 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHH
Confidence 356789999999999998886642 113688999999887766655
No 168
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=83.47 E-value=3.7 Score=40.04 Aligned_cols=72 Identities=18% Similarity=0.231 Sum_probs=50.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 295 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~ 295 (487)
..-++||+=||.|.++.-+....-...+.++|+++..++.-+.+ +.....+|+.++ +..+.
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--~~~~~~~d~~~~-----------------~~~~~ 89 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--GVDARTGDVRDW-----------------KPKPD 89 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--CCcEEEcChhhC-----------------CCCCC
Confidence 45689999999999998887662112579999999988876654 345555665432 12247
Q ss_pred ccEEEccCCCc
Q psy13720 296 VEMLCGGPPCQ 306 (487)
Q Consensus 296 vd~i~ggpPCq 306 (487)
+|+|+.....+
T Consensus 90 fD~v~~~~~l~ 100 (255)
T PRK14103 90 TDVVVSNAALQ 100 (255)
T ss_pred ceEEEEehhhh
Confidence 89998876654
No 169
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=83.47 E-value=3.3 Score=40.85 Aligned_cols=47 Identities=15% Similarity=0.304 Sum_probs=36.9
Q ss_pred CcCCCCeEeecccCchHHHHHHhh-cCCCcEEEEEcCcHHHHHHHHHhCC
Q psy13720 213 SIARPLRCLEVFAGAGGLSRGLDK-SGVARSTWAIEFDSAAATAFKMNNP 261 (487)
Q Consensus 213 ~~~~~l~~ldLFsG~Gg~s~Gl~~-aG~~~~~~a~e~~~~a~~t~~~N~p 261 (487)
.+++..++||+-||.|+.+.-+.. .|. .+.++|+++.+++.-+.+.+
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~--~v~giD~s~~~~~~a~~~~~ 96 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGA--HVHGVDICEKMVNIAKLRNS 96 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCC--EEEEEECCHHHHHHHHHHcC
Confidence 334667899999999998887754 353 58899999998887777654
No 170
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=83.40 E-value=3.2 Score=41.05 Aligned_cols=56 Identities=14% Similarity=0.194 Sum_probs=42.5
Q ss_pred CCCeEeecccCchHHHHHHhhcCC---CcEEEEEcCcHHHHHHHHHhCCCCceeccchH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGV---ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCN 271 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~---~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~ 271 (487)
...++||+=||.|.++..+....- ...+.++|+++.+++.-+.+.++.....+|+.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~ 143 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSH 143 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecc
Confidence 345799999999999988865421 02579999999999988888887666666643
No 171
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=83.39 E-value=7.9 Score=43.85 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=47.0
Q ss_pred EEEEEcCcHHHHHHHHHhCCC------CceeccchHHHHHHhhchhhhccccccCCC-CCcccEEEccCCCcCcccCCcc
Q psy13720 242 STWAIEFDSAAATAFKMNNPG------CTVFVDDCNKILQRVIDNEVCDDKKQKLPR-KGEVEMLCGGPPCQGFSGMNRF 314 (487)
Q Consensus 242 ~~~a~e~~~~a~~t~~~N~p~------~~~~~~di~~~~~~~~~~~~~~~~~~~~p~-~~~vd~i~ggpPCq~fS~~~~~ 314 (487)
.++++|+|+.|++.-+.|.-. ..+..+|+.++. .+. .+.+|+|+.-||=-. ..+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~---------------~~~~~~~~d~IvtNPPYg~--r~~-- 318 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLK---------------NPLPKGPTGLVISNPPYGE--RLG-- 318 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcc---------------cccccCCCCEEEECCCCcC--ccC--
Confidence 478999999999998888432 223345554320 111 235899999999421 111
Q ss_pred CCcccccchhHHHHHHHHHhhhc--CCcEEEEecCcc
Q psy13720 315 NQRQYSAFKNSLIVSYLSYCDYY--RPRFFLLENVRN 349 (487)
Q Consensus 315 ~~~~~~d~r~~L~~~~l~~v~~~--~P~~~ilENV~g 349 (487)
.......|+..+.+.++.. .++.+++=.=.+
T Consensus 319 ----~~~~l~~lY~~lg~~lk~~~~g~~~~llt~~~~ 351 (702)
T PRK11783 319 ----EEPALIALYSQLGRRLKQQFGGWNAALFSSSPE 351 (702)
T ss_pred ----chHHHHHHHHHHHHHHHHhCCCCeEEEEeCCHH
Confidence 1112235666666666543 244555444333
No 172
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=83.28 E-value=3.6 Score=41.77 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAF 256 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~ 256 (487)
..-+++|+=||.|.+...+...|. ..+.++|.++..+..+
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~-~~v~GiDpS~~ml~q~ 160 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGA-KSLVGIDPTVLFLCQF 160 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCC-CEEEEEcCCHHHHHHH
Confidence 345899999999999999988886 6789999998765443
No 173
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=83.19 E-value=2.9 Score=40.13 Aligned_cols=40 Identities=20% Similarity=0.149 Sum_probs=35.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFK 257 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~ 257 (487)
+.-++||+.||.|--+.-|.+.|+ -|.|+|+++.|++.+.
T Consensus 37 ~~~rvL~~gCG~G~da~~LA~~G~--~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 37 AGSRVLVPLCGKSLDMLWLAEQGH--EVLGVELSELAVEQFF 76 (218)
T ss_pred CCCeEEEeCCCChHhHHHHHhCCC--eEEEEccCHHHHHHHH
Confidence 346899999999999999999998 4889999999999764
No 174
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=82.63 E-value=4 Score=32.22 Aligned_cols=66 Identities=15% Similarity=0.251 Sum_probs=44.1
Q ss_pred eecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCc--eeccchHHHHHHhhchhhhccccccCCCCCcccE
Q psy13720 221 LEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCT--VFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEM 298 (487)
Q Consensus 221 ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~--~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~vd~ 298 (487)
||+=||.|-.+..+...+. .-++++|+++.+++..+.+..... ...+|+.++ .+| .+.+|+
T Consensus 1 LdiG~G~G~~~~~l~~~~~-~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l---------------~~~-~~sfD~ 63 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGG-ASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDL---------------PFP-DNSFDV 63 (95)
T ss_dssp EEET-TTSHHHHHHHHTTT-CEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSS---------------SS--TT-EEE
T ss_pred CEecCcCCHHHHHHHhccC-CEEEEEeCCHHHHHHHHhcccccCchheeehHHhC---------------ccc-cccccc
Confidence 6888999999999988843 578999999999998888875543 444443321 122 357898
Q ss_pred EEccC
Q psy13720 299 LCGGP 303 (487)
Q Consensus 299 i~ggp 303 (487)
++...
T Consensus 64 v~~~~ 68 (95)
T PF08241_consen 64 VFSNS 68 (95)
T ss_dssp EEEES
T ss_pred ccccc
Confidence 87544
No 175
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=82.49 E-value=2.2 Score=39.54 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=37.7
Q ss_pred CCcCCCCeEeecccCchHHHHHHhhcCC-CcEEEEEcCcHHHHHHHHHhCCCCceeccchH
Q psy13720 212 PSIARPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCN 271 (487)
Q Consensus 212 ~~~~~~l~~ldLFsG~Gg~s~Gl~~aG~-~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~ 271 (487)
..+++.-++||+-||.|+++.-+..... ...++++|+++.. ..++...++.|+.
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~------~~~~i~~~~~d~~ 82 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK------PIENVDFIRGDFT 82 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc------cCCCceEEEeeCC
Confidence 3444567899999999999887765432 1358999999854 3455566666654
No 176
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=82.39 E-value=2 Score=49.09 Aligned_cols=81 Identities=15% Similarity=0.252 Sum_probs=47.2
Q ss_pred CeEeEEEEcCeEEeeCCeEEeCCCcc-ccccCCccccccCCCCCCCCccchhhhcccCCceeccCCCCCCCceEEEEEEE
Q psy13720 1 LYYNCVSYEGEQYKLKSCVYVNPDCF-KFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVAI 79 (487)
Q Consensus 1 ~~y~~v~~~g~~y~vGD~V~v~p~~~-~~~~~~~~~~~~~~~~~~de~~~~e~~r~~~~~~~~~~~~~~~P~~IgrI~~i 79 (487)
|.|+|+.+++++|+.||-|++--+.- .+.....+.+...+-...-+.+|. ..=|+|..|
T Consensus 441 ~iye~~~in~~~ys~g~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~--------------------l~kg~is~f 500 (1164)
T PTZ00112 441 VIYESIQINDVEYSIGDDVLIFCTGNGNTYNGKSGTKKNQNNKNIKENIYQ--------------------LRKGKISSF 500 (1164)
T ss_pred eEEEEEEEcceeeccCCcEEEEEcCCCCccccccCccccccccchhhhhhe--------------------ecccccchh
Confidence 57999999999999999999843321 111111111111111111122211 144788888
Q ss_pred EecCCCCCCCCCceEEEEEeeeccccC
Q psy13720 80 FKKKGKKNVSASDVFLTVKKFYRPENT 106 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~v~v~wfyRp~dt 106 (487)
+.+.. ...+...|+.||--.|-
T Consensus 501 y~~~~-----~~~~~~e~c~y~d~~d~ 522 (1164)
T PTZ00112 501 YKNTN-----SNQVEAEVCIYYDQHDA 522 (1164)
T ss_pred hhcCC-----CceeeEEEEEEEccccH
Confidence 87654 36677888888876663
No 177
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=81.65 E-value=1.8 Score=46.22 Aligned_cols=58 Identities=28% Similarity=0.265 Sum_probs=40.5
Q ss_pred CCCeEeecccCchHHHHHHhhcC----CCcEEEEEcCcHHHHHHHHH----h-C-CCCceeccchHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSG----VARSTWAIEFDSAAATAFKM----N-N-PGCTVFVDDCNKI 273 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG----~~~~~~a~e~~~~a~~t~~~----N-~-p~~~~~~~di~~~ 273 (487)
+...|+|+=||-|-|+.-.-+|| ...-++|||.++.|..+.+. | + ..+.++.+|++++
T Consensus 186 ~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 186 KDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp TT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred cceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC
Confidence 46789999999999997766665 23579999999999988742 3 2 2355777777654
No 178
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=81.43 E-value=3.5 Score=40.55 Aligned_cols=55 Identities=29% Similarity=0.239 Sum_probs=45.6
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC---CCCceeccchHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---PGCTVFVDDCNK 272 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~---p~~~~~~~di~~ 272 (487)
+.=+++++=+|.|+++.-|-+.+- .+.|+|+|+.-+..++..+ .+..++.+|+-.
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~--~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk 87 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAA--RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALK 87 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcC--eEEEEEeCHHHHHHHHHhcccccceEEEeCchhc
Confidence 356799999999999999998884 5899999999999998775 345677777654
No 179
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=81.42 E-value=4.2 Score=41.45 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=32.6
Q ss_pred CCCCeEeecccCchHHHHHHhhcCC-CcEEEEEcCcHHHHHHHHHh
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG~-~~~~~a~e~~~~a~~t~~~N 259 (487)
++.-++||+.||.|.++.-+....- ...+.++|+++..++.-+.|
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~ 124 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRN 124 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHH
Confidence 3556899999999999887765321 12478999999876655543
No 180
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=80.64 E-value=2.4 Score=41.71 Aligned_cols=56 Identities=32% Similarity=0.373 Sum_probs=46.7
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC---CCCceeccchHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---PGCTVFVDDCNKI 273 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~---p~~~~~~~di~~~ 273 (487)
....++|+.+|.|.++.-|...| +-+.++|+|+..++.++..+ ++..++.+|+.++
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKW 88 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTS
T ss_pred CCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhcc
Confidence 67789999999999999999888 57899999999999999865 4556777786543
No 181
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=80.62 E-value=7.2 Score=39.25 Aligned_cols=59 Identities=20% Similarity=0.089 Sum_probs=44.7
Q ss_pred CCCeEeecccCchHHHHHHhhcCC-CcEEEEEcCcHHHHHHHHHhCC---CCceeccchHHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNP---GCTVFVDDCNKIL 274 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~-~~~~~a~e~~~~a~~t~~~N~p---~~~~~~~di~~~~ 274 (487)
+.-.++|.-||.||.|..+-...- .-.++|+|.|+.|++.-+.+.. ....+++|..++.
T Consensus 19 pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~ 81 (296)
T PRK00050 19 PDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLK 81 (296)
T ss_pred CCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHH
Confidence 345799999999999999877631 1368999999999988776542 3456777777664
No 182
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=80.48 E-value=6.9 Score=40.90 Aligned_cols=76 Identities=17% Similarity=0.116 Sum_probs=53.5
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh-----CCCCceeccchHHHHHHhhchhhhccccccCC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVDDCNKILQRVIDNEVCDDKKQKLP 291 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N-----~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p 291 (487)
...+||+-||.|.+...+....-...+.|+|+++.++..-..+ ..+..++.+|+..++. .+|
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~-------------~~~ 189 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLE-------------LLP 189 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhh-------------hCC
Confidence 4579999999999998887653224689999998776544433 3455667778776531 122
Q ss_pred CCCcccEEEccCCCc
Q psy13720 292 RKGEVEMLCGGPPCQ 306 (487)
Q Consensus 292 ~~~~vd~i~ggpPCq 306 (487)
.+.+|.|+.-+|+.
T Consensus 190 -~~s~D~I~lnFPdP 203 (390)
T PRK14121 190 -SNSVEKIFVHFPVP 203 (390)
T ss_pred -CCceeEEEEeCCCC
Confidence 35789999888875
No 183
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=80.13 E-value=1.7 Score=40.84 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=58.7
Q ss_pred CCCCcCCCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhcccccc
Q psy13720 210 EWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 210 ~~~~~~~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
..|+.=+..+||||.||.|=.+..-..+|- .-+++.|+++.+.+..+.|-....+ .|. +.. .+.
T Consensus 73 ~~PetVrgkrVLd~gagsgLvaIAaa~aGA-~~v~a~d~~P~~~~ai~lNa~angv---~i~----------~~~--~d~ 136 (218)
T COG3897 73 DHPETVRGKRVLDLGAGSGLVAIAAARAGA-AEVVAADIDPWLEQAIRLNAAANGV---SIL----------FTH--ADL 136 (218)
T ss_pred cCccccccceeeecccccChHHHHHHHhhh-HHHHhcCCChHHHHHhhcchhhccc---eeE----------Eee--ccc
Confidence 445555789999999999999999999996 7789999999999988887532111 000 000 011
Q ss_pred CCCCCcccEEEccCCCcCccc
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSG 310 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~ 310 (487)
+-.++.+|+|.+|-=|=+.+.
T Consensus 137 ~g~~~~~Dl~LagDlfy~~~~ 157 (218)
T COG3897 137 IGSPPAFDLLLAGDLFYNHTE 157 (218)
T ss_pred cCCCcceeEEEeeceecCchH
Confidence 113458999999987755444
No 184
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=80.05 E-value=3.5 Score=39.96 Aligned_cols=101 Identities=14% Similarity=0.262 Sum_probs=55.6
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhchhhhcccccc
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVCDDKKQK 289 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~~~~~~~~~~ 289 (487)
+..++||+.||.|-++.-+... |-.-.+.++|+++.-++.-+... .+....++|..++ .
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~l---------------p 111 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDL---------------P 111 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB-----------------
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHh---------------c
Confidence 5568999999999999988653 43236889999998777666542 2334444454332 1
Q ss_pred CCCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCC--cEEEEecC
Q psy13720 290 LPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRP--RFFLLENV 347 (487)
Q Consensus 290 ~p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P--~~~ilENV 347 (487)
+| .+.+|+++.++ ... ...| +...+.++.|+ +|| .++++|-.
T Consensus 112 ~~-d~sfD~v~~~f-----glr------n~~d-~~~~l~E~~RV---LkPGG~l~ile~~ 155 (233)
T PF01209_consen 112 FP-DNSFDAVTCSF-----GLR------NFPD-RERALREMYRV---LKPGGRLVILEFS 155 (233)
T ss_dssp S--TT-EEEEEEES------GG------G-SS-HHHHHHHHHHH---EEEEEEEEEEEEE
T ss_pred CC-CCceeEEEHHh-----hHH------hhCC-HHHHHHHHHHH---cCCCeEEEEeecc
Confidence 22 24789987654 221 1223 22345665554 578 67888853
No 185
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=79.45 E-value=5.8 Score=40.83 Aligned_cols=58 Identities=24% Similarity=0.409 Sum_probs=45.2
Q ss_pred CCeEeecccCch--HHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC----C-CCceeccchHHHHHH
Q psy13720 217 PLRCLEVFAGAG--GLSRGLDKSGVARSTWAIEFDSAAATAFKMNN----P-GCTVFVDDCNKILQR 276 (487)
Q Consensus 217 ~l~~ldLFsG~G--g~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~----p-~~~~~~~di~~~~~~ 276 (487)
..+++|-|||.| |.....+ +|. ..++++|+++.|.++-+.|. + +..+++.|.+.++..
T Consensus 53 ~~~v~DalsatGiRgIRya~E-~~~-~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~ 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVE-TGV-VKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE 117 (380)
T ss_pred CeEEeecccccchhHhhhhhh-cCc-cEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh
Confidence 678999999999 5555554 344 47899999999999998873 1 456778899998765
No 186
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=79.16 E-value=11 Score=35.50 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=43.3
Q ss_pred CCCCeEeecccCchHHHHHHhh-cCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHH
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDK-SGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKIL 274 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~-aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~ 274 (487)
.+.-+||||=||-|-+-.=|.. -++ ...++|+|+..+..-.++ +..++.+|+++-|
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v--~g~GvEid~~~v~~cv~r--Gv~Viq~Dld~gL 68 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQV--DGYGVEIDPDNVAACVAR--GVSVIQGDLDEGL 68 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCC--eEEEEecCHHHHHHHHHc--CCCEEECCHHHhH
Confidence 3567899999999998777766 343 689999999977665554 5678999988644
No 187
>PF10383 Clr2: Transcription-silencing protein Clr2 ; InterPro: IPR018839 Clr2 (cryptic loci regulator) is a chromatin silencing protein, one of a quartet of proteins forming the core of SHREC, a multienzyme effector complex that mediates hetero-chromatic transcriptional gene silencing in fission yeast []. Clr2 does not have any obvious well-conserved domains but, along with the other core proteins, binds to the histone deacetylase Clr3, and on its own might also have a role in chromatin organisation at the cnt domain, the site of kinetochore assembly.
Probab=77.96 E-value=31 Score=30.58 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=22.6
Q ss_pred CeEeEEEEcCeEEeeCCeEEeCCCc
Q psy13720 1 LYYNCVSYEGEQYKLKSCVYVNPDC 25 (487)
Q Consensus 1 ~~y~~v~~~g~~y~vGD~V~v~p~~ 25 (487)
+||.-+-++-|.+.|||.|-|.|..
T Consensus 1 i~y~GiflGAE~I~vGD~VRl~~~~ 25 (139)
T PF10383_consen 1 IYYRGIFLGAEMIWVGDAVRLKPLN 25 (139)
T ss_pred CeECeEEEeeEEEEeCCEEEECccC
Confidence 5999999999999999999996654
No 188
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=77.88 E-value=4.9 Score=37.60 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=35.8
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
.+.++||+=||.|-++.-+...|+ .+.|+|+++.+++..+.+
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~--~V~~iD~s~~~l~~a~~~ 71 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY--DVRAWDHNPASIASVLDM 71 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHH
Confidence 456899999999999999988886 579999999998876544
No 189
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=77.38 E-value=4.4 Score=40.65 Aligned_cols=68 Identities=19% Similarity=0.339 Sum_probs=47.6
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh----CCCC-ceeccchHHHHHHhhchhhhccccccCCCC
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN----NPGC-TVFVDDCNKILQRVIDNEVCDDKKQKLPRK 293 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N----~p~~-~~~~~di~~~~~~~~~~~~~~~~~~~~p~~ 293 (487)
+++||=||.|-++.-+....-..-+.-+|+|..|++.-+.| .++. .++..|+.+ +-.
T Consensus 161 ~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~------------------~v~ 222 (300)
T COG2813 161 KVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE------------------PVE 222 (300)
T ss_pred cEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc------------------ccc
Confidence 89999999998887776554224677899999988876665 3333 344444321 122
Q ss_pred CcccEEEccCC
Q psy13720 294 GEVEMLCGGPP 304 (487)
Q Consensus 294 ~~vd~i~ggpP 304 (487)
+.+|+|+--||
T Consensus 223 ~kfd~IisNPP 233 (300)
T COG2813 223 GKFDLIISNPP 233 (300)
T ss_pred ccccEEEeCCC
Confidence 37999999999
No 190
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=76.70 E-value=5.4 Score=37.52 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=33.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKM 258 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~ 258 (487)
++-++|||=||-|--++=|.+.|+ .|.|+|+++.|++..+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~--~VtAvD~s~~al~~l~~ 70 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGF--DVTAVDISPVALEKLQR 70 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCC--eEEEEECCHHHHHHHHH
Confidence 567899999999999999999998 58999999999886543
No 191
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=76.15 E-value=5.8 Score=34.97 Aligned_cols=39 Identities=21% Similarity=0.345 Sum_probs=35.1
Q ss_pred CCCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHH
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATA 255 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t 255 (487)
....++||+=||.|.++..+...|+ -+.++|+++.+++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK 59 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh
Confidence 3677899999999999999999997 57899999999888
No 192
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=75.84 E-value=9.9 Score=39.06 Aligned_cols=146 Identities=14% Similarity=0.195 Sum_probs=79.1
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC--CCceeccchHHHHHHhhchhhhccccccCCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP--GCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 292 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p--~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~ 292 (487)
...++||+-||.|.++..+... +- ..+.++|.++..++.-+.+.+ +..++.+|+.++ .++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~-~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~l---------------p~~- 175 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDA-KNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDL---------------PFP- 175 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCC-CEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhC---------------CCC-
Confidence 4678999999999988887553 32 368899999998877766643 334444554332 111
Q ss_pred CCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCc--EEEEecCc-ch-hccc------chhHHHHH
Q psy13720 293 KGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPR--FFLLENVR-NF-VAFK------NSMVLKMT 362 (487)
Q Consensus 293 ~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~--~~ilENV~-gl-~~~~------~~~~~~~i 362 (487)
.+.+|+|+....- ... .+. ..++.+ +.+.++|. +++++-+. .. ++.. .....+.+
T Consensus 176 ~~sFDvVIs~~~L------~~~-----~d~-~~~L~e---~~rvLkPGG~LvIi~~~~p~~~~~r~~~~~~~~~~t~eEl 240 (340)
T PLN02490 176 TDYADRYVSAGSI------EYW-----PDP-QRGIKE---AYRVLKIGGKACLIGPVHPTFWLSRFFADVWMLFPKEEEY 240 (340)
T ss_pred CCceeEEEEcChh------hhC-----CCH-HHHHHH---HHHhcCCCcEEEEEEecCcchhHHHHhhhhhccCCCHHHH
Confidence 2468988763221 110 111 123343 44456664 33445332 11 1100 01124678
Q ss_pred HHHHHhCCCee-EEEEEeccCCCCCCcccEEEE
Q psy13720 363 MRCLTQIGYQC-TFGTLQAGHFGVSQTRRRAIV 394 (487)
Q Consensus 363 ~~~l~~~GY~~-~~~~l~a~~yGvPQ~R~R~fi 394 (487)
.+.|++.||.. ....+....| --++|.-+++
T Consensus 241 ~~lL~~aGF~~V~i~~i~~~~~-~~~~~~~~~~ 272 (340)
T PLN02490 241 IEWFTKAGFKDVKLKRIGPKWY-RGVRRHGLIM 272 (340)
T ss_pred HHHHHHCCCeEEEEEEcChhhc-ccccccccee
Confidence 88899999974 4444433332 2244444443
No 193
>PLN02476 O-methyltransferase
Probab=75.03 E-value=32 Score=34.27 Aligned_cols=80 Identities=18% Similarity=0.049 Sum_probs=53.5
Q ss_pred CCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC------CCceeccchHHHHHHhhchhhhcccc
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP------GCTVFVDDCNKILQRVIDNEVCDDKK 287 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p------~~~~~~~di~~~~~~~~~~~~~~~~~ 287 (487)
.+.-++||+.+|.|..++-+..+ +-.-.+.++|.++.+++.-+.|+- ...++.+|..+.|.....
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~-------- 188 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQ-------- 188 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHh--------
Confidence 45668999999999988877653 111248899999998888877763 234566777776543210
Q ss_pred ccCCCCCcccEEEccCC
Q psy13720 288 QKLPRKGEVEMLCGGPP 304 (487)
Q Consensus 288 ~~~p~~~~vd~i~ggpP 304 (487)
+. ..+.+|+|+...+
T Consensus 189 ~~--~~~~FD~VFIDa~ 203 (278)
T PLN02476 189 NG--EGSSYDFAFVDAD 203 (278)
T ss_pred cc--cCCCCCEEEECCC
Confidence 00 1246899887755
No 194
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=73.52 E-value=4.2 Score=41.66 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=28.8
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAF 256 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~ 256 (487)
+..+||||+||=||=-.=...+++ ..++++|++..+++--
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea 101 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEA 101 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHH
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHH
Confidence 778999999998885555667887 7899999998776643
No 195
>PRK11524 putative methyltransferase; Provisional
Probab=73.37 E-value=5.4 Score=39.77 Aligned_cols=42 Identities=24% Similarity=0.078 Sum_probs=35.3
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
.=.|||-|+|.|......++.| +-..++|+++..++.-+...
T Consensus 209 GD~VLDPF~GSGTT~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 209 GDIVLDPFAGSFTTGAVAKASG--RKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred CCEEEECCCCCcHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHH
Confidence 3459999999999999999999 56789999999888766553
No 196
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=73.29 E-value=7 Score=34.07 Aligned_cols=42 Identities=21% Similarity=0.119 Sum_probs=36.1
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
+++|+-||.|-.+..+...+....++++|.++.+.+.++.|.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~ 42 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENV 42 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHH
Confidence 489999999999999988875237999999999999888874
No 197
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=72.91 E-value=7.8 Score=36.73 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=32.0
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
++||+-||.|+++.-+....-.-.+.++|+++..++.-+.+.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~ 43 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERI 43 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 589999999998887765421125789999998887777665
No 198
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=72.27 E-value=7.1 Score=36.81 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=44.5
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC---CCCceeccchHHHHHHhhchhhhccccccCCCCC
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN---PGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 294 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~---p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~ 294 (487)
-+++|+=||+|-++.-|..-. .-+.|+|+++.|++.-+... |++.+...|+... .| .+
T Consensus 45 ~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~----------------~P-~~ 105 (201)
T PF05401_consen 45 RRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEF----------------WP-EG 105 (201)
T ss_dssp EEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT--------------------SS
T ss_pred ceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCC----------------CC-CC
Confidence 458999999999999996653 67899999999999887654 4444555554322 22 46
Q ss_pred cccEEEccCC
Q psy13720 295 EVEMLCGGPP 304 (487)
Q Consensus 295 ~vd~i~ggpP 304 (487)
.+|+|+.+-=
T Consensus 106 ~FDLIV~SEV 115 (201)
T PF05401_consen 106 RFDLIVLSEV 115 (201)
T ss_dssp -EEEEEEES-
T ss_pred CeeEEEEehH
Confidence 8999986643
No 199
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=70.65 E-value=6.6 Score=37.52 Aligned_cols=46 Identities=24% Similarity=0.256 Sum_probs=34.0
Q ss_pred CCCCeEeecccCchHHH--HHHhhcCCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 215 ARPLRCLEVFAGAGGLS--RGLDKSGVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s--~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
+.++++-|-|||.|.|- +||--..-..-++|.|+|+.|++.-++|.
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 47899999999999974 66543332367899999999999999986
No 200
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=70.44 E-value=3.4 Score=37.98 Aligned_cols=114 Identities=16% Similarity=0.201 Sum_probs=60.4
Q ss_pred CCCeEeecccCchHHHHHHhhcC-CCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSG-VARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 294 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG-~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~ 294 (487)
...+++||.|+.||++.-+.+.+ -...++|+|+.+. ...+....+.+|+.+. .....+...... ..+
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~------~~~~~~~~i~~d~~~~---~~~~~i~~~~~~---~~~ 90 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM------DPLQNVSFIQGDITNP---ENIKDIRKLLPE---SGE 90 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST------GS-TTEEBTTGGGEEE---EHSHHGGGSHGT---TTC
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc------ccccceeeeecccchh---hHHHhhhhhccc---ccc
Confidence 45899999999999999988777 2257899999977 2334555566666321 000011111110 124
Q ss_pred cccEEE--ccCCCcCcccCCccCCcccccchhHHHHHHHHH-hhhcCCcE-EEEecCc
Q psy13720 295 EVEMLC--GGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSY-CDYYRPRF-FLLENVR 348 (487)
Q Consensus 295 ~vd~i~--ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~-v~~~~P~~-~ilENV~ 348 (487)
.+|+|+ ++|+|++...... .....|....+.+ ++.++|.- |++--..
T Consensus 91 ~~dlv~~D~~~~~~g~~~~d~-------~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 91 KFDLVLSDMAPNVSGDRNIDE-------FISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp SESEEEE-------SSHHSSH-------HHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred CcceeccccccCCCCchhhHH-------HHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 688877 4567776643221 1122444444444 35678887 6665443
No 201
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=69.98 E-value=18 Score=34.81 Aligned_cols=44 Identities=5% Similarity=-0.003 Sum_probs=33.4
Q ss_pred CCCeEeecccCchHHHHHHhhcC-C-CcEEEEEcCcHHHHHHHHHh
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSG-V-ARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG-~-~~~~~a~e~~~~a~~t~~~N 259 (487)
...++||+=||.|.++..+.+.. . ...+.++|+++.+++.-+.+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~ 98 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQH 98 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHH
Confidence 45679999999999988876531 0 12588999999988776665
No 202
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=69.80 E-value=16 Score=36.79 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=41.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCC-CcEEEEEcCcHHHHHHHHH----hCCCCc--eeccchHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKM----NNPGCT--VFVDDCNK 272 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~-~~~~~a~e~~~~a~~t~~~----N~p~~~--~~~~di~~ 272 (487)
..-++|||=||.|-.+.-|..++. ...++++|+++.+++..+. .+|+.. .+++|+.+
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 446799999999999998887741 1368999999987655443 356644 35677654
No 203
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=69.12 E-value=19 Score=35.35 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=32.4
Q ss_pred CCCCeEeecccCchHHHHHHh-hcCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLD-KSGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~-~aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
+..-++||+-||.|..+.-+. ..|....+.++|+++..++.-+.|
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~ 121 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARAN 121 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHH
Confidence 456689999999987655333 335322588999999988877765
No 204
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=69.05 E-value=10 Score=40.54 Aligned_cols=45 Identities=16% Similarity=0.145 Sum_probs=35.8
Q ss_pred cCCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhC
Q psy13720 214 IARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 214 ~~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~ 260 (487)
++..-++||+-||.|+++.-+... |. .+.++|+++.+++.-+.|.
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~--~v~gvDiS~~~l~~A~~~~ 309 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDV--HVVGIDLSVNMISFALERA 309 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCC--EEEEEECCHHHHHHHHHHh
Confidence 345678999999999988877653 54 5899999999988776664
No 205
>KOG1500|consensus
Probab=68.85 E-value=10 Score=38.53 Aligned_cols=41 Identities=32% Similarity=0.289 Sum_probs=34.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFK 257 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~ 257 (487)
..-.|+|.=||.|-+|.=..+||. +-++|+|.+.-|..+-+
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA-~~vYAvEAS~MAqyA~~ 217 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGA-KKVYAVEASEMAQYARK 217 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCc-ceEEEEehhHHHHHHHH
Confidence 344589999999999999999997 89999999987765433
No 206
>PRK13699 putative methylase; Provisional
Probab=68.59 E-value=8.4 Score=37.15 Aligned_cols=41 Identities=24% Similarity=0.170 Sum_probs=33.2
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHH
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKM 258 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~ 258 (487)
+.=.|||-|||.|....+..+.|- -.+++|+++.-.+.-..
T Consensus 163 ~g~~vlDpf~Gsgtt~~aa~~~~r--~~~g~e~~~~y~~~~~~ 203 (227)
T PRK13699 163 PNAIVLDPFAGSGSTCVAALQSGR--RYIGIELLEQYHRAGQQ 203 (227)
T ss_pred CCCEEEeCCCCCCHHHHHHHHcCC--CEEEEecCHHHHHHHHH
Confidence 334699999999999999999994 56799999987765443
No 207
>KOG2133|consensus
Probab=65.04 E-value=5 Score=45.62 Aligned_cols=107 Identities=13% Similarity=0.106 Sum_probs=65.3
Q ss_pred CCCceEEEEEEEEecCCCCCCCCCceEEEEEeeeccccCC-CC---------------ccccccCCCceEEecccc-eee
Q psy13720 68 PAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTH-RS---------------VEFTYQLDLNKLYWSDEE-EQV 130 (487)
Q Consensus 68 ~~P~~IgrI~~i~~~~~~~~~~~~~~~v~v~wfyRp~dt~-~~---------------~~~~~~~d~reLF~S~~~-d~v 130 (487)
.+|+.|+.|-.+...++ + ..+.++.-.+.|.+|+. .+ ....-....++||.+... .+-
T Consensus 159 ~~p~lia~~~~~~~~Kr----~-~~~~~k~s~~~r~~d~Pet~y~~~m~pe~Ar~e~~P~~~pq~~sq~l~~s~l~~i~q 233 (1229)
T KOG2133|consen 159 PEPYLIAAICGFKYTKR----D-DRQVVKLSFYFRADDIPETGYLNLMKPERARLEINPHLCPQPLSQELFNSELQGITQ 233 (1229)
T ss_pred CCccccccccCcccccc----c-cccccccccccccccCcccccccccCchhhhhccCCccCCCcchhhhhcccccCCCC
Confidence 37777766654443332 1 23445566667777764 01 000012356889999877 788
Q ss_pred cccceeeeeEEEeecCCcccc--cccccCCCCeeEEEEeecCCCCccccCc
Q psy13720 131 SLSDVQGKCFVVCEDNLQIST--DRWSSRGPHRFYFNEAYNSKTEEFTNLP 179 (487)
Q Consensus 131 p~~~I~GKC~V~~~~~~~~~~--~~~~~~~~d~Fy~~~~Yd~~~~~f~~~P 179 (487)
|.+|..|||.+.+..+....- ..-...+-+.||+...|.+......+++
T Consensus 234 ppscp~gk~~~~~skd~~h~~~~n~p~~ld~~i~fk~agglpps~k~a~P~ 284 (1229)
T KOG2133|consen 234 PPSCPRGKGIAEYSKDVRHGGNTNAPFSLDNDIFFKCAGGLPPSTKPASPT 284 (1229)
T ss_pred CCcCCCCCceEEeecccccCCccCCCCcccceeeeecccCCCCCCCCCCCc
Confidence 999999999999666542211 1122345577888888888777666544
No 208
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=64.29 E-value=13 Score=38.71 Aligned_cols=74 Identities=12% Similarity=0.099 Sum_probs=45.7
Q ss_pred EEEEEcCcHHHHHHHHHhCCCCc------eeccchHHHHHHhhchhhhccccccCCCC-CcccEEEccCCCcCcccCCcc
Q psy13720 242 STWAIEFDSAAATAFKMNNPGCT------VFVDDCNKILQRVIDNEVCDDKKQKLPRK-GEVEMLCGGPPCQGFSGMNRF 314 (487)
Q Consensus 242 ~~~a~e~~~~a~~t~~~N~p~~~------~~~~di~~~~~~~~~~~~~~~~~~~~p~~-~~vd~i~ggpPCq~fS~~~~~ 314 (487)
..+++|+|+..++.-+.|--.+. ....|+.++ +.+ ..+|+|+.-||- |-+
T Consensus 256 ~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l-----------------~~~~~~~gvvI~NPPY------GeR 312 (381)
T COG0116 256 IIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDL-----------------KEPLEEYGVVISNPPY------GER 312 (381)
T ss_pred eEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhC-----------------CCCCCcCCEEEeCCCc------chh
Confidence 47799999999999888854332 233344332 222 578999999994 210
Q ss_pred CCcccccchhHHHHHHHHHhhhcCCc
Q psy13720 315 NQRQYSAFKNSLIVSYLSYCDYYRPR 340 (487)
Q Consensus 315 ~~~~~~d~r~~L~~~~l~~v~~~~P~ 340 (487)
-+....-..|+.+|.+.++..-+.
T Consensus 313 --lg~~~~v~~LY~~fg~~lk~~~~~ 336 (381)
T COG0116 313 --LGSEALVAKLYREFGRTLKRLLAG 336 (381)
T ss_pred --cCChhhHHHHHHHHHHHHHHHhcC
Confidence 011112335888888888666544
No 209
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=64.14 E-value=14 Score=37.87 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=39.8
Q ss_pred cCCCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccc
Q psy13720 214 IARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDD 269 (487)
Q Consensus 214 ~~~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~d 269 (487)
+.+..+++||=|+.||++.=+.+.|. -|+|||..+-+-. -.+.|.+.++.+|
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~--~V~AVD~g~l~~~--L~~~~~V~h~~~d 260 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM--FVTAVDNGPMAQS--LMDTGQVEHLRAD 260 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC--EEEEEechhcCHh--hhCCCCEEEEecc
Confidence 35778999999999999999999996 6889997765433 2456666666554
No 210
>PLN03075 nicotianamine synthase; Provisional
Probab=63.72 E-value=47 Score=33.44 Aligned_cols=45 Identities=16% Similarity=0.024 Sum_probs=34.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCC--CcEEEEEcCcHHHHHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGV--ARSTWAIEFDSAAATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~--~~~~~a~e~~~~a~~t~~~N~ 260 (487)
.+=+|+|+=||.||++.-+-.++. .-.+.++|+|+.|++.-+++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~ 169 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLV 169 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHh
Confidence 455699999999988766554332 235789999999998877776
No 211
>KOG1270|consensus
Probab=63.37 E-value=9.1 Score=37.68 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=36.9
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
.++++|+=||.|=+|.=|.+.|. .|.++|..++++++++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga--~V~GID~s~~~V~vA~~h 130 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA--QVTGIDASDDMVEVANEH 130 (282)
T ss_pred CceEEEeccCccccchhhHhhCC--eeEeecccHHHHHHHHHh
Confidence 45699999999999999999995 789999999999998865
No 212
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=62.05 E-value=23 Score=33.26 Aligned_cols=125 Identities=16% Similarity=0.114 Sum_probs=71.4
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHH-----HHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCC
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAAT-----AFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK 293 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~-----t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~ 293 (487)
.+||+-||-|.+...+...--.....++|+....+. .-+.+.++..++++|...++... + .+
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~------------~-~~ 86 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRL------------F-PP 86 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHH------------S-TT
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhc------------c-cC
Confidence 699999999999888765433357899999986554 33346777788888887765432 2 24
Q ss_pred CcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhC
Q psy13720 294 GEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQI 369 (487)
Q Consensus 294 ~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~ 369 (487)
+.+|-|..-+|+.=+-.. +.+.|-.+ ..++..+. ..++|.-.+. +.+.....+..+++.|.+.
T Consensus 87 ~~v~~i~i~FPDPWpK~r-H~krRl~~---~~fl~~~~---~~L~~gG~l~------~~TD~~~y~~~~~~~~~~~ 149 (195)
T PF02390_consen 87 GSVDRIYINFPDPWPKKR-HHKRRLVN---PEFLELLA---RVLKPGGELY------FATDVEEYAEWMLEQFEES 149 (195)
T ss_dssp TSEEEEEEES-----SGG-GGGGSTTS---HHHHHHHH---HHEEEEEEEE------EEES-HHHHHHHHHHHHHH
T ss_pred CchheEEEeCCCCCcccc-hhhhhcCC---chHHHHHH---HHcCCCCEEE------EEeCCHHHHHHHHHHHHhc
Confidence 688999999998744332 11112211 22333333 3345654442 3345556777888888763
No 213
>KOG1122|consensus
Probab=61.09 E-value=18 Score=37.89 Aligned_cols=81 Identities=20% Similarity=0.326 Sum_probs=56.8
Q ss_pred CCCCeEeecccCchHHHHH----HhhcCCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhcc
Q psy13720 215 ARPLRCLEVFAGAGGLSRG----LDKSGVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDD 285 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~G----l~~aG~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~ 285 (487)
++..|++|+||-.||=+.- ++..| +++|+|.+...+.....|.+ ++.+.+.|..++.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G---~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~----------- 305 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTG---VIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFP----------- 305 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCc---eEEecccchHHHHHHHHHHHHhCCCceEEEccCccccc-----------
Confidence 4678999999999996543 34456 58999999999999888854 4555555554331
Q ss_pred ccccCCCCCcccEEEccCCCcCcccCC
Q psy13720 286 KKQKLPRKGEVEMLCGGPPCQGFSGMN 312 (487)
Q Consensus 286 ~~~~~p~~~~vd~i~ggpPCq~fS~~~ 312 (487)
...+| +.+|=|.---||.|--..+
T Consensus 306 -~~~~~--~~fDRVLLDAPCSGtgvi~ 329 (460)
T KOG1122|consen 306 -EKEFP--GSFDRVLLDAPCSGTGVIS 329 (460)
T ss_pred -ccccC--cccceeeecCCCCCCcccc
Confidence 11233 3789888899999854433
No 214
>KOG1271|consensus
Probab=59.30 E-value=4.4 Score=37.71 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=34.1
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHH
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATA 255 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t 255 (487)
+||||=||-|-+-.+|++.||...+.++|.++.|++.
T Consensus 70 ~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~L 106 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVEL 106 (227)
T ss_pred ceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHH
Confidence 8999999999999999999995458999999999986
No 215
>KOG0820|consensus
Probab=59.13 E-value=30 Score=34.42 Aligned_cols=77 Identities=26% Similarity=0.309 Sum_probs=56.4
Q ss_pred CcCCCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCc------eeccchHHHHHHhhchhhhccc
Q psy13720 213 SIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCT------VFVDDCNKILQRVIDNEVCDDK 286 (487)
Q Consensus 213 ~~~~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~------~~~~di~~~~~~~~~~~~~~~~ 286 (487)
.++++=.+|++=-|.|.|+.-+-++| +.|.|+|+|+.-+.-....+.++. ++.+|. .
T Consensus 55 ~~k~tD~VLEvGPGTGnLT~~lLe~~--kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~------------l--- 117 (315)
T KOG0820|consen 55 DLKPTDVVLEVGPGTGNLTVKLLEAG--KKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDF------------L--- 117 (315)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHhc--CeEEEEecCcHHHHHHHHHhcCCCccceeeEEeccc------------c---
Confidence 34566779999999999999999999 478899999998887777765554 333332 1
Q ss_pred cccCCCCCcccEEEccCCCcCcc
Q psy13720 287 KQKLPRKGEVEMLCGGPPCQGFS 309 (487)
Q Consensus 287 ~~~~p~~~~vd~i~ggpPCq~fS 309 (487)
...+| -.|+.+.-.|-|=-|
T Consensus 118 K~d~P---~fd~cVsNlPyqISS 137 (315)
T KOG0820|consen 118 KTDLP---RFDGCVSNLPYQISS 137 (315)
T ss_pred cCCCc---ccceeeccCCccccC
Confidence 12345 578888888876555
No 216
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=58.04 E-value=1.7 Score=45.11 Aligned_cols=72 Identities=14% Similarity=0.014 Sum_probs=52.5
Q ss_pred CCCceEEEEEEEEecCCCCCCCCCceEEEEEeeeccccCCCCccccccCCCceEEecccceeecccceeeeeEEEeecCC
Q psy13720 68 PAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNL 147 (487)
Q Consensus 68 ~~P~~IgrI~~i~~~~~~~~~~~~~~~v~v~wfyRp~dt~~~~~~~~~~d~reLF~S~~~d~vp~~~I~GKC~V~~~~~~ 147 (487)
.+...++.+...|.+.+ ...+.-++|+||+..+..... ...-.+++......+....+...+.|.|.+..+.
T Consensus 291 ~~~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (371)
T COG5076 291 EEVPDYYKDIRDPMDLS------TKELKLRNNYYRPEETFVRDA--KLFFDNCVMYNGEVTDYYKNANVLEDFVIKKTRL 362 (371)
T ss_pred ccccchhhhhhcccccc------cchhhhhcccCCCcccccccc--chhhhcccccchhhhhhhhhccchhhhHhhhhhh
Confidence 34447777888887765 334458999999997643322 2356678888888899999999999999877643
No 217
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=54.96 E-value=1.5e+02 Score=32.12 Aligned_cols=129 Identities=15% Similarity=0.071 Sum_probs=75.9
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHH-----HHHhCCCCceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATA-----FKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t-----~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
....+||+-||-|++...+...--.....++|+....+.. .+.+..+..+++.|+..+.. .+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~-------------~~ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILN-------------DL 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHH-------------hc
Confidence 4567999999999998888766433567899999764332 22344455566777655431 23
Q ss_pred CCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCC
Q psy13720 291 PRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIG 370 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~G 370 (487)
| .+.+|-|..-+|+.=+-.. +.+.|-.+ -.++..+ ...++|.-.+. +.+.....+...+..+.+.+
T Consensus 414 ~-~~sv~~i~i~FPDPWpKkr-h~krRl~~---~~fl~~~---~~~Lk~gG~i~------~~TD~~~y~~~~~~~~~~~~ 479 (506)
T PRK01544 414 P-NNSLDGIYILFPDPWIKNK-QKKKRIFN---KERLKIL---QDKLKDNGNLV------FASDIENYFYEAIELIQQNG 479 (506)
T ss_pred C-cccccEEEEECCCCCCCCC-CccccccC---HHHHHHH---HHhcCCCCEEE------EEcCCHHHHHHHHHHHHhCC
Confidence 3 3478999999998655432 21122211 1223332 23456654332 23344556777777777665
Q ss_pred C
Q psy13720 371 Y 371 (487)
Q Consensus 371 Y 371 (487)
+
T Consensus 480 ~ 480 (506)
T PRK01544 480 N 480 (506)
T ss_pred C
Confidence 3
No 218
>KOG1499|consensus
Probab=53.67 E-value=20 Score=36.68 Aligned_cols=44 Identities=34% Similarity=0.353 Sum_probs=35.1
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHH---HHHHHHhC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAA---ATAFKMNN 260 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a---~~t~~~N~ 260 (487)
+.-+|||.=||.|-+|+=-..||. +-++|+|.+.-| .+..+.|.
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA-~~V~aVe~S~ia~~a~~iv~~N~ 106 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGA-RKVYAVEASSIADFARKIVKDNG 106 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCc-ceEEEEechHHHHHHHHHHHhcC
Confidence 556799999999999998899996 789999988765 33444454
No 219
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=53.19 E-value=19 Score=33.73 Aligned_cols=52 Identities=31% Similarity=0.233 Sum_probs=38.4
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhC--C---CCceeccchH
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN--P---GCTVFVDDCN 271 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~--p---~~~~~~~di~ 271 (487)
=++.||=+|.|-+|.=...+ .+-++|+|.||..+.....|. | +..+..+|..
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~ 90 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDAR 90 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccc
Confidence 34889999999998766555 378899999999988888883 2 3445555543
No 220
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=51.98 E-value=41 Score=32.40 Aligned_cols=103 Identities=15% Similarity=0.088 Sum_probs=73.3
Q ss_pred CCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKG 294 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~ 294 (487)
..-+++||=||.|-.+.=|.+- . .-.+.++|.+++-++.-+..-|++....+|+..+. | ..
T Consensus 30 ~~~~v~DLGCGpGnsTelL~~RwP-~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~----------------p-~~ 91 (257)
T COG4106 30 RPRRVVDLGCGPGNSTELLARRWP-DAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWK----------------P-EQ 91 (257)
T ss_pred ccceeeecCCCCCHHHHHHHHhCC-CCeEeeccCCHHHHHHHHHhCCCCceecccHhhcC----------------C-CC
Confidence 6778999999999988877653 2 25789999999999988888999998888987651 1 23
Q ss_pred cccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchh
Q psy13720 295 EVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFV 351 (487)
Q Consensus 295 ~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~ 351 (487)
+.|+|. |.|--.. .-| ...-+-|++..+.|--++.=.+|+=+
T Consensus 92 ~~dllf--------aNAvlqW---lpd----H~~ll~rL~~~L~Pgg~LAVQmPdN~ 133 (257)
T COG4106 92 PTDLLF--------ANAVLQW---LPD----HPELLPRLVSQLAPGGVLAVQMPDNL 133 (257)
T ss_pred ccchhh--------hhhhhhh---ccc----cHHHHHHHHHhhCCCceEEEECCCcc
Confidence 567774 3332111 111 12335578899999999988888744
No 221
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=51.75 E-value=30 Score=36.13 Aligned_cols=45 Identities=22% Similarity=0.308 Sum_probs=36.0
Q ss_pred CCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP 261 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p 261 (487)
++.-++||+-||.|+++.-+... |. .+.++|+++..++.-+.+..
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~--~V~giDlS~~~l~~A~~~~~ 211 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV--SVVGVTISAEQQKLAQERCA 211 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC--EEEEEeCCHHHHHHHHHHhc
Confidence 45568999999999999877654 64 57899999999887777653
No 222
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=51.52 E-value=1.2e+02 Score=29.34 Aligned_cols=79 Identities=15% Similarity=0.148 Sum_probs=56.8
Q ss_pred CeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHH-----HHhCCCCceeccchHHHHHHhhchhhhccccccCCC
Q psy13720 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAF-----KMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPR 292 (487)
Q Consensus 218 l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~-----~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~ 292 (487)
..+||+-||.|.+-.++...--..-..++|+-...+... +.+.++..+++.|...++.. ++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~-------------~~~ 116 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDY-------------LIP 116 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHh-------------cCC
Confidence 569999999999998887765434578999987644332 22344677889999888643 344
Q ss_pred CCcccEEEccCCCcCcc
Q psy13720 293 KGEVEMLCGGPPCQGFS 309 (487)
Q Consensus 293 ~~~vd~i~ggpPCq~fS 309 (487)
.|++|-|..-+|+.=+-
T Consensus 117 ~~sl~~I~i~FPDPWpK 133 (227)
T COG0220 117 DGSLDKIYINFPDPWPK 133 (227)
T ss_pred CCCeeEEEEECCCCCCC
Confidence 56888898899985443
No 223
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=49.35 E-value=36 Score=31.18 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=31.8
Q ss_pred CCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHh
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N 259 (487)
.+..+||+|=||+|-.++.+... |. ..+++.|.++ +++..+.|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~-~~Vv~TD~~~-~l~~l~~N 87 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGA-ARVVLTDYNE-VLELLRRN 87 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T--SEEEEEE-S--HHHHHHHH
T ss_pred cCCceEEEECCccchhHHHHHhccCC-ceEEEeccch-hhHHHHHH
Confidence 46789999999999777777666 54 5788999999 88888877
No 224
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=48.37 E-value=2.6e+02 Score=29.26 Aligned_cols=135 Identities=16% Similarity=0.140 Sum_probs=78.7
Q ss_pred HhhcCCCcEEEEEcCcHHHHHHHHHh------------CCCCceeccchHHHHHHhhchhhhccccccCCCCCcccEEEc
Q psy13720 234 LDKSGVARSTWAIEFDSAAATAFKMN------------NPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCG 301 (487)
Q Consensus 234 l~~aG~~~~~~a~e~~~~a~~t~~~N------------~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~vd~i~g 301 (487)
++.-|+ +-+.-||.||.-++..++| .|...++++|.-.+++... ..+|+++.
T Consensus 308 lkyP~~-~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~---------------~~fD~vIV 371 (508)
T COG4262 308 LKYPQV-EQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAA---------------DMFDVVIV 371 (508)
T ss_pred HhCCCc-ceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhc---------------ccccEEEE
Confidence 344566 7788999999988877643 2556788889888765431 14677777
Q ss_pred cCCCcCcccCCccCCcccccchhHHHHHHHHHhh-hcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCCeeEEEEEec
Q psy13720 302 GPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD-YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQA 380 (487)
Q Consensus 302 gpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~-~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a 380 (487)
-.|=..--..+| -++ .+|-+.++ .+++.-.++-.-..-. -...+|-.|...+++.||++..-.+-
T Consensus 372 Dl~DP~tps~~r----lYS-------~eFY~ll~~~l~e~Gl~VvQags~y--~tp~vfw~i~aTik~AG~~~~Pyhv~- 437 (508)
T COG4262 372 DLPDPSTPSIGR----LYS-------VEFYRLLSRHLAETGLMVVQAGSPY--FTPRVFWRIDATIKSAGYRVWPYHVH- 437 (508)
T ss_pred eCCCCCCcchhh----hhh-------HHHHHHHHHhcCcCceEEEecCCCc--cCCceeeeehhHHHhCcceeeeeEEe-
Confidence 766332222221 121 23333333 3455544432221111 12346778899999999998765443
Q ss_pred cCCCCCCcccEEEEEEEcCCCC
Q psy13720 381 GHFGVSQTRRRAIVLAAAPGEV 402 (487)
Q Consensus 381 ~~yGvPQ~R~R~fiia~~~~~~ 402 (487)
||..=+.=|++|+..+..
T Consensus 438 ----VPTFGeWGf~l~~~~~~~ 455 (508)
T COG4262 438 ----VPTFGEWGFILAAPGDAD 455 (508)
T ss_pred ----cCcccccceeecccccCC
Confidence 333345558898765543
No 225
>PHA01634 hypothetical protein
Probab=47.07 E-value=38 Score=29.79 Aligned_cols=45 Identities=11% Similarity=-0.094 Sum_probs=40.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNP 261 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p 261 (487)
..-+|+|+=|++|..++=|...|. +-++|+|.++.-.+.++.|..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GA-K~Vva~E~~~kl~k~~een~k 72 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGA-SFVVQYEKEEKLRKKWEEVCA 72 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCc-cEEEEeccCHHHHHHHHHHhh
Confidence 445799999999999999999997 889999999999999988753
No 226
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=46.82 E-value=32 Score=32.75 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=46.3
Q ss_pred cCCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHHhCC-----CCceeccchHHHHHHhhchhhhcccc
Q psy13720 214 IARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKMNNP-----GCTVFVDDCNKILQRVIDNEVCDDKK 287 (487)
Q Consensus 214 ~~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~N~p-----~~~~~~~di~~~~~~~~~~~~~~~~~ 287 (487)
+++..++||+-||+|=++.-+... |-.-.+.++|+++.-++.-+.|.. +..+..+|...
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~--------------- 134 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSE--------------- 134 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGG---------------
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhh---------------
Confidence 567889999999999777666543 421247899999987766665532 33455555321
Q ss_pred ccCCCCCcccEEEccCCC
Q psy13720 288 QKLPRKGEVEMLCGGPPC 305 (487)
Q Consensus 288 ~~~p~~~~vd~i~ggpPC 305 (487)
..+..+.+|.|+.+.-|
T Consensus 135 -g~~~~apfD~I~v~~a~ 151 (209)
T PF01135_consen 135 -GWPEEAPFDRIIVTAAV 151 (209)
T ss_dssp -TTGGG-SEEEEEESSBB
T ss_pred -ccccCCCcCEEEEeecc
Confidence 12334568988877655
No 227
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=42.38 E-value=58 Score=28.54 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=33.0
Q ss_pred CCCCeEeecccCchHHHHHHhh-----cCCCcEEEEEcCcHHHHHHHHH
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDK-----SGVARSTWAIEFDSAAATAFKM 258 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~-----aG~~~~~~a~e~~~~a~~t~~~ 258 (487)
.+..+++|+.||-|=++.-|.. . ..--+.++|.++...+.-..
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHH
Confidence 3678899999999988888776 3 22367899999887665543
No 228
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=41.78 E-value=79 Score=24.96 Aligned_cols=17 Identities=6% Similarity=0.061 Sum_probs=12.3
Q ss_pred CCCCceEEEEEEEEecC
Q psy13720 67 TPAPFGIGYIVAIFKKK 83 (487)
Q Consensus 67 ~~~P~~IgrI~~i~~~~ 83 (487)
..+-+|+|+|+......
T Consensus 24 ~~~dWWmg~Vi~~~gga 40 (75)
T PF11302_consen 24 QDKDWWMGQVIHCEGGA 40 (75)
T ss_pred CCCCcEEEEEEEEeccc
Confidence 45668999998765543
No 229
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=40.04 E-value=63 Score=32.33 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=34.8
Q ss_pred CcCCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHHH
Q psy13720 213 SIARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFKM 258 (487)
Q Consensus 213 ~~~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~~ 258 (487)
.+++..++||+=||-||++.=+... |. .|.++++++...+-.+.
T Consensus 69 ~L~~G~~lLDiGCGWG~l~~~aA~~y~v--~V~GvTlS~~Q~~~~~~ 113 (283)
T COG2230 69 GLKPGMTLLDIGCGWGGLAIYAAEEYGV--TVVGVTLSEEQLAYAEK 113 (283)
T ss_pred CCCCCCEEEEeCCChhHHHHHHHHHcCC--EEEEeeCCHHHHHHHHH
Confidence 5568899999999999998665443 64 67899999987776655
No 230
>KOG2361|consensus
Probab=38.92 E-value=37 Score=33.13 Aligned_cols=41 Identities=27% Similarity=0.286 Sum_probs=33.6
Q ss_pred eEeecccCchHHHHHHhhc----CCCcEEEEEcCcHHHHHHHHHhCC
Q psy13720 219 RCLEVFAGAGGLSRGLDKS----GVARSTWAIEFDSAAATAFKMNNP 261 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~a----G~~~~~~a~e~~~~a~~t~~~N~p 261 (487)
+++++=||+|-+..=+-+. ++ .++|+|.++.|++.++.|-.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l--~v~acDfsp~Ai~~vk~~~~ 118 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRL--KVYACDFSPRAIELVKKSSG 118 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCe--EEEEcCCChHHHHHHHhccc
Confidence 7899999999887776442 34 68999999999999998753
No 231
>KOG2198|consensus
Probab=38.41 E-value=39 Score=34.89 Aligned_cols=92 Identities=15% Similarity=0.136 Sum_probs=58.3
Q ss_pred CcCCCCeEeecccCchHHHHHHhhcCCCc----EEEEEcCcHHHHHHHHHhC-----CCCceeccchHHHHHHhhchhhh
Q psy13720 213 SIARPLRCLEVFAGAGGLSRGLDKSGVAR----STWAIEFDSAAATAFKMNN-----PGCTVFVDDCNKILQRVIDNEVC 283 (487)
Q Consensus 213 ~~~~~l~~ldLFsG~Gg~s~Gl~~aG~~~----~~~a~e~~~~a~~t~~~N~-----p~~~~~~~di~~~~~~~~~~~~~ 283 (487)
.+++.=+|||+||-.||=+.-+.++.+.. .+.|+|.|...+..+.+-. +...+.+.|+..+- ....
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p-----~~~~ 226 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFP-----NIYL 226 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecc-----cccc
Confidence 45677889999999999999988887633 6899999999888776532 22233333332221 1100
Q ss_pred ccccccCCCCCcccEEEccCCCcCcccC
Q psy13720 284 DDKKQKLPRKGEVEMLCGGPPCQGFSGM 311 (487)
Q Consensus 284 ~~~~~~~p~~~~vd~i~ggpPCq~fS~~ 311 (487)
. ..... ..-.+|=|..--||.+=|..
T Consensus 227 ~-~~~~~-~~~~fDrVLvDVPCS~Dgt~ 252 (375)
T KOG2198|consen 227 K-DGNDK-EQLKFDRVLVDVPCSGDGTL 252 (375)
T ss_pred c-cCchh-hhhhcceeEEecccCCCccc
Confidence 0 00000 11257888888999998654
No 232
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=37.64 E-value=61 Score=31.27 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=35.1
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
.-++|+.-||-|==..-|...|+ . |.++|+++.|++.+.+.
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~G~-~-V~GvDlS~~Ai~~~~~e 84 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSKGV-K-VIGIELSEKAVLSFFSQ 84 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhCCC-c-EEEEecCHHHHHHHHHH
Confidence 46899999999988888888998 3 88999999999987653
No 233
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=36.00 E-value=30 Score=34.15 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=30.2
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHh
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N 259 (487)
+.+|.|+|+|+..+.+.. .-++.+|+|+.-+..|+.-
T Consensus 28 ~yvEPF~Gggsv~l~~~~----~~~~lND~n~~Li~~~~~i 64 (266)
T TIGR00571 28 CLVEPFVGGGAVFFNLNP----KRYLLNDINEDLINLYKAI 64 (266)
T ss_pred EEEEecCCcchhheeecC----cEEEEecCCHHHHHHHHHH
Confidence 799999999998876642 2377899999999999853
No 234
>PRK05414 urocanate hydratase; Provisional
Probab=33.98 E-value=66 Score=34.66 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=36.0
Q ss_pred eecccCchHHH----HHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHH
Q psy13720 221 LEVFAGAGGLS----RGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQR 276 (487)
Q Consensus 221 ldLFsG~Gg~s----~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~ 276 (487)
+=|=||.|||+ ++...+|. +..++|+|+.+++. +....-......|+.+.+..
T Consensus 169 ~~lTaGLGGMgGAQPlA~~mag~--v~i~vEvd~~ri~k-R~~~gyld~~~~~Ldeal~~ 225 (556)
T PRK05414 169 LVLTAGLGGMGGAQPLAATMAGA--VCLAVEVDESRIDK-RLRTGYLDEKADDLDEALAL 225 (556)
T ss_pred EEEEecCCccccccHHHHHhcCc--eEEEEEECHHHHHH-HHhCCcceeEcCCHHHHHHH
Confidence 34568999887 66778886 67899999999886 33333344455566555443
No 235
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=33.93 E-value=72 Score=32.96 Aligned_cols=52 Identities=23% Similarity=0.598 Sum_probs=33.3
Q ss_pred cccEEEccCCCcCccc-CCc----------cCCcc-------c-----ccchhHHHHHHHHHhhhcCCcEEEEecCcc
Q psy13720 295 EVEMLCGGPPCQGFSG-MNR----------FNQRQ-------Y-----SAFKNSLIVSYLSYCDYYRPRFFLLENVRN 349 (487)
Q Consensus 295 ~vd~i~ggpPCq~fS~-~~~----------~~~~~-------~-----~d~r~~L~~~~l~~v~~~~P~~~ilENV~g 349 (487)
+|-+|.||||-++|-. ++- ..+.. . ..-|.+|+. ..++.++|++||+||+|-
T Consensus 43 ~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~~l~e~~~~Rs~lil---~t~~~fkPDi~IVd~~P~ 117 (400)
T COG4671 43 DILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDGDLEETKKLRSQLIL---STAETFKPDIFIVDKFPF 117 (400)
T ss_pred eEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCCCHHHHHHHHHHHHH---HHHHhcCCCEEEEecccc
Confidence 6778999999999986 221 00000 0 011344443 346788999999999983
No 236
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=33.41 E-value=66 Score=27.75 Aligned_cols=38 Identities=24% Similarity=0.289 Sum_probs=30.4
Q ss_pred EEEEecCcchhcccchhHHHHHHHHHHhCCCeeEE-EEEeccCCCCC
Q psy13720 341 FFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTF-GTLQAGHFGVS 386 (487)
Q Consensus 341 ~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~~-~~l~a~~yGvP 386 (487)
-+++||=+|= +......|.+.|-.++. .+-++++||+-
T Consensus 7 SvFlENk~GR--------L~~~~~~L~eagINiRA~tiAdt~dFGIi 45 (142)
T COG4747 7 SVFLENKPGR--------LASVANKLKEAGINIRAFTIADTGDFGII 45 (142)
T ss_pred EEEecCCcch--------HHHHHHHHHHcCCceEEEEeccccCcceE
Confidence 3688999885 34678889999999984 57899999963
No 237
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=30.30 E-value=5.3e+02 Score=25.27 Aligned_cols=105 Identities=14% Similarity=0.214 Sum_probs=66.5
Q ss_pred EEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchh-------hhc--cccccCC-----CCCcccEEEccCCCcC
Q psy13720 242 STWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNE-------VCD--DKKQKLP-----RKGEVEMLCGGPPCQG 307 (487)
Q Consensus 242 ~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~-------~~~--~~~~~~p-----~~~~vd~i~ggpPCq~ 307 (487)
-+.++|.|++.--....--+...-+.++..++++...... +.. .....+| ..+++|+++.|-|=.+
T Consensus 31 ~VLvVDaDpd~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~fk~~~~~~di~~e~~~e~~~~~LLvmGkie~~ 110 (255)
T COG3640 31 NVLVVDADPDSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMFKENPLVSDLPDEYLVENGDIDLLVMGKIEEG 110 (255)
T ss_pred eEEEEeCCCCCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCcccccccCcchhhhhHHHhhhcCCccEEEeccccCC
Confidence 5789999986544444333332445677777766543210 100 0011122 3457999998888444
Q ss_pred cccCCccCCcccccchhHHHHHHHHHhhhcCCcEEEEecCcchhccc
Q psy13720 308 FSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFK 354 (487)
Q Consensus 308 fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~~ilENV~gl~~~~ 354 (487)
-++. -=+-|.|+.++++-+...+=+++++--=.|+-++.
T Consensus 111 GeGC--------~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfg 149 (255)
T COG3640 111 GEGC--------ACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFG 149 (255)
T ss_pred CCcc--------cchHHHHHHHHHHHHhcccCcEEEEecccchhhhc
Confidence 4432 23567899999999999999999999888886653
No 238
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=29.12 E-value=3.1e+02 Score=26.02 Aligned_cols=120 Identities=17% Similarity=0.277 Sum_probs=71.5
Q ss_pred HHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCcccEEEc-cCCCcCcc-cCCccCCcccccchhHHH
Q psy13720 250 SAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCG-GPPCQGFS-GMNRFNQRQYSAFKNSLI 327 (487)
Q Consensus 250 ~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~vd~i~g-gpPCq~fS-~~~~~~~~~~~d~r~~L~ 327 (487)
..-+++|+++||+..++..|+.. ..+|.- +.+++.| +.|+++-- .... ..-+.-+.|+
T Consensus 23 ~~Fi~~yk~~~P~dev~~~DL~~---------------e~iP~l-d~~~~~a~~~~~~~~~t~~~~----~~~~~sd~l~ 82 (202)
T COG1182 23 DEFIETYKEKHPNDEVIERDLAA---------------EPIPHL-DEELLAAWFKPQAGEGTAEEK----EALARSDKLL 82 (202)
T ss_pred HHHHHHHHHhCCCCeEEEeeccc---------------CCCccc-CHHHHhcccCCccCCCCHHHH----HHHHHHHHHH
Confidence 45678999999998888777643 234422 3344443 56777652 2111 0111112333
Q ss_pred HHHHHHhhhcCCcEEEEecCcchhcccchhHHHHHHHHHHhCCCeeEEEEEeccCCCCCCcccEEEEEEEcCC
Q psy13720 328 VSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPG 400 (487)
Q Consensus 328 ~~~l~~v~~~~P~~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~~~~l~a~~yGvPQ~R~R~fiia~~~~ 400 (487)
.+|+ .-+.+|+ +..|.++.-...++..++.+...|=..+ ...-+--|+-+. +++++|.+|-|
T Consensus 83 ~ef~------aAD~vVi--~~PM~Nf~iPa~LK~yiD~i~~aGkTFk--Yte~Gp~GLl~g-KKv~~l~srGG 144 (202)
T COG1182 83 EEFL------AADKVVI--AAPMYNFNIPAQLKAYIDHIAVAGKTFK--YTENGPVGLLTG-KKVLILTSRGG 144 (202)
T ss_pred HHHH------hcCeEEE--EecccccCCCHHHHHHHHHHhcCCceEE--eccCCcccccCC-ceEEEEECCCC
Confidence 3332 3455555 2345555556788999999998886655 344455566666 89999998876
No 239
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=28.55 E-value=1e+02 Score=33.11 Aligned_cols=53 Identities=23% Similarity=0.381 Sum_probs=36.3
Q ss_pred eecccCchHHH----HHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHH
Q psy13720 221 LEVFAGAGGLS----RGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQR 276 (487)
Q Consensus 221 ldLFsG~Gg~s----~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~ 276 (487)
+=|=||.|||+ ++...+|. +..++|+|+.+++. +....-......|+.+.+..
T Consensus 160 ~~lTaGLGGMgGAQPlA~~mag~--v~i~vEvd~~ri~k-R~~~gyld~~~~~ldeal~~ 216 (545)
T TIGR01228 160 WVLTAGLGGMGGAQPLAVTMNGG--VSIAVEVDESRIDK-RLETKYCDEQTDSLDEALAR 216 (545)
T ss_pred EEEEeCCCccccccHHHHHHcCc--eEEEEEECHHHHHH-HHhcCcceeEcCCHHHHHHH
Confidence 44668999887 66778886 67899999999886 33333344455566665543
No 240
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=28.15 E-value=93 Score=30.60 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=31.5
Q ss_pred CCCeEeecccCchH----HHHHHhhcC-----CCcEEEEEcCcHHHHHHHHHh
Q psy13720 216 RPLRCLEVFAGAGG----LSRGLDKSG-----VARSTWAIEFDSAAATAFKMN 259 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg----~s~Gl~~aG-----~~~~~~a~e~~~~a~~t~~~N 259 (487)
.+++++|+=||.|- ++.-+...+ ..--+.|+|+++.+++.-+.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~ 151 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG 151 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC
Confidence 56899999999995 333343321 112589999999999887765
No 241
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=28.12 E-value=46 Score=32.85 Aligned_cols=33 Identities=24% Similarity=0.339 Sum_probs=28.0
Q ss_pred eEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHH
Q psy13720 219 RCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAA 253 (487)
Q Consensus 219 ~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~ 253 (487)
.+.|||||.|-.+.=|..+|- -+.|+|+....-
T Consensus 30 ~f~DiFaGtGVV~~~fkk~~n--~iiaNDle~ysy 62 (330)
T COG3392 30 IFCDIFAGTGVVGRFFKKAGN--KIIANDLEYYSY 62 (330)
T ss_pred eeeeeccCccHHHHHHHHhcc--hhhhchHHHHHH
Confidence 699999999999999999995 467899876543
No 242
>PF08940 DUF1918: Domain of unknown function (DUF1918); InterPro: IPR015035 This domain is found in various hypothetical bacterial proteins, and has no known function. ; PDB: 2A7Y_A.
Probab=28.06 E-value=1e+02 Score=23.11 Aligned_cols=27 Identities=19% Similarity=-0.005 Sum_probs=16.2
Q ss_pred CCCCceEEEEEEEEecCCCCCCCCCceEEEEEee
Q psy13720 67 TPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKF 100 (487)
Q Consensus 67 ~~~P~~IgrI~~i~~~~~~~~~~~~~~~v~v~wf 100 (487)
.++|-..|.|+++.-. .+..-+.|+|-
T Consensus 16 vg~~~r~GeIveV~g~-------dG~PPY~VRw~ 42 (58)
T PF08940_consen 16 VGQPDRHGEIVEVRGP-------DGSPPYLVRWD 42 (58)
T ss_dssp TS--EEEEEEEE-S-S-------SS-S-EEEEET
T ss_pred CCCCCcEeEEEEEECC-------CCCCCEEEEec
Confidence 5778899999997543 26667889994
No 243
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=28.04 E-value=1e+02 Score=33.33 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=31.8
Q ss_pred ecccCchHHH----HHHhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHH
Q psy13720 222 EVFAGAGGLS----RGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQR 276 (487)
Q Consensus 222 dLFsG~Gg~s----~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~ 276 (487)
=|=||.|||+ ++...+|. +...+|+|+.+++.-. ...-......|+.+.+..
T Consensus 160 ~lTaGLGGMgGAQplA~~m~g~--v~l~vEvd~~ri~kR~-~~g~ld~~~~~ldea~~~ 215 (546)
T PF01175_consen 160 FLTAGLGGMGGAQPLAATMAGG--VGLIVEVDPSRIEKRL-EQGYLDEVTDDLDEALAR 215 (546)
T ss_dssp EEEE--STTCCHHHHHHHHTT---EEEEEES-HHHHHHHH-HTTSSSEEESSHHHHHHH
T ss_pred EEEecccccccchHHHHHhcCc--eEEEEEECHHHHHHHH-hCCCeeEEcCCHHHHHHH
Confidence 3557888876 66778886 6789999999988632 322344555666665544
No 244
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=27.66 E-value=1.6e+02 Score=25.51 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=38.2
Q ss_pred ccCchHHHHH----HhhcCCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCcccEE
Q psy13720 224 FAGAGGLSRG----LDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEML 299 (487)
Q Consensus 224 FsG~Gg~s~G----l~~aG~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~vd~i 299 (487)
.-|+||++.+ |...|+ +-+..+.-+..-++.+...+++..+...+..++. ..+ .++|+|
T Consensus 17 viGaGg~ar~v~~~L~~~g~-~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~-------------~~~---~~~Div 79 (135)
T PF01488_consen 17 VIGAGGAARAVAAALAALGA-KEITIVNRTPERAEALAEEFGGVNIEAIPLEDLE-------------EAL---QEADIV 79 (135)
T ss_dssp EESSSHHHHHHHHHHHHTTS-SEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHC-------------HHH---HTESEE
T ss_pred EECCHHHHHHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHcCccccceeeHHHHH-------------HHH---hhCCeE
Confidence 3488888765 455687 5455566676666666666644433222333221 001 157999
Q ss_pred EccCCCcCc
Q psy13720 300 CGGPPCQGF 308 (487)
Q Consensus 300 ~ggpPCq~f 308 (487)
+...|....
T Consensus 80 I~aT~~~~~ 88 (135)
T PF01488_consen 80 INATPSGMP 88 (135)
T ss_dssp EE-SSTTST
T ss_pred EEecCCCCc
Confidence 988886544
No 245
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=27.63 E-value=2.5e+02 Score=28.10 Aligned_cols=20 Identities=10% Similarity=-0.042 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhcCCcEEEE
Q psy13720 325 SLIVSYLSYCDYYRPRFFLL 344 (487)
Q Consensus 325 ~L~~~~l~~v~~~~P~~~il 344 (487)
.++..+..-+..+.|+.+++
T Consensus 95 ~i~~~~~~~i~~~~~~~~vi 114 (306)
T cd05291 95 KIMKSIVPKIKASGFDGIFL 114 (306)
T ss_pred HHHHHHHHHHHHhCCCeEEE
Confidence 56788888888888987654
No 246
>PF09926 DUF2158: Uncharacterized small protein (DUF2158); InterPro: IPR019226 This entry represents a family of predominantly prokaryotic proteins with no known function.
Probab=27.36 E-value=79 Score=23.18 Aligned_cols=13 Identities=15% Similarity=0.342 Sum_probs=10.2
Q ss_pred EeeCCeEEeCCCc
Q psy13720 13 YKLKSCVYVNPDC 25 (487)
Q Consensus 13 y~vGD~V~v~p~~ 25 (487)
|++||.|.|..+.
T Consensus 1 f~~GDvV~LKSGG 13 (53)
T PF09926_consen 1 FKIGDVVQLKSGG 13 (53)
T ss_pred CCCCCEEEEccCC
Confidence 5789999997654
No 247
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=26.31 E-value=2e+02 Score=23.68 Aligned_cols=61 Identities=21% Similarity=0.269 Sum_probs=39.8
Q ss_pred ccCchHHHHHHh----hc--CCCcEEEEEcCcHHHHHHHHHhCCCCceeccchHHHHHHhhchhhhccccccCCCCCccc
Q psy13720 224 FAGAGGLSRGLD----KS--GVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVE 297 (487)
Q Consensus 224 FsG~Gg~s~Gl~----~a--G~~~~~~a~e~~~~a~~t~~~N~p~~~~~~~di~~~~~~~~~~~~~~~~~~~~p~~~~vd 297 (487)
+-|+|.++.... .. ++ ++++.+|.++...+.+...+. .. ...|+.+++.. .++|
T Consensus 5 iiG~G~~g~~~~~~~~~~~~~~-~v~~v~d~~~~~~~~~~~~~~-~~-~~~~~~~ll~~-----------------~~~D 64 (120)
T PF01408_consen 5 IIGAGSIGRRHLRALLRSSPDF-EVVAVCDPDPERAEAFAEKYG-IP-VYTDLEELLAD-----------------EDVD 64 (120)
T ss_dssp EESTSHHHHHHHHHHHHTTTTE-EEEEEECSSHHHHHHHHHHTT-SE-EESSHHHHHHH-----------------TTES
T ss_pred EECCcHHHHHHHHHHHhcCCCc-EEEEEEeCCHHHHHHHHHHhc-cc-chhHHHHHHHh-----------------hcCC
Confidence 457877754432 23 54 889999999998888766653 33 44577776532 1578
Q ss_pred EEEccCC
Q psy13720 298 MLCGGPP 304 (487)
Q Consensus 298 ~i~ggpP 304 (487)
+++...|
T Consensus 65 ~V~I~tp 71 (120)
T PF01408_consen 65 AVIIATP 71 (120)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 7776666
No 248
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=26.20 E-value=1.2e+02 Score=30.14 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=29.4
Q ss_pred CCcCCCCeEeecccCchHHHHHHhhc-CCCcEEEEEcCcHHHHHHHH
Q psy13720 212 PSIARPLRCLEVFAGAGGLSRGLDKS-GVARSTWAIEFDSAAATAFK 257 (487)
Q Consensus 212 ~~~~~~l~~ldLFsG~Gg~s~Gl~~a-G~~~~~~a~e~~~~a~~t~~ 257 (487)
-.+++..+||||=||-||++.=+... |+ .+.++.+++.-.+--+
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~g~--~v~gitlS~~Q~~~a~ 102 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERYGC--HVTGITLSEEQAEYAR 102 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHH
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCc--EEEEEECCHHHHHHHH
Confidence 35567889999999999999888777 86 5788999887665543
No 249
>KOG1541|consensus
Probab=24.80 E-value=2.7e+02 Score=27.10 Aligned_cols=40 Identities=15% Similarity=0.088 Sum_probs=32.6
Q ss_pred CCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHH
Q psy13720 217 PLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKM 258 (487)
Q Consensus 217 ~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~ 258 (487)
.--+||+=||.|-.+.=|..+|. ...++||++.-+++-..
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh--~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGH--QWIGVDISPSMLEQAVE 90 (270)
T ss_pred CcEEEEeccCCCcchheeccCCc--eEEeecCCHHHHHHHHH
Confidence 33489999999987778888994 78899999998876553
No 250
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=22.92 E-value=2e+02 Score=27.69 Aligned_cols=134 Identities=16% Similarity=0.080 Sum_probs=77.0
Q ss_pred CCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHHHhCCC-----CceeccchHHHHHHhhchhhhccccccC
Q psy13720 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPG-----CTVFVDDCNKILQRVIDNEVCDDKKQKL 290 (487)
Q Consensus 216 ~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~~N~p~-----~~~~~~di~~~~~~~~~~~~~~~~~~~~ 290 (487)
...+++|.=||+|=.+.+|-.-=| +.|-.+|-.+.-+++-+..... ...++..+.++ .
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f----------------~ 117 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDF----------------T 117 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG------------------
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhc----------------c
Confidence 678899999999999999965555 8999999999998888865543 12333222222 3
Q ss_pred CCCCcccEEEccCCCcCcccCCccCCcccccchhHHHHHHHHHhhhcCCcE--EEEecCcchhc----ccch---hHHHH
Q psy13720 291 PRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRF--FLLENVRNFVA----FKNS---MVLKM 361 (487)
Q Consensus 291 p~~~~vd~i~ggpPCq~fS~~~~~~~~~~~d~r~~L~~~~l~~v~~~~P~~--~ilENV~gl~~----~~~~---~~~~~ 361 (487)
|..+..|+|+ ||=-.+ + .....|+.=+.|.-+.++|.- +|=|||..--. ..++ .....
T Consensus 118 P~~~~YDlIW----~QW~lg--h-------LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D~~DsSvTRs~~~ 184 (218)
T PF05891_consen 118 PEEGKYDLIW----IQWCLG--H-------LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFDEEDSSVTRSDEH 184 (218)
T ss_dssp --TT-EEEEE----EES-GG--G-------S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEETTTTEEEEEHHH
T ss_pred CCCCcEeEEE----ehHhhc--c-------CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccCCccCeeecCHHH
Confidence 5556899998 443322 2 111245544556666778864 55699975211 0111 23467
Q ss_pred HHHHHHhCCCeeEEEEEe
Q psy13720 362 TMRCLTQIGYQCTFGTLQ 379 (487)
Q Consensus 362 i~~~l~~~GY~~~~~~l~ 379 (487)
+++.|++.|+++-...++
T Consensus 185 ~~~lF~~AGl~~v~~~~Q 202 (218)
T PF05891_consen 185 FRELFKQAGLRLVKEEKQ 202 (218)
T ss_dssp HHHHHHHCT-EEEEEEE-
T ss_pred HHHHHHHcCCEEEEeccc
Confidence 778888899987655443
No 251
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=22.56 E-value=1.4e+02 Score=28.43 Aligned_cols=41 Identities=17% Similarity=0.029 Sum_probs=33.5
Q ss_pred CCCCeEeecccCchHHHHHHhhcCCCcEEEEEcCcHHHHHHHH
Q psy13720 215 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFK 257 (487)
Q Consensus 215 ~~~l~~ldLFsG~Gg~s~Gl~~aG~~~~~~a~e~~~~a~~t~~ 257 (487)
+..-++|..-||-|=-..-|...|+ -|.++|+++.|++.+.
T Consensus 36 ~~~~rvLvPgCG~g~D~~~La~~G~--~VvGvDls~~Ai~~~~ 76 (218)
T PF05724_consen 36 KPGGRVLVPGCGKGYDMLWLAEQGH--DVVGVDLSPTAIEQAF 76 (218)
T ss_dssp STSEEEEETTTTTSCHHHHHHHTTE--EEEEEES-HHHHHHHH
T ss_pred CCCCeEEEeCCCChHHHHHHHHCCC--eEEEEecCHHHHHHHH
Confidence 3566899999999977777888897 5789999999999873
No 252
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=22.13 E-value=1.1e+02 Score=27.96 Aligned_cols=36 Identities=14% Similarity=0.294 Sum_probs=30.5
Q ss_pred hHHHHHHHHHHhCCCeeEEEEEeccC--CCCCCcccEEEEEEE
Q psy13720 357 MVLKMTMRCLTQIGYQCTFGTLQAGH--FGVSQTRRRAIVLAA 397 (487)
Q Consensus 357 ~~~~~i~~~l~~~GY~~~~~~l~a~~--yGvPQ~R~R~fiia~ 397 (487)
..++.+++.|++..|.....++.+.. || +|+||+|.
T Consensus 54 ~d~e~l~~~lks~d~v~ev~i~~sle~iyG-----KRvIiiGG 91 (218)
T COG1707 54 DDFEKLLERLKSFDYVIEVEIHRSLEEIYG-----KRVIIIGG 91 (218)
T ss_pred CCHHHHHHHhhccceEEEeeecchHHHHhC-----cEEEEECC
Confidence 35788999999999999999888765 77 79999984
No 253
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=20.41 E-value=1.4e+02 Score=24.22 Aligned_cols=45 Identities=4% Similarity=0.063 Sum_probs=30.7
Q ss_pred EEEEecCcchhcccchhHHHHHHHHHHhCCCeeEEEEEe-ccCCCCCCcccEEEEEEE
Q psy13720 341 FFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQ-AGHFGVSQTRRRAIVLAA 397 (487)
Q Consensus 341 ~~ilENV~gl~~~~~~~~~~~i~~~l~~~GY~~~~~~l~-a~~yGvPQ~R~R~fiia~ 397 (487)
-+++||.+|.++ .+-..|.+.||.+..-.+- ..+-|+ .|+-|+..
T Consensus 6 svlVeN~~GVL~--------Rit~lFsRRg~NI~SLtvg~Te~~~i----SRmtivv~ 51 (84)
T PRK13562 6 KLQVADQVSTLN--------RITSAFVRLQYNIDTLHVTHSEQPGI----SNMEIQVD 51 (84)
T ss_pred EEEEECCCCHHH--------HHHHHHhccCcCeeeEEecccCCCCc----eEEEEEEe
Confidence 368999999764 6778889999998765433 333443 37766653
No 254
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=20.18 E-value=1.5e+02 Score=23.73 Aligned_cols=30 Identities=13% Similarity=-0.206 Sum_probs=19.8
Q ss_pred CCCceEEEEEEEEecCCCCCCCCCceEEEEEeeecc
Q psy13720 68 PAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRP 103 (487)
Q Consensus 68 ~~P~~IgrI~~i~~~~~~~~~~~~~~~v~v~wfyRp 103 (487)
+-|+|=|+|+..-+.+. ..-.+.|+||.-.
T Consensus 15 Gyp~WPa~I~~~~~~~~------~~~~~~V~FfGt~ 44 (83)
T cd05834 15 GYPAWPARVDEPEDWKP------PGKKYPVYFFGTH 44 (83)
T ss_pred CCCCCCEEEecccccCC------CCCEEEEEEeCCC
Confidence 56778888877543211 3456899999843
Done!