RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13720
         (487 letters)



>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
           methyltransferase fold, maintenance methyla transferase;
           HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
           3pt6_A* 3pt9_A* 4da4_A*
          Length = 1002

 Score =  452 bits (1162), Expect = e-149
 Identities = 256/487 (52%), Positives = 324/487 (66%), Gaps = 1/487 (0%)

Query: 2   YYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMK 61
            Y   +  G  Y++   VY+ P+ F F  K  S V+  ++   DE+LYPE YRK SDY+K
Sbjct: 324 LYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIK 383

Query: 62  GSNAYTPAPFGIGYIVAIF-KKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNK 120
           GSN   P P+ IG I  IF  KK     + +D+ + V KFYRPENTH+S   +Y  D+N 
Sbjct: 384 GSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINL 443

Query: 121 LYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPT 180
           LYWSDEE  V    VQG+C V   ++L      +S  GP+RFYF EAYN+K++ F + P 
Sbjct: 444 LYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSFEDPPN 503

Query: 181 EALFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVA 240
            A   G+  KGKGKGK +      +    E       LR L+VF+G GGLS G  ++G++
Sbjct: 504 HARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPKLRTLDVFSGCGGLSEGFHQAGIS 563

Query: 241 RSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLC 300
            + WAIE    AA AF++NNPG TVF +DCN +L+ V+  E  + + Q+LP+KG+VEMLC
Sbjct: 564 DTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDVEMLC 623

Query: 301 GGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLK 360
           GGPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+FK SMVLK
Sbjct: 624 GGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLK 683

Query: 361 MTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQL 420
           +T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP  VF+PR  QL
Sbjct: 684 LTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQL 743

Query: 421 NVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREKV 480
           +V +  K +VS      S P+RTITVRD MSDLPE++NG    E+ Y     S FQR+  
Sbjct: 744 SVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLR 803

Query: 481 WKCYSKI 487
              Y  I
Sbjct: 804 GAQYQPI 810



 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 27/197 (13%), Positives = 51/197 (25%), Gaps = 59/197 (29%)

Query: 2   YYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMK 61
           YY  V  + E  ++  CV V PD                     + LY            
Sbjct: 148 YYKKVCIDAETLEVGDCVSVIPD------------------DSSKPLY------------ 177

Query: 62  GSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKL 121
                      +  + A+++                  F    +T      +   D  +L
Sbjct: 178 -----------LARVTALWEDSSNGQ------MFHAHWFCAGTDTVLG-ATS---DPLEL 216

Query: 122 YWSDEEEQVSLSDVQGKCFVVCEDNLQI--------STDRWSSRGPHRFYFNEAYNSKTE 173
           +  DE E + LS +  K  V+ +   +                     +++   Y+    
Sbjct: 217 FLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYA 276

Query: 174 EFTNLPTEALFLGSVSK 190
            F + P       +  K
Sbjct: 277 RFESPPKTQPTEDNKFK 293


>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
            finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
            musculus} PDB: 3av5_A* 3av6_A*
          Length = 1330

 Score =  449 bits (1154), Expect = e-145
 Identities = 265/484 (54%), Positives = 330/484 (68%)

Query: 2    YYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMK 61
            Y + ++  G  Y+L   VY+ P+ F F  K  S V+  K+   +E LYPE YRK SDY+K
Sbjct: 636  YCSSITKNGVVYRLGDSVYLPPEAFTFNIKVASPVKRPKKDPVNETLYPEHYRKYSDYIK 695

Query: 62   GSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKL 121
            GSN   P P+ IG I  I   K K  V+ +D+ L + KFYRPENTHRS   +Y  D+N L
Sbjct: 696  GSNLDAPEPYRIGRIKEIHCGKKKGKVNEADIKLRLYKFYRPENTHRSYNGSYHTDINML 755

Query: 122  YWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTE 181
            YWSDEE  V+ SDVQG+C V   ++L  S   +S  GP RFYF EAYNSKT+ F + P  
Sbjct: 756  YWSDEEAVVNFSDVQGRCTVEYGEDLLESIQDYSQGGPDRFYFLEAYNSKTKNFEDPPNH 815

Query: 182  ALFLGSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVAR 241
            A   G+  KGKGKGK +      + +  E       LR L+VF+G GGLS G  ++G++ 
Sbjct: 816  ARSPGNKGKGKGKGKGKGKHQVSEPKEPEAAIKLPKLRTLDVFSGCGGLSEGFHQAGISE 875

Query: 242  STWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCG 301
            + WAIE    AA AF++NNPG TVF +DCN +L+ V+  EV +   Q+LP+KG+VEMLCG
Sbjct: 876  TLWAIEMWDPAAQAFRLNNPGTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQKGDVEMLCG 935

Query: 302  GPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKM 361
            GPPCQGFSGMNRFN R YS FKNSL+VS+LSYCDYYRPRFFLLENVRNFV+++ SMVLK+
Sbjct: 936  GPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSYRRSMVLKL 995

Query: 362  TMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLN 421
            T+RCL ++GYQCTFG LQAG +GV+QTRRRAI+LAAAPGE LP +PEP  VF+PR  QL+
Sbjct: 996  TLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLS 1055

Query: 422  VTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCKMEELPYKENALSHFQREKVW 481
            V +  K +VS      S P+RTITVRD MSDLPEIQNG    E+PY    LS FQR+   
Sbjct: 1056 VVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEIQNGASNSEIPYNGEPLSWFQRQLRG 1115

Query: 482  KCYS 485
              Y 
Sbjct: 1116 SHYQ 1119



 Score = 44.6 bits (104), Expect = 7e-05
 Identities = 32/198 (16%), Positives = 54/198 (27%), Gaps = 60/198 (30%)

Query: 2   YYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMK 61
           YY  VS + E  ++  CV V PD                     + LY            
Sbjct: 459 YYQKVSIDEEMLEVGDCVSVIPD------------------DSSKPLY------------ 488

Query: 62  GSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKL 121
                      +  + A+++ K  +             F    +T          D  +L
Sbjct: 489 -----------LARVTALWEDKNGQM------MFHAHWFCAGTDTVLGA----TSDPLEL 527

Query: 122 YWSDEEEQVSLSDVQGKCFVV---------CEDNLQISTDRWSSRGPHRFYFNEAYNSKT 172
           +   E E + LS +  K  V+          E      T    +     ++F   YN + 
Sbjct: 528 FLVGECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLPGAEDGKTYFFQLWYNQEY 587

Query: 173 EEFTNLPTEALFLGSVSK 190
             F + P       +  K
Sbjct: 588 ARFESPPKTQPTEDNKHK 605


>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding,
           structural GENO protein structure initiative, PSI; 1.75A
           {Escherichia coli O157}
          Length = 376

 Score =  179 bits (455), Expect = 6e-52
 Identities = 52/270 (19%), Positives = 93/270 (34%), Gaps = 38/270 (14%)

Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
           L  +++F+G GGLS G  ++G      A+E D  A     +N P      +D + +   +
Sbjct: 3   LNVIDLFSGVGGLSLGAARAGF-DVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEI 61

Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
           I        K        ++ + GGPPCQGFS + +         +N L + +       
Sbjct: 62  I--------KGFFKNDMPIDGIIGGPPCQGFSSIGK---GNPDDSRNQLYMHFYRLVSEL 110

Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
           +P FFL ENV   +  K S +       ++          ++A  +G    R R   +  
Sbjct: 111 QPLFFLAENVPGIMQEKYSGIRNKAFNLVSGDYDILDPIKVKASDYGAPTIRTRYFFI-G 169

Query: 398 APGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQ 457
               +     +    F P+                           +TV+D +  LP+I 
Sbjct: 170 VKKSLKLDISDEV--FMPK-----------------------MIDPVTVKDALYGLPDII 204

Query: 458 NGCKMEELPYKENALSHFQREKVWKCYSKI 487
           +     +           +     K + +I
Sbjct: 205 DANWQSDSESWRTIKKDRKGGFYEKLWGQI 234


>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine
           methylase, transferase/DNA complex; HET: DNA C49 5CM;
           2.80A {Haemophilus influenzae biotypeaegyptius} SCOP:
           c.66.1.26
          Length = 324

 Score =  137 bits (348), Expect = 4e-37
 Identities = 57/271 (21%), Positives = 98/271 (36%), Gaps = 51/271 (18%)

Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
           +  + +F+GAGGL  G  K+G  R   A E+D +    ++ N+    +   D +KI    
Sbjct: 1   MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHSA-KLIKGDISKI---- 54

Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
                      + P   + + + GGPPCQ +S       R     +  L   Y+      
Sbjct: 55  --------SSDEFP---KCDGIIGGPPCQSWSEGGS--LRGIDDPRGKLFYEYIRILKQK 101

Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
           +P FFL ENV+  +A +++  ++  ++     GY      L A  +GV+Q R+R   +  
Sbjct: 102 KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGF 161

Query: 398 APGEVLP-KYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEI 456
                +    P P                                   T +DV+ DL + 
Sbjct: 162 RKELNINYLPPIP------------------------------HLIKPTFKDVIWDLKD- 190

Query: 457 QNGCKMEELPYKENALSHFQREKVWKCYSKI 487
                +++     N   +   E     YS I
Sbjct: 191 NPIPALDKNKTNGNKCIYPNHEYFIGSYSTI 221


>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
           homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
           c.66.1.26
          Length = 343

 Score =  130 bits (328), Expect = 4e-34
 Identities = 50/207 (24%), Positives = 87/207 (42%), Gaps = 30/207 (14%)

Query: 217 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 275
           PLR LE+++G GG+   L +S + A+   AI+ ++ A   +K N P   +       I  
Sbjct: 2   PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 61

Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 335
              D    D             M+   PPCQ F+ + R  Q   +  + +  +  L    
Sbjct: 62  EEFDRLSFD-------------MILMSPPCQPFTRIGR--QGDMTDSRTNSFLHILDILP 106

Query: 336 YYR--PRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAI 393
             +  P++ LLENV+ F   + S    + ++ +   G+Q     L     G+  +R R  
Sbjct: 107 RLQKLPKYILLENVKGF---EVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYF 163

Query: 394 VLA---------AAPGEVLPKYPEPWT 411
           ++A          APG+VL ++P+   
Sbjct: 164 LIAKLQSEPLPFQAPGQVLMEFPKIEI 190


>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A
           {Entamoeba histolytica}
          Length = 327

 Score =  124 bits (312), Expect = 4e-32
 Identities = 34/186 (18%), Positives = 66/186 (35%), Gaps = 22/186 (11%)

Query: 216 RPLRCLEVFAGAGGLSRGLDKSG--VARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKI 273
           + +  +E F+G GGL    ++S   +  +    + +  A   +  N     V V + + I
Sbjct: 9   KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-EVQVKNLDSI 67

Query: 274 LQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSL---IVSY 330
             + I++  C+                  PPCQ ++       +  +  +      +   
Sbjct: 68  SIKQIESLNCN-------------TWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRD 114

Query: 331 LSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRR 390
           +      +P+   +ENV  F   K S+V K     L +  Y            G+  +R 
Sbjct: 115 ILPYLINKPKHIFIENVPLF---KESLVFKEIYNILIKNQYYIKDIICSPIDIGIPNSRT 171

Query: 391 RAIVLA 396
           R  V+A
Sbjct: 172 RYYVMA 177


>3me5_A Cytosine-specific methyltransferase; structural genomics, protein
           structure initiative, NEW YORK structural genomix
           research consortium; 1.75A {Shigella flexneri 2A} PDB:
           3lx6_A
          Length = 482

 Score =  118 bits (297), Expect = 4e-29
 Identities = 63/330 (19%), Positives = 116/330 (35%), Gaps = 53/330 (16%)

Query: 142 VCEDNLQISTDRWSSRGPHRFYFNEAYNSK--TEEFTNLPTEALFLGSVSKGKGKGKNQT 199
           +      +  + WS+    R   N++   +   +EF +L T               K   
Sbjct: 35  LVAQLNGVGENHWSAAILKRALANDSAWHRLSEKEFAHLQTLL------------PKPPE 82

Query: 200 NKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259
           + P                R +++FAG GG+ RG +  G  +  +  E++  A   +K N
Sbjct: 83  HHPHYA------------FRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKAN 129

Query: 260 ---NPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRK-GEVEMLCGGPPCQGFS--GMNR 313
              +P    F +D   I     +    +   + + +   E ++L  G PCQ FS  G+++
Sbjct: 130 HYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIPEHDVLLAGFPCQPFSLAGVSK 189

Query: 314 FNQRQYSAF-----KNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQ 368
            N    +       + +L    +   D  RP  F+LENV+N  +       ++ M+ L +
Sbjct: 190 KNSLGRAHGFACDTQGTLFFDVVRIIDARRPAMFVLENVKNLKSHDKGKTFRIIMQTLDE 249

Query: 369 IGYQCTFGTLQA--------GHFGVSQTRRRAIV------LAAAPGEVLPKYPEPWTVFS 414
           +GY                 G   + Q R R ++      L       L    E +    
Sbjct: 250 LGYDVADAEDNGPDDPKIIDGKHFLPQHRERIVLVGFRRDLNLKADFTLRDISECFPAQR 309

Query: 415 PRTSQ-LNVTISKKTYVSTCKWTQSAPYRT 443
              +Q L+  +  K  ++   W     Y  
Sbjct: 310 VTLAQLLDPMVEAKYILTPVLWKYLYRYAK 339


>2c7p_A Modification methylase HHAI; DNA methyltransferase,
           methyltransferase, base flipping, restriction system,
           transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus
           haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A*
           1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A*
           3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A*
           9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...
          Length = 327

 Score =  110 bits (278), Expect = 3e-27
 Identities = 42/179 (23%), Positives = 77/179 (43%), Gaps = 20/179 (11%)

Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
           LR +++FAG GG    L+  G A   ++ E+D  A   ++MN         D  ++    
Sbjct: 12  LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFG--EKPEGDITQV---- 64

Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
                    ++ +P   + ++LC G PCQ FS      Q+ +   + +L           
Sbjct: 65  --------NEKTIP---DHDILCAGFPCQAFSISG--KQKGFEDSRGTLFFDIARIVREK 111

Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLA 396
           +P+   +ENV+NF +  N   L++    + ++ Y      L A  +G+ Q R R  ++ 
Sbjct: 112 KPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMIC 170


>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A
           (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A
           {Homo sapiens}
          Length = 295

 Score = 85.8 bits (212), Expect = 8e-19
 Identities = 40/257 (15%), Positives = 74/257 (28%), Gaps = 28/257 (10%)

Query: 216 RPLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKIL 274
           +P+R L +F G       L   G+      A E    + T   + + G  ++V D   + 
Sbjct: 15  KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQGKIMYVGDVRSV- 73

Query: 275 QRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSA-----FKNSLIVS 329
                       ++ +   G  +++ GG PC   S +N   +  Y       F+   ++ 
Sbjct: 74  -----------TQKHIQEWGPFDLVIGGSPCNDLSIVNPARKGLYEGTGRLFFEFYRLLH 122

Query: 330 YL-SYCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQT 388
                    RP F+L ENV            +   R L     +     + A     +  
Sbjct: 123 DARPKEGDDRPFFWLFENVVAM----GVSDKRDISRFL-----ESNPVMIDAKEVSAAHR 173

Query: 389 RRRAIVLAAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRD 448
            R            L                  +    K    T +       +      
Sbjct: 174 ARYFWGNLPGMNRPLASTVNDKLELQECLEHGRIAKFSKVRTITTRSNSIKQGKDQHFPV 233

Query: 449 VMSDLPEIQNGCKMEEL 465
            M++  +I    +ME +
Sbjct: 234 FMNEKEDILWCTEMERV 250


>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A
           (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A
           {Homo sapiens}
          Length = 230

 Score = 55.5 bits (133), Expect = 6e-09
 Identities = 27/176 (15%), Positives = 50/176 (28%), Gaps = 41/176 (23%)

Query: 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 275
           +P+R L +F     + + L   G          D           PG    V D    ++
Sbjct: 32  QPVRVLSLF---EDIKKELTSLGF----LESGSD-----------PGQLKHVVDVTDTVR 73

Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 335
           +             +   G  +++ G  P  G +              +  +  +     
Sbjct: 74  K------------DVEEWGPFDLVYGATPPLGHTCDRP---------PSWYLFQFHRLLQ 112

Query: 336 YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRR 391
           Y RP+         F  F +++VL      +     +    T+   H G  Q   R
Sbjct: 113 YARPKP--GSPRPFFWMFVDNLVLNKEDLDVASRFLEMEPVTIPDVHGGSLQNAVR 166


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 55.2 bits (132), Expect = 4e-08
 Identities = 62/443 (13%), Positives = 132/443 (29%), Gaps = 114/443 (25%)

Query: 76  IVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLD-----LNKLYWSDEEEQV 130
           I+++F+     N    DV    +   +   +   ++             +L+W+   +Q 
Sbjct: 21  ILSVFEDAFVDNFDCKDV----QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76

Query: 131 SLSDVQGKCFVVCEDNLQIS----TDRWS--SRGPHRFYFNEAYNSKTEEFTNLPTEALF 184
            +       FV  E+ L+I+            R P        Y  + +   N     +F
Sbjct: 77  EMVQK----FV--EEVLRINYKFLMSPIKTEQRQPSMMT--RMYIEQRDRLYNDNQ--VF 126

Query: 185 LGSVSKGKGKGKNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTW 244
                      K   ++ +   ++ +     RP + + +  G  G       SG  ++  
Sbjct: 127 ----------AKYNVSRLQPYLKLRQALLELRPAKNVLID-GVLG-------SG--KTWV 166

Query: 245 AIEFDSAAATAFKMNNPGCTVF---VDDCN------KILQRV---IDNEVCD--DKKQKL 290
           A++     +   +       +F   + +CN      ++LQ++   ID       D    +
Sbjct: 167 ALD--VCLSYKVQCKMDF-KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 291 PR-----KGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYYRPRFFLLE 345
                  + E+  L                 + Y   +N L+V               L 
Sbjct: 224 KLRIHSIQAELRRL--------------LKSKPY---ENCLLV---------------LL 251

Query: 346 NVRN---FVAFK-NSMVLKMTMR--CLTQIGYQCTFGTLQAGHFGVSQTRRRAI-VLAAA 398
           NV+N   + AF  +  +L +T R   +T      T   +   H  ++ T      +L   
Sbjct: 252 NVQNAKAWNAFNLSCKIL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY 310

Query: 399 PGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQN 458
                   P      +PR   +   I++        W          +  ++     +  
Sbjct: 311 LDCRPQDLPREVLTTNPRRLSI---IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 459 GCKMEELPYKENALSHFQREKVW 481
             +  ++ +    LS F      
Sbjct: 368 PAEYRKM-FDR--LSVF-PPSAH 386



 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 41/274 (14%), Positives = 68/274 (24%), Gaps = 86/274 (31%)

Query: 266 FVDD--CNKI---LQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRF------ 314
           FVD+  C  +    + ++  E  D              L      +    + +F      
Sbjct: 29  FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 315 -------------------NQRQYSAFKNSLIVSYLSYCDYYRPRFFLLENVRNFVAFKN 355
                                R Y   ++ L      +  Y   R      +R   A   
Sbjct: 89  INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ--ALLE 146

Query: 356 SMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAAA---PGEVLPKYPEP--W 410
                     L         G    G  G +        +A       +V  K      W
Sbjct: 147 ----------LRPAKNVLIDG--VLG-SGKT-------WVALDVCLSYKVQCKMDFKIFW 186

Query: 411 ----TVFSPRT-----SQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQNGCK 461
                  SP T      +L   I    + S    + +   R  +++  +  L        
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPN-WTSRSDHSSNIKLRIHSIQAELRRL-------- 237

Query: 462 MEELPYKENAL---SHFQREKVWK-----CYSKI 487
           ++  PY+ N L    + Q  K W      C  KI
Sbjct: 238 LKSKPYE-NCLLVLLNVQNAKAWNAFNLSC--KI 268



 Score = 29.1 bits (64), Expect = 4.9
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 8/56 (14%)

Query: 4   NCVSYEGEQYKLKSCVY-VNPDCF--KFKSKPQSAVQNNKRPVEDEELYPEAYRKL 56
           N   YE     +   +  +  +    K+    + A+       EDE ++ EA++++
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA-----EDEAIFEEAHKQV 587


>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology
           domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC,
           nuclear protein; 1.55A {Gallus gallus}
          Length = 174

 Score = 51.8 bits (124), Expect = 5e-08
 Identities = 28/179 (15%), Positives = 52/179 (29%), Gaps = 50/179 (27%)

Query: 2   YYNCVSYEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMK 61
           Y    S++   Y +   VYV P                     + + +            
Sbjct: 16  YSQDCSFKNSMYHVGDYVYVEP------------------AEANLQPH------------ 45

Query: 62  GSNAYTPAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKL 121
                      I  I  +++    +       +L    FYRP  T      T +    ++
Sbjct: 46  -----------IVCIERLWEDSAGE------KWLYGCWFYRPNETFHLA--TRKFLEKEV 86

Query: 122 YWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPT 180
           + SD   +V +S + GKC V+                   +     Y++KT+ F  +  
Sbjct: 87  FKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDV-YVCESRYSAKTKSFKKIKL 144


>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics,
           PSI-2, protein structure initiative; 2.30A {Haemophilus
           influenzae} SCOP: c.66.1.46
          Length = 201

 Score = 40.6 bits (96), Expect = 4e-04
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 18/78 (23%)

Query: 219 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAA-------TAFKMNNPGCTVF 266
            CL+ FAG+G L     SR       A+    +E D   A          K ++    V 
Sbjct: 56  ECLDGFAGSGSLGFEALSRQ------AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVI 109

Query: 267 VDDCNKILQRVIDNEVCD 284
                  L++  +    D
Sbjct: 110 NQSSLDFLKQPQNQPHFD 127


>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding,
           RNA methylase, RSMD, SAM-fold, RNA methyltransferase;
           1.90A {Mycobacterium tuberculosis}
          Length = 189

 Score = 39.4 bits (93), Expect = 8e-04
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 16/68 (23%)

Query: 219 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVD 268
             L+++AG+G L     SRG      A S   +E D  +A     N       G T+   
Sbjct: 47  AVLDLYAGSGALGLEALSRG------AASVLFVESDQRSAAVIARNIEALGLSGATLRRG 100

Query: 269 DCNKILQR 276
               ++  
Sbjct: 101 AVAAVVAA 108


>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated
           H3K4, de novo DNA methylation, transferase regulator;
           HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
          Length = 386

 Score = 40.3 bits (93), Expect = 0.001
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 13/127 (10%)

Query: 266 FVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNS 325
           F++  +   Q     +V D  ++ +   G  +++ G  P  G +         +  F+  
Sbjct: 208 FLESGSDPGQLKHVVDVTDTVRKDVEEWGPFDLVYGATPPLGHTCDRP---PSWYLFQFH 264

Query: 326 LIVSYLS-YCDYYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFG 384
            ++ Y         P F++  +        N   L +  R L     +    T+   H G
Sbjct: 265 RLLQYARPKPGSPGPFFWMFVDNLVL----NKEDLDVASRFL-----EMEPVTIPDVHGG 315

Query: 385 VSQTRRR 391
             Q   R
Sbjct: 316 SLQNAVR 322


>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
           PSI, protei structure initiative; HET: MSE; 2.05A
           {Escherichia coli} SCOP: c.66.1.46
          Length = 202

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 16/68 (23%)

Query: 219 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAATAFKMN-----NPGCTVFVD 268
           +CL+ FAG+G L     SR       A     IE D A +     N          V   
Sbjct: 57  QCLDCFAGSGALGLEALSRY------AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNS 110

Query: 269 DCNKILQR 276
           +    L +
Sbjct: 111 NAMSFLAQ 118


>2esr_A Methyltransferase; structural genomics, hypothetical protein,
           streptococcus PYO PSI, protein structure initiative;
           HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
          Length = 177

 Score = 36.0 bits (84), Expect = 0.011
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 17/69 (24%)

Query: 219 RCLEVFAGAGG-----LSRGLDKSGVARSTWAIEFDSAAATAFKMN------NPGCTVFV 267
           R L++FAG+GG     +SRG        +   +E +  A    + N          T+  
Sbjct: 34  RVLDLFAGSGGLAIEAVSRG------MSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLK 87

Query: 268 DDCNKILQR 276
            +  + +  
Sbjct: 88  MEAERAIDC 96


>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural
           genomics, PSI, protein structure initiative; HET: MSE;
           1.60A {Enterococcus faecalis} SCOP: c.66.1.46
          Length = 187

 Score = 32.9 bits (76), Expect = 0.13
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 17/69 (24%)

Query: 219 RCLEVFAGAGG-----LSRGLDKSGVARSTWAIEFDSAAATAFKMN------NPGCTVFV 267
             L++++G+GG     +SRG         +  IE + AA    K N           V  
Sbjct: 47  MALDLYSGSGGLAIEAVSRG------MDKSICIEKNFAALKVIKENIAITKEPEKFEVRK 100

Query: 268 DDCNKILQR 276
            D N+ L++
Sbjct: 101 MDANRALEQ 109


>2qy0_B Complement C1R subcomponent; serine protease, beta barrel,
           complement pathway like domain, glycoprotein, hydrolase,
           hydroxylation, immune response; 2.60A {Homo sapiens}
           SCOP: b.47.1.2
          Length = 242

 Score = 32.6 bits (75), Expect = 0.18
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 12/51 (23%)

Query: 272 KILQ----RVIDNEVCDDKKQKLPRKGEV--EMLCGGPP------CQGFSG 310
             L+     V + + C++  +   R       M C G P      CQG SG
Sbjct: 142 HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSG 192


>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex,
           hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2
           PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H
           1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H*
           1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H*
           ...
          Length = 254

 Score = 32.2 bits (74), Expect = 0.26
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 12/50 (24%)

Query: 273 ILQRV----IDNEVCDDKKQKLPRKGEV--EMLCGGPP------CQGFSG 310
            L  +    +  + C  + +K+     +   M C G        C+G SG
Sbjct: 144 ELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSG 193


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 33.1 bits (75), Expect = 0.29
 Identities = 38/200 (19%), Positives = 57/200 (28%), Gaps = 81/200 (40%)

Query: 233  GLD---KSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQK 289
            G+D    S  A+  W    +   A     +  G   F      IL  VI+N         
Sbjct: 1632 GMDLYKTSKAAQDVW----N--RADNHFKDTYG---F-----SILDIVINN--------- 1668

Query: 290  LPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY---RPRFFLLEN 346
             P    + +  GG   +      R N   YSA        + +  D        F  +  
Sbjct: 1669 -PV--NLTIHFGGEKGKRI----REN---YSAMI------FETIVDGKLKTEKIFKEINE 1712

Query: 347  VRNFVAFKNSM-VLKMTMRCLTQ-----IGYQCTFGTLQ-----------AGHFGVSQTR 389
                  F++   +L  T    TQ     +     F  L+           AGH   S   
Sbjct: 1713 HSTSYTFRSEKGLLSATQ--FTQPALTLMEK-AAFEDLKSKGLIPADATFAGH---S--- 1763

Query: 390  RRAIVL----A-AAPGEVLP 404
                 L    A A+  +V+ 
Sbjct: 1764 -----LGEYAALASLADVMS 1778


>1md8_A C1R complement serine protease; innate immunity, activation,
           substrate specificity, hydrolase; 2.80A {Homo sapiens}
           SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*
          Length = 329

 Score = 32.4 bits (74), Expect = 0.32
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 12/51 (23%)

Query: 272 KILQ----RVIDNEVCDDKKQKLPRKGEV--EMLCGGPP------CQGFSG 310
             L+     V + + C++  +   R       M C G P      CQG SG
Sbjct: 231 HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSG 281


>4dov_A ORC1, origin recognition complex subunit 1; DNA replication,
           replication; 1.70A {Mus musculus} PDB: 4dow_A*
          Length = 163

 Score = 31.6 bits (71), Expect = 0.32
 Identities = 22/170 (12%), Positives = 54/170 (31%), Gaps = 25/170 (14%)

Query: 30  SKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYT-------------PAPFGIGYI 76
           SK +       RP+ + + + + YR++   +   +                     +  +
Sbjct: 1   SKTRQTFSWVGRPLPNRKQFQQMYREICMKINDGSEIHIKVGQFVLIQGEDNKKPYVAKL 60

Query: 77  VAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFT--YQLDLNKLYWSD---EEEQVS 131
           + +F+   +           V+ F R      S            +++W D    + +++
Sbjct: 61  IELFQNGAEVP---PKKCARVQWFVRFLEIPVSKRHLLGRSPPAQEIFWYDCSDWDNKIN 117

Query: 132 LSDVQGKCFVVCEDNLQISTDRWSSRGPHRFYFNEAYNSKTEEFTNLPTE 181
           +  + G   VV     ++       +     +   ++N K   F  LP E
Sbjct: 118 VETIIGPVQVVALAPEEVIPV--DQKSEETLFVKLSWNKKD--FAPLPPE 163


>1gpz_A Complement C1R component; hydrolase, activation, innate immunity,
           modular structure, serine protease; HET: NAG FUC MAN;
           2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1
          Length = 399

 Score = 31.7 bits (72), Expect = 0.51
 Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 12/51 (23%)

Query: 272 KILQ----RVIDNEVCDDKKQKLPRKGEV--EMLCGGPP------CQGFSG 310
             L+     V + + C++  +   R       M C G P      CQG SG
Sbjct: 299 HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSG 349


>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription
           factor, transcription initiation; 2.60A {Saccharomyces
           cerevisiae} SCOP: c.66.1.24
          Length = 353

 Score = 31.4 bits (71), Expect = 0.56
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 178 LPTEALFLGSVSKGKGK-GKNQTNKPEEKDEITEWPSIARPLRC------LEVFAGAGGL 230
           +P     +  +SK K   G      P   ++I +   + +  +       L+++ G G  
Sbjct: 17  IPG----IKDISKLKFFYGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQ 72

Query: 231 SRGLDKSGVARSTWAIEFD 249
           S         R    +E  
Sbjct: 73  SAIFYNKYCPRQYSLLEKR 91


>1ws6_A Methyltransferase; structural genomics, riken structural
           genomics/proteomics initiative, RSGI; 2.50A {Thermus
           thermophilus} SCOP: c.66.1.46
          Length = 171

 Score = 30.5 bits (70), Expect = 0.65
 Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 12/46 (26%)

Query: 219 RCLEVFAGAGGL-----SRGLDKSGVARSTWAIEFDSAAATAFKMN 259
           R L+ FAG+G +     S G        +   +E D  A    K N
Sbjct: 44  RFLDPFAGSGAVGLEAASEG------WEAV-LVEKDPEAVRLLKEN 82


>1m4z_A Origin recognition complex subunit 1; DNA replication,
           transcriptional silencing, chromatin, BAH D gene
           regulation; 2.20A {Saccharomyces cerevisiae} SCOP:
           b.34.12.1 PDB: 1zhi_A 1zbx_A
          Length = 238

 Score = 29.8 bits (66), Expect = 1.8
 Identities = 10/76 (13%), Positives = 26/76 (34%), Gaps = 2/76 (2%)

Query: 103 PENTHRSVEFTYQLDLNKLYWSDEEEQVSLSDVQGKCFVVCEDNLQISTDRWSSRGPHRF 162
               + +  F+   + N+LY + E  ++ L +      V+     ++     +      F
Sbjct: 117 RPLNYYNKLFSETANKNELYLTAELAELQLFNFIRVANVMDGSKWEVLKG--NVDPERDF 174

Query: 163 YFNEAYNSKTEEFTNL 178
                     E+F ++
Sbjct: 175 TVRYICEPTGEKFVDI 190


>2v7k_A PRNB; IDO, TDO, biosynthetic protein; HET: HEM DTR; 1.70A
           {Pseudomonas fluorescens} PDB: 2v7j_A* 2v7i_A* 2v7l_A*
           2v7m_A* 2x66_A* 2x67_A* 2x68_A*
          Length = 361

 Score = 28.9 bits (64), Expect = 3.9
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query: 165 NEAYNSKTEEFTNLPTEALFLGSVSKG 191
           N         +T LP EA  L SV   
Sbjct: 121 NPTAADAQRSYTGLPDEAHLLESVRIS 147


>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
           NP_348457.1, putative cystathionine beta-lyase involved
           in A resistance; HET: LLP MSE; 2.00A {Clostridium
           acetobutylicum}
          Length = 427

 Score = 28.6 bits (64), Expect = 5.4
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 241 RSTWAIEFDSAAATAFKMNNPGCTVFVDDC 270
           R +  I   +    + +  N    VFVD+C
Sbjct: 191 RKSLRIAEIAEIIKSIREVNENVIVFVDNC 220


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.2 bits (59), Expect = 8.2
 Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 11/36 (30%)

Query: 81  KKKGKKNVSASDVFLTVKKFYRPENT-----HRSVE 111
           +K+  K + AS   L   K Y  ++        ++E
Sbjct: 18  EKQALKKLQAS---L---KLYADDSAPALAIKATME 47


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0532    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,378,056
Number of extensions: 428807
Number of successful extensions: 931
Number of sequences better than 10.0: 1
Number of HSP's gapped: 899
Number of HSP's successfully gapped: 41
Length of query: 487
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 390
Effective length of database: 3,993,456
Effective search space: 1557447840
Effective search space used: 1557447840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.0 bits)