RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13720
(487 letters)
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 343
Score = 82.4 bits (202), Expect = 7e-18
Identities = 52/268 (19%), Positives = 96/268 (35%), Gaps = 28/268 (10%)
Query: 217 PLRCLEVFAGAGGLSRGLDKSGV-ARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 275
PLR LE+++G GG+ L +S + A+ AI+ ++ A +K N P + I
Sbjct: 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITL 61
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 335
D + +M+ PPCQ F+ + R S + L + +
Sbjct: 62 EEFD-------------RLSFDMILMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRL 108
Query: 336 YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 395
P++ LLENV+ F +L T+ G+Q L G+ +R R ++
Sbjct: 109 QKLPKYILLENVKGFEVSSTRDLLIQTIEN---CGFQYQEFLLSPTSLGIPNSRLRYFLI 165
Query: 396 AAAPGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPE 455
A E LP + +++ K Q + ++D + D +
Sbjct: 166 AKLQSEPLPFQAPGQVLMEFPKIEIH-----------RKNQQDSDLSVKMLKDFLEDDTD 214
Query: 456 IQNGCKMEELPYKENALSHFQREKVWKC 483
+ + + L + +
Sbjct: 215 VNQYLLPPKSLLRYALLLDIVQPTCRRS 242
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
haemolyticus [TaxId: 726]}
Length = 327
Score = 78.1 bits (191), Expect = 2e-16
Identities = 40/200 (20%), Positives = 75/200 (37%), Gaps = 20/200 (10%)
Query: 216 RPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQ 275
LR +++FAG GG L+ G ++ E+D A ++MN
Sbjct: 10 TGLRFIDLFAGLGGFRLALESCGA-ECVYSNEWDKYAQEVYEMNFG-------------- 54
Query: 276 RVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCD 335
+ D + + ++LC G PCQ FS + + + + +L
Sbjct: 55 ---EKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQ--KGFEDSRGTLFFDIARIVR 109
Query: 336 YYRPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVL 395
+P+ +ENV+NF + N L++ + ++ Y L A +G+ Q R R ++
Sbjct: 110 EKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMI 169
Query: 396 AAAPGEVLPKYPEPWTVFSP 415
+ + P
Sbjct: 170 CFRNDLNIQNFQFPKPFELN 189
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius
[TaxId: 197575]}
Length = 324
Score = 74.3 bits (181), Expect = 3e-15
Identities = 48/270 (17%), Positives = 94/270 (34%), Gaps = 19/270 (7%)
Query: 218 LRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKILQRV 277
+ + +F+GAGGL G K+G R A E+D + ++ N+ + D +KI
Sbjct: 1 MNLISLFSGAGGLDLGFQKAGF-RIICANEYDKSIWKTYESNHS-AKLIKGDISKISSDE 58
Query: 278 IDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKNSLIVSYLSYCDYY 337
+ + + GGPPCQ +S + L Y+
Sbjct: 59 FP---------------KCDGIIGGPPCQSWSEGGSLRGIDD--PRGKLFYEYIRILKQK 101
Query: 338 RPRFFLLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAGHFGVSQTRRRAIVLAA 397
+P FFL ENV+ +A +++ ++ ++ GY L A +GV+Q R+R +
Sbjct: 102 KPIFFLAENVKGMMAQRHNKAVQEFIQEFDNAGYDVHIILLNANDYGVAQDRKRVFYIGF 161
Query: 398 APGEVLPKYPEPWTVFSPRTSQLNVTISKKTYVSTCKWTQSAPYRTITVRDVMSDLPEIQ 457
+ P + P + + + K + +
Sbjct: 162 RKELNINYLPPIPHLIKPTFKDVIWDLKDNPIPALDKNKTNGNKCIYPNHEYFIGSYSTI 221
Query: 458 NGCKMEELPYKENALSHFQREKVWKCYSKI 487
+ + E A + + + + +
Sbjct: 222 FMSRNRVRQWNEPAFTVQASGRQCQLHPQA 251
>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA
methyltransferase Trm1 {Pyrococcus horikoshii [TaxId:
53953]}
Length = 375
Score = 31.9 bits (72), Expect = 0.16
Identities = 9/47 (19%), Positives = 13/47 (27%)
Query: 213 SIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMN 259
+I P L+ + G A W + A K N
Sbjct: 42 NILNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRN 88
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 309
Score = 30.9 bits (69), Expect = 0.31
Identities = 17/95 (17%), Positives = 30/95 (31%), Gaps = 7/95 (7%)
Query: 215 ARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCTVFVDDCNKIL 274
RPL+ L +F G S +G ++ A K N +
Sbjct: 131 DRPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPI---- 184
Query: 275 QRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFS 309
R I + +++ R +++ PP G
Sbjct: 185 -RWICEDAMKFIQREERRGSTYDIILTDPPKFGRG 218
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase
3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}
Length = 311
Score = 29.1 bits (64), Expect = 1.2
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 205 KDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNN 260
+D I + P I + L+V G G LS K+G A+ ++ A +
Sbjct: 24 RDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIR 78
>d1r8ea2 d.60.1.1 (A:121-277) Multidrug-binding domain of
transcription activator BmrR {Bacillus subtilis [TaxId:
1423]}
Length = 157
Score = 28.5 bits (63), Expect = 1.2
Identities = 6/30 (20%), Positives = 16/30 (53%)
Query: 46 EELYPEAYRKLSDYMKGSNAYTPAPFGIGY 75
E + +Y KL +++ ++ +T +G +
Sbjct: 25 ENVLNASYSKLKKFIESADGFTNNSYGATF 54
>d1zeea1 a.266.1.2 (A:6-392) Hypothetical protein SO4414 {Shewanella
oneidensis [TaxId: 70863]}
Length = 387
Score = 29.1 bits (65), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 165 NEAYNSKTEEFTNLPTEALFLGSVSKG 191
N A+N + FT+LP E LF+ +KG
Sbjct: 128 NRAHNGIYKRFTDLPDEKLFVDYNTKG 154
>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 322
Score = 28.9 bits (64), Expect = 1.5
Identities = 15/102 (14%), Positives = 32/102 (31%), Gaps = 5/102 (4%)
Query: 196 KNQTNKPEEKDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATA 255
NK +K ++T+ L+ L+++ G G S R +E S+
Sbjct: 23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKF 82
Query: 256 FK--MNNPGCTVFVDDCNKILQRVIDNEVCDDKKQKLPRKGE 295
+ D + + D+++ +P
Sbjct: 83 LNAKFEGSPLQILKRD---PYDWSTYSNLIDEERIFVPEVQS 121
>d2ve8a1 a.4.5.67 (A:745-811) DNA translocase FtsK {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 67
Score = 26.1 bits (58), Expect = 1.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 44 EDEELYPEAYRKLSDYMKGSNAYTPAPFGIGYIVA 78
ED+ LY EA R +++ + S + IGY A
Sbjct: 1 EDDPLYDEAVRFVTESRRASISAVQRKLKIGYNRA 35
>d1tlha_ a.150.1.1 (A:) Anti-sigma factor AsiA {Bacteriophage T4
[TaxId: 10665]}
Length = 89
Score = 26.7 bits (59), Expect = 2.2
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 343 LLENVRNFVAFKNSMVLKMTMRCLTQIGYQCTFGTLQAG 381
++EN NF+AF N + + R L Q ++ L
Sbjct: 25 IVENRANFIAFLNEIGVTHEGRKLNQNSFRKIVSELTQE 63
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 316
Score = 28.2 bits (62), Expect = 2.5
Identities = 21/149 (14%), Positives = 43/149 (28%), Gaps = 6/149 (4%)
Query: 205 KDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDSAAATAFKMNNPGCT 264
++ + + + L+V +G G L K+G AR I + ++ + + +
Sbjct: 22 RNSMFHNRHLFKDKVVLDVGSGTGILCMFAAKAG-ARKVIGI--ECSSISDYAVKIVKAN 78
Query: 265 VFVDDCNKILQRVIDNEVCDDKKQKLPRKGEVEMLCGGPPCQGFSGMNRFNQRQYSAFKN 324
I +V + E+ +K + + L
Sbjct: 79 KLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIFP 138
Query: 325 SLIVSYL---SYCDYYRPRFFLLENVRNF 350
Y+ Y + ENV F
Sbjct: 139 DRATLYVTAIEDRQYKDYKIHWWENVYGF 167
>d1b12a_ b.87.1.2 (A:) Type 1 signal peptidase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 28.0 bits (61), Expect = 2.7
Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 1/146 (0%)
Query: 8 YEGEQYKLKSCVYVNPDCFKFKSKPQSAVQNNKRPVEDEELYPEAYRKLSDYMKGSNAYT 67
+ + +K V + D + + + S+ T
Sbjct: 61 EDPKLDYIKRAVGLPGDKVTYDPV-SKELTIQPGCSSGQACENALPVTYSNVEPSDFVQT 119
Query: 68 PAPFGIGYIVAIFKKKGKKNVSASDVFLTVKKFYRPENTHRSVEFTYQLDLNKLYWSDEE 127
+ G + F + K + + L+ +K + THR + D +Y+
Sbjct: 120 FSRRNGGEATSGFFEVPKNETKENGIRLSERKETLGDVTHRILTVPIAQDQVGMYYQQPG 179
Query: 128 EQVSLSDVQGKCFVVCEDNLQISTDR 153
+Q++ V + + DN S D
Sbjct: 180 QQLATWIVPPGQYFMMGDNRDNSADS 205
>d2gkea2 d.21.1.1 (A:131-274) Diaminopimelate epimerase {Haemophilus
influenzae [TaxId: 727]}
Length = 144
Score = 27.0 bits (59), Expect = 2.9
Identities = 9/43 (20%), Positives = 15/43 (34%)
Query: 246 IEFDSAAATAFKMNNPGCTVFVDDCNKILQRVIDNEVCDDKKQ 288
+ + A M NP C V VDD + + ++
Sbjct: 13 TDIQTVLCGAVSMGNPHCVVQVDDIQTANVEQLGPLLESHERF 55
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 328
Score = 27.1 bits (59), Expect = 4.7
Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 205 KDEITEWPSIARPLRCLEVFAGAGGLSRGLDKSGVARSTWAIEFDS---AAATAFKMNNP 261
++ I + + + L+V G G LS K G A+ ++ S A ++N
Sbjct: 27 RNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGF 85
Query: 262 GCTVFVDDCN 271
+ +
Sbjct: 86 SDKITLLRGK 95
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.411
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,844,754
Number of extensions: 86980
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 17
Length of query: 487
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 398
Effective length of database: 1,185,626
Effective search space: 471879148
Effective search space used: 471879148
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)