Query psy1373
Match_columns 231
No_of_seqs 115 out of 357
Neff 7.2
Searched_HMMs 29240
Date Fri Aug 16 19:03:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zr8_X AVR3A11; protein bindin 51.4 2.4 8.4E-05 28.1 -0.5 22 202-223 36-57 (65)
2 2w7n_A TRFB transcriptional re 34.6 71 0.0024 22.8 5.1 44 141-203 44-88 (101)
3 4dhx_B Enhancer of yellow 2 tr 29.9 9.2 0.00032 27.7 -0.4 20 193-212 79-98 (101)
4 3mhs_B Protein SUS1; multi-pro 27.6 16 0.00056 26.1 0.6 19 193-211 73-91 (96)
5 2ns5_A Partitioning-defective 20.3 1.6E+02 0.0056 20.4 4.6 60 134-204 12-73 (85)
6 3c0t_B Mediator of RNA polymer 18.2 30 0.001 19.1 0.3 22 194-215 2-23 (33)
7 2eqx_A Kelch repeat and BTB do 17.1 1E+02 0.0036 21.4 3.1 28 38-71 56-83 (105)
8 1yz7_A Probable translation in 15.0 4.4E+02 0.015 20.8 7.3 63 135-207 94-158 (188)
9 2qn6_B Translation initiation 15.0 3.1E+02 0.011 19.0 6.9 62 135-206 9-74 (93)
10 3lb6_A Interleukin-13, IL-13; 11.5 83 0.0028 23.6 1.2 26 135-160 8-42 (132)
No 1
>3zr8_X AVR3A11; protein binding, plant pathogen interactions; HET: PGE; 0.90A {Phytophthora capsici}
Probab=51.43 E-value=2.4 Score=28.12 Aligned_cols=22 Identities=14% Similarity=0.463 Sum_probs=20.0
Q ss_pred HhhHHhccCCCCCcccccCcCC
Q psy1373 202 LNRPRGIVTQRTVSPFQPIFSG 223 (231)
Q Consensus 202 l~Di~eFL~~~t~~wY~~~~~~ 223 (231)
+++|.+||.+++.--|..|.||
T Consensus 36 l~qI~~~Lk~k~k~KY~~IYNg 57 (65)
T 3zr8_X 36 LTQLSDFLKSKTRGKYDRVYNG 57 (65)
T ss_dssp HHHHGGGCCCSSTTTTHHHHHH
T ss_pred HHHHHHHHhHHhhhhHHHHHHH
Confidence 6899999999999999988877
No 2
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=34.64 E-value=71 Score=22.85 Aligned_cols=44 Identities=11% Similarity=-0.018 Sum_probs=33.1
Q ss_pred ccc-hHHHHHHHHHHHHHHHHhCCCeEEEEecCCCCceeCCCCCCCCCCCeeeeCchhHHHHHh
Q psy1373 141 NGG-VIVLRSKRQEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILN 203 (231)
Q Consensus 141 lg~-~~~l~~lL~ear~~~~~~~~~~t~Iy~~~~~~W~~~~~~r~~Rpl~TViLd~~~Ke~ll~ 203 (231)
+|- +.-+..+|..|++.|... .-...|.++ +|+|++.+...+.+
T Consensus 44 lGiSR~~VsrlL~~Ar~~~~~~---------~~P~g~~rv----------~v~lP~~~a~~v~~ 88 (101)
T 2w7n_A 44 LGLTRGAVSQAVHRVWAAFEDK---------NLPEGYARV----------TAVLPEHQAYIVRK 88 (101)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHT---------CCCTTEEEE----------EEEECHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHhcc---------CCCCCeeEE----------eeecCHHHHHHHHH
Confidence 566 778999999999998641 223459997 89999988765543
No 3
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=29.87 E-value=9.2 Score=27.69 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.8
Q ss_pred eCchhHHHHHhhHHhccCCC
Q psy1373 193 LDSGVADRILNRPRGIVTQR 212 (231)
Q Consensus 193 Ld~~~Ke~ll~Di~eFL~~~ 212 (231)
.|+.+|++|+.-|++||+.+
T Consensus 79 VP~~VK~Ell~rIr~fL~~~ 98 (101)
T 4dhx_B 79 VPDSVKKELLQRIRTFLAQH 98 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999654
No 4
>3mhs_B Protein SUS1; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3fwc_C 3fwb_C 3kjl_A 3m99_C 3mhh_B 3kik_A 4fip_B 4fjc_B 4fk5_B
Probab=27.57 E-value=16 Score=26.06 Aligned_cols=19 Identities=11% Similarity=0.356 Sum_probs=16.9
Q ss_pred eCchhHHHHHhhHHhccCC
Q psy1373 193 LDSGVADRILNRPRGIVTQ 211 (231)
Q Consensus 193 Ld~~~Ke~ll~Di~eFL~~ 211 (231)
.|+.+|++|+..|++||+.
T Consensus 73 VP~~VK~Ell~~Ir~fL~~ 91 (96)
T 3mhs_B 73 VSDSTRETVLKQIREFLEE 91 (96)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999863
No 5
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=20.26 E-value=1.6e+02 Score=20.35 Aligned_cols=60 Identities=18% Similarity=0.098 Sum_probs=37.5
Q ss_pred eEEEEEEccc-hHHHHHHHHHHHHHHHHhCCCeEEEEecCCCCceeCCCCCCCCCCCeeeeCc-hhHHHHHhh
Q psy1373 134 ETVTNCNNGG-VIVLRSKRQEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDS-GVADRILNR 204 (231)
Q Consensus 134 E~ltls~lg~-~~~l~~lL~ear~~~~~~~~~~t~Iy~~~~~~W~~~~~~r~~Rpl~TViLd~-~~Ke~ll~D 204 (231)
|.|.+=| |- ..-++.|.++|-..|.+..... ...|-.+ .. -|--+.-|||+ ++-.++++|
T Consensus 12 ~~vvVPC-~dg~~tV~~L~~~A~~RY~K~~~k~-------~~~~v~V-~~--l~~~~ggiLD~DD~l~dVldD 73 (85)
T 2ns5_A 12 TRVDVPC-GDGRMKVFSLIQQAVTRYRKAVAKD-------PNYWIQV-HR--LEHGDGGILDLDDILCDVADD 73 (85)
T ss_dssp EEEEEEE-SSSCCCHHHHHHHHHHHHHHHTTCC-------TTSCEEE-EE--EECSSSCEECTTSCHHHHSCT
T ss_pred EEEEEEC-CCCcccHHHHHHHHHHHHHHhcCCC-------CCcEEEE-EE--EEeCCCcEeCcccchhhhccC
Confidence 6667777 33 5567999999999998764432 4557664 21 14467788995 344444443
No 6
>3c0t_B Mediator of RNA polymerase II transcription subunit 8; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=18.16 E-value=30 Score=19.13 Aligned_cols=22 Identities=9% Similarity=0.141 Sum_probs=15.7
Q ss_pred CchhHHHHHhhHHhccCCCCCc
Q psy1373 194 DSGVADRILNRPRGIVTQRTVS 215 (231)
Q Consensus 194 d~~~Ke~ll~Di~eFL~~~t~~ 215 (231)
++.-.+..|.||-.|+.+..+.
T Consensus 2 eeqnanqmltdilsfmksgkra 23 (33)
T 3c0t_B 2 EEQNANQMLTDILSFMKSGKRA 23 (33)
T ss_dssp ---CHHHHHHHHHHHHHHCCCC
T ss_pred cchhHHHHHHHHHHHHHcchHH
Confidence 4566788999999999877653
No 7
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=17.08 E-value=1e+02 Score=21.44 Aligned_cols=28 Identities=18% Similarity=0.420 Sum_probs=21.2
Q ss_pred HHHHHHHhheeEEEEEcCCChhHHHHHHHHhhCC
Q psy1373 38 IGTILFRRHYMITLEIPCRDKSYHWLLHWITVRG 71 (231)
Q Consensus 38 ~~~~~~~~~~~~sveI~~~D~~Y~~v~~Wl~~~~ 71 (231)
.+..++.+. +.+.+..|..++.|+..++
T Consensus 56 ~L~~lL~sd------v~~E~~vf~av~~Wv~~d~ 83 (105)
T 2eqx_A 56 LLTDIISDG------VPCSQNPTEAIEAWINFNK 83 (105)
T ss_dssp HHHHHHHTC------EETTSCHHHHHHHHHHTTH
T ss_pred HHHHHHcCC------CCCHHHHHHHHHHHHHcCH
Confidence 344555553 7899999999999998654
No 8
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=15.03 E-value=4.4e+02 Score=20.76 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=45.9
Q ss_pred EEEEEEccc--hHHHHHHHHHHHHHHHHhCCCeEEEEecCCCCceeCCCCCCCCCCCeeeeCchhHHHHHhhHHh
Q psy1373 135 TVTNCNNGG--VIVLRSKRQEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILNRPRG 207 (231)
Q Consensus 135 ~ltls~lg~--~~~l~~lL~ear~~~~~~~~~~t~Iy~~~~~~W~~~~~~r~~Rpl~TViLd~~~Ke~ll~Di~e 207 (231)
.|.|+|++- -+.|++-|..|...+.......+.|+.-..+.-+ |++.-+|...-+++|+++-+
T Consensus 94 ~ieltc~~~dGIe~IK~AL~~a~~~~~~~~~~~ikI~lvgaP~Y~----------i~~~~~Dkk~g~~~L~~aie 158 (188)
T 1yz7_A 94 EFEITVPKPNGVEIIKEALIRARDRANKEKDVEVKFTYLGAPRYR----------IDITAPDYYKAEEVLESIAE 158 (188)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHHHHHHTSTTCEEEEEECSTTEEE----------EEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCchHHHHHHHHHHHHhcccCCCCCcEEEEEEcCcEEE----------EEEeeCCHHHHHHHHHHHHH
Confidence 488999999 8999999998866434444556888875544333 56778888888888877543
No 9
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=14.97 E-value=3.1e+02 Score=19.02 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=45.2
Q ss_pred EEEEEEccc--hHHHHHHHHHHHHHHHHhCCC--eEEEEecCCCCceeCCCCCCCCCCCeeeeCchhHHHHHhhHH
Q psy1373 135 TVTNCNNGG--VIVLRSKRQEARTLALKQYEG--KTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILNRPR 206 (231)
Q Consensus 135 ~ltls~lg~--~~~l~~lL~ear~~~~~~~~~--~t~Iy~~~~~~W~~~~~~r~~Rpl~TViLd~~~Ke~ll~Di~ 206 (231)
.|.++|++. -+.+|+-|.+|.....+.... ++.||.-..+.-+ |++.-+|...-+++|+++-
T Consensus 9 ~iel~c~~~dGIe~IK~AL~~a~~~~~~~~~~~~~vkI~~vgaP~Y~----------i~~~~~D~k~ge~~L~~ai 74 (93)
T 2qn6_B 9 LITVRTNEPLGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYR----------VDVVGTNPKEASEALNQII 74 (93)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHTTHHHHCTTEEEEEEEESSTTEEE----------EEEEESCHHHHHHHHHHHH
T ss_pred EEEEEeCCCchHHHHHHHHHHHHhhcccccCccceEEEEEEcCCeEE----------EEEEecCHHHHHHHHHHHH
Confidence 488999998 899999999886655543322 3788875544333 5678888888888888753
No 10
>3lb6_A Interleukin-13, IL-13; cytokine, decoy, decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo sapiens} PDB: 3lb6_B*
Probab=11.53 E-value=83 Score=23.56 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=11.2
Q ss_pred EEEEEEccc-h--------HHHHHHHHHHHHHHHH
Q psy1373 135 TVTNCNNGG-V--------IVLRSKRQEARTLALK 160 (231)
Q Consensus 135 ~ltls~lg~-~--------~~l~~lL~ear~~~~~ 160 (231)
.|-|+|+|. . ..|+||++|--..-..
T Consensus 8 vial~c~ggLasp~PVp~s~aLkELIeELvNITqn 42 (132)
T 3lb6_A 8 VIALTCLGGFASPGPVPPSTALRELIEELVNITQN 42 (132)
T ss_dssp ----------------CCSHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHHhhccC
Confidence 367899997 3 2389999997765443
Done!