Query psy1373
Match_columns 231
No_of_seqs 115 out of 357
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 19:03:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1373.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/1373hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uv7a_ d.67.4.1 (A:) General 24.7 20 0.0015 22.9 2.3 19 51-69 28-46 (80)
2 d1kl9a1 a.60.14.1 (A:89-182) E 16.7 21 0.0015 23.8 1.0 21 187-207 73-93 (94)
3 d2qn6b1 d.58.51.1 (B:176-264) 15.6 1.4E+02 0.0099 19.0 6.1 62 135-206 7-72 (89)
4 d1uwva2 c.66.1.40 (A:75-432) r 12.3 1.5E+02 0.011 22.9 5.6 61 145-207 241-304 (358)
5 d2h2ja1 a.166.1.1 (A:311-486) 10.9 1.9E+02 0.014 20.6 5.2 34 47-80 2-35 (176)
6 d1rh5b_ f.23.28.1 (B:) Preprot 9.8 1.8E+02 0.013 17.0 3.9 23 18-40 30-52 (56)
7 d2b7ka1 c.47.1.10 (A:111-279) 9.5 66 0.0048 21.3 1.9 17 195-211 153-169 (169)
8 d1ckta_ a.21.1.1 (A:) High mob 9.2 29 0.0021 21.0 -0.2 11 183-193 1-11 (71)
9 d2peqa1 a.280.1.1 (A:2-109) Ru 8.7 1.1E+02 0.0081 20.4 2.8 17 56-72 33-49 (108)
10 d2fqla1 d.82.2.1 (A:61-172) C- 8.1 84 0.0061 21.0 1.9 17 98-114 73-90 (112)
No 1
>d1uv7a_ d.67.4.1 (A:) General secretion pathway protein M, EpsM {Vibrio cholerae [TaxId: 666]}
Probab=24.69 E-value=20 Score=22.92 Aligned_cols=19 Identities=16% Similarity=0.459 Sum_probs=16.1
Q ss_pred EEEcCCChhHHHHHHHHhh
Q psy1373 51 LEIPCRDKSYHWLLHWITV 69 (231)
Q Consensus 51 veI~~~D~~Y~~v~~Wl~~ 69 (231)
|.|.=++-.|+.+|.||..
T Consensus 28 vqV~ld~v~F~~ll~WL~~ 46 (80)
T d1uv7a_ 28 MQVWIQPLPFSQLVSWIAY 46 (80)
T ss_dssp EEEEECCBCHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHH
Confidence 5666688999999999974
No 2
>d1kl9a1 a.60.14.1 (A:89-182) Eukaryotic initiation factor 2alpha, eIF2alpha, domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.69 E-value=21 Score=23.78 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=18.0
Q ss_pred CCCeeeeCchhHHHHHhhHHh
Q psy1373 187 PLNSVVLDSGVADRILNRPRG 207 (231)
Q Consensus 187 pl~TViLd~~~Ke~ll~Di~e 207 (231)
-|+..-||+++|+.|+++|+.
T Consensus 73 il~~l~l~~~vk~~L~~~I~r 93 (94)
T d1kl9a1 73 ILDSLDLNEDEREVLINNINR 93 (94)
T ss_dssp GGTTSSCCHHHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhc
Confidence 567777999999999999973
No 3
>d2qn6b1 d.58.51.1 (B:176-264) eIF-2-alpha, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=15.65 E-value=1.4e+02 Score=19.01 Aligned_cols=62 Identities=19% Similarity=0.135 Sum_probs=45.6
Q ss_pred EEEEEEccc--hHHHHHHHHHHHHHHHHhC--CCeEEEEecCCCCceeCCCCCCCCCCCeeeeCchhHHHHHhhHH
Q psy1373 135 TVTNCNNGG--VIVLRSKRQEARTLALKQY--EGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILNRPR 206 (231)
Q Consensus 135 ~ltls~lg~--~~~l~~lL~ear~~~~~~~--~~~t~Iy~~~~~~W~~~~~~r~~Rpl~TViLd~~~Ke~ll~Di~ 206 (231)
.++|+|+.. -+.+|+-|..|.....+.. ...+.|+.-..+.++ |++.-.|....+++|+.+-
T Consensus 7 ~i~l~~~~~dGIe~IK~aL~~a~~~~~~~~~~d~~i~i~~igaP~Yr----------i~v~a~D~k~ae~~l~~a~ 72 (89)
T d2qn6b1 7 LITVRTNEPLGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYR----------VDVVGTNPKEASEALNQII 72 (89)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHTTHHHHCTTEEEEEEEESSTTEEE----------EEEEESCHHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhcccccCCCccEEEEEecCCeEE----------EEEEeCCHHHHHHHHHHHH
Confidence 489999988 9999999999998876643 456777776555555 3466677777777776653
No 4
>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=12.31 E-value=1.5e+02 Score=22.89 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCCCCceeCCCCCCCCCCCeeeeCc---hhHHHHHhhHHh
Q psy1373 145 IVLRSKRQEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDS---GVADRILNRPRG 207 (231)
Q Consensus 145 ~~l~~lL~ear~~~~~~~~~~t~Iy~~~~~~W~~~~~~r~~Rpl~TViLd~---~~Ke~ll~Di~e 207 (231)
+..++-++.|+..+....-.++..+..+-...-. .....+.+.|.||||+ |.. +++..+-+
T Consensus 241 E~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~-~~~~~~~~~d~vilDPPR~G~~-~~~~~l~~ 304 (358)
T d1uwva2 241 EGVPALVEKGQQNARLNGLQNVTFYHENLEEDVT-KQPWAKNGFDKVLLDPARAGAA-GVMQQIIK 304 (358)
T ss_dssp ESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCS-SSGGGTTCCSEEEECCCTTCCH-HHHHHHHH
T ss_pred cCcHHHHHHHHHhHHhcccccceeeecchhhhhh-hhhhhhccCceEEeCCCCccHH-HHHHHHHH
Confidence 3456677888888887777777777755333322 1444567789999995 433 34544443
No 5
>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}
Probab=10.91 E-value=1.9e+02 Score=20.57 Aligned_cols=34 Identities=26% Similarity=0.316 Sum_probs=27.7
Q ss_pred eeEEEEEcCCChhHHHHHHHHhhCCCCceeEEEE
Q psy1373 47 YMITLEIPCRDKSYHWLLHWITVRGAKKTQHLSV 80 (231)
Q Consensus 47 ~~~sveI~~~D~~Y~~v~~Wl~~~~~~~sr~l~v 80 (231)
|..+++|+.+|+.|..=..=+..+....+..+.+
T Consensus 2 y~l~l~i~~sDpl~~~K~~lLe~~Gl~~~~~F~l 35 (176)
T d2h2ja1 2 YTLTLEISESDPFFDDKLDVAESNGFAQTAYFDI 35 (176)
T ss_dssp EEEEEECCTTSTTHHHHHHHHHTTTCCSEEEEEE
T ss_pred eeEEEecCCCCcCHHHHHHHHHHcCCCCCCceEe
Confidence 6789999999999999999888887544555555
No 6
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=9.77 E-value=1.8e+02 Score=17.02 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=13.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q psy1373 18 AGFGLFGLGAGAAILRKGAQIGT 40 (231)
Q Consensus 18 ~g~gL~~lg~~~~~~r~~~~~~~ 40 (231)
.|+|++++|++-.+.+-....+.
T Consensus 30 ~~iG~~i~G~IGf~I~li~~~i~ 52 (56)
T d1rh5b_ 30 TALGISLLGIIGYIIHVPATYIK 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46777777765555554444333
No 7
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.49 E-value=66 Score=21.28 Aligned_cols=17 Identities=18% Similarity=0.284 Sum_probs=13.5
Q ss_pred chhHHHHHhhHHhccCC
Q psy1373 195 SGVADRILNRPRGIVTQ 211 (231)
Q Consensus 195 ~~~Ke~ll~Di~eFL~~ 211 (231)
+...++|++||+.+|.+
T Consensus 153 ~~~~~~I~e~ik~ll~~ 169 (169)
T d2b7ka1 153 KTGVDKIVEHVKSYVPA 169 (169)
T ss_dssp THHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 45567899999999864
No 8
>d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=9.20 E-value=29 Score=20.96 Aligned_cols=11 Identities=27% Similarity=0.374 Sum_probs=8.3
Q ss_pred CCCCCCCeeee
Q psy1373 183 KRRRPLNSVVL 193 (231)
Q Consensus 183 r~~Rpl~TViL 193 (231)
||+||++.-+|
T Consensus 1 KPKrP~say~~ 11 (71)
T d1ckta_ 1 KPRGKMSSYAF 11 (71)
T ss_dssp CCCCCCCHHHH
T ss_pred CcCCCCCHHHH
Confidence 68888887655
No 9
>d2peqa1 a.280.1.1 (A:2-109) RuBisCo chaperone RbcX {Synechococcus sp. pcc 7002 [TaxId: 32049]}
Probab=8.66 E-value=1.1e+02 Score=20.43 Aligned_cols=17 Identities=12% Similarity=0.132 Sum_probs=15.1
Q ss_pred CChhHHHHHHHHhhCCC
Q psy1373 56 RDKSYHWLLHWITVRGA 72 (231)
Q Consensus 56 ~D~~Y~~v~~Wl~~~~~ 72 (231)
+.+.|.|+.++++.+|.
T Consensus 33 np~~~~wL~~F~~~~~~ 49 (108)
T d2peqa1 33 NPGQAIWLGEFSKRHPI 49 (108)
T ss_dssp CHHHHHHHHHHHHHSCT
T ss_pred CcHhHHHHHHHHhcCCC
Confidence 57899999999999884
No 10
>d2fqla1 d.82.2.1 (A:61-172) C-terminal domain of frataxin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=8.08 E-value=84 Score=21.02 Aligned_cols=17 Identities=29% Similarity=0.751 Sum_probs=11.4
Q ss_pred EecCCCceEEEE-cCEEE
Q psy1373 98 FIPSIGTHLFSY-QGNWI 114 (231)
Q Consensus 98 ~~P~~G~h~F~y-~G~~~ 114 (231)
=.|..|.|.|.| +|.|+
T Consensus 73 aSp~sG~~~f~~~~~~W~ 90 (112)
T d2fqla1 73 ASPLSGPNRFDLLNGEWV 90 (112)
T ss_dssp EETTTEEEEEEESSSCEE
T ss_pred ecCCCCcccceecCCeEE
Confidence 346678777888 45554
Done!