RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1373
(231 letters)
>gnl|CDD|214980 smart01024, BCS1_N, This domain is found at the N terminal of the
mitochondrial ATPase BSC1. It encodes the import and
intramitochondrial sorting for the protein.
Length = 170
Score = 194 bits (495), Expect = 3e-63
Identities = 80/171 (46%), Positives = 111/171 (64%), Gaps = 3/171 (1%)
Query: 23 FGLGAGAAILRKGAQIGTILFRRHYMITLEIPCRDKSYHWLLHWITVRGA-KKTQHLSVE 81
LGA A LR+G + L RR +++TLE+P +D+SY WLL W++ + ++++HLSVE
Sbjct: 1 MLLGAAGAFLRRGISVAASLIRRRFLVTLEVPSKDESYAWLLEWLSQQPFRQRSRHLSVE 60
Query: 82 TSFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVT-NCN 140
TS+ + D G T + F+P GTH F Y+G WI V R RE T D++ G P+ET+T
Sbjct: 61 TSYTQHDNGKSSTSFSFVPGPGTHWFWYKGRWIWVTREREKTMADMRTGSPFETLTLTTL 120
Query: 141 NGGVIVLRSKRQEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSV 191
V + +EAR LALK+ EGKTV+YTA G EWR F P+R+RPL+SV
Sbjct: 121 GRDRDVFKELLEEARELALKRTEGKTVIYTADGPEWRRF-APRRKRPLSSV 170
>gnl|CDD|219997 pfam08740, BCS1_N, BCS1 N terminal. This domain is found at the N
terminal of the mitochondrial ATPase BSC1. It encodes
the import and intramitochondrial sorting for the
protein.
Length = 179
Score = 148 bits (375), Expect = 4e-45
Identities = 70/182 (38%), Positives = 102/182 (56%), Gaps = 16/182 (8%)
Query: 23 FGLGAGAAILRKGAQIGTILFRRHYMITLEIPCRDKSYHWLLHWITVRG-AKKTQHLSVE 81
LGA AA+LR+ G L RR++ TLE+ D+SY+W+L W++ + A++++ L
Sbjct: 1 MLLGAAAALLRRLLSSGWDLIRRYFTSTLEVRSDDESYNWVLEWLSQQPFAQRSRRLVAS 60
Query: 82 T----------SFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDIQQGI 131
T S E K + F+P GTH F Y+G I ER RE+ + D+
Sbjct: 61 TSLNSRRDSHLSVETSSAQEKKAPFRFVPGFGTHWFRYKGRLIWFERERETKSYDLS--T 118
Query: 132 PWETVT-NCNNGGVIVLRSKRQEARTLALKQYEGKTVMYTALGSE-WRPFGHPKRRRPLN 189
P+ET+T +L+ +EAR LALK+ EGKTV+Y A GSE WR G P+ +RPL+
Sbjct: 119 PFETLTLTTLGRSRQILKELLEEARALALKKDEGKTVIYRADGSEGWRR-GAPRPKRPLS 177
Query: 190 SV 191
+V
Sbjct: 178 TV 179
>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 596
Score = 42.3 bits (100), Expect = 1e-04
Identities = 30/203 (14%), Positives = 51/203 (25%), Gaps = 32/203 (15%)
Query: 4 MELIDSL-STNPYFGAGFGLFGLGAGAAILRKGAQIGT--ILFRRHYMITLEIPCRDKSY 60
EL+D L + Y G G GT L + +P S
Sbjct: 163 SELVDFLKNPKKYQALG-AKIPKGVLLVGPP-----GTGKTLLAKAVAGEAGVPFFSISG 216
Query: 61 HWLLHWITVRGAKKTQHLSVE--------TSFEKFDTGYVKTKYDFIPSIGTHLFSYQGN 112
+ GA + + L + ++ D + G N
Sbjct: 217 SDFVEMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRG--AGLGGGNDEREQTLN 274
Query: 113 WIRVERSR--ESTTLDIQQGIPWETVTNCNNGGVIVLRSKR---Q---EARTLALKQYEG 164
+ VE + + + V + +LR R Q E + ++
Sbjct: 275 QLLVEMDGFGGNEGVIVIAATNRPDVLD-----PALLRPGRFDRQILVELPDIKGREQIL 329
Query: 165 KTVMYTALGSEWRPFGHPKRRRP 187
K +E R P
Sbjct: 330 KVHAKNKPLAEDVDLKKIARGTP 352
>gnl|CDD|181631 PRK09059, PRK09059, dihydroorotase; Validated.
Length = 429
Score = 31.9 bits (73), Expect = 0.23
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 20/65 (30%)
Query: 1 MPFMELIDSLSTNPYFGAGFGLFGLGAGAAILRKGAQIGTILFRRHYMITLEIPCRDKSY 60
+P + LI++LST P +FGL AG L+ GA I+ I L+ P
Sbjct: 350 VPLLRLIEALSTRPA-----EIFGLPAGT--LKPGAPADIIV------IDLDEP------ 390
Query: 61 HWLLH 65
W++
Sbjct: 391 -WVVD 394
>gnl|CDD|178450 PLN02859, PLN02859, glutamine-tRNA ligase.
Length = 788
Score = 29.7 bits (67), Expect = 1.6
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 46 HYMITLEIPCRDKSYHWLLH 65
H + TLE R SY+WLL
Sbjct: 459 HSLCTLEFETRRASYYWLLD 478
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 28.4 bits (64), Expect = 3.9
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 6/37 (16%)
Query: 3 FMELIDSLSTN----PYFG--AGFGLFGLGAGAAILR 33
F +ID++S P AGFGLF + AG + R
Sbjct: 42 FGRIIDAISGKGDIFPLLAAWAGFGLFNIIAGVLVAR 78
>gnl|CDD|203976 pfam08545, ACP_syn_III, 3-Oxoacyl-[acyl-carrier-protein (ACP)]
synthase III. This domain is found on
3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
EC:2.3.1.180, the enzyme responsible for initiating the
chain of reactions of the fatty acid synthase in plants
and bacteria.
Length = 80
Score = 26.3 bits (59), Expect = 4.9
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 22 LFGLGAGAAILRKGAQIGTILF 43
LFG GAGA +L + G +
Sbjct: 51 LFGDGAGAVVLEATEEGGARIL 72
>gnl|CDD|188874 cd09768, Luminal_EIF2AK3, The Luminal domain, a dimerization
domain, of the Serine/Threonine protein kinase,
eukaryotic translation Initiation Factor 2-Alpha Kinase
3. The Luminal domain is a dimerization domain present
in eukaryotic translation Initiation Factor 2-Alpha
Kinase 3 (EIF2AK3), also called PKR-like Endoplasmic
Reticulum Kinase (PERK). EIF2AK3 is a serine/threonine
protein kinase (STK) and a type I transmembrane protein
that is localized in the endoplasmic reticulum (ER). As
a EIF2AK, it phosphorylates the alpha subunit of eIF-2,
resulting in the downregulation of protein synthesis.
eIF-2 phosphorylation is induced in response to cellular
stresses including virus infection, heat shock, nutrient
deficiency, and the accummulation of unfolded proteins,
among others. There are four distinct kinases that
phosphorylate eIF-2 and control protein synthesis:
General Control Non-derepressible-2 (GCN2), protein
kinase regulated by RNA (PKR), heme-regulated inhibitor
kinase (HRI), and PERK. PERK contains a luminal domain
bound with the chaperone BiP under unstressed conditions
and a cytoplasmic catalytic kinase domain. In response
to the accumulation of misfolded or unfolded proteins in
the ER, PERK is activated through the release of BiP,
allowing it to dimerize through its luminal domain and
autophosphorylate. It functions as the central regulator
of translational control during the Unfolded Protein
Response (UPR) pathway. In addition to the eIF-2 alpha
subunit, PERK also phosphorylates Nrf2, a leucine zipper
transcription factor which regulates cellular redox
status and promotes cell survival during the UPR.
Length = 301
Score = 27.7 bits (62), Expect = 5.6
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 80 VETSFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWI 114
V +S + IPS+ L+ + G I
Sbjct: 35 VSSSLSTLELINNGKSVRLIPSLDGSLYQFDGESI 69
>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
(KASIII) initiates the elongation in type II fatty acid
synthase systems. It is found in bacteria and plants.
Elongation of fatty acids in the type II systems occurs
by Claisen condensation of malonyl-acyl carrier protein
(ACP) with acyl-ACP. KASIII initiates this process by
specifically using acetyl-CoA over acyl-CoA.
Length = 320
Score = 27.1 bits (61), Expect = 7.4
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 22 LFGLGAGAAILRKGAQIGTIL 42
LFG GAGA +L + IL
Sbjct: 155 LFGDGAGAVVLEATEEDPGIL 175
>gnl|CDD|224323 COG1405, SUA7, Transcription initiation factor TFIIIB, Brf1
subunit/Transcription initiation factor TFIIB
[Transcription].
Length = 285
Score = 27.3 bits (61), Expect = 7.6
Identities = 12/32 (37%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 173 GSEWRPFGHPKRRR---PLNSVVLDSGVADRI 201
G EWR F RR PL + D G++ I
Sbjct: 38 GPEWRAFDERHERRVGAPLTPSIHDKGLSTII 69
>gnl|CDD|218347 pfam04955, HupE_UreJ, HupE / UreJ protein. This family of proteins
are hydrogenase / urease accessory proteins. The
alignment contains many conserved histidines that are
likely to be involved in nickel binding. The members
usually have five membrane-spanning regions.
Length = 180
Score = 26.8 bits (60), Expect = 8.6
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 4 MELIDSLSTNPYFGAGFGL-------FGLGAGAAILRKGAQIGT 40
EL S + AGF L G+G G + R A + T
Sbjct: 124 TELPGGASA-LGYAAGFVLATALLHAAGIGLGLLLARAAAALLT 166
>gnl|CDD|236198 PRK08243, PRK08243, 4-hydroxybenzoate 3-monooxygenase; Validated.
Length = 392
Score = 27.1 bits (61), Expect = 9.5
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 180 GHPKRRRPLNSVVLDSGVADRILNRPR-GIVTQRTV 214
G ++SVVL+ + + R R G++ Q TV
Sbjct: 18 GQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTV 53
>gnl|CDD|119320 cd06574, TM_PBP1_branched-chain-AA_like, Transmembrane subunit (TM)
of Periplasmic Binding Protein (PBP)-dependent
ATP-Binding Cassette (ABC) transporters which are
involved in the uptake of branched-chain amino acids
(AAs), as well as TMs of transporters involved in the
uptake of monosaccharides including ribose, galactose,
and arabinose. These transporters generally bind type 1
PBPs. PBP-dependent ABC transporters consist of a PBP,
two TMs, and two cytoplasmic ABCs, and are mainly
involved in importing solutes from the environment. The
solute is captured by the PBP which delivers it to a
gated translocation pathway formed by the two TMs. The
two ABCs bind and hydrolyze ATP and drive the transport
reaction. This group includes Escherichia coli LivM and
LivH, two TMs which heterodimerize to form the
translocation pathway of the E. coli branched-chain AA
LIV-1/LS transporter. This transporter is comprised of
two TMs (LivM and LivH), two ABCs (LivG and LivF), and
one of two alternative PBPs, LivJ (LIV-BP) and LivK
(LS-BP). In addition to transporting branched-chain AAs
including leucine, isoleucine and valine, the E. coli
LIV-1/LS transporter is involved in the uptake of the
aromatic AA, phenylalanine. Included in this group are
proteins from transport systems that contain a single TM
which homodimerizes to generate the transmembrane pore;
for example E. coli RbsC, AlsC, and MglC, the TMs of the
high affinity ribose transporter, the D-allose
transporter and the galactose transporter, respectively.
The D-allose transporter may also to be involved in low
affinity ribose transport.
Length = 266
Score = 26.9 bits (60), Expect = 9.8
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 11/43 (25%)
Query: 13 NPYFGAGFGLFGLGA---GAAILRK--------GAQIGTILFR 44
+ G G G+ GL A G AI+ + G IG IL+R
Sbjct: 196 DVNMGIGTGVIGLAAVIIGGAIVGRRTIKASILGVIIGAILYR 238
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.426
Gapped
Lambda K H
0.267 0.0771 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,915,106
Number of extensions: 1108892
Number of successful extensions: 979
Number of sequences better than 10.0: 1
Number of HSP's gapped: 973
Number of HSP's successfully gapped: 18
Length of query: 231
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 137
Effective length of database: 6,768,326
Effective search space: 927260662
Effective search space used: 927260662
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.7 bits)