RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1373
         (231 letters)



>d1hn0a4 b.30.5.2 (A:619-899) Chondroitin ABC lyase I {Proteus
           vulgaris [TaxId: 585]}
          Length = 281

 Score = 26.8 bits (59), Expect = 2.1
 Identities = 15/114 (13%), Positives = 29/114 (25%), Gaps = 15/114 (13%)

Query: 15  YFGAGFGLFGLGAGAAILRKGAQIGTILFRRHYMITLEIPCRDKSYHWLLHWITVRGAKK 74
              A   L  +G+      K   + T LF+                   ++   +     
Sbjct: 140 VLAADNHLIFIGSNINSSDKNKNVETTLFQHAI--------TPTLNTLWINGQKIENMPY 191

Query: 75  TQHLS-VETSFEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDI 127
              L   +   +    GY+      I        S Q       ++R+ T  + 
Sbjct: 192 QTTLQQGDWLIDSNGNGYL------ITQAEKVNVSRQHQVSAENKNRQPTEGNF 239


>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli
           [TaxId: 562]}
          Length = 89

 Score = 23.7 bits (51), Expect = 9.2
 Identities = 6/24 (25%), Positives = 9/24 (37%)

Query: 183 KRRRPLNSVVLDSGVADRILNRPR 206
            R R    ++LD      + N  R
Sbjct: 24  FRNRQFAGLLLDQAFLAGLGNYLR 47


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0418    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 887,182
Number of extensions: 39906
Number of successful extensions: 70
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 7
Length of query: 231
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 149
Effective length of database: 1,281,736
Effective search space: 190978664
Effective search space used: 190978664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.2 bits)