RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13735
(792 letters)
>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Rho-associated
coiled-coil containing protein kinase (ROCK) and Nuclear
Dbf2-Related (NDR)-like kinase subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK- and NDR-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include ROCK and
ROCK-like proteins such as DMPK, MRCK, and CRIK, as well
as NDR and NDR-like proteins such as LATS, CBK1 and
Sid2p. ROCK and CRIK are effectors of the small GTPase
Rho, while MRCK is an effector of the small GTPase
Cdc42. NDR and NDR-like kinases contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. Proteins in this subfamily are involved in
regulating many cellular functions including
contraction, motility, division, proliferation,
apoptosis, morphogenesis, and cytokinesis.
Length = 350
Score = 263 bits (674), Expect = 3e-81
Identities = 105/316 (33%), Positives = 161/316 (50%), Gaps = 53/316 (16%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT-------IERDIMVKSKC 67
DF++ + I +G FG+++LV +K + + MK + + M ERDI+ +
Sbjct: 1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADS 60
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P+IV L+YSFQD H+Y +MEY+ GGD + LL E ARFYI EL A+ +H
Sbjct: 61 PWIVKLYYSFQDEEHLYLVMEYMPGGDLMNLLIR--KDVFPEETARFYIAELVLALDSVH 118
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIV----------------- 170
LG++HRDIKPDN+L+ A GH+KL DFG +++K + +
Sbjct: 119 KLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRR 178
Query: 171 -----------PVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFN 219
VGTP+Y+APEVL Y CD WS+GV+ YE+L G PF
Sbjct: 179 DHKQRRVRANSTVGTPDYIAPEVLR-------GTPYGLECDWWSLGVILYEMLYGFPPFY 231
Query: 220 YETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQKLDARL-NMDQVLGHPVF- 277
+TL TY+ I+ ++ FP +S ++ + L+ + RL + +++ HP F
Sbjct: 232 SDTLQETYNKIINWKE--SLRFPPDPPVSPEAIDLICRLLCDPEDRLGSFEEIKSHPFFK 289
Query: 278 -----DCLDSDPPCIP 288
+ ++ PP +P
Sbjct: 290 GIDWENLRETKPPFVP 305
>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Citron Rho-interacting kinase.
Serine/Threonine Kinases (STKs), Citron Rho-interacting
kinase (CRIK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The CRIK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CRIK is also called citron kinase. It contains
a catalytic domain, a central coiled-coil domain, and a
C-terminal region containing a Rho-binding domain (RBD),
a zinc finger, and a pleckstrin homology (PH) domain, in
addition to other motifs. CRIK, an effector of the small
GTPase Rho, plays an important function during
cytokinesis and affects its contractile process.
CRIK-deficient mice show severe ataxia and epilepsy as a
result of abnormal cytokinesis and massive apoptosis in
neuronal precursors. A Down syndrome critical region
protein TTC3 interacts with CRIK and inhibits
CRIK-dependent neuronal differentiation and neurite
extension.
Length = 330
Score = 252 bits (646), Expect = 2e-77
Identities = 118/332 (35%), Positives = 189/332 (56%), Gaps = 22/332 (6%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-------ERDIMVKSKCP 68
DFD+K + +G+FG++ +V EK + + + MK + + + ERDI+ S P
Sbjct: 2 DFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSP 61
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
+I L Y+FQD +++Y +MEY GGD ++LL N+ E A+FY+ EL A+ +H
Sbjct: 62 WIPQLQYAFQDKDNLYLVMEYQPGGDLLSLL-NRYEDQFDEDMAQFYLAELVLAIHSVHQ 120
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEG 188
+GYVHRDIKP+N+L+ TGH+KL DFGSA ++ N + S +PVGTP+Y+APEVL M G
Sbjct: 121 MGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNG 180
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLS 248
+ Y CD WS+GV++YE++ G +PF+ T TY++I+ + + + FP ++S
Sbjct: 181 DGKG-TYGVECDWWSLGVIAYEMIYGRSPFHEGTSAKTYNNIM--NFQRFLKFPEDPKVS 237
Query: 249 TAMVNFVQSLVQKLDARLNMDQVLGHPVFDCLD------SDPPCIPPPSQEN---KFHKK 299
+ ++ +QSL+ RL + + HP F +D S PP +P ++ F +
Sbjct: 238 SDFLDLIQSLLCGQKERLGYEGLCCHPFFSKIDWNNIRNSLPPFVPTLKSDDDTSNFDEP 297
Query: 300 DKRKASPSLKAFQ--KEGRYLDSALPLIGISY 329
+K S + K + LP +G S+
Sbjct: 298 EKNSTRRSQSSTTQLKPNGFSGKDLPFVGFSF 329
>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), AGC (Protein Kinases A, G and C) family,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The AGC family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and Phosphoinositide 3-Kinase (PI3K). Members of
this family include cAMP-dependent Protein Kinase (PKA),
cGMP-dependent Protein Kinase (PKG), Protein Kinase C
(PKC), Protein Kinase B (PKB), G protein-coupled
Receptor Kinase (GRK), Serum- and Glucocorticoid-induced
Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase
(p70S6K or S6K), among others. AGC kinases share an
activation mechanism based on the phosphorylation of up
to three sites: the activation loop (A-loop), the
hydrophobic motif (HM) and the turn motif.
Phosphorylation at the A-loop is required of most AGC
kinases, which results in a disorder-to-order transition
of the A-loop. The ordered conformation results in the
access of substrates and ATP to the active site. A
subset of AGC kinases with C-terminal extensions
containing the HM also requires phosphorylation at this
site. Phosphorylation at the HM allows the C-terminal
extension to form an ordered structure that packs into
the hydrophobic pocket of the catalytic domain, which
then reconfigures the kinase into an active bi-lobed
state. In addition, growth factor-activated AGC kinases
such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require
phosphorylation at the turn motif (also called tail or
zipper site), located N-terminal to the HM at the
C-terminal extension. AGC kinases regulate many cellular
processes including division, growth, survival,
metabolism, motility, and differentiation. Many are
implicated in the development of various human diseases.
Length = 250
Score = 249 bits (639), Expect = 2e-77
Identities = 99/267 (37%), Positives = 145/267 (54%), Gaps = 29/267 (10%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMK-----KVLREKMPNTI--ERDIMVKSKCPYIVNLFY 75
+ +G+FG + LV +K + + MK K+++ K ER+I+ + P+IV L Y
Sbjct: 1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHY 60
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
+FQ +Y ++EY GG+ + L G SE +ARFY E+ A++YLH LG ++RD
Sbjct: 61 AFQTEEKLYLVLEYAPGGELFSHLSK--EGRFSEERARFYAAEIVLALEYLHSLGIIYRD 118
Query: 136 IKPDNMLLSATGHLKLTDFGSATQ-VDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
+KP+N+LL A GH+KLTDFG A + + R + GTPEY+APEVL G
Sbjct: 119 LKPENILLDADGHIKLTDFGLAKELSSEGSRTNT--FCGTPEYLAPEVLL-------GKG 169
Query: 195 YTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNF 254
Y + D WS+GV+ YE+LTG PF E Y IL +D + FP LS +
Sbjct: 170 YGKAVDWWSLGVLLYEMLTGKPPFYAEDRKEIYEKIL----KDPLRFPEF--LSPEARDL 223
Query: 255 VQSLVQK-LDARL---NMDQVLGHPVF 277
+ L+QK RL +++ HP F
Sbjct: 224 ISGLLQKDPTKRLGSGGAEEIKAHPFF 250
>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic
domain. Phosphotransferases. Serine or
threonine-specific kinase subfamily.
Length = 254
Score = 248 bits (637), Expect = 5e-77
Identities = 98/268 (36%), Positives = 148/268 (55%), Gaps = 21/268 (7%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-----ERDIMVKSKCPYIV 71
++I + +G+FG +YL +K++ +K + ++K+ E I+ K K P IV
Sbjct: 1 YEILEKLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIV 60
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
L+ F+D + +Y +MEY GGD LL+ G LSE +ARFY+ ++ A++YLH G
Sbjct: 61 RLYDVFEDEDKLYLVMEYCEGGDLFDLLKK--RGRLSEDEARFYLRQILSALEYLHSKGI 118
Query: 132 VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
VHRD+KP+N+LL GH+KL DFG A Q+D ++ + VGTPEY+APEVL
Sbjct: 119 VHRDLKPENILLDEDGHVKLADFGLARQLDPGEKLTTF--VGTPEYMAPEVLL------- 169
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPF-NYETLDMTYSSILACDTEDTVSFPSSIRLSTA 250
GY + D+WS+GV+ YELLTG PF + L + I P +S
Sbjct: 170 GKGYGKAVDIWSLGVILYELLTGKPPFPGDDQLLELFKKIGKPKPPF---PPPEWDISPE 226
Query: 251 MVNFVQSLVQKL-DARLNMDQVLGHPVF 277
+ ++ L+ K + RL ++ L HP F
Sbjct: 227 AKDLIRKLLVKDPEKRLTAEEALQHPFF 254
>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase. Serine/Threonine Kinases
(STKs), Rho-associated coiled-coil containing protein
kinase (ROCK) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The ROCK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. ROCK is also referred to as Rho-associated
kinase or simply as Rho kinase. It contains an
N-terminal extension, a catalytic kinase domain, and a
long C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain. It is activated via interaction with Rho GTPases
and is involved in many cellular functions including
contraction, adhesion, migration, motility,
proliferation, and apoptosis. The ROCK subfamily
consists of two isoforms, ROCK1 and ROCK2, which may be
functionally redundant in some systems, but exhibit
different tissue distributions. Both isoforms are
ubiquitously expressed in most tissues, but ROCK2 is
more prominent in brain and skeletal muscle while ROCK1
is more pronounced in the liver, testes, and kidney.
Studies in knockout mice result in different phenotypes,
suggesting that the two isoforms do not compensate for
each other during embryonic development.
Length = 370
Score = 246 bits (631), Expect = 1e-74
Identities = 121/351 (34%), Positives = 196/351 (55%), Gaps = 29/351 (8%)
Query: 1 KDVVKELRQKNVSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKM---PNTI 57
+ +++ + + A DFD+ + I +G FG++ LV K S + MK + + +M ++
Sbjct: 29 EKAAEKITKLRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSA 88
Query: 58 ----ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKAR 113
ERDIM + +IV L Y+FQD ++Y +MEY+ GGD V L+ N + E AR
Sbjct: 89 FFWEERDIMAHANSEWIVQLHYAFQDDKYLYMVMEYMPGGDLVNLMSNYD---IPEKWAR 145
Query: 114 FYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVG 173
FY E+ A+ +H +G++HRD+KPDNMLL +GHLKL DFG+ ++D NG ++ VG
Sbjct: 146 FYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVG 205
Query: 174 TPEYVAPEVLEWMEGNHGSDGYTG-SCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILA 232
TP+Y++PEVL+ + G DGY G CD WS+GV YE+L G TPF ++L TYS I+
Sbjct: 206 TPDYISPEVLK----SQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIM- 260
Query: 233 CDTEDTVSFPSSIRLSTAMVNFVQSLVQKLDARL---NMDQVLGHPVF-------DCL-D 281
D +++++FP I +S + + + + + RL +D++ HP F D + +
Sbjct: 261 -DHKNSLTFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKNDQWTFDNIRE 319
Query: 282 SDPPCIPP-PSQENKFHKKDKRKASPSLKAFQKEGRYLDSALPLIGISYTG 331
+ P +P S + + D + + F + + LP IG +Y+
Sbjct: 320 TVAPVVPELSSDIDTSNFDDIEDDDKNEETFPLPKAFAGNQLPFIGFTYSK 370
>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated
serine/threonine kinase-like proteins. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MAST kinase subfamily
includes MAST kinases, MAST-like (MASTL) kinases, and
fungal kinases with similarity to Saccharomyces
cerevisiae Rim15 and Schizosaccharomyces pombe cek1.
MAST kinases contain an N-terminal domain of unknown
function, a central catalytic domain, and a C-terminal
PDZ domain that mediates protein-protein interactions.
MASTL kinases carry only a catalytic domain which
contains a long insert relative to other kinases. The
fungal kinases in this subfamily harbor other domains in
addition to a central catalytic domain, which also
contains an insert relative to MAST kinases like MASTL.
Rim15 contains a C-terminal signal receiver (REC) domain
while cek1 contains an N-terminal PAS domain. MAST
kinases are cytoskeletal associated kinases of unknown
function that are also expressed at neuromuscular
junctions and postsynaptic densities. The fungal
proteins Rim15 and cek1 are involved in the regulation
of meiosis and mitosis, respectively.
Length = 265
Score = 237 bits (606), Expect = 2e-72
Identities = 97/280 (34%), Positives = 155/280 (55%), Gaps = 37/280 (13%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT-------IERDIMVKSKCPYIVNLFY 75
I +G +G ++L ++K + + + +K + + M ERDI+ +++ PY+V L+Y
Sbjct: 1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYY 60
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
SFQ ++Y +MEY+ GGD +LLEN G L E AR YI E+ A++YLH G +HRD
Sbjct: 61 SFQGKKNLYLVMEYLPGGDLASLLEN--VGSLDEDVARIYIAEIVLALEYLHSNGIIHRD 118
Query: 136 IKPDNMLLSATGHLKLTDFG---------SATQVDKNGRIKSIVPVGTPEYVAPEVLEWM 186
+KPDN+L+ + GHLKLTDFG D K I VGTP+Y+APEV+
Sbjct: 119 LKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRI--VGTPDYIAPEVIL-- 174
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIR 246
G++ + D WS+G + YE L G PF+ ET + + +IL E +P +
Sbjct: 175 -----GQGHSKTVDWWSLGCILYEFLVGIPPFHGETPEEIFQNILNGKIE----WPEDVE 225
Query: 247 LSTAMVNFVQSL-----VQKLDARLNMDQVLGHPVFDCLD 281
+S ++ + L ++L A+ +++++ HP F +D
Sbjct: 226 VSDEAIDLISKLLVPDPEKRLGAK-SIEEIKNHPFFKGID 264
>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy
protein kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Myotonic Dystrophy
protein kinase (DMPK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The DMPK-like subfamily is composed of DMPK
and DMPK-related cell division control protein 42
(Cdc42) binding kinase (MRCK). Three isoforms of MRCK
are known, named alpha, beta and gamma. The DMPK gene is
implicated in myotonic dystrophy 1 (DM1), an inherited
multisystemic disorder with symptoms that include muscle
hyperexcitability, progressive muscle weakness and
wasting, cataract development, testicular atrophy, and
cardiac conduction defects. The genetic basis for DM1 is
the mutational expansion of a CTG repeat in the 3'-UTR
of DMPK. DMPK is expressed in skeletal and cardiac
muscles, and in central nervous tissues. The functional
role of DMPK is not fully understood. It may play a role
in the signal transduction and homeostasis of calcium.
MRCK is activated via interaction with the small GTPase
Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent
cell motility. MRCKgamma is expressed in heart and
skeletal muscles, unlike MRCKalpha and MRCKbeta, which
are expressed ubiquitously.
Length = 331
Score = 236 bits (605), Expect = 2e-71
Identities = 120/336 (35%), Positives = 185/336 (55%), Gaps = 27/336 (8%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE-------RDIMVKSKCP 68
DF+I + I +G FG++ +V+ K + + MK + + +M E RD++V
Sbjct: 2 DFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRR 61
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
+I NL Y+FQD N++Y +M+Y GGD +TLL ++ L E ARFY+ E+ A+ +H
Sbjct: 62 WITNLHYAFQDENNLYLVMDYYVGGDLLTLL-SKFEDRLPEDMARFYLAEMVLAIDSVHQ 120
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEG 188
LGYVHRDIKPDN+LL GH++L DFGS ++ +G ++S V VGTP+Y++PE+L+ ME
Sbjct: 121 LGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMED 180
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPS-SIRL 247
G Y CD WS+GV YE+L G TPF E+L TY I+ + ++ FP +
Sbjct: 181 GKGR--YGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIM--NHKEHFQFPPDVTDV 236
Query: 248 STAMVNFVQSLVQKLDARL---NMDQVLGHPVFDCLD------SDPPCIP---PPSQENK 295
S + ++ L+ + RL + HP F+ +D S P +P P+ +
Sbjct: 237 SEEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEGIDWDNIRNSTAPYVPEVSSPTDTSN 296
Query: 296 FH-KKDKRKASPSLKAFQKEGRYLDSALPLIGISYT 330
F D + + SL G + + LP +G +YT
Sbjct: 297 FDVDDDDLRNTESLPP-SSHGAFSGNHLPFVGFTYT 331
>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 2. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK2 was the first identified target of
activated RhoA, and was found to play a role in stress
fiber and focal adhesion formation. It is prominently
expressed in the brain, heart, and skeletal muscles. It
is implicated in vascular and neurological disorders,
such as hypertension and vasospasm of the coronary and
cerebral arteries. ROCK2 is also activated by caspase-2
cleavage, resulting in thrombin-induced microparticle
generation in response to cell activation. Mice
deficient in ROCK2 show intrauterine growth retardation
and embryonic lethality because of placental
dysfunction.
Length = 370
Score = 219 bits (558), Expect = 3e-64
Identities = 117/347 (33%), Positives = 195/347 (56%), Gaps = 29/347 (8%)
Query: 3 VVKELRQKNVSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI----- 57
+V+++R+ + A D+D+ + I +G FG++ LV K S + MK + + +M
Sbjct: 31 IVRKIRKLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFF 90
Query: 58 --ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFY 115
ERDIM + P++V LF +FQD ++Y +MEY+ GGD V L+ N + E A+FY
Sbjct: 91 WEERDIMAFANSPWVVQLFCAFQDDKYLYMVMEYMPGGDLVNLMSNYD---VPEKWAKFY 147
Query: 116 IYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTP 175
E+ A+ +H +G +HRD+KPDNMLL GHLKL DFG+ ++D+ G ++ VGTP
Sbjct: 148 TAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTP 207
Query: 176 EYVAPEVLEWMEGNHGSDGYTG-SCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACD 234
+Y++PEVL+ + G DGY G CD WS+GV +E+L G TPF ++L TYS I+ D
Sbjct: 208 DYISPEVLK----SQGGDGYYGRECDWWSVGVFLFEMLVGDTPFYADSLVGTYSKIM--D 261
Query: 235 TEDTVSFPSSIRLSTAMVNFVQSLVQKLDARL---NMDQVLGHPVF--------DCLDSD 283
+++++FP + +S N + + + + RL ++++ HP F + ++
Sbjct: 262 HKNSLNFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKNDQWNWDNIRETA 321
Query: 284 PPCIPPPSQE-NKFHKKDKRKASPSLKAFQKEGRYLDSALPLIGISY 329
P +P S + + + D ++ F ++ + LP IG +Y
Sbjct: 322 APVVPELSSDIDSSNFDDIEDDKGDVETFPIPKAFVGNQLPFIGFTY 368
>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase beta.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) beta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKbeta is expressed
ubiquitously in many tissues.
Length = 331
Score = 217 bits (553), Expect = 5e-64
Identities = 121/335 (36%), Positives = 185/335 (55%), Gaps = 25/335 (7%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE-------RDIMVKSKCP 68
DF+I + I +G FG++ +V+ K + + MK + + +M E R+++V C
Sbjct: 2 DFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQ 61
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
+I L Y+FQD N++Y +M+Y GGD +TLL ++ L E ARFYI E+ A+ +H
Sbjct: 62 WITTLHYAFQDENYLYLVMDYYVGGDLLTLL-SKFEDRLPEDMARFYIAEMVLAIHSIHQ 120
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEG 188
L YVHRDIKPDN+LL GH++L DFGS +++++G ++S V VGTP+Y++PE+L+ ME
Sbjct: 121 LHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMED 180
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIR-L 247
G Y CD WS+GV YE+L G TPF E+L TY I+ + E+ FPS I +
Sbjct: 181 GMGK--YGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIM--NHEERFQFPSHITDV 236
Query: 248 STAMVNFVQSLVQKLDARL---NMDQVLGHPVFDCLDSD------PPCIP---PPSQENK 295
S + +Q L+ + RL ++ H F+ +D + P IP PS +
Sbjct: 237 SEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGIDWENIRNLEAPYIPDVSSPSDTSN 296
Query: 296 FHKKDKRKASPSLKAFQKEGRYLDSALPLIGISYT 330
F D +P + + LP +G +YT
Sbjct: 297 FDVDDDVLRNPEIAPPSSHTGFSGLHLPFVGFTYT 331
>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related
kinase-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related
(NDR) kinase subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The NDR subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. NDR kinases
regulate mitosis, cell growth, embryonic development,
and neurological processes. They are also required for
proper centrosome duplication. Higher eukaryotes contain
two NDR isoforms, NDR1 and NDR2. This subfamily also
contains fungal NDR-like kinases.
Length = 364
Score = 217 bits (554), Expect = 9e-64
Identities = 117/374 (31%), Positives = 179/374 (47%), Gaps = 67/374 (17%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT-------IERDIMVKSKC 67
DF+ + I +G FG++ LV++K + + + MKK+ + +M ERDI+ ++
Sbjct: 1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADN 60
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P++V L+YSFQD N++Y IMEY+ GGD +TLL + +E + RFYI E A+ +H
Sbjct: 61 PWVVKLYYSFQDENYLYLIMEYLPGGDMMTLLMKK--DTFTEEETRFYIAETILAIDSIH 118
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDK------------------------- 162
LGY+HRDIKPDN+LL A GH+KL+DFG T + K
Sbjct: 119 KLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKP 178
Query: 163 ------------NGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYE 210
N R + VGTP+Y+APEV GY CD WS+GV+ YE
Sbjct: 179 MSSKRKAETWKRNRRALAYSTVGTPDYIAPEVF-------LQTGYNKECDWWSLGVIMYE 231
Query: 211 LLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQKLDARL---N 267
+L G PF + TY I+ ++T+ FP + LS + ++ L + + RL
Sbjct: 232 MLVGYPPFCSDNPQETYRKIINW--KETLQFPDEVPLSPEAKDLIKRLCCEAERRLGNNG 289
Query: 268 MDQVLGHPVFDCLDSD-----PPCIPP----PSQENKFHKKDKRKASPSLKAFQKEGRYL 318
++++ HP F +D + P I P + + F ++ G+
Sbjct: 290 VNEIKSHPFFKGVDWEHIRERPAPIIPELKSITDTSNFDDFEEIDLDVPTSPGPPRGKIK 349
Query: 319 DSALPLIGISYTGE 332
L IG +Y
Sbjct: 350 SKDLAFIGYTYKRF 363
>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Rho-associated coiled-coil
containing protein kinase 1. Serine/Threonine Kinases
(STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ROCK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. ROCK contains an
N-terminal extension, a catalytic kinase domain, and a
C-terminal extension, which contains a coiled-coil
region encompassing a Rho-binding domain (RBD) and a
pleckstrin homology (PH) domain. ROCK is auto-inhibited
by the RBD and PH domain interacting with the catalytic
domain, and is activated via interaction with Rho
GTPases. ROCK1 is preferentially expressed in the liver,
lung, spleen, testes, and kidney. It mediates signaling
from Rho to the actin cytoskeleton. It is implicated in
the development of cardiac fibrosis, cardiomyocyte
apoptosis, and hyperglycemia. Mice deficient with ROCK1
display eyelids open at birth (EOB) and omphalocele
phenotypes due to the disorganization of actin filaments
in the eyelids and the umbilical ring.
Length = 371
Score = 216 bits (551), Expect = 3e-63
Identities = 117/349 (33%), Positives = 194/349 (55%), Gaps = 29/349 (8%)
Query: 1 KDVVKELRQKNVSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI--- 57
KD + ++R + A D+++ + I +G FG++ LV K + + MK + + +M
Sbjct: 29 KDTINKIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSA 88
Query: 58 ----ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKAR 113
ERDIM + P++V LFY+FQD ++Y +MEY+ GGD V L+ N + E AR
Sbjct: 89 FFWEERDIMAFANSPWVVQLFYAFQDDRYLYMVMEYMPGGDLVNLMSNYD---VPEKWAR 145
Query: 114 FYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVG 173
FY E+ A+ +H +G++HRD+KPDNMLL +GHLKL DFG+ +++K G ++ VG
Sbjct: 146 FYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVG 205
Query: 174 TPEYVAPEVLEWMEGNHGSDGYTG-SCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILA 232
TP+Y++PEVL+ + G DGY G CD WS+GV YE+L G TPF ++L TYS I+
Sbjct: 206 TPDYISPEVLK----SQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIM- 260
Query: 233 CDTEDTVSFPSSIRLSTAMVNFVQSLVQKLDARL---NMDQVLGHPVF--------DCLD 281
+ +++++FP +S N + + + + RL ++++ H F D
Sbjct: 261 -NHKNSLTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQWAWETLRD 319
Query: 282 SDPPCIPPPSQE-NKFHKKDKRKASPSLKAFQKEGRYLDSALPLIGISY 329
+ P +P S + + + D + + F ++ + LP +G +Y
Sbjct: 320 TVAPVVPDLSSDIDTSNFDDIEEDKGEEETFPIPKAFVGNQLPFVGFTY 368
>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain.
Length = 260
Score = 211 bits (539), Expect = 6e-63
Identities = 86/271 (31%), Positives = 133/271 (49%), Gaps = 21/271 (7%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREK------MPNTIERDIMVKSKCPYI 70
+++ R + G+FG +Y + K + +K + + E I+ + P I
Sbjct: 1 YELLRKLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNI 60
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
V L +F+D +H+Y +MEY GGD L G LSE +A+ ++ + ++YLH G
Sbjct: 61 VRLIDAFEDKDHLYLVMEYCEGGDLFDYLSR--GGPLSEDEAKKIALQILRGLEYLHSNG 118
Query: 131 YVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNH 190
+HRD+KP+N+LL G +K+ DFG A ++ K+ + VGTP Y+APEVL
Sbjct: 119 IIHRDLKPENILLDENGVVKIADFGLAKKLLKSSSSLT-TFVGTPWYMAPEVLL------ 171
Query: 191 GSDGYTGSCDLWSIGVVSYELLTGSTPF---NYETLDMTYSSILACDTEDTVSFPSSIRL 247
G +GY D+WS+GV+ YELLTG PF N IL E P
Sbjct: 172 GGNGYGPKVDVWSLGVILYELLTGKPPFSGENILDQLQLIRRILGPPLE--FDEPKWSSG 229
Query: 248 STAMVNFVQS-LVQKLDARLNMDQVLGHPVF 277
S + ++ L + R +++L HP F
Sbjct: 230 SEEAKDLIKKCLNKDPSKRPTAEEILQHPWF 260
>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and
Dbf2p-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), ROCK- and NDR-like
subfamily, fungal Sid2p- and Dbf2p-like proteins,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sid2p- and
Dbf2p-like group is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This group contains fungal kinases including
Schizosaccharomyces pombe Sid2p and Saccharomyces
cerevisiae Dbf2p. Group members show similarity to NDR
kinases in that they contain an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Sid2p plays a
crucial role in the septum initiation network (SIN) and
in the initiation of cytokinesis. Dbf2p is important in
regulating the mitotic exit network (MEN) and in
cytokinesis.
Length = 333
Score = 208 bits (530), Expect = 1e-60
Identities = 106/292 (36%), Positives = 156/292 (53%), Gaps = 33/292 (11%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTF---VMKKVLREKMPNT----IERDIMVKSKC 67
DF I + QG +G ++L ++K + MKK L K+ ERDI+ +K
Sbjct: 1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKS 60
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
++V L Y+FQD ++Y MEYV GGDF TLL N G LSE ARFY+ E+ +AV LH
Sbjct: 61 EWLVKLLYAFQDDEYLYLAMEYVPGGDFRTLLNNL--GVLSEDHARFYMAEMFEAVDALH 118
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWME 187
LGY+HRD+KP+N L+ A+GH+KLTDFG + + S+ VG+P+Y+APEVL
Sbjct: 119 ELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVT--YANSV--VGSPDYMAPEVLR--- 171
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPS---- 243
GY + D WS+G + YE L G PF+ T + T+ ++ ++T+ P
Sbjct: 172 ----GKGYDFTVDYWSLGCMLYEFLCGFPPFSGSTPNETWENLK--YWKETLQRPVYDDP 225
Query: 244 SIRLSTAMVNFVQSLVQKLDARL-NMDQVLGHPVFDCLD------SDPPCIP 288
LS + + L+ R +++ + HP F +D PP +P
Sbjct: 226 RFNLSDEAWDLITKLINDPSRRFGSLEDIKNHPFFKEVDWNELRELKPPFVP 277
>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein
Serine/Threonine Kinase, cGMP-dependent protein kinase.
Serine/Threonine Kinases (STKs), cGMP-dependent protein
kinase (cGK or PKG) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The cGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mammals have two cGK isoforms
from different genes, cGKI and cGKII. cGKI exists as two
splice variants, cGKI-alpha and cGKI-beta. cGK consists
of an N-terminal regulatory domain containing a
dimerization and an autoinhibitory pseudosubstrate
region, two cGMP-binding domains, and a C-terminal
catalytic domain. Binding of cGMP to both binding sites
releases the inhibition of the catalytic center by the
pseudosubstrate region, allowing autophosphorylation and
activation of the kinase. cGKI is a soluble protein
expressed in all smooth muscles, platelets, cerebellum,
and kidney. It is also expressed at lower concentrations
in other tissues. cGKII is a membrane-bound protein that
is most abundantly expressed in the intestine. It is
also present in the brain nuclei, adrenal cortex,
kidney, lung, and prostate. cGKI is involved in the
regulation of smooth muscle tone, smooth cell
proliferation, and platelet activation. cGKII plays a
role in the regulation of secretion, such as renin
secretion by the kidney and aldosterone secretion by the
adrenal. It also regulates bone growth and the circadian
rhythm.
Length = 262
Score = 205 bits (524), Expect = 1e-60
Identities = 89/271 (32%), Positives = 143/271 (52%), Gaps = 30/271 (11%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKK-----VLREKMPNTI--ERDIMVKSKCPYIVNLFYSFQ 78
G FG + LV+ K + TF +K ++ I E++I+ + P+IV L+ +F+
Sbjct: 4 GGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFK 63
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
D ++Y +MEY GG+ T+L + G E ARFYI + A +YLH G ++RD+KP
Sbjct: 64 DKKYIYMLMEYCLGGELWTIL--RDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKP 121
Query: 139 DNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGS 198
+N+LL + G++KL DFG A ++ + + GTPEYVAPE++ + GY S
Sbjct: 122 ENLLLDSNGYVKLVDFGFAKKLKSGQKTWTF--CGTPEYVAPEIIL-------NKGYDFS 172
Query: 199 CDLWSIGVVSYELLTGSTPFNYETLD--MTYSSILACDTEDTVSFPSSIRLSTAMVNFVQ 256
D WS+G++ YELLTG PF + D Y+ IL + FP+ + A + ++
Sbjct: 173 VDYWSLGILLYELLTGRPPFGEDDEDPMEIYNDIL--KGNGKLEFPN--YIDKAAKDLIK 228
Query: 257 SLVQKLDA-RLNMDQ-----VLGHPVFDCLD 281
L+++ RL + + H F+ D
Sbjct: 229 QLLRRNPEERLGNLKGGIKDIKKHKWFNGFD 259
>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Phosphoinositide-dependent
kinase 1. Serine/Threonine Kinases (STKs),
Phosphoinositide-dependent kinase 1 (PDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PDK1
carries an N-terminal catalytic domain and a C-terminal
pleckstrin homology (PH) domain that binds
phosphoinositides. It phosphorylates the activation loop
of AGC kinases that are regulated by PI3K such as PKB,
SGK, and PKC, among others, and is crucial for their
activation. Thus, it contributes in regulating many
processes including metabolism, growth, proliferation,
and survival. PDK1 also has the ability to
autophosphorylate and is constitutively active in
mammalian cells. PDK1 is essential for normal embryo
development and is important in regulating cell volume.
Length = 280
Score = 203 bits (519), Expect = 1e-59
Identities = 89/295 (30%), Positives = 150/295 (50%), Gaps = 47/295 (15%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMK-----KVLREKMPN--TIERDIMVKSKC 67
DF + I +G+F + L +EK+++ + +K ++++EK IE++++ +
Sbjct: 1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNG 60
Query: 68 -PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYL 126
P I+ L+Y+FQD ++YF++EY G+ + + + +G L E RFY E+ A++YL
Sbjct: 61 HPGIIKLYYTFQDEENLYFVLEYAPNGELLQYI--RKYGSLDEKCTRFYAAEILLALEYL 118
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP--------------- 171
H G +HRD+KP+N+LL H+K+TDFG+A +D N +S
Sbjct: 119 HSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRR 178
Query: 172 ----VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTY 227
VGT EYV+PE+L N G S DLW++G + Y++LTG PF +T+
Sbjct: 179 FASFVGTAEYVSPELL-----NEKPAGK--SSDLWALGCIIYQMLTGKPPFRGSNEYLTF 231
Query: 228 SSILACDTEDTVSFPSSIRLSTAMVNFVQSLV-----QKLDARLNMDQVLGHPVF 277
IL + SFP + + ++ L+ +L D++ HP F
Sbjct: 232 QKILKLE----YSFPPNF--PPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF 280
>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine
Kinase, cAMP-dependent protein kinase. Serine/Threonine
Kinases (STKs), cAMP-dependent protein kinase (PKA)
subfamily, catalytic (c) subunit. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This subfamily is composed of the
cAMP-dependent proteins kinases, PKA and PRKX. The
inactive PKA holoenzyme is a heterotetramer composed of
two phosphorylated and active catalytic (C) subunits
with a dimer of regulatory (R) subunits. Activation is
achieved through the binding of the important second
messenger cAMP to the R subunits, which leads to the
dissociation of PKA into the R dimer and two active C
subunits. PKA is present ubiquitously in cells and
interacts with many different downstream targets. It
plays a role in the regulation of diverse processes such
as growth, development, memory, metabolism, gene
expression, immunity, and lipolysis.
Length = 290
Score = 202 bits (516), Expect = 4e-59
Identities = 100/298 (33%), Positives = 156/298 (52%), Gaps = 40/298 (13%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMK-----KVLREKMPNTI--ERDIMVKSKC 67
DF+ + + G+FG + LV K S + +K K+++ K + E+ I+ +
Sbjct: 1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRH 60
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P++VNL+ SFQD +++Y +MEYV GG+ + L G E ARFY ++ A++YLH
Sbjct: 61 PFLVNLYGSFQDDSNLYLVMEYVPGGELFSHLRKS--GRFPEPVARFYAAQVVLALEYLH 118
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWME 187
L V+RD+KP+N+LL + G++K+TDFG A +V GR ++ GTPEY+APE++
Sbjct: 119 SLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVK--GRTYTL--CGTPEYLAPEIIL--- 171
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRL 247
S GY + D W++G++ YE+L G PF + Y IL V FPS
Sbjct: 172 ----SKGYGKAVDWWALGILIYEMLAGYPPFFDDNPIQIYEKILEGK----VRFPSFF-- 221
Query: 248 STAMVNFVQSLVQK-LDARL-NMDQ----VLGHPVFDCLDSD--------PPCIPPPS 291
S + +++L+Q L RL N+ + HP F +D P IP
Sbjct: 222 SPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGIDWIALLQRKIEAPFIPKVK 279
>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of
Phototropin-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Phototropin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
phototropin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Included in this subfamily
are plant phototropins and predominantly uncharacterized
fungal STKs whose catalytic domains resemble the
phototropin kinase domain. One protein from Neurospora
crassa is called nrc-2. Phototropins are blue-light
receptors that control responses such as phototropism,
stromatal opening, and chloroplast movement in order to
optimize the photosynthetic efficiency of plants. They
are light-activated STKs that contain an N-terminal
photosensory domain and a C-terminal catalytic domain.
The N-terminal domain contains two LOV (Light, Oxygen or
Voltage) domains that binds FMN. Photoexcitation of the
LOV domains results in autophosphorylation at multiple
sites and activation of the catalytic domain. Neurospora
crassa nrc-2 plays a role in growth and development by
controlling entry into the conidiation program.
Length = 316
Score = 195 bits (498), Expect = 2e-56
Identities = 96/323 (29%), Positives = 159/323 (49%), Gaps = 57/323 (17%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPN-------TIERDIMVKSKC 67
F + + +G+ G ++LV K + F +K + +++M E++I+
Sbjct: 1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDH 60
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P++ L+ SFQ ++ +M+Y GG+ LL+ QP LSE ARFY E+ A++YLH
Sbjct: 61 PFLPTLYASFQTETYLCLVMDYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLH 120
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP---------------- 171
LG V+RD+KP+N+LL +GH+ L+DF + Q D S
Sbjct: 121 LLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSET 180
Query: 172 ------------VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFN 219
VGT EY+APEV+ DG+ + D W++G++ YE+L G+TPF
Sbjct: 181 FSEEPSFRSNSFVGTEEYIAPEVIS-------GDGHGSAVDWWTLGILLYEMLYGTTPFK 233
Query: 220 YETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQK-----LDARLNMDQVLGH 274
D T+S+IL + V+FP S +S++ + ++ L+ K L ++ ++ H
Sbjct: 234 GSNRDETFSNILKKE----VTFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQH 289
Query: 275 PVFDCLD------SDPPCIPPPS 291
P F ++ + PP IP P
Sbjct: 290 PFFRGVNWALIRHTTPPIIPRPD 312
>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, DMPK-related cell division
control protein 42 binding kinase alpha.
Serine/Threonine Kinases (STKs), DMPK-like subfamily,
DMPK-related cell division control protein 42 (Cdc42)
binding kinase (MRCK) alpha isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The DMPK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MRCK is activated via interaction with the
small GTPase Cdc42. MRCK/Cdc42 signaling mediates
myosin-dependent cell motility. MRCKalpha is expressed
ubiquitously in many tissues. It plays a role in the
regulation of peripheral actin reorganization and
neurite outgrowth. It may also play a role in the
transferrin iron uptake pathway.
Length = 332
Score = 196 bits (498), Expect = 2e-56
Identities = 120/341 (35%), Positives = 184/341 (53%), Gaps = 37/341 (10%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE-------RDIMVKSKCP 68
DF+I + I +G FG++ +V+ K + F MK + + +M E RD++V
Sbjct: 2 DFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQ 61
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
+I L Y+FQD N++Y +M+Y GGD +TLL ++ L E ARFY+ E+ A+ +H
Sbjct: 62 WITTLHYAFQDENNLYLVMDYYVGGDLLTLL-SKFEDRLPEDMARFYLAEMVIAIDSVHQ 120
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEG 188
L YVHRDIKPDN+L+ GH++L DFGS ++ ++G ++S V VGTP+Y++PE+L+ ME
Sbjct: 121 LHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMED 180
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIR-L 247
G Y CD WS+GV YE+L G TPF E+L TY I+ + ++ FP+ + +
Sbjct: 181 GKGK--YGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIM--NHKERFQFPAQVTDV 236
Query: 248 STAMVNFVQSLVQKLDARLNMDQV---LGHPVFDCLDSD------PPCIP---PPSQENK 295
S + ++ L+ + RL + + HP F +D D P IP P+ +
Sbjct: 237 SEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGIDWDNIRNCEAPYIPEVSSPTDTSN 296
Query: 296 FH------KKDKRKASPSLKAFQKEGRYLDSALPLIGISYT 330
F K + PS AF LP +G +YT
Sbjct: 297 FDVDDDCLKNSETMPPPSHTAFSGH------HLPFVGFTYT 331
>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
LATS subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. LATS was originally identified in Drosophila
using a screen for genes whose inactivation led to
overproliferation of cells. In tetrapods, there are two
LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in
mice results in the development of various tumors,
including sarcomas and ovarian cancer. LATS functions as
a tumor suppressor and is implicated in cell cycle
regulation.
Length = 376
Score = 196 bits (500), Expect = 5e-56
Identities = 109/320 (34%), Positives = 158/320 (49%), Gaps = 65/320 (20%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREK---MPNTI-----ERDIMVKSK 66
S F + I G FG++ LV + ++ + MK LR+ M N ERDI+ ++
Sbjct: 1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKT-LRKADVLMRNQAAHVKAERDILAEAD 59
Query: 67 CPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYL 126
++V L+YSFQD +++YF+M+Y+ GGD ++LL G E ARFYI EL A++ +
Sbjct: 60 NEWVVKLYYSFQDKDNLYFVMDYIPGGDMMSLLIRL--GIFEEDLARFYIAELTCAIESV 117
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSAT-----------QVDKNGRIKSIVP---- 171
H +G++HRDIKPDN+L+ GH+KLTDFG T Q + R S+ P
Sbjct: 118 HKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEW 177
Query: 172 ---------------------------VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSI 204
VGTP Y+APEVL GYT CD WS+
Sbjct: 178 SEIDRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLL-------RTGYTQLCDWWSV 230
Query: 205 GVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQKLDA 264
GV+ YE+L G PF +T T ++ + E T+ PS +LS + + L +
Sbjct: 231 GVILYEMLVGQPPFLADTPAETQLKVI--NWETTLHIPSQAKLSREASDLILRLCCGAED 288
Query: 265 RL---NMDQVLGHPVFDCLD 281
RL D++ HP F +D
Sbjct: 289 RLGKNGADEIKAHPFFKGID 308
>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear
Dbf2-Related kinase-like Protein Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), NDR kinase
subfamily, fungal NDR-like proteins, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The NDR subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This group is
composed of fungal NDR-like proteins including
Saccharomyces cerevisiae CBK1 (or CBK1p),
Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago
maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like
NDR kinase, group members contain an N-terminal
regulatory (NTR) domain and an insert within the
catalytic domain that contains an auto-inhibitory
sequence. CBK1 is an essential component in the RAM
(regulation of Ace2p activity and cellular
morphogenesis) network. CBK1 and Orb6 play similar roles
in coordinating cell morphology with cell cycle
progression. Ukc1 is involved in morphogenesis,
pathogenicity, and pigment formation. Cot1 plays a role
in polar tip extension.
Length = 377
Score = 190 bits (483), Expect = 1e-53
Identities = 104/324 (32%), Positives = 159/324 (49%), Gaps = 67/324 (20%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT-------IERDIMVKSKCP 68
DF + I +G FG++ LV++K + + MK +L+ +M ERD++ +S P
Sbjct: 2 DFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSP 61
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
++V+L+YSFQD ++Y IME++ GGD +T+L + SE RFY+ E A++ +H
Sbjct: 62 WVVSLYYSFQDAQYLYLIMEFLPGGDLMTMLIK--YDTFSEDVTRFYMAECVLAIEAVHK 119
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSAT------------------------------ 158
LG++HRDIKPDN+L+ GH+KL+DFG +T
Sbjct: 120 LGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSV 179
Query: 159 QVD----------------KNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLW 202
VD KN R+ + VGTP+Y+APE+ GY CD W
Sbjct: 180 AVDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFL-------QQGYGQECDWW 232
Query: 203 SIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQKL 262
S+G + +E L G PF E TY I+ +T+ FP I LS + ++ L+
Sbjct: 233 SLGAIMFECLIGWPPFCSENSHETYRKIINW--RETLYFPDDIHLSVEAEDLIRRLITNA 290
Query: 263 DARL---NMDQVLGHPVFDCLDSD 283
+ RL ++ HP F +D D
Sbjct: 291 ENRLGRGGAHEIKSHPFFRGVDWD 314
>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein
Serine/Threonine Kinase, Yank1. Serine/Threonine
Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Yank1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily
contains uncharacterized STKs with similarity to the
human protein designated Yank1 or STK32A.
Length = 258
Score = 185 bits (472), Expect = 2e-53
Identities = 91/271 (33%), Positives = 145/271 (53%), Gaps = 24/271 (8%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMK-----KVLREKMPNTI--ERDIMVKSKCPY 69
F++ R I +G FG + +V+++ + F MK K + + + ER I+ + P+
Sbjct: 2 FELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPF 61
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
+VNL+YSFQD ++Y +++ + GGD L + SE + +F+I E+ A++YLH
Sbjct: 62 LVNLWYSFQDEENMYLVVDLLLGGDLRYHLSQKVK--FSEEQVKFWICEIVLALEYLHSK 119
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGN 189
G +HRDIKPDN+LL GH+ +TDF AT+V + S GTP Y+APEVL
Sbjct: 120 GIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTST--SGTPGYMAPEVLC----- 172
Query: 190 HGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLST 249
GY+ + D WS+GV +YE L G P+ + + I A V +P++ ST
Sbjct: 173 --RQGYSVAVDWWSLGVTAYECLRGKRPYRGHSRTIR-DQIRAKQETADVLYPAT--WST 227
Query: 250 AMVNFVQSLVQ-KLDARL--NMDQVLGHPVF 277
++ + L++ RL N+ + HP F
Sbjct: 228 EAIDAINKLLERDPQKRLGDNLKDLKNHPYF 258
>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like
Protein Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Microtubule-associated serine/threonine
(MAST) kinase subfamily, fungal Rim15-like kinases,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include Saccharomyces
cerevisiae Rim15, Schizosaccharomyces pombe cek1, and
similar fungal proteins. They contain a central
catalytic domain, which contains an insert relative to
MAST kinases. In addition, Rim15 contains a C-terminal
signal receiver (REC) domain while cek1 contains an
N-terminal PAS domain. Rim15 (or Rim15p) functions as a
regulator of meiosis. It acts as a downstream effector
of PKA and regulates entry into stationary phase (G0).
Thus, it plays a crucial role in regulating yeast
proliferation, differentiation, and aging. Cek1 may
facilitate progression of mitotic anaphase.
Length = 260
Score = 181 bits (461), Expect = 6e-52
Identities = 87/233 (37%), Positives = 131/233 (56%), Gaps = 25/233 (10%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKM--PNTI-----ERDI-MVKSKCPYIVNLF 74
I +G FG +YL +++ + + F +K + + M N + ER I M++ + PY+ L+
Sbjct: 4 ISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLY 63
Query: 75 YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
YSFQ +++Y +MEY+ GGD +L+ + G L E A+ YI E+ V+ LH G +HR
Sbjct: 64 YSFQSKDYLYLVMEYLNGGDCASLI--KTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHR 121
Query: 135 DIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
DIKP+N+L+ TGHLKLTDFG + +N + VGTP+Y+APE + G G
Sbjct: 122 DIKPENLLIDQTGHLKLTDFGLSRNGLENKKF-----VGTPDYLAPETI---LGV----G 169
Query: 195 YTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACD---TEDTVSFPSS 244
D WS+G V +E L G PF+ ET D + +IL+ E+ F S
Sbjct: 170 DDKMSDWWSLGCVIFEFLFGYPPFHAETPDAVFDNILSRRINWPEEVKEFCSP 222
>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases. Protein Kinases
(PKs), catalytic (c) domain. PKs catalyze the transfer
of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The PK family is part of a larger
superfamily that includes the catalytic domains of RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, phosphoinositide 3-kinase (PI3K), and
actin-fragmin kinase. PKs make up a large family of
serine/threonine kinases, protein tyrosine kinases
(PTKs), and dual-specificity PKs that phosphorylate both
serine/threonine and tyrosine residues of target
proteins. Majority of protein phosphorylation, about
95%, occurs on serine residues while only 1% occurs on
tyrosine residues. Protein phosphorylation is a
mechanism by which a wide variety of cellular proteins,
such as enzymes and membrane channels, are reversibly
regulated in response to certain stimuli. PKs often
function as components of signal transduction pathways
in which one kinase activates a second kinase, which in
turn, may act on other kinases; this sequential action
transmits a signal from the cell surface to target
proteins, which results in cellular responses. The PK
family is one of the largest known protein families with
more than 100 homologous yeast enzymes and 550 human
proteins. A fraction of PK family members are
pseudokinases that lack crucial residues for catalytic
activity. The mutiplicity of kinases allows for specific
regulation according to substrate, tissue distribution,
and cellular localization. PKs regulate many cellular
processes including proliferation, division,
differentiation, motility, survival, metabolism,
cell-cycle progression, cytoskeletal rearrangement,
immunity, and neuronal functions. Many kinases are
implicated in the development of various human diseases
including different types of cancer.
Length = 215
Score = 172 bits (439), Expect = 2e-49
Identities = 70/195 (35%), Positives = 110/195 (56%), Gaps = 14/195 (7%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIER-----DIMVKSKCPYIVNLFYSF 77
+ +G FG +YL +K++ +K + +E + +E +I+ K P IV L+ F
Sbjct: 1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60
Query: 78 QDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIK 137
+D NH+Y +MEY GG LL+ G LSE + + ++ + ++YLH G +HRD+K
Sbjct: 61 EDENHLYLVMEYCEGGSLKDLLKENE-GKLSEDEILRILLQILEGLEYLHSNGIIHRDLK 119
Query: 138 PDNMLL-SATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYT 196
P+N+LL S G +KL DFG + + + + + VGTP Y+APEVL G Y+
Sbjct: 120 PENILLDSDNGKVKLADFGLSKLLTSDKSLLKTI-VGTPAYMAPEVLL------GKGYYS 172
Query: 197 GSCDLWSIGVVSYEL 211
D+WS+GV+ YEL
Sbjct: 173 EKSDIWSLGVILYEL 187
>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), cAMP-dependent protein kinase (PKA) subfamily,
PRKX-like kinases, catalytic (c) subunit. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PKA
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include human PRKX (X
chromosome-encoded protein kinase), Drosophila DC2, and
similar proteins. PRKX is present in many tissues
including fetal and adult brain, kidney, and lung. The
PRKX gene is located in the Xp22.3 subregion and has a
homolog called PRKY on the Y chromosome. An abnormal
interchange between PRKX aand PRKY leads to the sex
reversal disorder of XX males and XY females. PRKX is
implicated in granulocyte/macrophage lineage
differentiation, renal cell epithelial migration, and
tubular morphogenesis in the developing kidney.
Length = 291
Score = 174 bits (442), Expect = 6e-49
Identities = 97/299 (32%), Positives = 151/299 (50%), Gaps = 48/299 (16%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKK-----VLREKMPNTI--ERDIMVKSKC 67
D + + + G FG ++LV ++ S + + +K V+R K + E+ ++ +
Sbjct: 1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSH 60
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P+I+ LF++ D +Y +MEYV GG+ + L N G S S FY E+ A++YLH
Sbjct: 61 PFIIRLFWTEHDQRFLYMLMEYVPGGELFSYLRNS--GRFSNSTGLFYASEIVCALEYLH 118
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWME 187
V+RD+KP+N+LL GH+KLTDFG A ++ R ++ GTPEY+APEV+
Sbjct: 119 SKEIVYRDLKPENILLDKEGHIKLTDFGFAKKL----RDRTWTLCGTPEYLAPEVI---- 170
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRL 247
S G+ + D W++G++ YE+L G PF + Y ILA + FP + L
Sbjct: 171 ---QSKGHNKAVDWWALGILIYEMLVGYPPFFDDNPFGIYEKILA----GKLEFPRHLDL 223
Query: 248 STAMVNFVQSLVQKL-----DARL-NM----DQVLGHPVFDCLDSD--------PPCIP 288
+ + L++KL RL NM D V H F +D D PP +P
Sbjct: 224 ------YAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSVDWDDVPQRKLKPPIVP 276
>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAST kinase subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAST kinases contain an
N-terminal domain of unknown function, a central
catalytic domain, and a C-terminal PDZ domain that
mediates protein-protein interactions. There are four
mammalian MAST kinases, named MAST1-MAST4. MAST1 is also
referred to as syntrophin-associated STK (SAST), while
MAST2 is also called MAST205. MAST kinases are
cytoskeletal associated kinases of unknown function that
are also expressed at neuromuscular junctions and
postsynaptic densities. MAST1, MAST2, and MAST3 bind and
phosphorylate the tumor suppressor PTEN, and may
contribute to the regulation and stabilization of PTEN.
MAST2 is involved in the regulation of the Fc-gamma
receptor of the innate immune response in macrophages,
and may also be involved in the regulation of the Na+/H+
exchanger NHE3.
Length = 305
Score = 173 bits (441), Expect = 1e-48
Identities = 92/243 (37%), Positives = 136/243 (55%), Gaps = 30/243 (12%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKM--PNTI-----ERDIMVKSKC 67
DF+ + I G +G +YLV K++ F MKK+ ++ + N I ERDI+ ++
Sbjct: 1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAEN 60
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P++V++F SF+ H+ +MEYV GGD TLL+N G L AR Y E A++YLH
Sbjct: 61 PFVVSMFCSFETKRHLCMVMEYVEGGDCATLLKNI--GALPVDMARMYFAETVLALEYLH 118
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFG-------SAT------QVDKNGRIKSIVPV-G 173
G VHRD+KPDN+L+++ GH+KLTDFG S T ++K+ R V G
Sbjct: 119 NYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCG 178
Query: 174 TPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILAC 233
TPEY+APEV+ GY D W++G++ YE L G PF +T + + +++
Sbjct: 179 TPEYIAPEVIL-------RQGYGKPVDWWAMGIILYEFLVGCVPFFGDTPEELFGQVISD 231
Query: 234 DTE 236
D E
Sbjct: 232 DIE 234
>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR2 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. In
addition, NDR2 plays a role in regulating neuronal
growth and differentiation, as well as in facilitating
neurite outgrowth. It is also implicated in fear
conditioning as it contributes to the coupling of
neuronal morphological changes with fear-memory
consolidation. NDR2 is also referred to as STK38-like.
Length = 360
Score = 172 bits (438), Expect = 1e-47
Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 55/310 (17%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT-------IERDIMVKSKCP 68
DF+ + I +G FG++ LV++K + + + MK + + M ERDI+V++
Sbjct: 2 DFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGA 61
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
++V +FYSFQD ++Y IME++ GGD +TLL + LSE +FYI E A+ +H
Sbjct: 62 WVVKMFYSFQDKRNLYLIMEFLPGGDMMTLLMKK--DTLSEEATQFYIAETVLAIDAIHQ 119
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQV---------------------------- 160
LG++HRDIKPDN+LL A GH+KL+DFG T +
Sbjct: 120 LGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSK 179
Query: 161 ------DKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTG 214
KN R + VGTP+Y+APEV GY CD WS+GV+ YE+L G
Sbjct: 180 RKAETWKKNRRQLAYSTVGTPDYIAPEVFM-------QTGYNKLCDWWSLGVIMYEMLIG 232
Query: 215 STPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQKLDARL---NMDQV 271
PF ET TY ++ + ++T+ FP + +S + + + R+ ++++
Sbjct: 233 YPPFCSETPQETYRKVM--NWKETLVFPPEVPISEKAKDLILRFCTDSENRIGSNGVEEI 290
Query: 272 LGHPVFDCLD 281
HP F+ +D
Sbjct: 291 KSHPFFEGVD 300
>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine
Kinase, Never In Mitosis gene A-related kinase.
Serine/Threonine Kinases (STKs), Never In Mitosis gene A
(NIMA)-related kinase (Nek) family, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek family is
composed of 11 different mammalian members (Nek1-11)
with similarity to the catalytic domain of Aspergillus
nidulans NIMA kinase, the founding member of the Nek
family which was identified in a screen for cell cycle
mutants that were prevented from entering mitosis. Neks
contain a conserved N-terminal catalytic domain and a
more divergent C-terminal regulatory region of various
sizes and structures. They are involved in the
regulation of downstream processes following the
activation of Cdc2, and many of their functions are cell
cycle-related. They play critical roles in microtubule
dynamics during ciliogenesis and mitosis.
Length = 258
Score = 167 bits (425), Expect = 7e-47
Identities = 81/266 (30%), Positives = 128/266 (48%), Gaps = 22/266 (8%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKV-LREKMPNTIER-----DIMVKSKCPY 69
++I + I +G+FG +YLV K +V+K++ L E I+ K P
Sbjct: 1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPN 60
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQ--PHGYLSESKARFYIYELAQAVQYLH 127
I+ + SF++ + +MEY GGD ++ Q E + + +L A++YLH
Sbjct: 61 IIKYYESFEEKGKLCIVMEYADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLH 120
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWME 187
+HRDIKP N+ L++ G +KL DFG + + + V VGTP Y++PE+ +
Sbjct: 121 SRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTV-VGTPYYLSPELCQ--- 176
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRL 247
+ Y D+WS+G V YEL T PF E L IL P +
Sbjct: 177 ----NKPYNYKSDIWSLGCVLYELCTLKHPFEGENLLELALKILKGQYP-----PIPSQY 227
Query: 248 STAMVNFVQSLVQKL-DARLNMDQVL 272
S+ + N V SL+QK + R ++ Q+L
Sbjct: 228 SSELRNLVSSLLQKDPEERPSIAQIL 253
>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 2.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
LATS2 is an essential mitotic regulator responsible for
coordinating accurate cytokinesis completion and
governing the stabilization of other mitotic regulators.
It is also critical in the maintenance of proper
chromosome number, genomic stability, mitotic fidelity,
and the integrity of centrosome duplication.
Downregulation of LATS2 is associated with poor
prognosis in acute lymphoblastic leukemia and breast
cancer.
Length = 381
Score = 167 bits (425), Expect = 1e-45
Identities = 108/339 (31%), Positives = 159/339 (46%), Gaps = 69/339 (20%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKVLREKMPN-------TIERDIMVKSKCPYIVNLFYSFQ 78
G FG++ L + +H + MK + ++ + N ERDI+ ++ ++V L+YSFQ
Sbjct: 12 GAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQ 71
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
D +++YF+M+Y+ GGD ++LL E ARFYI EL A++ +H +G++HRDIKP
Sbjct: 72 DKDNLYFVMDYIPGGDMMSLLIRM--EVFPEVLARFYIAELTLAIESVHKMGFIHRDIKP 129
Query: 139 DNMLLSATGHLKLTDFGSAT-----------QVDKNGRIKSIVP---------------- 171
DN+L+ GH+KLTDFG T Q + R S+ P
Sbjct: 130 DNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVSNCRCGDRL 189
Query: 172 -------------------VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELL 212
VGTP Y+APEVL GYT CD WS+GV+ +E+L
Sbjct: 190 KTLEQRATKQHQRCLAHSLVGTPNYIAPEVLL-------RKGYTQLCDWWSVGVILFEML 242
Query: 213 TGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQKLDARL---NMD 269
G PF T T + + + E+T+ P ++LS V+ + L + RL D
Sbjct: 243 VGQPPFLAPT--PTETQLKVINWENTLHIPPQVKLSPEAVDLITKLCCSAEERLGRNGAD 300
Query: 270 QVLGHPVFDCLD--SDPPCIPPPSQENKFHKKDKRKASP 306
+ HP F +D SD P P H D P
Sbjct: 301 DIKAHPFFSEVDFSSDIRTQPAPYVPKISHPMDTSNFDP 339
>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase C. Serine/Threonine Kinases
(STKs), Protein Kinase C (PKC) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, classical PKCs depend on
calcium, DAG (1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. Novel PKCs are
calcium-independent, but require DAG and PS for
activity, while atypical PKCs only require PS. PKCs
phosphorylate and modify the activities of a wide
variety of cellular proteins including receptors,
enzymes, cytoskeletal proteins, transcription factors,
and other kinases. They play a central role in signal
transduction pathways that regulate cell migration and
polarity, proliferation, differentiation, and apoptosis.
Also included in this subfamily are the PKC-like
proteins, called PKNs.
Length = 318
Score = 161 bits (408), Expect = 7e-44
Identities = 92/291 (31%), Positives = 147/291 (50%), Gaps = 40/291 (13%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKM---------PNTIERDIMVKSKCPYIV 71
+ + +G+FG + L E K + + +K VL++ + T +R + + K P++
Sbjct: 1 KVLGKGSFGKVLLAELKGTDELYAVK-VLKKDVILQDDDVECTMTEKRVLALAGKHPFLT 59
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
L FQ + ++F+MEYV GGD + Q G E +ARFY E+ +Q+LH G
Sbjct: 60 QLHSCFQTKDRLFFVMEYVNGGDL--MFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGI 117
Query: 132 VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
++RD+K DN+LL + GH+K+ DFG + G + + GTP+Y+APE+L +
Sbjct: 118 IYRDLKLDNVLLDSEGHIKIADFGMCKEGILGG-VTTSTFCGTPDYIAPEILSYQP---- 172
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAM 251
Y + D W++GV+ YE+L G +PF + D + SIL ED V +P LS
Sbjct: 173 ---YGPAVDWWALGVLLYEMLAGQSPFEGDDEDELFQSIL----EDEVRYPRW--LSKEA 223
Query: 252 VNFVQSLVQK-LDARL-----NMDQVLGHPVFDCLDSD--------PPCIP 288
+ ++S + K + RL + GHP F +D D PP P
Sbjct: 224 KSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREIDWDKLERKEIKPPFKP 274
>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein
Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1.
Serine/Threonine Kinases (STKs), NDR kinase subfamily,
NDR1 isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The NDR
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. NDR kinase contains an N-terminal regulatory
(NTR) domain and an insert within the catalytic domain
that contains an auto-inhibitory sequence. Like many
other AGC kinases, NDR kinase requires phosphorylation
at two sites, the activation loop (A-loop) and the
hydrophobic motif (HM), for activity. Higher eukaryotes
contain two NDR isoforms, NDR1 and NDR2. Both isoforms
play a role in proper centrosome duplication. NDR1 is
highly expressed in thymus, muscle, lung and spleen. It
is not an essential protein because mice deficient of
NDR1 remain viable and fertile. However, these mice
develop T-cell lymphomas and appear to be hypersenstive
to carcinogenic treatment. NDR1 appears to act as a
tumor suppressor. NDR1 is also called STK38.
Length = 363
Score = 162 bits (410), Expect = 7e-44
Identities = 96/274 (35%), Positives = 146/274 (53%), Gaps = 52/274 (18%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT-------IERDIMVKSKCP 68
DF+ + I +G FG++ LV++K + + + MK + + M ERDI+V++
Sbjct: 2 DFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSL 61
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
++V +FYSFQD ++Y IME++ GGD +TLL + L+E + +FYI E A+ +H
Sbjct: 62 WVVKMFYSFQDKLNLYLIMEFLPGGDMMTLLMKK--DTLTEEETQFYIAETVLAIDSIHQ 119
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDK-------------------------- 162
LG++HRDIKPDN+LL + GH+KL+DFG T + K
Sbjct: 120 LGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSK 179
Query: 163 --------NGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTG 214
N R + VGTP+Y+APEV GY CD WS+GV+ YE+L G
Sbjct: 180 RKAETWKRNRRQLAFSTVGTPDYIAPEVFM-------QTGYNKLCDWWSLGVIMYEMLIG 232
Query: 215 STPFNYETLDMTYSSILACDTEDTVSFPSSIRLS 248
PF ET TY ++ + ++T+ FP + +S
Sbjct: 233 YPPFCSETPQETYKKVM--NWKETLIFPPEVPIS 264
>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases.
Protein Kinases (PKs), STE family, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The STE family is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases (STKs), protein
tyrosine kinases (PTKs), RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). This family is composed of STKs, and
some dual-specificity PKs that phosphorylate both
threonine and tyrosine residues of target proteins. Most
members are kinases involved in mitogen-activated
protein kinase (MAPK) signaling cascades, acting as MAPK
kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK
kinase kinase kinases (MAP4Ks). The MAPK signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAPK, which is
phosphorylated and activated by a MAPKK, which itself is
phosphorylated and activated by a MAPKKK. Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAPKKK to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. Other STE family members include
p21-activated kinases (PAKs) and class III myosins,
among others. PAKs are Rho family GTPase-regulated
kinases that serve as important mediators in the
function of Cdc42 (cell division cycle 42) and Rac.
Class III myosins are motor proteins containing an
N-terminal kinase catalytic domain and a C-terminal
actin-binding domain, which can phosphorylate several
cytoskeletal proteins, conventional myosin regulatory
light chains, as well as autophosphorylate the
C-terminal motor domain. They play an important role in
maintaining the structural integrity of photoreceptor
cell microvilli.
Length = 253
Score = 157 bits (400), Expect = 1e-43
Identities = 77/269 (28%), Positives = 130/269 (48%), Gaps = 26/269 (9%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMP--NTIERDIMVKSKC--PYIV 71
F+I I +G FG++Y K++ +K + E I +I + KC P IV
Sbjct: 1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIV 60
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
+ S+ + ++ +ME+ +GG LL++ L+ES+ + EL + ++YLH G
Sbjct: 61 KYYGSYLKKDELWIVMEFCSGGSLKDLLKSTNQT-LTESQIAYVCKELLKGLEYLHSNGI 119
Query: 132 VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
+HRDIK N+LL++ G +KL DFG + Q+ ++ VGTP ++APEV + G
Sbjct: 120 IHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTM--VGTPYWMAPEV---INGKP- 173
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPFNYET----LDMTYSSILACDTEDTVSFPSSIRL 247
Y D+WS+G+ + EL G P++ L T + +
Sbjct: 174 ---YDYKADIWSLGITAIELAEGKPPYSELPPMKALFKI-------ATNGPPGLRNPEKW 223
Query: 248 STAMVNFVQSLVQK-LDARLNMDQVLGHP 275
S +F++ +QK + R +Q+L HP
Sbjct: 224 SDEFKDFLKKCLQKNPEKRPTAEQLLKHP 252
>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family,
similar to 90 kDa ribosomal protein S6 kinases (RSKs).
MSKs are activated by two major signaling cascades, the
Ras-MAPK and p38 stress kinase pathways, in response to
various stimuli such as growth factors, hormones,
neurotransmitters, cellular stress, and pro-inflammatory
cytokines. This triggers phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) in the
C-terminal extension of NTD, which facilitates the
phosphorylation of the A-loop and activates the NTD,
which in turn phosphorylates downstream targets. MSKs
are predominantly nuclear proteins. They are widely
expressed in many tissues including heart, brain, lung,
liver, kidney, and pancreas. There are two isoforms of
MSK, called MSK1 and MSK2.
Length = 288
Score = 156 bits (395), Expect = 2e-42
Identities = 96/295 (32%), Positives = 158/295 (53%), Gaps = 30/295 (10%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNT---FVMKKVLR-----EKMPNT----IERDIMV 63
+F++ R + G +G ++LV + H+ + MK VL+ +K ER ++
Sbjct: 1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMK-VLKKATIVQKAKTAEHTRTERQVLE 59
Query: 64 K-SKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQA 122
+CP++V L Y+FQ ++ I++YV GG+ T L + + +ES+ R YI E+ A
Sbjct: 60 AVRRCPFLVTLHYAFQTDTKLHLILDYVNGGELFTHLYQR--EHFTESEVRVYIAEIVLA 117
Query: 123 VQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEV 182
+ +LH LG ++RDIK +N+LL + GH+ LTDFG + + ++ GT EY+APEV
Sbjct: 118 LDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEV 177
Query: 183 LEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFP 242
+ GS G+ + D WS+GV+++ELLTG++PF + + S I + FP
Sbjct: 178 I-----RGGSGGHDKAVDWWSLGVLTFELLTGASPFTVDGEQNSQSEISRRILKSKPPFP 232
Query: 243 SSIRLSTAMVNFVQSLVQK-LDARL---NMDQVLGHPVFDCLDSDPPC---IPPP 290
++ S +F+Q L++K RL D++ HP F +D D IP P
Sbjct: 233 KTM--SAEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGIDWDDLAAKRIPAP 285
>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of
cAMP-dependent protein kinase-like Protein
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), Fission yeast Suppressor of loss of
cAMP-dependent protein kinase (Sck1)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Sck1-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of fungal proteins
with similarity to the Schizosaccharomyces pombe STK
Sck1. Sck1 plays a role in trehalase activation
triggered by glucose and a nitrogen source. Trehalase
catalyzes the cleavage of the disaccharide trehalose to
glucose. Trehalose, as a carbohydrate reserve and stress
metabolite, plays an important role in the response of
yeast to environmental changes.
Length = 330
Score = 155 bits (392), Expect = 9e-42
Identities = 98/277 (35%), Positives = 150/277 (54%), Gaps = 31/277 (11%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKK------VLREKMPNTI-ERDIMVKS---KCPYIVN 72
I +G FG +Y V +K + + MK V ++++ +TI ER+I+V++ + P+IV
Sbjct: 1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVG 60
Query: 73 LFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYV 132
L +SFQ + +Y + +Y++GG+ L Q G SE +A+FYI EL A+++LH V
Sbjct: 61 LKFSFQTDSDLYLVTDYMSGGELFWHL--QKEGRFSEDRAKFYIAELVLALEHLHKYDIV 118
Query: 133 HRDIKPDNMLLSATGHLKLTDFG-SATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
+RD+KP+N+LL ATGH+ L DFG S + N + GT EY+APEVL
Sbjct: 119 YRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTF--CGTTEYLAPEVL------LD 170
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAM 251
GYT D WS+GV+ +E+ G +PF E Y +I V FP ++ LS
Sbjct: 171 EKGYTKHVDFWSLGVLVFEMCCGWSPFYAEDTQQMYRNI----AFGKVRFPKNV-LSDEG 225
Query: 252 VNFVQSLV-----QKLDARLNMDQVLGHPVFDCLDSD 283
FV+ L+ +L A + ++ HP F +D D
Sbjct: 226 RQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADIDWD 262
>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, 90 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 90 kDa
ribosomal protein S6 kinase (RSK) subfamily, N-terminal
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RSK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. RSKs contain an
N-terminal kinase domain (NTD) from the AGC family and a
C-terminal kinase domain (CTD) from the CAMK family.
They are activated by signaling inputs from
extracellular regulated kinase (ERK) and
phosphoinositide dependent kinase 1 (PDK1). ERK
phosphorylates and activates the CTD of RSK, serving as
a docking site for PDK1, which phosphorylates and
activates the NTD, which in turn phosphorylates all
known RSK substrates. RSKs act as downstream effectors
of mitogen-activated protein kinase (MAPK) and play key
roles in mitogen-activated cell growth, differentiation,
and survival. Mammals possess four RSK isoforms (RSK1-4)
from distinct genes. RSK proteins are also referred to
as MAP kinase-activated protein kinases (MAPKAPKs),
p90-RSKs, or p90S6Ks.
Length = 318
Score = 154 bits (391), Expect = 1e-41
Identities = 84/221 (38%), Positives = 128/221 (57%), Gaps = 21/221 (9%)
Query: 21 RFIQQGNFGDIYLVEEK------QSHNTFVMKKV---LREKMPNTIERDIMVKSKCPYIV 71
+ + QG+FG ++LV + Q + V+KK +R+++ +ERDI+ + P+IV
Sbjct: 2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIV 61
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
L Y+FQ +Y I++++ GGD T L + +E +FY+ ELA A+ +LH LG
Sbjct: 62 KLHYAFQTEGKLYLILDFLRGGDLFTRLSKEV--MFTEEDVKFYLAELALALDHLHSLGI 119
Query: 132 VHRDIKPDNMLLSATGHLKLTDFG-SATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNH 190
++RD+KP+N+LL GH+KLTDFG S +D + S GT EY+APEV+
Sbjct: 120 IYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSF--CGTVEYMAPEVVN------ 171
Query: 191 GSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSIL 231
G+T S D WS GV+ +E+LTGS PF + T + IL
Sbjct: 172 -RRGHTQSADWWSFGVLMFEMLTGSLPFQGKDRKETMTMIL 211
>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit;
Provisional.
Length = 329
Score = 152 bits (386), Expect = 6e-41
Identities = 81/225 (36%), Positives = 127/225 (56%), Gaps = 20/225 (8%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMK-----KVLREKMPNTI--ERDIMVKSKC 67
SDF++ + G+FG + + + K + + +K ++L+ K + E+ I+++
Sbjct: 18 SDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSH 77
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P+IVN+ SFQD N VYF++E+V GG+ T L G A+FY EL A +YLH
Sbjct: 78 PFIVNMMCSFQDENRVYFLLEFVVGGELFTHLRKA--GRFPNDVAKFYHAELVLAFEYLH 135
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWME 187
++RD+KP+N+LL GH+K+TDFG A +V ++ GTPEY+APEV++
Sbjct: 136 SKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKV----PDRTFTLCGTPEYLAPEVIQ--- 188
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILA 232
S G+ + D W++GV+ YE + G PF +T Y ILA
Sbjct: 189 ----SKGHGKAVDWWTMGVLLYEFIAGYPPFFDDTPFRIYEKILA 229
>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-Activated Protein
Kinase Kinase Kinase. Serine/threonine kinases (STKs),
mitogen-activated protein kinase (MAPK) kinase kinase
(MAPKKK) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called
MAP/ERK kinase kinases (MEKKs) in some cases. They
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
This subfamily is composed of the Apoptosis
Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or
MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant
and fungal MAPKKKs. Also included in this subfamily are
the cell division control proteins Schizosaccharomyces
pombe Cdc7 and Saccharomyces cerevisiae Cdc15.
Length = 260
Score = 150 bits (381), Expect = 6e-41
Identities = 63/208 (30%), Positives = 101/208 (48%), Gaps = 18/208 (8%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKV-LREKMPNTI-----ERDIMVKSKCPYIVNLF 74
+ +G+FG +YL +K + +K V L + E I+ + P IV +
Sbjct: 6 ELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYY 65
Query: 75 YSFQD--MNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYV 132
S +D N + +EYV+GG +LL+ L E R Y ++ + + YLH G V
Sbjct: 66 GSERDEEKNTLNIFLEYVSGGSLSSLLKKFGK--LPEPVIRKYTRQILEGLAYLHSNGIV 123
Query: 133 HRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIV-PVGTPEYVAPEVLEWMEGNHG 191
HRDIK N+L+ + G +KL DFG A ++ + GTP ++APEV+
Sbjct: 124 HRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIR------- 176
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPFN 219
+ Y + D+WS+G E+ TG P++
Sbjct: 177 GEEYGRAADIWSLGCTVIEMATGKPPWS 204
>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein
Serine/Threonine Kinase, Large Tumor Suppressor 1.
Serine/Threonine Kinases (STKs), Large Tumor Suppressor
(LATS) subfamily, LATS1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The LATS subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. LATS functions as a tumor
suppressor and is implicated in cell cycle regulation.
Inactivation of LATS1 in mice results in the development
of various tumors, including sarcomas and ovarian
cancer. Promoter methylation, loss of heterozygosity,
and missense mutations targeting the LATS1 gene have
also been found in human sarcomas and ovarian cancers.
In addition, decreased expression of LATS1 is associated
with an aggressive phenotype and poor prognosis. LATS1
induces G2 arrest and promotes cytokinesis. It may be a
component of the mitotic exit network in higher
eukaryotes.
Length = 382
Score = 154 bits (389), Expect = 8e-41
Identities = 107/340 (31%), Positives = 156/340 (45%), Gaps = 71/340 (20%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKVLREK---MPNTI-----ERDIMVKSKCPYIVNLFYSF 77
G FG++ L + + + MK LR+K + N + ERDI+ ++ ++V L+YSF
Sbjct: 12 GAFGEVCLARKVDTKALYAMK-TLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSF 70
Query: 78 QDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIK 137
QD +++YF+M+Y+ GGD ++LL G E ARFYI EL AV+ +H +G++HRDIK
Sbjct: 71 QDKDNLYFVMDYIPGGDMMSLLIRM--GIFPEDLARFYIAELTCAVESVHKMGFIHRDIK 128
Query: 138 PDNMLLSATGHLKLTDF--------------------------------GSATQVDKNGR 165
PDN+L+ GH+KLTDF G R
Sbjct: 129 PDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPANCRCGDR 188
Query: 166 IKSI--------------VPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYEL 211
+K + VGTP Y+APEVL GYT CD WS+GV+ YE+
Sbjct: 189 LKPLERRAARQHQRCLAHSLVGTPNYIAPEVLL-------RTGYTQLCDWWSVGVILYEM 241
Query: 212 LTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQKLDARL---NM 268
L G PF +T T ++ T ++ P +LS + + L + + RL
Sbjct: 242 LVGQPPFLAQTPLETQMKVINWQT--SLHIPPQAKLSPEASDLIIKLCRGPEDRLGKNGA 299
Query: 269 DQVLGHPVFDCLD--SDPPCIPPPSQENKFHKKDKRKASP 306
D++ HP F +D SD P H D P
Sbjct: 300 DEIKAHPFFKTIDFSSDLRQQSAPYIPKITHPTDTSNFDP 339
>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein
Serine/Threonine Kinases, Novel Protein Kinase C theta
and delta. Serine/Threonine Kinases (STKs), Novel
Protein Kinase C (nPKC), theta and delta-like isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The nPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
nPKCs are calcium-independent, but require DAG
(1,2-diacylglycerol) and phosphatidylserine (PS) for
activity. There are four nPKC isoforms, delta, epsilon,
eta, and theta. PKC-theta is selectively expressed in
T-cells and plays an important and non-redundant role in
several aspects of T-cell biology. PKC-delta plays a
role in cell cycle regulation and programmed cell death
in many cell types.
Length = 316
Score = 150 bits (381), Expect = 3e-40
Identities = 98/309 (31%), Positives = 155/309 (50%), Gaps = 38/309 (12%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLREKM-------PNTIERDIM-VKSKCPYIVNLFYS 76
+G+FG + L E K ++ F +K + ++ + +ER ++ + + P++ +LF +
Sbjct: 5 KGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCT 64
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDI 136
FQ H++F+MEY+ GGD + Q G E++ARFY E+ +Q+LH G ++RD+
Sbjct: 65 FQTKEHLFFVMEYLNGGDL--MFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDL 122
Query: 137 KPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYT 196
K DN+LL GH+K+ DFG + + NG K+ GTP+Y+APE+L+ + Y
Sbjct: 123 KLDNVLLDKDGHIKIADFGMCKE-NMNGEGKASTFCGTPDYIAPEILKGQK-------YN 174
Query: 197 GSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQ 256
S D WS GV+ YE+L G +PF+ E D + SIL D FP I +
Sbjct: 175 ESVDWWSFGVLLYEMLIGQSPFHGEDEDELFDSIL----NDRPHFPRWISKEAKDC-LSK 229
Query: 257 SLVQKLDARLNMD-QVLGHPVFDCLD--------SDPPCIP---PPSQENKFHK---KDK 301
+ RL +D + HP F +D PP P PS + F + +K
Sbjct: 230 LFERDPTKRLGVDGDIRQHPFFRGIDWERLEKREIPPPFKPKVKSPSDASNFDREFTNEK 289
Query: 302 RKASPSLKA 310
+ SP K
Sbjct: 290 VRLSPVDKK 298
>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine
Kinase, Serum- and Glucocorticoid-induced Kinase.
Serine/Threonine Kinases (STKs), Serum- and
Glucocorticoid-induced Kinase (SGK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SGK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
isoforms of SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGKs are
activated by insulin and growth factors via
phosphoinositide 3-kinase and PDK1. They activate ion
channels, ion carriers, and the Na-K-ATPase, as well as
regulate the activity of enzymes and transcription
factors. SGKs play important roles in transport, hormone
release, neuroexcitability, cell proliferation, and
apoptosis.
Length = 323
Score = 150 bits (380), Expect = 4e-40
Identities = 94/301 (31%), Positives = 152/301 (50%), Gaps = 34/301 (11%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMK-----KVLREKMPNTI--ERDIMVKS-KCPYIVNLF 74
I +G+FG + L + K + +K +L++K I ER++++K+ K P++V L
Sbjct: 3 IGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLH 62
Query: 75 YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
YSFQ + +YF+++YV GG+ L+ + E +ARFY E+A A+ YLH L ++R
Sbjct: 63 YSFQTADKLYFVLDYVNGGELFFHLQRERS--FPEPRARFYAAEIASALGYLHSLNIIYR 120
Query: 135 DIKPDNMLLSATGHLKLTDFGSATQ-VDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSD 193
D+KP+N+LL + GH+ LTDFG + ++ + + GTPEY+APEVL
Sbjct: 121 DLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTF--CGTPEYLAPEVLRKQP------ 172
Query: 194 GYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVN 253
Y + D W +G V YE+L G PF Y +IL + +I +S +
Sbjct: 173 -YDRTVDWWCLGAVLYEMLYGLPPFYSRDTAEMYDNIL----NKPLRLKPNISVSAR--H 225
Query: 254 FVQSLVQK-----LDARLNMDQVLGHPVFDCLDSDPPC---IPPPSQENKFHKKDKRKAS 305
++ L+QK L A+ + ++ H F ++ D I PP N D +
Sbjct: 226 LLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSINWDDLVNKKITPPFNPNVSGPMDLKHFD 285
Query: 306 P 306
P
Sbjct: 286 P 286
>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control
protein 7-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), (Cdc7)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Cdc7-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily include
Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae
Cdc15, Arabidopsis thaliana mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK) epsilon, and
related proteins. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Fission yeast Cdc7
is essential for cell division by playing a key role in
the initiation of septum formation and cytokinesis.
Budding yeast Cdc15 functions to coordinate mitotic exit
with cytokinesis. Arabidopsis MAPKKK epsilon is required
for pollen development in the plasma membrane.
Length = 254
Score = 146 bits (371), Expect = 2e-39
Identities = 81/268 (30%), Positives = 133/268 (49%), Gaps = 24/268 (8%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMP----NTI--ERDIMVKSKCPY 69
++ + I +G FG +Y ++ + +K++ EK+ +I E D++ K P
Sbjct: 1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
IV S + + +Y I+EY G ++ + G ES Y+Y++ Q + YLH
Sbjct: 61 IVKYIGSIETSDSLYIILEYAENGSLRQII--KKFGPFPESLVAVYVYQVLQGLAYLHEQ 118
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGN 189
G +HRDIK N+L + G +KL DFG AT+++ + VGTP ++APEV+E
Sbjct: 119 GVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSK-DDASVVGTPYWMAPEVIE----- 172
Query: 190 HGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLST 249
G + + D+WS+G ELLTG+ P+ Y+ M +++ +D P I S
Sbjct: 173 --MSGASTASDIWSLGCTVIELLTGNPPY-YDLNPM--AALFRIVQDDHPPLPEGI--SP 225
Query: 250 AMVNFVQSLVQKLDARLNMD--QVLGHP 275
+ +F+ QK D L Q+L HP
Sbjct: 226 ELKDFLMQCFQK-DPNLRPTAKQLLKHP 252
>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase N. Serine/Threonine Kinases
(STKs), Protein Kinase N (PKN) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKN subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKN has a
C-terminal catalytic domain that is highly homologous to
PKCs. Its unique N-terminal regulatory region contains
antiparallel coiled-coil (ACC) domains. In mammals,
there are three PKN isoforms from different genes
(designated PKN-alpha, beta, and gamma), which show
different enzymatic properties, tissue distribution, and
varied functions. PKN can be activated by the small
GTPase Rho, and by fatty acids such as arachidonic and
linoleic acids. It is involved in many biological
processes including cytokeletal regulation, cell
adhesion, vesicle transport, glucose transport,
regulation of meiotic maturation and embryonic cell
cycles, signaling to the nucleus, and tumorigenesis.
Length = 324
Score = 146 bits (371), Expect = 8e-39
Identities = 91/291 (31%), Positives = 140/291 (48%), Gaps = 47/291 (16%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDIMVKSKC-------------PYIV 71
+G+FG + L E K++ + +K L K + I RD + C P++V
Sbjct: 9 RGHFGKVLLAEYKKTGELYAIK-AL--KKGDIIARDEVESLMCEKRIFETANSERHPFLV 65
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
NLF FQ +HV F+MEY GGD + + SE +A FY + +QYLH
Sbjct: 66 NLFACFQTEDHVCFVMEYAAGGDLMMHIHT---DVFSEPRAVFYAACVVLGLQYLHENKI 122
Query: 132 VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
V+RD+K DN+LL G +K+ DFG + G S GTPE++APEVL
Sbjct: 123 VYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTF-CGTPEFLAPEVLT------- 174
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAM 251
YT + D W +GV+ YE+L G +PF + + + SI+ D V +P LS
Sbjct: 175 ETSYTRAVDWWGLGVLIYEMLVGESPFPGDDEEEVFDSIV----NDEVRYP--RFLSREA 228
Query: 252 VNFVQSLVQKL-DARL-----NMDQVLGHPVFDCLDSD--------PPCIP 288
++ ++ L+++ + RL + + V P F ++ D PP +P
Sbjct: 229 ISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDINWDDLLARKIKPPFVP 279
>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 2. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK2 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more
restricted distribution that SGK1 and is most abundantly
expressed in epithelial tissues including kidney, liver,
pancreas, and the choroid plexus of the brain. In vitro
cellular assays show that SGK2 can stimulate the
activity of ion channels, the glutamate transporter
EEAT4, and the glutamate receptors, GluR6 and GLUR1.
Length = 321
Score = 145 bits (368), Expect = 2e-38
Identities = 97/303 (32%), Positives = 151/303 (49%), Gaps = 34/303 (11%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMK-----KVLREKMPNTI--ERDIMVKS-KCPYIVN 72
+ I +G+FG + L + K + + +K +L++K N I ER++++K+ K P++V
Sbjct: 1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVG 60
Query: 73 LFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYV 132
L YSFQ +YF+++YV GG+ L Q E +ARFY E+A A+ YLH L +
Sbjct: 61 LHYSFQTAEKLYFVLDYVNGGELFFHL--QRERCFLEPRARFYAAEVASAIGYLHSLNII 118
Query: 133 HRDIKPDNMLLSATGHLKLTDFGSATQ-VDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
+RD+KP+N+LL + GH+ LTDFG + V+ + GTPEY+APEVL
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTF--CGTPEYLAPEVLR------- 169
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAM 251
+ Y + D W +G V YE+L G PF + Y +IL + P + A
Sbjct: 170 KEPYDRTVDWWCLGAVLYEMLYGLPPFYSRDVSQMYDNIL----HKPLQLPGG--KTVAA 223
Query: 252 VNFVQSLVQK-----LDARLNMDQVLGHPVFDCLDSDP---PCIPPPSQENKFHKKDKRK 303
+ + L+ K L A+ + ++ H F ++ D I PP N D R
Sbjct: 224 CDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSPINWDDLYHKRITPPYNPNVAGPADLRH 283
Query: 304 ASP 306
P
Sbjct: 284 FDP 286
>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase
1-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Yeast protein kinase 1
(YPK1)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The YPK1-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
fungal proteins with similarity to the AGC STKs,
Saccharomyces cerevisiae YPK1 and Schizosaccharomyces
pombe Gad8p. YPK1 is required for cell growth and acts
as a downstream kinase in the sphingolipid-mediated
signaling pathway of yeast. It also plays a role in
efficient endocytosis and in the maintenance of cell
wall integrity. Gad8p is a downstream target of Tor1p,
the fission yeast homolog of mTOR. It plays a role in
cell growth and sexual development.
Length = 312
Score = 144 bits (364), Expect = 3e-38
Identities = 89/288 (30%), Positives = 143/288 (49%), Gaps = 31/288 (10%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKK------VLREKMPNTI-ERDIMVKSKCPYIVNLFY 75
I +G+FG + V ++ + + +K V R ++ +T+ ER ++ + CP+IV L +
Sbjct: 1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKF 60
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
SFQ +Y ++ ++ GG+ L Q G S+ARFY EL A++ LH ++RD
Sbjct: 61 SFQSPEKLYLVLAFINGGELFHHL--QREGRFDLSRARFYTAELLCALENLHKFNVIYRD 118
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
+KP+N+LL GH+ L DFG +++ K+ GTPEY+APE+L GY
Sbjct: 119 LKPENILLDYQGHIALCDFG-LCKLNMKDDDKTNTFCGTPEYLAPELLL-------GHGY 170
Query: 196 TGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFV 255
T + D W++GV+ YE+LTG PF E ++ Y IL ++ + FP A +
Sbjct: 171 TKAVDWWTLGVLLYEMLTGLPPFYDENVNEMYRKIL----QEPLRFPDGFD-RDAKDLLI 225
Query: 256 QSLVQKLDARLNM---DQVLGHPVFDCLDSDPPC----IPP--PSQEN 294
L + RL ++ HP F L PP P+ +
Sbjct: 226 GLLSRDPTRRLGYNGAQEIKNHPFFSQLSWKKLLMKGIQPPFKPAVSS 273
>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C eta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), eta isoform, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta
is predominantly expressed in squamous epithelia, where
it plays a crucial role in the signaling of cell-type
specific differentiation. It is also expressed in pro-B
cells and early-stage thymocytes, and acts as a key
regulator in early B-cell development. PKC-eta increases
glioblastoma multiforme (GBM) proliferation and
resistance to radiation, and is being developed as a
therapeutic target for the management of GBM.
Length = 320
Score = 144 bits (364), Expect = 5e-38
Identities = 92/278 (33%), Positives = 146/278 (52%), Gaps = 31/278 (11%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTF---VMKK--VLRE---KMPNTIERDIMVKSKCPYIVN 72
R + +G+FG + L K+S + V+KK +L++ + T +R + + P++
Sbjct: 1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQ 60
Query: 73 LFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYV 132
L+ FQ + ++F+ME+V GGD + Q E++ARFY E+ A+ +LH G +
Sbjct: 61 LYCCFQTPDRLFFVMEFVNGGDL--MFHIQKSRRFDEARARFYAAEITSALMFLHDKGII 118
Query: 133 HRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGS 192
+RD+K DN+LL GH KL DFG + NG+ S GTP+Y+APE+L+ M
Sbjct: 119 YRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTF-CGTPDYIAPEILQEML----- 172
Query: 193 DGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMV 252
Y S D W++GV+ YE+L G PF E D + +IL D V +P+ LS V
Sbjct: 173 --YGPSVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAIL----NDEVVYPT--WLSQDAV 224
Query: 253 NFVQSLVQKLDA-RLNM------DQVLGHPVFDCLDSD 283
+ +++ + K RL + +L HP F LD +
Sbjct: 225 DILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKELDWE 262
>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein
Serine/Threonine Kinase, 70 kDa ribosomal protein S6
kinase. Serine/Threonine Kinases (STKs), 70 kDa
ribosomal protein S6 kinase (p70S6K) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The p70S6K subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. p70S6K (or S6K)
contains only one catalytic kinase domain, unlike p90
ribosomal S6 kinases (RSKs). It acts as a downstream
effector of the STK mTOR (mammalian Target of Rapamycin)
and plays a role in the regulation of the translation
machinery during protein synthesis. p70S6K also plays a
pivotal role in regulating cell size and glucose
homeostasis. Its targets include S6, the translation
initiation factor eIF3, and the insulin receptor
substrate IRS-1, among others. Mammals contain two
isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta).
Length = 323
Score = 143 bits (363), Expect = 8e-38
Identities = 88/266 (33%), Positives = 135/266 (50%), Gaps = 34/266 (12%)
Query: 20 KRFIQQGNFGDIYLVEEKQSHNT---FVMKKVLREKM---------PNTIERDIMVKSKC 67
+ + +G +G ++ V + +T F MK VL++ ER+I+ K
Sbjct: 1 LKVLGKGGYGKVFQVRKVTGADTGKIFAMK-VLKKATIVRNQKDTAHTKAERNILEAVKH 59
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P+IV+L Y+FQ +Y I+EY++GG+ LE + G E A FY+ E++ A+++LH
Sbjct: 60 PFIVDLIYAFQTGGKLYLILEYLSGGELFMHLERE--GIFMEDTACFYLSEISLALEHLH 117
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWME 187
G ++RD+KP+N+LL A GH+KLTDFG + G + GT EY+APE+L M
Sbjct: 118 QQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTF-CGTIEYMAPEIL--MR 174
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRL 247
HG D WS+G + Y++LTG+ PF E T IL + L
Sbjct: 175 SGHGKA-----VDWWSLGALMYDMLTGAPPFTAENRKKTIDKILKG----------KLNL 219
Query: 248 STAMVNFVQSLVQKLDARLNMDQVLG 273
+ + L++KL R N LG
Sbjct: 220 PPYLTPEARDLLKKLLKR-NPSSRLG 244
>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function
prediction only / Signal transduction mechanisms /
Transcription / DNA replication, recombination, and
repair].
Length = 384
Score = 145 bits (365), Expect = 9e-38
Identities = 94/367 (25%), Positives = 150/367 (40%), Gaps = 34/367 (9%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKM-----PNTIERDIMVKSKC--- 67
+ I R + +G+FG++YL +++ +K + ++ R+I + +
Sbjct: 1 SYRILRKLGEGSFGEVYLARDRK---LVALKVLAKKLESKSKEVERFLREIQILASLNHP 57
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQP-HGYLSESKARFYIYELAQAVQYL 126
P IV L+ FQD +Y +MEYV GG LL+ G LSES+A F + ++ A++YL
Sbjct: 58 PNIVKLYDFFQDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYL 117
Query: 127 HGLGYVHRDIKPDNMLLSATGH-LKLTDFGSATQVDKNG-----RIKSIVPVGTPEYVAP 180
H G +HRDIKP+N+LL G +KL DFG A + G VGTP Y+AP
Sbjct: 118 HSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAP 177
Query: 181 EVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYS---SILACDTED 237
EVL + + + S D+WS+G+ YELLTG PF E S I+
Sbjct: 178 EVLLGLSLAY----ASSSSDIWSLGITLYELLTGLPPFEGEKNSSATSQTLKIILELPTP 233
Query: 238 TVSFPSSIRLSTAMVNFVQSLVQKL-----DARLNMDQVLGHPVFDCLDSDPPCIPPPSQ 292
+++ P S + L++KL RL+ L H + L
Sbjct: 234 SLASPLSPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHLKL----KESDLS 289
Query: 293 ENKFHKKDKRKASPSLKAFQKEGRYLDSALPLIGISYTGEPMGANTNTSSDSTLPPSSED 352
+ + + L+S + + + + P +
Sbjct: 290 DLLKPDDSAPLRLSLPPSLEALISSLNSLAISGSDLKLDDSNFSKELAPNGVSSSPHNSS 349
Query: 353 MRHWKRD 359
Sbjct: 350 SLLLSTA 356
>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C epsilon.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), epsilon isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta.
PKC-epsilon has been shown to behave as an oncoprotein.
Its overexpression contributes to neoplastic
transformation depending on the cell type. It
contributes to oncogenesis by inducing disordered cell
growth and inhibiting cell death. It also plays a role
in tumor invasion and metastasis. PKC-epsilon has also
been found to confer cardioprotection against ischemia
and reperfusion-mediated damage. Other cellular
functions include the regulation of gene expression,
cell adhesion, and cell motility.
Length = 321
Score = 143 bits (361), Expect = 1e-37
Identities = 89/276 (32%), Positives = 142/276 (51%), Gaps = 34/276 (12%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLREKM---------PNTIERDIMVKSKCPYIVNLFY 75
+G+FG + L E K + + +K VL++ + T +R + + +K P++ L
Sbjct: 5 KGSFGKVMLAELKGTDEVYAIK-VLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHC 63
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
FQ + ++F+MEYV GGD + + Q E ++RFY E+ A+ +LH G ++RD
Sbjct: 64 CFQTKDRLFFVMEYVNGGDL--MFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRD 121
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
+K DN+LL A GH KL DFG + NG + GTP+Y+APE+L+ +E Y
Sbjct: 122 LKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTF-CGTPDYIAPEILQELE-------Y 173
Query: 196 TGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFV 255
S D W++GV+ YE++ G PF + D + SIL D V +P + LS V+ +
Sbjct: 174 GPSVDWWALGVLMYEMMAGQPPFEADNEDDLFESIL----HDDVLYP--VWLSKEAVSIL 227
Query: 256 QSLVQKLDA-RLNM-------DQVLGHPVFDCLDSD 283
++ + K RL D + HP F +D
Sbjct: 228 KAFMTKNPNKRLGCVASQGGEDAIKQHPFFKEIDWV 263
>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 3. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK3 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3 (also called
cytokine-independent survival kinase CISK). SGK3 is
expressed in most tissues and is most abundant in the
embryo and adult heart and spleen. It was originally
discovered in a screen for antiapoptotic genes. It
phosphorylates and inhibits the proapoptotic proteins,
Bad and FKHRL1. SGK3 also regulates many transporters,
ion channels, and receptors. It plays a critical role in
hair follicle morphogenesis and hair cycling.
Length = 325
Score = 142 bits (360), Expect = 2e-37
Identities = 96/306 (31%), Positives = 150/306 (49%), Gaps = 40/306 (13%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMK----KVL---REKMPNTIERDIMVKS-KCPYIVN 72
+ I +G+FG + L + K + +K K++ +E+ ER++++K+ K P++V
Sbjct: 1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVG 60
Query: 73 LFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYV 132
L YSFQ +YF++++V GG+ L Q E +ARFY E+A A+ YLH + V
Sbjct: 61 LHYSFQTTEKLYFVLDFVNGGELFFHL--QRERSFPEPRARFYAAEIASALGYLHSINIV 118
Query: 133 HRDIKPDNMLLSATGHLKLTDFG----SATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEG 188
+RD+KP+N+LL + GH+ LTDFG Q D GTPEY+APEV+
Sbjct: 119 YRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTF-----CGTPEYLAPEVIR---- 169
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLS 248
Y + D W +G V YE+L G PF + Y +IL + V P + S
Sbjct: 170 ---KQPYDNTVDWWCLGAVLYEMLYGLPPFYCRDVAEMYDNILH---KPLVLRPGA---S 220
Query: 249 TAMVNFVQSLVQK-----LDARLNMDQVLGHPVFDCL---DSDPPCIPPPSQENKFHKKD 300
+ ++ L++K L A+ + ++ HP F+ L D + IPPP N D
Sbjct: 221 LTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESLSWTDLEQKKIPPPFNPNVEGPDD 280
Query: 301 KRKASP 306
Sbjct: 281 ISNFDA 286
>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C.
Serine/Threonine Kinases (STKs), Classical (or
Conventional) Protein Kinase C (cPKC) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. cPKCs contain a
calcium-binding C2 region in their regulatory domain.
There are four cPKC isoforms, named alpha, betaI,
betaII, and gamma. cPKCs are potent kinases for
histones, myelin basic protein, and protamine. PKC-gamma
is mainly expressed in neuronal tissues. It plays a role
in protection from ischemia.
Length = 324
Score = 142 bits (359), Expect = 3e-37
Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 36/264 (13%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTF---VMKK-----------VLREKMPNTIERDI 61
DF+ + +G+FG + L E K + + ++KK + EK R +
Sbjct: 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEK------RVL 54
Query: 62 MVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQ 121
+ K P++ L FQ M+ +YF+MEYV GGD + Q G E A FY E+A
Sbjct: 55 ALPGKPPFLTQLHSCFQTMDRLYFVMEYVNGGDL--MYHIQQVGKFKEPHAVFYAAEIAI 112
Query: 122 AVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPE 181
+ +LH G ++RD+K DN++L A GH+K+ DFG + + G + GTP+Y+APE
Sbjct: 113 GLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKE-NIFGGKTTRTFCGTPDYIAPE 171
Query: 182 VLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSF 241
++ + Y S D W+ GV+ YE+L G PF+ E D + SI E VS+
Sbjct: 172 IIAYQP-------YGKSVDWWAFGVLLYEMLAGQPPFDGEDEDELFQSI----MEHNVSY 220
Query: 242 PSSIRLSTAMVNFVQSLVQKLDAR 265
P S LS V+ + L+ K A+
Sbjct: 221 PKS--LSKEAVSICKGLLTKHPAK 242
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 146 bits (370), Expect = 2e-36
Identities = 73/175 (41%), Positives = 102/175 (58%), Gaps = 10/175 (5%)
Query: 13 SASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT-------IERDIMVKS 65
S +F I + I +G FG +YL +K + + +K V + M N ERD + S
Sbjct: 2 SIEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALS 61
Query: 66 KCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQY 125
K P+IV+L+YS Q N+VY +MEY+ GGD +LL +GY E A YI E+A A+ Y
Sbjct: 62 KSPFIVHLYYSLQSANNVYLVMEYLIGGDVKSLL--HIYGYFDEEMAVKYISEVALALDY 119
Query: 126 LHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAP 180
LH G +HRD+KPDNML+S GH+KLTDFG ++V N + + + TP P
Sbjct: 120 LHRHGIIHRDLKPDNMLISNEGHIKLTDFG-LSKVTLNRELNMMDILTTPSMAKP 173
Score = 59.1 bits (143), Expect = 7e-09
Identities = 45/145 (31%), Positives = 68/145 (46%), Gaps = 25/145 (17%)
Query: 157 ATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGST 216
A V+ RI +GTP+Y+APE+L + HG + D W++GV +E LTG
Sbjct: 532 AAPVE-GERI-----LGTPDYLAPELL--LGKPHGP-----AVDWWALGVCLFEFLTGIP 578
Query: 217 PFNYETLDMTYSSILACDTEDTVSFPS-SIRLSTAMVNFVQSLVQKLDA-RLNMDQVLGH 274
PFN ET + +IL D +P +LS N ++ L+ R + ++ H
Sbjct: 579 PFNDETPQQVFQNILNRDIP----WPEGEEKLSVNAQNAIEILLTMDPTKRAGLKELKQH 634
Query: 275 PVFDCLDSD------PPCIPPPSQE 293
P+F +D + P IP P E
Sbjct: 635 PLFHGVDWENLQNQTMPFIPQPDDE 659
>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine
Kinase, Protein Kinase B. Serine/Threonine Kinases
(STKs), Protein Kinase B (PKB) or Akt subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). There are
three PKB isoforms from different genes, PKB-alpha (or
Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. It is activated
downstream of PI3K and plays important roles in diverse
cellular functions including cell survival, growth,
proliferation, angiogenesis, motility, and migration.
PKB also has a central role in a variety of human
cancers, having been implicated in tumor initiation,
progression, and metastasis.
Length = 323
Score = 139 bits (351), Expect = 3e-36
Identities = 88/294 (29%), Positives = 145/294 (49%), Gaps = 32/294 (10%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKK------VLREKMPNTI-ERDIMVKSKCPYIVNLFYSF 77
+G FG + LV EK + + MK + ++++ +T+ E ++ ++ P++ L YSF
Sbjct: 5 KGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSF 64
Query: 78 QDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIK 137
Q + + F+MEY GG+ L + SE +ARFY E+ A+ YLH V+RD+K
Sbjct: 65 QTHDRLCFVMEYANGGELFFHLSRE--RVFSEDRARFYGAEIVSALGYLHSCDVVYRDLK 122
Query: 138 PDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTG 197
+N++L GH+K+TDFG + +G GTPEY+APEVLE + Y
Sbjct: 123 LENLMLDKDGHIKITDFGLCKEGISDGATMKTF-CGTPEYLAPEVLE-------DNDYGR 174
Query: 198 SCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQS 257
+ D W +GVV YE++ G PF + + + IL + + FP LS + +
Sbjct: 175 AVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEE----IRFPR--TLSPEAKSLLAG 228
Query: 258 LVQK-LDARL-----NMDQVLGHPVFDCL---DSDPPCIPPPSQENKFHKKDKR 302
L++K RL + +++ H F + D + PP + + D R
Sbjct: 229 LLKKDPKQRLGGGPEDAKEIMEHRFFASINWQDVVQKKLEPPFKPQVTSETDTR 282
>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein
Serine/Threonine Kinase, Serum- and
Glucocorticoid-induced Kinase 1. Serine/Threonine
Kinases (STKs), Serum- and Glucocorticoid-induced Kinase
(SGK) subfamily, SGK1 isoform, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The SGK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. There are three isoforms of
SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously
expressed and is under transcriptional control of
numerous stimuli including cell stress (cell shrinkage),
serum, hormones (gluco- and mineralocorticoids),
gonadotropins, growth factors, interleukin-6, and other
cytokines. It plays roles in sodium retention and
potassium elimination in the kidney, nutrient transport,
salt sensitivity, memory consolidation, and cardiac
repolarization. A common SGK1 variant is associated with
increased blood pressure and body weight. SGK1 may also
contribute to tumor growth, neurodegeneration, fibrosing
disease, and ischemia.
Length = 325
Score = 137 bits (347), Expect = 1e-35
Identities = 105/347 (30%), Positives = 167/347 (48%), Gaps = 55/347 (15%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMK-----KVLREKMPNTI--ERDIMVKS-KCPYIVN 72
+ I +G+FG + L K + +K +L++K I ER++++K+ K P++V
Sbjct: 1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVG 60
Query: 73 LFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYV 132
L +SFQ + +YF+++Y+ GG+ L+ + +L E +ARFY E+A A+ YLH L V
Sbjct: 61 LHFSFQTADKLYFVLDYINGGELFYHLQRE-RCFL-EPRARFYAAEIASALGYLHSLNIV 118
Query: 133 HRDIKPDNMLLSATGHLKLTDFGSATQ-VDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
+RD+KP+N+LL + GH+ LTDFG + ++ NG + GTPEY+APEVL
Sbjct: 119 YRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTF--CGTPEYLAPEVLH------- 169
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAM 251
Y + D W +G V YE+L G PF Y +IL + + +S R
Sbjct: 170 KQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQLKPNITNSAR----- 224
Query: 252 VNFVQSLVQK-----LDARLNMDQVLGHPVFDCLDSDP---PCIPPPSQENKFHKKDKRK 303
+ ++ L+QK L A+ + ++ H F ++ D I PP N D R
Sbjct: 225 -HLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSPINWDDLINKKITPPFNPNVSGPNDLRH 283
Query: 304 ASPSLKAFQKEGRYLDSALPLIGISYTGEPMGANTNTSSDSTLPPSS 350
P +T EP+ + S DS L +S
Sbjct: 284 FDP---------------------EFTEEPVPNSIGQSPDSILVTAS 309
>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
beta. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, beta isoforms,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
The PKC beta isoforms (I and II), generated by
alternative splicing of a single gene, are
preferentially activated by hyperglycemia-induced DAG in
retinal tissues. This is implicated in diabetic
microangiopathy such as ischemia, neovascularization,
and abnormal vasodilator function. PKC-beta also plays
an important role in VEGF signaling. In addition,
glucose regulates proliferation in retinal endothelial
cells via PKC-betaI. PKC-beta is also being explored as
a therapeutic target in cancer. It contributes to tumor
formation and is involved in the tumor host mechanisms
of inflammation and angiogenesis.
Length = 323
Score = 136 bits (343), Expect = 3e-35
Identities = 90/302 (29%), Positives = 147/302 (48%), Gaps = 40/302 (13%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMP--------NTIERDIMVKS-K 66
DF+ + +G+FG + L E K + + +K +L++ + +E+ ++ S K
Sbjct: 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIK-ILKKDVVIQDDDVECTMVEKRVLALSGK 59
Query: 67 CPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYL 126
P++ L FQ M+ +YF+MEYV GGD + + Q G E A FY E+A + +L
Sbjct: 60 PPFLTQLHSCFQTMDRLYFVMEYVNGGDL--MYQIQQVGRFKEPHAVFYAAEIAIGLFFL 117
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWM 186
H G ++RD+K DN++L + GH+K+ DFG + +G + + GTP+Y+APE++ +
Sbjct: 118 HSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDG-VTTKTFCGTPDYIAPEIIAYQ 176
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIR 246
Y S D W+ GV+ YE+L G PF E D + SI+ E V++P S
Sbjct: 177 P-------YGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIM----EHNVAYPKS-- 223
Query: 247 LSTAMVNFVQSLVQKLDA-RLNMD-----QVLGHPVFDCLDSD--------PPCIPPPSQ 292
+S V + L+ K RL + H F +D + PP P
Sbjct: 224 MSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYIDWEKLERKEVQPPYKPKACG 283
Query: 293 EN 294
+
Sbjct: 284 RD 285
>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 2. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK2,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK2 and MSK1 play nonredundant
roles in activating histone H3 kinases, which play
pivotal roles in compaction of the chromatin fiber. MSK2
is the required H3 kinase in response to stress stimuli
and activation of the p38 MAPK pathway. MSK2 also plays
a role in the pathogenesis of psoriasis.
Length = 332
Score = 135 bits (340), Expect = 8e-35
Identities = 91/289 (31%), Positives = 153/289 (52%), Gaps = 38/289 (13%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNT---FVMKKVLRE----KMPNTIERDIMVKS--- 65
+F++ + + G +G ++LV + H+T + MK VL++ + T+E ++
Sbjct: 1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMK-VLQKAALVQKAKTVEHTRTERNVLE 59
Query: 66 ---KCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQA 122
+ P++V L Y+FQ ++ I++YV+GG+ T L + + SE + RFY E+ A
Sbjct: 60 HVRQSPFLVTLHYAFQTEAKLHLILDYVSGGEMFTHLYQRDN--FSEDEVRFYSGEIILA 117
Query: 123 VQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEV 182
+++LH LG V+RDIK +N+LL + GH+ LTDFG + + + ++ GT EY+APE+
Sbjct: 118 LEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEI 177
Query: 183 LEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSS----ILACDTEDT 238
+ G G+ + D WS+G++ +ELLTG++PF E T S IL CD
Sbjct: 178 IR------GKGGHGKAVDWWSLGILIFELLTGASPFTLEGERNTQSEVSRRILKCDP--- 228
Query: 239 VSFPSSIRLSTAMVNFVQSLVQK-LDARL-----NMDQVLGHPVFDCLD 281
FPS + + + L++K RL ++ HP F LD
Sbjct: 229 -PFPS--FIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGLD 274
>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like
protein kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), mammalian Ste20-like
protein kinase 3 (MST3)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST3, MST4,
STK25, Schizosaccharomyces pombe Nak1 and Sid1,
Saccharomyces cerevisiae sporulation-specific protein 1
(SPS1), and related proteins. Nak1 is required by
fission yeast for polarizing the tips of actin
cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Sid1 is a component in the septation initiation network
(SIN) signaling pathway, and plays a role in
cytokinesis. SPS1 plays a role in regulating proteins
required for spore wall formation. MST4 plays a role in
mitogen-activated protein kinase (MAPK) signaling during
cytoskeletal rearrangement, morphogenesis, and
apoptosis. MST3 phosphorylates the STK NDR and may play
a role in cell cycle progression and cell morphology.
STK25 may play a role in the regulation of cell
migration and polarization.
Length = 274
Score = 133 bits (336), Expect = 1e-34
Identities = 70/208 (33%), Positives = 111/208 (53%), Gaps = 16/208 (7%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE---RDIMVKSKC--PY 69
F + I +G+FG++Y +K+++ +K + E+ + IE ++I S+C PY
Sbjct: 1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPY 60
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
I + SF + ++ IMEY GG + LL+ L E+ F + E+ ++YLH
Sbjct: 61 ITKYYGSFLKGSKLWIIMEYCGGGSCLDLLKPGK---LDETYIAFILREVLLGLEYLHEE 117
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGN 189
G +HRDIK N+LLS G +KL DFG + Q+ + K VGTP ++APEV+ +
Sbjct: 118 GKIHRDIKAANILLSEEGDVKLADFGVSGQL-TSTMSKRNTFVGTPFWMAPEVI--KQS- 173
Query: 190 HGSDGYTGSCDLWSIGVVSYELLTGSTP 217
GY D+WS+G+ + EL G P
Sbjct: 174 ----GYDEKADIWSLGITAIELAKGEPP 197
>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Classical Protein Kinase C
alpha. Serine/Threonine Kinases (STKs), Classical
Protein Kinase C (cPKC) subfamily, alpha isoform,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The cPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
PKCs undergo three phosphorylations in order to take
mature forms. In addition, cPKCs depend on calcium, DAG
(1,2-diacylglycerol), and in most cases,
phosphatidylserine (PS) for activation. There are four
cPKC isoforms, named alpha, betaI, betaII, and gamma.
PKC-alpha is expressed in many tissues and is associated
with cell proliferation, apoptosis, and cell motility.
It plays a role in the signaling of the growth factors
PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha
have been detected in many transformed cell lines and
several human tumors. In addition, PKC-alpha is required
for HER2 dependent breast cancer invasion.
Length = 323
Score = 133 bits (336), Expect = 3e-34
Identities = 81/258 (31%), Positives = 140/258 (54%), Gaps = 24/258 (9%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKM--PNTIE------RDIMVKSKC 67
DF+ + +G+FG + L E K + + +K + ++ + + +E R + ++ K
Sbjct: 1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKP 60
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P++ L FQ ++ +YF+MEYV GGD + + Q G E +A FY E++ + +LH
Sbjct: 61 PFLTQLHSCFQTVDRLYFVMEYVNGGDLMYHI--QQVGKFKEPQAVFYAAEISVGLFFLH 118
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWME 187
G ++RD+K DN++L + GH+K+ DFG + +G + + GTP+Y+APE++ +
Sbjct: 119 RRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDG-VTTRTFCGTPDYIAPEIIAYQP 177
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRL 247
Y S D W+ GV+ YE+L G PF+ E D + SI+ E VS+P S L
Sbjct: 178 -------YGKSVDWWAYGVLLYEMLAGQPPFDGEDEDELFQSIM----EHNVSYPKS--L 224
Query: 248 STAMVNFVQSLVQKLDAR 265
S V+ + L+ K ++
Sbjct: 225 SKEAVSICKGLMTKHPSK 242
>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2,
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii Never In Mitosis gene A
(NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii CNK2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes CNK1, and -2. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii CNK2 has both
cilliary and cell cycle functions. It influences
flagellar length through promoting flagellar
disassembly, and it regulates cell size, through
influencing the size threshold at which cells commit to
mitosis.
Length = 256
Score = 131 bits (330), Expect = 4e-34
Identities = 74/271 (27%), Positives = 126/271 (46%), Gaps = 28/271 (10%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKV-LR-----EKMPNTIERDIMVKSKCPY 69
DF + + + +G++G +Y V+ + + +K+V L E+ E I+ P
Sbjct: 1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPN 60
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLEN-QPHGYLSESKA--RFYIYELAQAVQYL 126
I++ +F D N + +MEY GD + + L + R +I +L + +Q L
Sbjct: 61 IISYKEAFLDGNKLCIVMEYAPFGDLSKAISKRKKKRKLIPEQEIWRIFI-QLLRGLQAL 119
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWM 186
H +HRD+K N+LL A +K+ D G + V K K+ +GTP Y+APEV W
Sbjct: 120 HEQKILHRDLKSANILLVANDLVKIGDLGISK-VLKKNMAKTQ--IGTPHYMAPEV--WK 174
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPS-SI 245
Y+ D+WS+G + YE+ T + PF ++ + +P
Sbjct: 175 -----GRPYSYKSDIWSLGCLLYEMATFAPPFEARSMQDLRYKVQ------RGKYPPIPP 223
Query: 246 RLSTAMVNFVQSLVQ-KLDARLNMDQVLGHP 275
S + NF++S++Q K R N D++L P
Sbjct: 224 IYSQDLQNFIRSMLQVKPKLRPNCDKILASP 254
>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 4.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4
(MEKK4) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK4 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK4 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK4 activates the c-Jun
N-terminal kinase (JNK) and p38 MAPK signaling pathways
by directly activating their respective MAPKKs,
MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively
known as stress-activated MAPKs, as they are activated
in response to a variety of environmental stresses and
pro-inflammatory cytokines. MEKK4 also plays roles in
the re-polarization of the actin cytoskeleton in
response to osmotic stress, in the proper closure of the
neural tube, in cardiovascular development, and in
immune responses.
Length = 264
Score = 131 bits (331), Expect = 4e-34
Identities = 81/269 (30%), Positives = 118/269 (43%), Gaps = 26/269 (9%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKV----LREKMPNTIERDIMVKS--KCPYIVNLF 74
I G FG +Y + +K++ K I ++ V K P +V +
Sbjct: 6 NKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVK-Y 64
Query: 75 YSFQ-DMNHVYFIMEYVTGGDFVTLLENQPHGY-LSESKARFYIYELAQAVQYLHGLGYV 132
Y + VY MEY +GG LLE HG L E R Y +L + + YLH G V
Sbjct: 65 YGVEVHREKVYIFMEYCSGGTLEELLE---HGRILDEHVIRVYTLQLLEGLAYLHSHGIV 121
Query: 133 HRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP-----VGTPEYVAPEVLEWME 187
HRDIKP N+ L G +KL DFG A ++ N ++ GTP Y+APEV+
Sbjct: 122 HRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTT--TMGEEVQSLAGTPAYMAPEVIT--- 176
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRL 247
G+ + D+WS+G V E+ TG P+ LD + + P S++L
Sbjct: 177 -GGKGKGHGRAADIWSLGCVVLEMATGKRPW--SELDNEFQIMFHVGAGHKPPIPDSLQL 233
Query: 248 STAMVNFV-QSLVQKLDARLNMDQVLGHP 275
S +F+ + L R ++L HP
Sbjct: 234 SPEGKDFLDRCLESDPKKRPTASELLQHP 262
>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine
Kinase, G protein-coupled Receptor Kinase.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The GRK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. GRKs phosphorylate and
regulate G protein-coupled receptors (GPCRs), the
largest superfamily of cell surface receptors, which
regulate some part of nearly all physiological
functions. Phosphorylated GPCRs bind to arrestins, which
prevents further G protein signaling despite the
presence of activating ligand. GRKs contain a central
catalytic domain, flanked by N- and C-terminal
extensions. The N-terminus contains an RGS (regulator of
G protein signaling) homology (RH) domain and several
motifs. The C-terminus diverges among different groups
of GRKs. There are seven types of GRKs, named GRK1 to
GRK7. They are subdivided into three main groups: visual
(GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and
GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is
widespread while GRK1/4/7 show a limited tissue
distribution. The substrate spectrum of the widely
expressed GRKs partially overlaps. GRKs play important
roles in the cardiovascular, immune, respiratory,
skeletal, and nervous systems.
Length = 277
Score = 131 bits (331), Expect = 5e-34
Identities = 76/288 (26%), Positives = 140/288 (48%), Gaps = 32/288 (11%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT-------IERDIMVKSKCPYIVNLFY 75
+ +G FG++ + K + + KK+ ++++ E+ I+ K +IV+L Y
Sbjct: 1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAY 60
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
+F+ + + +M + GGD + N E++A FY ++ +++LH V+RD
Sbjct: 61 AFETKDDLCLVMTLMNGGDLKYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRD 120
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
+KP+N+LL G+++++D G A ++ +IK GTP Y+APEVL+ Y
Sbjct: 121 LKPENVLLDDHGNVRISDLGLAVELKGGKKIKG--RAGTPGYMAPEVLQGEV-------Y 171
Query: 196 TGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFV 255
S D +++G YE++ G +PF + + E V +P + S +
Sbjct: 172 DFSVDWFALGCTLYEMIAGRSPFRQRKEKVEKEELKRRTLEMAVEYPD--KFSPEAKDLC 229
Query: 256 QSLVQK-LDARL-----NMDQVLGHPVFDCLD--------SDPPCIPP 289
++L+QK + RL + D+V HP+F L+ +PP IP
Sbjct: 230 EALLQKDPEKRLGCRGGSADEVREHPLFKDLNWRRLEAGMLEPPFIPD 277
>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine
Kinase, p21-activated kinase. Serine/threonine kinases
(STKs), p21-activated kinase (PAK) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PAK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PAKs are Rho
family GTPase-regulated kinases that serve as important
mediators in the function of Cdc42 (cell division cycle
42) and Rac. PAKs are implicated in the regulation of
many cellular processes including growth factor
receptor-mediated proliferation, cell polarity, cell
motility, cell death and survival, and actin
cytoskeleton organization. PAK deregulation is
associated with tumor development. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs contain a PBD (p21-binding domain)
overlapping with an AID (autoinhibitory domain), a
C-terminal catalytic domain, SH3 binding sites and a
non-classical SH3 binding site for PIX (PAK-interacting
exchange factor). Group II PAKs contain a PBD and a
catalytic domain, but lack other motifs found in group I
PAKs. Since group II PAKs do not contain an obvious AID,
they may be regulated differently from group I PAKs.
Group I PAKs interact with the SH3 containing proteins
Nck, Grb2 and PIX; no such binding has been demonstrated
for group II PAKs.
Length = 286
Score = 131 bits (331), Expect = 7e-34
Identities = 65/200 (32%), Positives = 108/200 (54%), Gaps = 14/200 (7%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKV-LREKMPNTI--ERDIMVKSKCPYIVNLFYSFQD 79
I +G G++Y ++ + +KK+ LR++ I E IM K P IV+ + S+
Sbjct: 27 IGEGASGEVYKATDRATGKEVAIKKMRLRKQNKELIINEILIMKDCKHPNIVDYYDSYLV 86
Query: 80 MNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPD 139
+ ++ +MEY+ GG ++ ++E + + E+ Q ++YLH +HRDIK D
Sbjct: 87 GDELWVVMEYMDGGSLTDIITQNFV-RMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSD 145
Query: 140 NMLLSATGHLKLTDFGSATQVDKN-GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGS 198
N+LLS G +KL DFG A Q+ K + S+ VGTP ++APEV++ D Y
Sbjct: 146 NILLSKDGSVKLADFGFAAQLTKEKSKRNSV--VGTPYWMAPEVIK------RKD-YGPK 196
Query: 199 CDLWSIGVVSYELLTGSTPF 218
D+WS+G++ E+ G P+
Sbjct: 197 VDIWSLGIMCIEMAEGEPPY 216
>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant
dual-specificity MAP kinase kinases and similar
proteins. Protein kinases (PKs), MAP kinase kinase
(MAPKK) subfamily, Plant MAPKKs and similar proteins,
catalytic (c) domain. PKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine or
tyrosine residues on protein substrates. The MAPKK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein serine/threonine
kinases, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The mitogen-activated protein
(MAP) kinase signaling pathways are important mediators
of cellular responses to extracellular signals. The
pathways involve a triple kinase core cascade comprising
of the MAP kinase (MAPK), which is phosphorylated and
activated by a MAPK kinase (MAPKK or MKK), which itself
is phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). Members of this group include MAPKKs
from plants, kinetoplastids, alveolates, and mycetozoa.
The MAPKK, LmxPK4, from Leishmania mexicana, is
important in differentiation and virulence.
Dictyostelium discoideum MEK1 is required for proper
chemotaxis. MEK1 null mutants display severe defects in
cell polarization and directional movement. Plants
contain multiple MAPKKs like other eukaryotes. The
Arabidopsis genome encodes for 10 MAPKKs while poplar
and rice contain 13 MAPKKs each. The functions of these
proteins have not been fully elucidated. There is
evidence to suggest that MAPK cascades are involved in
plant stress responses. In Arabidopsis, MKK3 plays a
role in pathogen signaling, MKK2 is involved in cold and
salt stress signaling, MKK4/MKK5 participates in innate
immunity, and MKK7 regulates basal and systemic acquired
resistance.
Length = 264
Score = 129 bits (327), Expect = 1e-33
Identities = 66/270 (24%), Positives = 127/270 (47%), Gaps = 22/270 (8%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKV---LREKMPNTIERD--IMVKSKCPY 69
SD + + + QG+ G +Y V K + + +KK+ E+ + R+ + + PY
Sbjct: 1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPY 60
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG- 128
+V + +F + ++EY+ GG LL + G + E + ++ + + YLH
Sbjct: 61 VVKCYGAFYKEGEISIVLEYMDGGSLADLL--KKVGKIPEPVLAYIARQILKGLDYLHTK 118
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEG 188
+HRDIKP N+L+++ G +K+ DFG + ++ N + VGT Y++PE ++
Sbjct: 119 RHIIHRDIKPSNLLINSKGEVKIADFGISKVLE-NTLDQCNTFVGTVTYMSPERIQ---- 173
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILA--CDTEDTVSFPSSIR 246
+ Y+ + D+WS+G+ E G PF ++ ++ CD +
Sbjct: 174 ---GESYSYAADIWSLGLTLLECALGKFPFL-PPGQPSFFELMQAICDGP--PPSLPAEE 227
Query: 247 LSTAMVNFVQSLVQKL-DARLNMDQVLGHP 275
S +F+ + +QK R + ++L HP
Sbjct: 228 FSPEFRDFISACLQKDPKKRPSAAELLQHP 257
>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C.
Serine/Threonine Kinases (STKs), Atypical Protein Kinase
C (aPKC) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
aPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. aPKCs only require
phosphatidylserine (PS) for activation. They contain a
C2-like region, instead of a calcium-binding (C2) region
found in classical PKCs, in their regulatory domain.
There are two aPKC isoforms, zeta and iota. aPKCs are
involved in many cellular functions including
proliferation, migration, apoptosis, polarity
maintenance and cytoskeletal regulation. They also play
a critical role in the regulation of glucose metabolism
and in the pathogenesis of type 2 diabetes.
Length = 329
Score = 129 bits (327), Expect = 5e-33
Identities = 86/287 (29%), Positives = 144/287 (50%), Gaps = 40/287 (13%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDI----------MVKSKCPYI 70
R I +G++ + LVE K++ + MK + +E + + DI S P++
Sbjct: 1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELV--NDDEDIDWVQTEKHVFETASNHPFL 58
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
V L FQ + ++F++E+V+GGD + ++ Q L E ARFY E++ A+ +LH G
Sbjct: 59 VGLHSCFQTESRLFFVIEFVSGGDLMFHMQRQRK--LPEEHARFYSAEISLALNFLHERG 116
Query: 131 YVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNH 190
++RD+K DN+LL A GH+KLTD+G + + G S GTP Y+APE+L
Sbjct: 117 IIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTF-CGTPNYIAPEILR------ 169
Query: 191 GSDGYTGSCDLWSIGVVSYELLTGSTPFNY---------ETLDMTYSSILACDTEDTVSF 241
+ Y S D W++GV+ +E++ G +PF+ T D + IL E +
Sbjct: 170 -GEDYGFSVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQVIL----EKQIRI 224
Query: 242 PS--SIRLSTAMVNFV-QSLVQKLDARLN--MDQVLGHPVFDCLDSD 283
P S++ S+ + F+ + ++L + HP F +D D
Sbjct: 225 PRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRNIDWD 271
>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C delta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), delta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta
plays a role in cell cycle regulation and programmed
cell death in many cell types. It slows down cell
proliferation, inducing cell cycle arrest and enhancing
cell differentiation. PKC-delta is also involved in the
regulation of transcription as well as immune and
inflammatory responses. It plays a central role in the
genotoxic stress response that leads to DNA
damaged-induced apoptosis.
Length = 316
Score = 129 bits (325), Expect = 6e-33
Identities = 91/324 (28%), Positives = 159/324 (49%), Gaps = 46/324 (14%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDI---MVKSKC-------PYI 70
+ + +G+FG + L E K F +K + ++ + I+ D+ MV+ + P++
Sbjct: 1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVV--LIDDDVECTMVEKRVLALAWENPFL 58
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
+L+ +FQ H++F+ME++ GGD + Q G +A FY E+ +Q+LH G
Sbjct: 59 THLYCTFQTKEHLFFVMEFLNGGDL--MFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKG 116
Query: 131 YVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNH 190
++RD+K DN++L GH+K+ DFG + + G ++ GTP+Y+APE+L+ ++
Sbjct: 117 IIYRDLKLDNVMLDRDGHIKIADFGMCKE-NVFGDNRASTFCGTPDYIAPEILQGLK--- 172
Query: 191 GSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTA 250
YT S D WS GV+ YE+L G +PF+ + D + SI DT +P I +
Sbjct: 173 ----YTFSVDWWSFGVLLYEMLIGQSPFHGDDEDELFESI----RVDTPHYPRWITKES- 223
Query: 251 MVNFVQSLVQKL-----DARLNM-DQVLGHPVFDCLD--------SDPPCIPPPSQENKF 296
+ +++KL RL + + GHP F ++ DPP P + +
Sbjct: 224 -----KDILEKLFERDPTRRLGVVGNIRGHPFFKTINWTALEKRELDPPFKPKVKSPSDY 278
Query: 297 HKKDKRKASPSLKAFQKEGRYLDS 320
D+ S + + +DS
Sbjct: 279 SNFDREFLSEKPRLSYSDKNLIDS 302
>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine
Kinase, Cell Cycle-Related Kinase. Serine/Threonine
Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CCRK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CCRK was previously called p42. It is a
Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK)
which is essential for the activation of CDK2. It is
indispensable for cell growth and has been implicated in
the progression of glioblastoma multiforme. In the
heart, a splice variant of CCRK with a different
C-terminal half is expressed, this variant promotes
cardiac cell growth and survival and is significantly
down-regulated during the development of heart failure.
Length = 286
Score = 127 bits (322), Expect = 1e-32
Identities = 66/206 (32%), Positives = 103/206 (50%), Gaps = 14/206 (6%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKV----LREKMPNTIERDIMV--KSKCPYIVNLFYS 76
I +G G ++ +++++ T +KKV L +PN R+I + PY+V L
Sbjct: 8 IGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDV 67
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDI 136
F + +MEY+ D +L ++ L E++ + Y+ L + V Y+H G +HRD+
Sbjct: 68 FPHGSGFVLVMEYM-PSDLSEVLRDEERP-LPEAQVKSYMRMLLKGVAYMHANGIMHRDL 125
Query: 137 KPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYT 196
KP N+L+SA G LK+ DFG A + V T Y APE+L +G+ Y
Sbjct: 126 KPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELL------YGARKYD 179
Query: 197 GSCDLWSIGVVSYELLTGSTPFNYET 222
DLW++G + ELL GS F E
Sbjct: 180 PGVDLWAVGCIFAELLNGSPLFPGEN 205
>gnl|CDD|173616 PTZ00426, PTZ00426, cAMP-dependent protein kinase catalytic
subunit; Provisional.
Length = 340
Score = 128 bits (322), Expect = 2e-32
Identities = 82/250 (32%), Positives = 127/250 (50%), Gaps = 26/250 (10%)
Query: 2 DVVKELRQKN-VSASDFDIKRFIQQGNFGDIYLVEEKQSH------NTFVMKKVLREKMP 54
D KE ++KN + DF+ R + G+FG + L K F K++++K
Sbjct: 16 DSTKEPKRKNKMKYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQV 75
Query: 55 NTI--ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKA 112
+ + ER I+ P+ VNL+ SF+D +++Y ++E+V GG+F T L
Sbjct: 76 DHVFSERKILNYINHPFCVNLYGSFKDESYLYLVLEFVIGGEFFTFLRRNKR--FPNDVG 133
Query: 113 RFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPV 172
FY ++ +YL L V+RD+KP+N+LL G +K+TDFG A VD ++
Sbjct: 134 CFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT----RTYTLC 189
Query: 173 GTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILA 232
GTPEY+APE+L + HG + D W++G+ YE+L G PF + Y IL
Sbjct: 190 GTPEYIAPEIL--LNVGHGK-----AADWWTLGIFIYEILVGCPPFYANEPLLIYQKIL- 241
Query: 233 CDTEDTVSFP 242
E + FP
Sbjct: 242 ---EGIIYFP 248
>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B beta.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, beta (or Akt2) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-beta is the
predominant PKB isoform expressed in insulin-responsive
tissues. It plays a critical role in the regulation of
glucose homeostasis. It is also implicated in muscle
cell differentiation. Mice deficient in PKB-beta display
normal growth weights but exhibit severe insulin
resistance and diabetes, accompanied by lipoatrophy and
B-cell failure.
Length = 323
Score = 127 bits (321), Expect = 3e-32
Identities = 79/248 (31%), Positives = 132/248 (53%), Gaps = 23/248 (9%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLRE------KMPNTI-ERDIMVKSKCPYIVNL 73
+ + +G FG + LV EK + + MK + +E ++ +T+ E ++ ++ P++ L
Sbjct: 1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTAL 60
Query: 74 FYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVH 133
Y+FQ + + F+MEY GG+ L + +E +ARFY E+ A++YLH V+
Sbjct: 61 KYAFQTHDRLCFVMEYANGGELFFHLSRER--VFTEERARFYGAEIVSALEYLHSRDVVY 118
Query: 134 RDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSD 193
RDIK +N++L GH+K+TDFG + +G GTPEY+APEVLE +
Sbjct: 119 RDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTF-CGTPEYLAPEVLE-------DN 170
Query: 194 GYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVN 253
Y + D W +GVV YE++ G PF + + + IL + + FP + LS +
Sbjct: 171 DYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILM----EEIRFPRT--LSPEAKS 224
Query: 254 FVQSLVQK 261
+ L++K
Sbjct: 225 LLAGLLKK 232
>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C iota.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, iota isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-iota is directly implicated in carcinogenesis. It is
critical to oncogenic signaling mediated by Ras and
Bcr-Abl. The PKC-iota gene is the target of
tumor-specific gene amplification in many human cancers,
and has been identified as a human oncogene. In addition
to its role in transformed growth, PKC-iota also
promotes invasion, chemoresistance, and tumor cell
survival. Expression profiling of PKC-iota is a
prognostic marker of poor clinical outcome in several
human cancers. PKC-iota also plays a role in
establishing cell polarity, and has critical embryonic
functions.
Length = 329
Score = 127 bits (321), Expect = 3e-32
Identities = 97/305 (31%), Positives = 150/305 (49%), Gaps = 48/305 (15%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDIMVKSKC--------PYIVN 72
R I +G++ + LV K++ + MK V +E + + + D + K P++V
Sbjct: 1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVG 60
Query: 73 LFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYV 132
L FQ + ++F++EYV GGD + ++ Q L E ARFY E++ A+ YLH G +
Sbjct: 61 LHSCFQTESRLFFVIEYVNGGDLMFHMQRQRK--LPEEHARFYSAEISLALNYLHERGII 118
Query: 133 HRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGS 192
+RD+K DN+LL + GH+KLTD+G + + G S GTP Y+APE+L G
Sbjct: 119 YRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTF-CGTPNYIAPEILR------GE 171
Query: 193 DGYTGSCDLWSIGVVSYELLTGSTPFNY---------ETLDMTYSSILACDTEDTVSFPS 243
D Y S D W++GV+ +E++ G +PF+ T D + IL E + P
Sbjct: 172 D-YGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL----EKQIRIPR 226
Query: 244 SIRLSTAMVNFVQSLVQK-LDARL------NMDQVLGHPVFDCLDSD--------PPCIP 288
S+ + A V ++S + K RL + GHP F +D D PP P
Sbjct: 227 SLSVKAASV--LKSFLNKDPKERLGCHPQTGFADIQGHPFFRNVDWDLMEQKQVVPPFKP 284
Query: 289 PPSQE 293
S E
Sbjct: 285 NISGE 289
>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein
Serine/Threonine Kinase, Novel Protein Kinase C theta.
Serine/Threonine Kinases (STKs), Novel Protein Kinase C
(nPKC), theta isoform, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The nPKC subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PKCs are classified into three groups
(classical, atypical, and novel) depending on their mode
of activation and the structural characteristics of
their regulatory domain. nPKCs are calcium-independent,
but require DAG (1,2-diacylglycerol) and
phosphatidylserine (PS) for activity. There are four
nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta
is selectively expressed in T-cells and plays an
important and non-redundant role in several aspects of
T-cell biology. Although T-cells also express other PKC
isoforms, PKC-theta is unique in that upon antigen
stimulation, it is translocated to the plasma membrane
at the immunological synapse, where it mediates signals
essential for T-cell activation. It is essential for
TCR-induced proliferation, cytokine production, T-cell
survival, and the differentiation and effector function
of T-helper (Th) cells, particularly Th2 and Th17.
PKC-theta is being developed as a therapeutic target for
Th2-mediated allergic inflammation and Th17-mediated
autoimmune diseases.
Length = 316
Score = 126 bits (318), Expect = 6e-32
Identities = 86/300 (28%), Positives = 147/300 (49%), Gaps = 36/300 (12%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREK--MPNTIE------RDIMVKSKCPYIVN 72
+ + +G+FG ++L E K ++ F +K + ++ M + +E R + + + P++ +
Sbjct: 1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTH 60
Query: 73 LFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYV 132
L+ +FQ +++F+MEY+ GGD + Q +A FY E+ +Q+LH G V
Sbjct: 61 LYCTFQTKENLFFVMEYLNGGDL--MFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIV 118
Query: 133 HRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGS 192
+RD+K DN+LL GH+K+ DFG + + G K+ GTP+Y+APE+L + N
Sbjct: 119 YRDLKLDNILLDTDGHIKIADFGMCKE-NMLGDAKTCTFCGTPDYIAPEILLGQKYNT-- 175
Query: 193 DGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTA-- 250
S D WS GV+ YE+L G +PF+ + + SI D +P +
Sbjct: 176 -----SVDWWSFGVLLYEMLIGQSPFHGHDEEELFQSI----RMDNPCYPRWLTREAKDI 226
Query: 251 -MVNFVQSLVQKLDARLNMDQVLGHPVFDCLD--------SDPPCIPPPSQENKFHKKDK 301
+ FV+ ++L + ++ Q HP F +D +PP P N DK
Sbjct: 227 LVKLFVREPERRLGVKGDIRQ---HPFFREIDWSALEEREIEPPFKPKVKSANDCSNFDK 283
>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein
Serine/Threonine Kinases, Mammalian Ste20-like protein
kinase 1 and 2. Serine/threonine kinases (STKs),
mammalian Ste20-like protein kinase 1 (MST1) and MST2
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MST1/2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of MST1, MST2, and
related proteins including Drosophila Hippo and
Dictyostelium discoideum Krs1 (kinase responsive to
stress 1). MST1/2 and Hippo are involved in a conserved
pathway that governs cell contact inhibition, organ size
control, and tumor development. MST1 activates the
mitogen-activated protein kinases (MAPKs) p38 and c-Jun
N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and
MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase
kinase kinase (MAPKKKK). Activation of JNK by MST1 leads
to caspase activation and apoptosis. MST1 has also been
implicated in cell proliferation and differentiation.
Krs1 may regulate cell growth arrest and apoptosis in
response to cellular stress.
Length = 256
Score = 123 bits (312), Expect = 1e-31
Identities = 60/209 (28%), Positives = 104/209 (49%), Gaps = 19/209 (9%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIER--DIMVKSKCPYIVNL 73
FDI + +G++G +Y K++ +K V E+ I + I+ + PYIV
Sbjct: 4 VFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEEDLQEIIKEISILKQCDSPYIVKY 63
Query: 74 FYSFQDMNHVYFIMEYVTGG---DFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
+ S+ ++ +MEY G D + + L+E + +Y+ + ++YLH
Sbjct: 64 YGSYFKNTDLWIVMEYCGAGSVSDIMKITNKT----LTEEEIAAILYQTLKGLEYLHSNK 119
Query: 131 YVHRDIKPDNMLLSATGHLKLTDFGSATQ-VDKNGRIKSIVPVGTPEYVAPEVLEWMEGN 189
+HRDIK N+LL+ G KL DFG + Q D + ++ +GTP ++APEV++
Sbjct: 120 KIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTV--IGTPFWMAPEVIQ----- 172
Query: 190 HGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
GY D+WS+G+ + E+ G P+
Sbjct: 173 --EIGYNNKADIWSLGITAIEMAEGKPPY 199
>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B gamma.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, gamma (or Akt3) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-gamma is
predominantly expressed in neuronal tissues. Mice
deficient in PKB-gamma show a reduction in brain weight
due to the decreases in cell size and cell number.
PKB-gamma has also been shown to be upregulated in
estrogen-deficient breast cancer cells,
androgen-independent prostate cancer cells, and primary
ovarian tumors. It acts as a key mediator in the genesis
of ovarian cancer.
Length = 328
Score = 125 bits (315), Expect = 2e-31
Identities = 78/233 (33%), Positives = 127/233 (54%), Gaps = 23/233 (9%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLRE------KMPNTI-ERDIMVKSKCPYIVNL 73
+ + +G FG + LV EK S + MK + +E ++ +T+ E ++ ++ P++ +L
Sbjct: 1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSL 60
Query: 74 FYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVH 133
YSFQ + + F+MEYV GG+ L + SE + RFY E+ A+ YLH V+
Sbjct: 61 KYSFQTKDRLCFVMEYVNGGELFFHLSRER--VFSEDRTRFYGAEIVSALDYLHSGKIVY 118
Query: 134 RDIKPDNMLLSATGHLKLTDFGSATQ-VDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGS 192
RD+K +N++L GH+K+TDFG + + +K+ GTPEY+APEVLE
Sbjct: 119 RDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTF--CGTPEYLAPEVLE-------D 169
Query: 193 DGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSI 245
+ Y + D W +GVV YE++ G PF + + + IL D + FP ++
Sbjct: 170 NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMED----IKFPRTL 218
>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein
Serine/Threonine Kinase, Protein Kinase B alpha.
Serine/Threonine Kinases (STKs), Protein Kinase B (PKB)
or Akt subfamily, alpha (or Akt1) isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The PKB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. There are three
PKB isoforms from different genes, PKB-alpha (or Akt1),
PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB
contains an N-terminal pleckstrin homology (PH) domain
and a C-terminal catalytic domain. PKB-alpha is
predominantly expressed in endothelial cells. It is
critical for the regulation of angiogenesis and the
maintenance of vascular integrity. It also plays a role
in adipocyte differentiation. Mice deficient in
PKB-alpha exhibit perinatal morbidity, growth
retardation, reduction in body weight accompanied by
reduced sizes of multiple organs, and enhanced apoptosis
in some cell types. PKB-alpha activity has been reported
to be frequently elevated in breast and prostate
cancers. In some cancer cells, PKB-alpha may act as a
suppressor of metastasis.
Length = 325
Score = 124 bits (313), Expect = 3e-31
Identities = 78/233 (33%), Positives = 126/233 (54%), Gaps = 22/233 (9%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKK------VLREKMPNTI-ERDIMVKSKCPYIVNL 73
+ + +G FG + LV+EK + + MK V ++++ +T+ E ++ S+ P++ L
Sbjct: 1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTAL 60
Query: 74 FYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG-LGYV 132
YSFQ + + F+MEY GG+ L + SE +ARFY E+ A+ YLH V
Sbjct: 61 KYSFQTHDRLCFVMEYANGGELFFHLSRER--VFSEDRARFYGAEIVSALDYLHSEKNVV 118
Query: 133 HRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGS 192
+RD+K +N++L GH+K+TDFG + K+G GTPEY+APEVLE
Sbjct: 119 YRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTF-CGTPEYLAPEVLE-------D 170
Query: 193 DGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSI 245
+ Y + D W +GVV YE++ G PF + + + IL + + FP ++
Sbjct: 171 NDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEE----IRFPRTL 219
>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen and stress-activated
kinase 1. Serine/Threonine Kinases (STKs), Mitogen and
stress-activated kinase (MSK) subfamily, MSK1,
N-terminal catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MSK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MSKs contain an N-terminal kinase domain (NTD)
from the AGC family and a C-terminal kinase domain (CTD)
from the CAMK family, similar to 90 kDa ribosomal
protein S6 kinases (RSKs). MSKs are activated by two
major signaling cascades, the Ras-MAPK and p38 stress
kinase pathways, which trigger phosphorylation in the
activation loop (A-loop) of the CTD of MSK. The active
CTD phosphorylates the hydrophobic motif (HM) of NTD,
which facilitates the phosphorylation of the A-loop and
activates the NTD, which in turn phosphorylates
downstream targets. MSK1 plays a role in the regulation
of translational control and transcriptional activation.
It phosphorylates the transcription factors, CREB and
NFkappaB. It also phosphorylates the nucleosomal
proteins H3 and HMG-14. Increased phosphorylation of
MEK1 is associated with the development of cerebral
ischemic/hypoxic preconditioning.
Length = 290
Score = 120 bits (303), Expect = 3e-30
Identities = 84/288 (29%), Positives = 149/288 (51%), Gaps = 31/288 (10%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNT--FVMKKVLR-----EKMPNT----IERDIMVK 64
+F++ + + G +G ++LV + H++ KVL+ +K T ER ++
Sbjct: 1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEH 60
Query: 65 -SKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAV 123
+ P++V L Y+FQ ++ I++Y+ GG+ T L + E + + Y E+ A+
Sbjct: 61 IRQSPFLVTLHYAFQTDTKLHLILDYINGGELFTHLSQRER--FKEQEVQIYSGEIVLAL 118
Query: 124 QYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQ--VDKNGRIKSIVPVGTPEYVAPE 181
++LH LG ++RDIK +N+LL + GH+ LTDFG + + D+ R S GT EY+AP+
Sbjct: 119 EHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSF--CGTIEYMAPD 176
Query: 182 VLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSF 241
++ G G+ + D WS+GV+ YELLTG++PF + + + I + +
Sbjct: 177 IVR-----GGDGGHDKAVDWWSMGVLMYELLTGASPFTVDGEKNSQAEISRRILKSEPPY 231
Query: 242 PSSIRLSTAMVNFVQSLVQK-LDARL-----NMDQVLGHPVFDCLDSD 283
P +S + +Q L+ K RL + D++ HP F ++ D
Sbjct: 232 PQE--MSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKINWD 277
>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated
protein kinase kinase kinase kinase-like Protein
Serine/Threonine Kinases. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily includes MAP4K3, MAP4K1,
MAP4K2, MAP4K5, and related proteins. Vertebrate members
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain, similar to
MAP4K4/6. MAP4Ks are involved in some MAPK signaling
pathways that are important in mediating cellular
responses to extracellular signals by activating a MAPK
kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK
cascade is activated either by a small GTP-binding
protein or by an adaptor protein, which transmits the
signal either directly to a MAP3K to start the triple
kinase core cascade or indirectly through a mediator
kinase, a MAP4K. MAP4K1, also called haematopoietic
progenitor kinase 1 (HPK1), is a hematopoietic-specific
STK involved in many cellular signaling cascades
including MAPK, antigen receptor, apoptosis, growth
factor, and cytokine signaling. It participates in the
regulation of T cell receptor signaling and T
cell-mediated immune responses. MAP4K2 was referred to
as germinal center (GC) kinase because of its preferred
location in GC B cells. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. It is required in the activation
of S6 kinase by amino acids and for the phosphorylation
of the mTOR-regulated inhibitor of eukaryotic initiation
factor 4E. MAP4K5, also called germinal center
kinase-related enzyme (GCKR), has been shown to activate
the MAPK c-Jun N-terminal kinase (JNK).
Length = 262
Score = 119 bits (301), Expect = 4e-30
Identities = 64/208 (30%), Positives = 106/208 (50%), Gaps = 12/208 (5%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPN--TIERDIMVKSKC--PYI 70
D+++ + I G +GD+Y + + +K + E + I+++I + +C P I
Sbjct: 3 EDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNI 62
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
V F S+ + ++ +MEY GG + + G LSE + + E + + YLH G
Sbjct: 63 VAYFGSYLRRDKLWIVMEYCGGGS-LQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETG 121
Query: 131 YVHRDIKPDNMLLSATGHLKLTDFGSATQVDKN-GRIKSIVPVGTPEYVAPEVLEWMEGN 189
+HRDIK N+LL+ G +KL DFG + Q+ + KS +GTP ++APEV
Sbjct: 122 KIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSF--IGTPYWMAPEVAA----V 175
Query: 190 HGSDGYTGSCDLWSIGVVSYELLTGSTP 217
GY G CD+W++G+ + EL P
Sbjct: 176 ERKGGYDGKCDIWALGITAIELAELQPP 203
>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein
Serine/Threonine Kinase, Atypical Protein Kinase C zeta.
Serine/Threonine Kinases (STKs), Atypical Protein
Kinase C (aPKC) subfamily, zeta isoform, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The aPKC subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. PKCs are
classified into three groups (classical, atypical, and
novel) depending on their mode of activation and the
structural characteristics of their regulatory domain.
aPKCs only require phosphatidylserine (PS) for
activation. There are two aPKC isoforms, zeta and iota.
PKC-zeta plays a critical role in activating the glucose
transport response. It is activated by glucose, insulin,
and exercise through diverse pathways. PKC-zeta also
plays a central role in maintaining cell polarity in
yeast and mammalian cells. In addition, it affects actin
remodeling in muscle cells.
Length = 327
Score = 120 bits (302), Expect = 1e-29
Identities = 77/243 (31%), Positives = 125/243 (51%), Gaps = 21/243 (8%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDIMVKSK--------CPYIVN 72
R I +G++ + LV K++ + MK V +E + + + D + K P++V
Sbjct: 1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVG 60
Query: 73 LFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYV 132
L FQ + ++ ++EYV GGD + ++ Q L E ARFY E+ A+ +LH G +
Sbjct: 61 LHSCFQTTSRLFLVIEYVNGGDLMFHMQRQRK--LPEEHARFYAAEICIALNFLHERGII 118
Query: 133 HRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGS 192
+RD+K DN+LL A GH+KLTD+G + G S GTP Y+APE+L
Sbjct: 119 YRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTF-CGTPNYIAPEILR-------G 170
Query: 193 DGYTGSCDLWSIGVVSYELLTGSTPFNYET--LDM-TYSSILACDTEDTVSFPSSIRLST 249
+ Y S D W++GV+ +E++ G +PF+ T DM T + E + P + +
Sbjct: 171 EEYGFSVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVILEKPIRIPRFLSVKA 230
Query: 250 AMV 252
+ V
Sbjct: 231 SHV 233
>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 3. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek3 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek3 is primarily
localized in the cytoplasm and shows no cell
cycle-dependent changes in its activity. It is present
in the axons of neurons and affects morphogenesis and
polarity through its regulation of microtubule
acetylation. Nek3 modulates the signaling of the
prolactin receptor through its activation of Vav2 and
contributes to prolactin-mediated motility of breast
cancer cells.
Length = 255
Score = 118 bits (296), Expect = 1e-29
Identities = 69/208 (33%), Positives = 105/208 (50%), Gaps = 13/208 (6%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERD-----IMVKSKCPYI 70
+++ R + +G+FG LV+ S + MK++ K + +E ++ K K P I
Sbjct: 1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNI 60
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
V SF+ H+Y +MEY GGD + ++ Q E + ++ VQ++H
Sbjct: 61 VAFKESFEADGHLYIVMEYCDGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKR 120
Query: 131 YVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNH 190
+HRDIK N+ L+ G +KL DFGSA + G + VGTP YV PE+ E M N+
Sbjct: 121 VLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAY-ACTYVGTPYYVPPEIWENMPYNN 179
Query: 191 GSDGYTGSCDLWSIGVVSYELLTGSTPF 218
S D+WS+G + YEL T PF
Sbjct: 180 KS-------DIWSLGCILYELCTLKHPF 200
>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 2. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek2 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. The Nek2
subfamily includes Aspergillus nidulans NIMA kinase, the
founding member of the Nek family, which was identified
in a screen for cell cycle mutants prevented from
entering mitosis. NIMA is essential for mitotic entry
and progression through mitosis, and its degradation is
essential for mitotic exit. NIMA is involved in nuclear
membrane fission. Vertebrate Nek2 is a cell
cycle-regulated STK, localized in centrosomes and
kinetochores, that regulates centrosome splitting at the
G2/M phase. It also interacts with other mitotic kinases
such as Polo-like kinase 1 and may play a role in
spindle checkpoint. An increase in the expression of the
human NEK2 gene is strongly associated with the
progression of non-Hodgkin lymphoma.
Length = 265
Score = 117 bits (295), Expect = 3e-29
Identities = 67/219 (30%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPN------TIERDIMVKSKCPY 69
D+++ I +G+FG + V K V K++ M E +I+ + K P
Sbjct: 1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPN 60
Query: 70 IVNLFYSFQDM-NH-VYFIMEYVTGGDFVTLLEN--QPHGYLSESKARFYIYELAQAVQY 125
IV + D N +Y +MEY GGD L++ + Y+ E + +L A+
Sbjct: 61 IVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYE 120
Query: 126 LHGLGY-----VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAP 180
H +HRD+KP N+ L A ++KL DFG A + + + VGTP Y++P
Sbjct: 121 CHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILG-HDSSFAKTYVGTPYYMSP 179
Query: 181 EVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFN 219
E L NH S Y D+WS+G + YEL S PF
Sbjct: 180 EQL-----NHMS--YDEKSDIWSLGCLIYELCALSPPFT 211
>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 5. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek5 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. The specific function of Nek5
is unknown.
Length = 257
Score = 116 bits (291), Expect = 5e-29
Identities = 69/209 (33%), Positives = 110/209 (52%), Gaps = 15/209 (7%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMP------NTIERDIMVKSKCPYI 70
++I + I +G+FG IYL + K V+K++ KMP + E ++ K K P I
Sbjct: 2 YEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNI 61
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
V F SFQ+ ++ +MEY GGD + + Q SE + + +++ ++++H
Sbjct: 62 VTFFASFQENGRLFIVMEYCDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRK 121
Query: 131 YVHRDIKPDNMLLSATGHL-KLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGN 189
+HRDIK N+ LS G + KL DFG A Q++ + + VGTP Y++PE+ +
Sbjct: 122 ILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTC-VGTPYYLSPEICQ----- 175
Query: 190 HGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
+ Y D+WS+G V YEL T PF
Sbjct: 176 --NRPYNNKTDIWSLGCVLYELCTLKHPF 202
>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional.
Length = 267
Score = 115 bits (290), Expect = 1e-28
Identities = 75/257 (29%), Positives = 130/257 (50%), Gaps = 27/257 (10%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE---RDIMVKSKCPYIVNLFYSFQDMNH 82
G FG + +++ K + FV +K+++ K N IE +M + P + L+YS +
Sbjct: 27 GKFGKVSVLKHKPTQKLFV-QKIIKAKNFNAIEPMVHQLMKDN--PNFIKLYYSVTTLKG 83
Query: 83 VYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNML 142
IM+Y+ GD LL+ + G LSE++ + I +L +A+ LH +H DIK +N+L
Sbjct: 84 HVLIMDYIKDGDLFDLLKKE--GKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVL 141
Query: 143 LS-ATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDL 201
A + L D+G + GT +Y +PE ++ Y S D
Sbjct: 142 YDRAKDRIYLCDYGLCKIIGTPS-----CYDGTLDYFSPEKIK-------GHNYDVSFDW 189
Query: 202 WSIGVVSYELLTGSTPF-NYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQ 260
W++GV++YELLTG PF E ++ S+L + + F ++ S +FVQS+++
Sbjct: 190 WAVGVLTYELLTGKHPFKEDEDEELDLESLLKRQQKK-LPFIKNV--SKNANDFVQSMLK 246
Query: 261 -KLDARL-NMDQVLGHP 275
++ RL N ++++ HP
Sbjct: 247 YNINYRLTNYNEIIKHP 263
>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein
Serine/Threonine Kinase, beta-adrenergic receptor
kinase. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily,
beta-adrenergic receptor kinase (beta-ARK) group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. The beta-ARK
group is composed of GRK2, GRK3, and similar proteins.
GRK2 and GRK3 are both widely expressed in many tissues,
although GRK2 is present at higher levels. They contain
an N-terminal RGS homology (RH) domain, a central
catalytic domain, and C-terminal pleckstrin homology
(PH) domain that mediates PIP2 and G protein
betagamma-subunit translocation to the membrane. GRK2
(also called beta-ARK or beta-ARK1) is important in
regulating several cardiac receptor responses. It plays
a role in cardiac development and in hypertension.
Deletion of GRK2 in mice results in embryonic lethality,
caused by hypoplasia of the ventricular myocardium. GRK2
also plays important roles in the liver (as a regulator
of portal blood pressure), in immune cells, and in the
nervous system. Altered GRK2 expression has been
reported in several disorders including major
depression, schizophrenia, bipolar disorder, and
Parkinsonism.
Length = 278
Score = 115 bits (290), Expect = 1e-28
Identities = 88/295 (29%), Positives = 140/295 (47%), Gaps = 46/295 (15%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMK----KVLREKMPNTI---ERDIMVK----SKCPYIV 71
I +G FG++Y + + + MK K ++ K T+ ER IM+ CP+IV
Sbjct: 2 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNER-IMLSLVSTGDCPFIV 60
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
+ Y+F + + FI++ + GGD L HG SE++ RFY E+ ++++H
Sbjct: 61 CMSYAFHTPDKLSFILDLMNGGDLHYHLSQ--HGVFSEAEMRFYAAEIILGLEHMHNRFV 118
Query: 132 VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
V+RD+KP N+LL GH++++D G A K K VGT Y+APEVL+
Sbjct: 119 VYRDLKPANILLDEHGHVRISDLGLACDFSKK---KPHASVGTHGYMAPEVLQ------K 169
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPF-NYETLDMTYSSILACDT-EDTVSFPSSIRLST 249
Y S D +S+G + ++LL G +PF ++T D D T++ S
Sbjct: 170 GVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDK-----HEIDRMTLTMAVELPDSFSP 224
Query: 250 AMVNFVQSLVQKLDARLNM-------DQVLGHPVFDCLDSD--------PPCIPP 289
+ + ++ L+Q+ D + +V HP F LD PP IPP
Sbjct: 225 ELRSLLEGLLQR-DVNRRLGCLGRGAQEVKEHPFFRSLDWQMVFLQKYPPPLIPP 278
>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), CMGC family, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CMGC family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The CMGC family consists of Cyclin-Dependent
protein Kinases (CDKs), Mitogen-activated protein
kinases (MAPKs) such as Extracellular signal-regulated
kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38,
and similar proteins. CDKs belong to a large subfamily
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. MAPKs
serve as important mediators of cellular responses to
extracellular signals. They control critical cellular
functions including differentiation, proliferation,
migration, and apoptosis. They are also implicated in
the pathogenesis of many diseases including multiple
types of cancer, stroke, diabetes, and chronic
inflammation.
Length = 283
Score = 114 bits (288), Expect = 4e-28
Identities = 76/288 (26%), Positives = 122/288 (42%), Gaps = 40/288 (13%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLR----EKMPNTIERDI--MVKSKCPYIVNLF 74
I +G +G +Y +K + +KK+ E +P T R+I + + P I+ L
Sbjct: 5 GKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLL 64
Query: 75 YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
F+ +Y + E++ + + + Q L ES + Y+Y+L Q + + H G +HR
Sbjct: 65 DVFRHKGDLYLVFEFMDTDLYKLIKDRQRG--LPESLIKSYLYQLLQGLAFCHSHGILHR 122
Query: 135 DIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
D+KP+N+L++ G LKL DFG A R + V T Y APE+L G G
Sbjct: 123 DLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHY-VVTRWYRAPELL------LGDKG 175
Query: 195 YTGSCDLWSIGVVSYELLTGSTPF---NY--------ETLDMTYSSILACDTE----DTV 239
Y+ D+WS+G + ELL+ F + TL + T
Sbjct: 176 YSTPVDIWSVGCIFAELLSRRPLFPGKSEIDQLFKIFRTLGTPDPEVWPKFTSLARNYKF 235
Query: 240 SFPSSI-----RLSTAMVNFVQSLVQKL-----DARLNMDQVLGHPVF 277
SFP +L L+ ++ R+ +Q L HP F
Sbjct: 236 SFPKKAGMPLPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF 283
>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein
Serine/Threonine Kinases, Oxidative stress response
kinase and Ste20-related proline alanine-rich kinase.
Serine/threonine kinases (STKs), oxidative stress
response kinase (OSR1) and Ste20-related proline
alanine-rich kinase (SPAK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The OSR1 and SPAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. SPAK is also referred to as STK39 or PASK
(proline-alanine-rich STE20-related kinase). OSR1 and
SPAK regulate the activity of cation-chloride
cotransporters through direct interaction and
phosphorylation. They are also implicated in
cytoskeletal rearrangement, cell differentiation,
transformation and proliferation. OSR1 and SPAK contain
a conserved C-terminal (CCT) domain, which recognizes a
unique motif ([RK]FX[VI]) present in their activating
kinases (WNK1/WNK4) and their substrates.
Length = 267
Score = 113 bits (284), Expect = 7e-28
Identities = 73/279 (26%), Positives = 133/279 (47%), Gaps = 28/279 (10%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE---RDIMVKSKC--PY 69
D+++ I G +Y ++ +K++ EK +++ +++ S+C P
Sbjct: 1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPN 60
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQ-PHGYLSESKARFYIYELAQAVQYLHG 128
+V + SF + ++ +M Y++GG + ++++ P G L E+ + E+ + ++YLH
Sbjct: 61 VVKYYTSFVVGDELWLVMPYLSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHS 120
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP---VGTPEYVAPEVLEW 185
G +HRDIK N+LL G +K+ DFG + + G V VGTP ++APEV+E
Sbjct: 121 NGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQ 180
Query: 186 MEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF-NY---ETLDMTYSSILAC--DTEDTV 239
+ GY D+WS G+ + EL TG+ P+ Y + L +T + D
Sbjct: 181 VH------GYDFKADIWSFGITAIELATGAAPYSKYPPMKVLMLTLQNDPPSLETGADYK 234
Query: 240 SFPSSIRLSTAMVNFVQSLVQKLDA-RLNMDQVLGHPVF 277
+ S R + +QK + R +++L H F
Sbjct: 235 KYSKSFR------KMISLCLQKDPSKRPTAEELLKHKFF 267
>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent
protein Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase (CDK)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKs are partly
regulated by their subcellular localization, which
defines substrate phosphorylation and the resulting
specific function. CDK1, CDK2, CDK4, and CDK6 have
well-defined functions in the cell cycle, such as the
regulation of the early G1 phase by CDK4 or CDK6, the
G1/S phase transition by CDK2, or the entry of mitosis
by CDK1. They also exhibit overlapping cyclin
specificity and functions in certain conditions.
Knockout mice with a single CDK deleted remain viable
with specific phenotypes, showing that some CDKs can
compensate for each other. For example, CDK4 can
compensate for the loss of CDK6, however, double
knockout mice with both CDK4 and CDK6 deleted die in
utero. CDK8 and CDK9 are mainly involved in
transcription while CDK5 is implicated in neuronal
function. CDK7 plays essential roles in both the cell
cycle as a CDK-Activating Kinase (CAK) and in
transcription as a component of the general
transcription factor TFIIH.
Length = 282
Score = 113 bits (285), Expect = 1e-27
Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 35/218 (16%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE-------RDI--MVKSKC 67
++ + +G +G +Y +K++ +KK+ ++ N E R+I + + K
Sbjct: 1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKI---RLDNEEEGIPSTALREISLLKELKH 57
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P IV L +Y + EY D L+ +P LS + + +Y+L + + Y H
Sbjct: 58 PNIVKLLDVIHTERKLYLVFEYCDM-DLKKYLDKRPGP-LSPNLIKSIMYQLLRGLAYCH 115
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVG--TPE-----YVAP 180
+HRD+KP N+L++ G LKL DFG A R I P+ T E Y AP
Sbjct: 116 SHRILHRDLKPQNILINRDGVLKLADFGLA-------RAFGI-PLRTYTHEVVTLWYRAP 167
Query: 181 EVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
E+L GS Y+ + D+WS+G + E++TG F
Sbjct: 168 EIL------LGSKHYSTAVDIWSVGCIFAEMITGKPLF 199
>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity
Protein Kinase, Mitogen-Activated Protein Kinase Kinase.
Protein kinases (PKs), MAP kinase kinase (MAPKK)
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK or MAP2K), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK or
MAP3K). MAPKKs are dual-specificity PKs that
phosphorylate their downstream targets, MAPKs, at
specific threonine and tyrosine residues. There are
three MAPK subfamilies: extracellular signal-regulated
kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In
mammalian cells, there are seven MAPKKs (named MKK1-7)
and 20 MAPKKKs. Each MAPK subfamily can be activated by
at least two cognate MAPKKs and by multiple MAPKKKs.
Length = 265
Score = 112 bits (282), Expect = 1e-27
Identities = 75/276 (27%), Positives = 122/276 (44%), Gaps = 29/276 (10%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLRE---KMPNTI--ERDIMVKSKCPY 69
D + + GN G + V + + +K + E + I E DI+ K PY
Sbjct: 1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPY 60
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH-G 128
IV + +F + + MEY+ GG +L+ + G + E + + + YLH
Sbjct: 61 IVGFYGAFYNNGDISICMEYMDGGSLDKILK-EVQGRIPERILGKIAVAVLKGLTYLHEK 119
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP--VGTPEYVAPEVLEWM 186
+HRD+KP N+L+++ G +KL DFG + Q+ + S+ VGT Y+APE +
Sbjct: 120 HKIIHRDVKPSNILVNSRGQIKLCDFGVSGQL-----VNSLAKTFVGTSSYMAPERI--- 171
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSIL----ACDTEDTVSFP 242
+GN Y+ D+WS+G+ EL TG P+ E + I E P
Sbjct: 172 QGND----YSVKSDIWSLGLSLIELATGRFPYPPE--NDPPDGIFELLQYIVNEPPPRLP 225
Query: 243 SSIRLSTAMVNFVQSLVQKLDA-RLNMDQVLGHPVF 277
S + S +FV + K R + ++L HP
Sbjct: 226 SG-KFSPDFQDFVNLCLIKDPRERPSYKELLEHPFI 260
>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein
Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2
and similar domains. Serine/Threonine Kinases (STKs),
Chlamydomonas reinhardtii FA2-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Chlamydomonas
reinhardtii FA2-like subfamily belongs to the
(NIMA)-related kinase (Nek) family. The Nek family
includes seven different Chlamydomonas Neks (CNKs 1-6
and Fa2). This subfamily includes FA2 and CNK4. The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Chlamydomonas reinhardtii FA2 was discovered
in a genetic screen for deflagellation-defective
mutants. It is essential for
basal-body/centriole-associated microtubule severing,
and plays a role in cell cycle progression. No cellular
function has yet been ascribed to CNK4.
Length = 256
Score = 112 bits (281), Expect = 1e-27
Identities = 71/214 (33%), Positives = 106/214 (49%), Gaps = 18/214 (8%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERD-------IMVKSKCP 68
DF+I I +G+FG ++ V K + MK++ KM N ER+ ++ K
Sbjct: 1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKM-NRREREEAIDEARVLAKLDSS 59
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKA-RFYIYELAQAVQYLH 127
YI+ + SF D + +MEY GD LL+ Q L E + RF+I L + +LH
Sbjct: 60 YIIRYYESFLDKGKLNIVMEYAENGDLHKLLKMQRGRPLPEDQVWRFFIQILL-GLAHLH 118
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWME 187
+HRDIK N+ L A ++K+ D G A + N + + VGTP Y++PE+ E
Sbjct: 119 SKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTI-VGTPYYLSPELCE--- 174
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYE 221
Y D+W++GVV YE TG PF+
Sbjct: 175 ----DKPYNEKSDVWALGVVLYECCTGKHPFDAN 204
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 111 bits (280), Expect = 2e-27
Identities = 75/273 (27%), Positives = 132/273 (48%), Gaps = 33/273 (12%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLRE-------KMPNTIERDIMVKS--KCPYIV 71
+ + QG FG +YL + + +K+V + K N +E +I + + IV
Sbjct: 8 KLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIV 67
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
+ +D + MEY+ GG L + +G L+E+ R Y ++ + V+YLH
Sbjct: 68 QYYGCLRDDETLSIFMEYMPGGSVKDQL--KAYGALTETVTRKYTRQILEGVEYLHSNMI 125
Query: 132 VHRDIKPDNMLLSATGHLKLTDFGSATQVD----KNGRIKSIVPVGTPEYVAPEVLEWME 187
VHRDIK N+L + G++KL DFG++ ++ +KS+ GTP +++PEV+
Sbjct: 126 VHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSV--TGTPYWMSPEVIS--- 180
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPF-NYETLDMTYSSILACDTEDTV-SFPSSI 245
+GY D+WS+G E+LT P+ +E + ++I T+ T PS +
Sbjct: 181 ----GEGYGRKADVWSVGCTVVEMLTEKPPWAEFEAM----AAIFKIATQPTNPQLPSHV 232
Query: 246 RLSTAMVNFV-QSLVQKLDARLNMDQVLGHPVF 277
S NF+ ++ V+ R + +++L H
Sbjct: 233 --SPDARNFLRRTFVENAKKRPSAEELLRHFFV 263
>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein
Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), plant MAP/ERK kinase
kinase 1 (MEKK1)-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The plant MEKK1 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of plant mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks)
including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1
is a MAPKKK that phosphorylates and activates MAPK
kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. Arabidopsis thaliana
MEKK1 activates MPK4, a MAPK that regulates systemic
acquired resistance. MEKK1 also participates in the
regulation of temperature-sensitive and tissue-specific
cell death.
Length = 258
Score = 110 bits (278), Expect = 3e-27
Identities = 64/207 (30%), Positives = 100/207 (48%), Gaps = 19/207 (9%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT-------IERDIMVKSKC--PYIV 71
+ G+FG +Y + F +K+V T +E++I + SK P IV
Sbjct: 6 ELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIV 65
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
+ ++ +++Y +E V GG LL + +G E R Y ++ ++YLH
Sbjct: 66 QYLGTEREEDNLYIFLELVPGGSLAKLL--KKYGSFPEPVIRLYTRQILLGLEYLHDRNT 123
Query: 132 VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
VHRDIK N+L+ G +KL DFG A QV + KS G+P ++APEV+
Sbjct: 124 VHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSF--KGSPYWMAPEVIA------Q 175
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPF 218
GY + D+WS+G E+ TG P+
Sbjct: 176 QGGYGLAADIWSLGCTVLEMATGKPPW 202
>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 1.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1
(MEKK1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK1 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates MAPK kinases (MAPKKs or
MKKs or MAP2Ks), which in turn phosphorylate and
activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK1 activates the extracellular
signal-regulated kinase 1/2 (ERK1/2) and c-Jun
N-terminal kinase (JNK) pathways by activating their
respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively.
MEKK1 is important in regulating cell survival and
apoptosis. MEKK1 also plays a role in cell migration,
tissue maintenance and homeostasis, and wound healing.
Length = 268
Score = 110 bits (277), Expect = 6e-27
Identities = 65/228 (28%), Positives = 109/228 (47%), Gaps = 21/228 (9%)
Query: 58 ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIY 117
E +M + P+I+ + + + +H +E++ GG LL +G E+ Y
Sbjct: 53 EIRLMARLNHPHIIRMLGATCEDSHFNLFVEWMAGGSVSHLLSK--YGAFKEAVIINYTE 110
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGH-LKLTDFGSA----TQVDKNGRIKSIVPV 172
+L + + YLH +HRD+K N+L+ +TG L++ DFG+A + G + + +
Sbjct: 111 QLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQL-L 169
Query: 173 GTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSI-- 230
GT ++APEVL + Y SCD+WS+G V E+ T P+N E + I
Sbjct: 170 GTIAFMAPEVLR-------GEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHSNHLALIFK 222
Query: 231 LACDTEDTVSFPSSIRLSTAMVNFV-QSLVQKLDARLNMDQVLGHPVF 277
+A T S P LS + + + L + + R ++L HPVF
Sbjct: 223 IASATT-APSIPEH--LSPGLRDVTLRCLELQPEDRPPSRELLKHPVF 267
>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
Byr1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Byr1 from
Schizosaccharomyces pombe, FUZ7 from Ustilago maydis,
and related proteins. Byr1 phosphorylates its downstream
target, the MAPK Spk1, and is regulated by the MAPKKK
Byr2. The Spk1 cascade is pheromone-responsive and is
essential for sporulation and sexual differentiation in
fission yeast. FUZ7 phosphorylates and activates its
target, the MAPK Crk1, which is required in mating and
virulence in U. maydis.
Length = 284
Score = 109 bits (275), Expect = 1e-26
Identities = 81/300 (27%), Positives = 134/300 (44%), Gaps = 56/300 (18%)
Query: 11 NVSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTI--ERDIMVK 64
++ D + + GN G + V+ + T + KKV+ + + I E IM +
Sbjct: 1 DLRNEDLETISDLGAGNGGSVSKVKHIPT-GTVMAKKVVHIGAKSSVRKQILRELQIMHE 59
Query: 65 SKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQ 124
+ PYIV+ + +F + N++ ME++ G + + G + + ++A AV
Sbjct: 60 CRSPYIVSFYGAFLNENNICMCMEFMDCGSLDRIY--KKGGPIPVE----ILGKIAVAV- 112
Query: 125 YLHGLGY-------VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP--VGTP 175
+ GL Y +HRDIKP N+L+++ G +KL DFG + ++ I SI VGT
Sbjct: 113 -VEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGEL-----INSIADTFVGTS 166
Query: 176 EYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDT 235
Y++PE ++ YT D+WS+G+ EL G PF + +D
Sbjct: 167 TYMSPERIQ-------GGKYTVKSDVWSLGISIIELALGKFPFAFSNID----------- 208
Query: 236 EDTVSFPSSIRLSTAMVNFVQSLVQKLDARLNMD---QVLGHPVFDCLDSDPPCIPPPSQ 292
+D P I ++ +Q +VQ+ RL + L V CL DP P P Q
Sbjct: 209 DDGQDDPMGI------LDLLQQIVQEPPPRLPSSDFPEDLRDFVDACLLKDPTERPTPQQ 262
>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent
protein Kinase 9-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK9-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK9 and CDK12 from higher eukaryotes, yeast
BUR1, C-type plant CDKs (CdkC), and similar proteins.
CDK9, BUR1, and CdkC are functionally equivalent. They
act as a kinase for the C-terminal domain of RNA
polymerase II and participate in regulating mutliple
steps of gene expression including transcription
elongation and RNA processing. CDK9 and CdkC associate
with T-type cyclins while BUR1 associates with the
cyclin BUR2. CDK12 is a unique CDK that contains an
arginine/serine-rich (RS) domain, which is predominantly
found in splicing factors. CDK12 interacts with cyclins
L1 and L2, and participates in regulating transcription
and alternative splicing.
Length = 287
Score = 109 bits (275), Expect = 2e-26
Identities = 78/298 (26%), Positives = 125/298 (41%), Gaps = 48/298 (16%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDIMVKSKC--PYI 70
++ I +G +G +Y K++ +KK+ +E P T R+I + K P I
Sbjct: 1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNI 60
Query: 71 VNL--FYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
V L + + +Y + EY+ D LL++ P +ES+ + Y+ +L + +QYLH
Sbjct: 61 VRLKEIVTSKGKGSIYMVFEYMDH-DLTGLLDS-PEVKFTESQIKCYMKQLLEGLQYLHS 118
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEG 188
G +HRDIK N+L++ G LKL DFG A K V T Y PE+L
Sbjct: 119 NGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELL----- 173
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLTGSTPFN----YETLDMTYSSILACDTEDTVSFPS- 243
G+ Y D+WS+G + EL G F E L+ + C + ++P
Sbjct: 174 -LGATRYGPEVDMWSVGCILAELFLGKPIFQGSTELEQLEKIFE---LCGSPTDENWPGV 229
Query: 244 -------SIRLSTAMVN-FVQ-----------SLVQKL-----DARLNMDQVLGHPVF 277
+++ + L+ KL R++ DQ L H F
Sbjct: 230 SKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKLLTLDPKKRISADQALQHEYF 287
>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 1. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK1
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK1, also called rhodopsin kinase,
belongs to the visual group of GRKs and is expressed in
retinal cells. It phosphorylates rhodopsin in rod cells,
which leads to termination of the phototransduction
cascade. Mutations in GRK1 are associated to a
recessively inherited form of stationary nightblindness
called Oguchi disease.
Length = 280
Score = 109 bits (274), Expect = 2e-26
Identities = 76/286 (26%), Positives = 144/286 (50%), Gaps = 32/286 (11%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLREKMPN-------TIERDIMVKSKCPYIVNLFYSF 77
+G FG++ + + + + KK+ ++++ +E+ I+ K +IV+L Y+F
Sbjct: 3 KGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAF 62
Query: 78 QDMNHVYFIMEYVTGGDF----VTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVH 133
Q + +M + GGD + E P E +A FY ++ +++LH ++
Sbjct: 63 QTKTDLCLVMTIMNGGDLRYHIYNVDEENPG--FPEPRACFYTAQIISGLEHLHQRRIIY 120
Query: 134 RDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSD 193
RD+KP+N+LL G+++++D G A ++ K+G+ K+ GTP ++APE+L+ E
Sbjct: 121 RDLKPENVLLDNDGNVRISDLGLAVEL-KDGQSKTKGYAGTPGFMAPELLQGEE------ 173
Query: 194 GYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVN 253
Y S D +++GV YE++ PF + + D+V++P + S A +
Sbjct: 174 -YDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRILNDSVTYPD--KFSPASKS 230
Query: 254 FVQSLVQK-LDARL-----NMDQVLGHPVFDCLD---SDPPCIPPP 290
F ++L+ K + RL N D + HP+F L+ + +PPP
Sbjct: 231 FCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDLNWRQLEAGMLPPP 276
>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Nak1 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The Nak1 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae
Kic1p (kinase that interacts with Cdc31p) and related
proteins. Nak1 (also known as N-rich kinase 1), is
required by fission yeast for polarizing the tips of
actin cytoskeleton and is involved in cell growth, cell
separation, cell morphology and cell-cycle progression.
Kic1p is required by budding yeast for cell integrity
and morphogenesis. Kic1p interacts with Cdc31p, the
yeast homologue of centrin, and phosphorylates
substrates in a Cdc31p-dependent manner.
Length = 277
Score = 109 bits (274), Expect = 2e-26
Identities = 56/151 (37%), Positives = 88/151 (58%), Gaps = 10/151 (6%)
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P I + S+ ++ IMEY GG TL++ P ++E I E+ A++Y+H
Sbjct: 62 PNITKYYGSYLKGPRLWIIMEYAEGGSVRTLMKAGP---IAEKYISVIIREVLVALKYIH 118
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWME 187
+G +HRDIK N+L++ TG++KL DFG A +++N K VGTP ++APEV+ E
Sbjct: 119 KVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSS-KRSTFVGTPYWMAPEVI--TE 175
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
G + Y D+WS+G+ YE+ TG+ P+
Sbjct: 176 GKY----YDTKADIWSLGITIYEMATGNPPY 202
>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase (MAPKK) subfamily, fungal
PBS2-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Polymyxin B
resistance protein 2 (PBS2) from Saccharomyces
cerevisiae, Wis1 from Schizosaccharomyces pombe, and
related proteins. PBS2 and Wis1 are components of
stress-activated MAPK cascades in budding and fission
yeast, respectively. PBS2 is the specific activator of
the MAPK Hog1, which plays a central role in the
response of budding yeast to stress including exposure
to arsenite and hyperosmotic environments. Wis1
phosphorylates and activates the MAPK Sty1 (also called
Spc1 or Phh1), which stimulates a transcriptional
response to a wide range of cellular insults through the
bZip transcription factors Atf1, Pcr1, and Pap1.
Length = 286
Score = 109 bits (273), Expect = 3e-26
Identities = 76/261 (29%), Positives = 124/261 (47%), Gaps = 18/261 (6%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKV---LREKMPNTI--ERDIMVKSKCPYIVNLFYSFQD 79
+GN+G +Y V + + T MK++ L E N I E DI+ K+ PYIV+ + +F
Sbjct: 11 KGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFI 70
Query: 80 MNHVYFIMEYVTGGDFVTLL-ENQPHGYLSESKARFYIYELAQAVQYL-HGLGYVHRDIK 137
VY MEY+ G L + E R Y + + +++L +HRD+K
Sbjct: 71 EGAVYMCMEYMDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVK 130
Query: 138 PDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP--VGTPEYVAPEVLEWMEGNHGSDGY 195
P N+L++ G +KL DFG + + + S+ +G Y+APE ++ G + + Y
Sbjct: 131 PTNVLVNGNGQVKLCDFGVSGNL-----VASLAKTNIGCQSYMAPERIK-SGGPNQNPTY 184
Query: 196 TGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFV 255
T D+WS+G+ E+ G P+ ET ++ + A D + PS S +FV
Sbjct: 185 TVQSDVWSLGLSILEMALGRYPYPPETYANIFAQLSAIVDGDPPTLPSG--YSDDAQDFV 242
Query: 256 QSLVQKLDA-RLNMDQVLGHP 275
+ K+ R Q+L HP
Sbjct: 243 AKCLNKIPNRRPTYAQLLEHP 263
>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 3. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK3
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK3 (also known as beta-adrenergic
receptor kinase 2) is widely expressed in many tissues.
GRK3-deficient mice show a lack of olfactory receptor
desensitization and altered regulation of the M2
muscarinic airway. GRK3 is involved in modulating the
cholinergic response of airway smooth muscles. It also
plays a role in dopamine receptor regulation. GRK3
promoter polymorphisms may be associated with bipolar
disorder.
Length = 279
Score = 107 bits (268), Expect = 1e-25
Identities = 67/206 (32%), Positives = 107/206 (51%), Gaps = 21/206 (10%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMK----KVLREKMPNTI---ER---DIMVKSKCPYIVN 72
I +G FG++Y + + + MK K ++ K T+ ER ++ CP+IV
Sbjct: 2 IGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVC 61
Query: 73 LFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYV 132
+ Y+F + + FI++ + GGD L HG SE + RFY E+ ++++H V
Sbjct: 62 MTYAFHTPDKLCFILDLMNGGDLHYHLSQ--HGVFSEKEMRFYATEIILGLEHMHNRFVV 119
Query: 133 HRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGS 192
+RD+KP N+LL GH++++D G A K K VGT Y+APEVL+
Sbjct: 120 YRDLKPANILLDEHGHVRISDLGLACDFSKK---KPHASVGTHGYMAPEVLQ------KG 170
Query: 193 DGYTGSCDLWSIGVVSYELLTGSTPF 218
Y S D +S+G + ++LL G +PF
Sbjct: 171 TAYDSSADWFSLGCMLFKLLRGHSPF 196
>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein
Kinase Like Serine/Threonine Kinases. Serine/Threonine
Kinases (STKs), Cyclin-dependent protein kinase like
(CDKL) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDKL subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDKL1-5 and similar proteins. Some CDKLs,
like CDKL1 and CDKL3, may be implicated in
transformation and others, like CDKL3 and CDKL5, are
associated with mental retardation when impaired. CDKL2
plays a role in learning and memory.
Length = 288
Score = 107 bits (269), Expect = 1e-25
Identities = 67/189 (35%), Positives = 93/189 (49%), Gaps = 19/189 (10%)
Query: 29 GDIYLVEE-KQSH-NTFVMKKVLRE-KMPNTIERDIMVKSKCPYIVNLFYSFQDMNHVYF 85
G+I +++ K+S + V K LRE K+ + IVNL +F+ +Y
Sbjct: 26 GEIVAIKKFKESEDDEDVKKTALREVKVLRQLRH--------ENIVNLKEAFRRKGRLYL 77
Query: 86 IMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSA 145
+ EYV + LLE P G L R YI++L QA+ Y H +HRDIKP+N+L+S
Sbjct: 78 VFEYV-ERTLLELLEASPGG-LPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSE 135
Query: 146 TGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIG 205
+G LKL DFG A + V T Y APE+L G Y D+W+IG
Sbjct: 136 SGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLV------GDTNYGKPVDVWAIG 189
Query: 206 VVSYELLTG 214
+ ELL G
Sbjct: 190 CIMAELLDG 198
>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 3. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K3 plays a role in the
nutrient-responsive pathway of mTOR (mammalian target of
rapamycin) signaling. MAP4K3 is required in the
activation of S6 kinase by amino acids and for the
phosphorylation of the mTOR-regulated inhibitor of
eukaryotic initiation factor 4E. mTOR regulates ribosome
biogenesis and protein translation, and is frequently
deregulated in cancer.
Length = 267
Score = 105 bits (263), Expect = 3e-25
Identities = 81/283 (28%), Positives = 138/283 (48%), Gaps = 30/283 (10%)
Query: 6 ELRQKNVSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPN--TIERDIMV 63
+L ++N DF++ + I G +GD+Y + +K + E + ++++I++
Sbjct: 1 DLSRRN-PQEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIM 59
Query: 64 KSKC--PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPH--GYLSESKARFYIYEL 119
C IV F S+ + ++ ME+ GG L++ H G LSES+ + E
Sbjct: 60 MKDCKHSNIVAYFGSYLRRDKLWICMEFCGGGS----LQDIYHVTGPLSESQIAYVSRET 115
Query: 120 AQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKN-GRIKSIVPVGTPEYV 178
Q + YLH G +HRDIK N+LL+ GH+KL DFG + Q+ + KS +GTP ++
Sbjct: 116 LQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSF--IGTPYWM 173
Query: 179 APEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTP-FNYETLD----MTYSSILAC 233
APEV GY CD+W++G+ + EL P F+ + MT S+
Sbjct: 174 APEV----AAVERKGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALFLMTKSNFQPP 229
Query: 234 DTEDTVSFPSSIRLSTAMVNFVQ-SLVQKLDARLNMDQVLGHP 275
+D + + +S +FV+ +L + R +++L HP
Sbjct: 230 KLKDKMKWSNSFH------HFVKMALTKNPKKRPTAEKLLQHP 266
>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled
Receptor Kinase 4-like Protein Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), G protein-coupled
Receptor Kinase (GRK) subfamily, GRK4-like group,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The GRK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. GRKs
phosphorylate and regulate G protein-coupled receptors
(GPCRs), the largest superfamily of cell surface
receptors which regulate some part of nearly all
physiological functions. Phosphorylated GPCRs bind to
arrestins, which prevents further G protein signaling
despite the presence of activating ligand. There are
seven types of GRKs, named GRK1 to GRK7. Members of the
GRK4-like group include GRK4, GRK5, GRK6, and similar
GRKs. GRKs in this group contain an N-terminal RGS
homology (RH) domain and a catalytic domain, but lack a
G protein betagamma-subunit binding domain. They are
localized to the plasma membrane through
post-translational lipid modification or direct binding
to PIP2.
Length = 285
Score = 106 bits (265), Expect = 3e-25
Identities = 74/295 (25%), Positives = 139/295 (47%), Gaps = 32/295 (10%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-------ERDIMVKSKCPY 69
F R + +G FG++ + + + + KK+ ++++ E+ I+ K +
Sbjct: 2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRF 61
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
+V+L Y+++ + + ++ + GGD + N + E +A FY E+ ++ LH
Sbjct: 62 VVSLAYAYETKDALCLVLTLMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRE 121
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGN 189
V+RD+KP+N+LL GH++++D G A ++ + I+ VGT Y+APEV++
Sbjct: 122 RIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRG--RVGTVGYMAPEVVK----- 174
Query: 190 HGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLST 249
++ YT S D W +G + YE++ G +PF + + ED + S + S
Sbjct: 175 --NERYTFSPDWWGLGCLIYEMIEGKSPFRQRKEKVKREEVERRVKEDQEEY--SEKFSE 230
Query: 250 AMVNFVQSLVQKLDA-RL-----NMDQVLGHPVFDCLD--------SDPPCIPPP 290
A + + L+ K RL ++V HP F + +PP P P
Sbjct: 231 AARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTANFKRLEAGMLEPPFCPDP 285
>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent
protein Kinase 4 and 6-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) and CDK6-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK4/6-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDK4 and CDK6
partner with D-type cyclins to regulate the early G1
phase of the cell cycle. They are the first kinase
activated by mitogenic signals to release cells from the
G0 arrested state. CDK4 and CDK6 are both expressed
ubiquitously, associate with all three D cyclins (D1, D2
and D3), and phosphorylate the retinoblastoma (pRb)
protein. They are also regulated by the INK4 family of
inhibitors which associate with either the CDK alone or
the CDK/cyclin complex. CDK4 and CDK6 show differences
in subcellular localization, sensitivity to some
inhibitors, timing in activation, tumor selectivity, and
possibly substrate profiles. Although CDK4 and CDK6 seem
to show some redundancy, they also have discrete,
nonoverlapping functions. CDK6 plays an important role
in cell differentiation.
Length = 287
Score = 105 bits (264), Expect = 5e-25
Identities = 56/203 (27%), Positives = 87/203 (42%), Gaps = 24/203 (11%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDIMVKSK-----CPYIVNL 73
I +G +G +Y + + +KKV E +P + R+I + + P IV L
Sbjct: 7 IGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRL 66
Query: 74 FYSFQDMN-----HVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
+ + E+V D T L P L + + +L + V +LH
Sbjct: 67 LDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHS 125
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEG 188
VHRD+KP N+L+++ G +K+ DFG A + S+V T Y APEVL
Sbjct: 126 HRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTSVVV--TLWYRAPEVLL---- 179
Query: 189 NHGSDGYTGSCDLWSIGVVSYEL 211
Y D+WS+G + EL
Sbjct: 180 ---QSSYATPVDMWSVGCIFAEL 199
>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein
Serine/Threonine Kinase, STK25 or Yeast
Sps1/Ste20-related kinase 1. Serine/threonine kinases
(STKs), STK25 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The STK25 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. STK25 is also called Ste20/oxidant stress
response kinase 1 (SOK1) or yeast Sps1/Ste20-related
kinase 1 (YSK1). STK25 is localized in the Golgi
apparatus through its interaction with the Golgi matrix
protein GM130. It may play a role in the regulation of
cell migration and polarization. STK25 binds and
phosphorylates CCM3 (cerebral cavernous malformation 3),
also called PCD10 (programmed cell death 10), and may
play a role in apoptosis. Human STK25 is a candidate
gene responsible for pseudopseudohypoparathyroidism
(PPHP), a disease that shares features with the Albright
hereditary osteodystrophy (AHO) phenotype.
Length = 277
Score = 105 bits (262), Expect = 6e-25
Identities = 68/202 (33%), Positives = 109/202 (53%), Gaps = 16/202 (7%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE---RDIMVKSKC--PYIVNLFYSF 77
I +G+FG++Y + ++ +K + E+ + IE ++I V S+C PYI + S+
Sbjct: 12 IGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSY 71
Query: 78 QDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIK 137
++ IMEY+ GG + LL+ P L E+ + E+ + + YLH +HRDIK
Sbjct: 72 LKGTKLWIIMEYLGGGSALDLLKPGP---LEETYIATILREILKGLDYLHSERKIHRDIK 128
Query: 138 PDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTG 197
N+LLS G +KL DFG A Q+ + +IK VGTP ++APEV++ Y
Sbjct: 129 AANVLLSEQGDVKLADFGVAGQL-TDTQIKRNTFVGTPFWMAPEVIK-------QSAYDF 180
Query: 198 SCDLWSIGVVSYELLTGSTPFN 219
D+WS+G+ + EL G P +
Sbjct: 181 KADIWSLGITAIELAKGEPPNS 202
>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 7. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK7
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors, which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs
to the visual group of GRKs. It is primarily found in
the retina and plays a role in the regulation of opsin
light receptors. GRK7 is located in retinal cone outer
segments and plays an important role in regulating
photoresponse of the cones.
Length = 277
Score = 103 bits (258), Expect = 2e-24
Identities = 67/226 (29%), Positives = 115/226 (50%), Gaps = 20/226 (8%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLR--------EKMPNTIERDIMVKSKCPYIVNLFYS 76
+G FG++ V+ K + + KK+ + EKM +E++I+ K P+IVNL Y+
Sbjct: 3 KGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMA-LLEKEILEKVNSPFIVNLAYA 61
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDI 136
F+ H+ +M + GGD + N L + Y ++ + +LH + V+RD+
Sbjct: 62 FESKTHLCLVMSLMNGGDLKYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDM 121
Query: 137 KPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP-VGTPEYVAPEVLEWMEGNHGSDGY 195
KP+N+LL G+ +L+D G A ++ K+G K+I GT Y+APE+L+ + Y
Sbjct: 122 KPENVLLDDQGNCRLSDLGLAVEL-KDG--KTITQRAGTNGYMAPEILK-------EEPY 171
Query: 196 TGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSF 241
+ D +++G YE++ G TPF + + ED V F
Sbjct: 172 SYPVDWFAMGCSIYEMVAGRTPFKDHKEKVAKEELKRRTLEDEVKF 217
>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein
Serine/Threonine Kinase, Group I p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group I, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs are
implicated in the regulation of many cellular processes
including growth factor receptor-mediated proliferation,
cell polarity, cell motility, cell death and survival,
and actin cytoskeleton organization. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group I PAKs, also called conventional PAKs, include
PAK1, PAK2, and PAK3. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). They interact
with the SH3 domain containing proteins Nck, Grb2 and
PIX. Binding of group I PAKs to activated GTPases leads
to conformational changes that destabilize the AID,
allowing autophosphorylation and full activation of the
kinase domain. Known group I PAK substrates include
MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc,
Stat5a, and Aurora A, among others.
Length = 293
Score = 103 bits (258), Expect = 3e-24
Identities = 79/266 (29%), Positives = 131/266 (49%), Gaps = 27/266 (10%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT--IERDIMV--KSKCPYIVNLFYSFQ 78
I QG G +Y + + +K++ ++ P I +I+V ++K P IVN S+
Sbjct: 27 IGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYL 86
Query: 79 DMNHVYFIMEYVTGG---DFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
+ ++ +MEY+ GG D VT E + E + E QA+++LH +HRD
Sbjct: 87 VGDELWVVMEYLAGGSLTDVVT--ETC----MDEGQIAAVCRECLQALEFLHSNQVIHRD 140
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
IK DN+LL G +KLTDFG Q+ +S + VGTP ++APEV+ Y
Sbjct: 141 IKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTM-VGTPYWMAPEVVT-------RKAY 192
Query: 196 TGSCDLWSIGVVSYELLTGSTPF-NYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNF 254
D+WS+G+++ E++ G P+ N L Y ++A T T + +LS +F
Sbjct: 193 GPKVDIWSLGIMAIEMVEGEPPYLNENPLRALY--LIA--TNGTPELQNPEKLSAIFRDF 248
Query: 255 V-QSLVQKLDARLNMDQVLGHPVFDC 279
+ + L ++ R + ++L HP
Sbjct: 249 LNRCLEMDVEKRGSAKELLQHPFLKI 274
>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ
cell-Associated Kinase-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Male germ
cell-Associated Kinase (MAK)-like subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of human MAK and
MAK-related kinase (MRK), Saccharomyces cerevisiae
Ime2p, Schizosaccharomyces pombe Mei4-dependent protein
3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5,
Arabidopsis thaliana MHK, and similar proteins. These
proteins play important roles during meiosis. MAK is
highly expressed in testicular cells specifically in the
meiotic phase, but is not essential for spermatogenesis
and fertility. It functions as a coactivator of the
androgen receptor in prostate cells. MRK, also called
Intestinal Cell Kinase (ICK), is expressed ubiquitously,
with highest expression in the ovary and uterus. A
missense mutation in MRK causes
endocrine-cerebro-osteodysplasia (ECO), suggesting that
this protein plays an important role in the development
of many organs. MAK and MRK may be involved in
regulating cell cycle and cell fate. Ime2p is a
meiosis-specific kinase that is important during meiotic
initiation and during the later stages of meiosis. Mde3
functions downstream of the transcription factor Mei-4
which is essential for meiotic prophase I.
Length = 283
Score = 102 bits (258), Expect = 3e-24
Identities = 65/209 (31%), Positives = 102/209 (48%), Gaps = 45/209 (21%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKV------------LREKMPNTIERDIMVKS-----KCP 68
G FG +YL K++ +KK+ LRE VKS + P
Sbjct: 10 GTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLRE-----------VKSLRKLNEHP 58
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
IV L F++ + +YF+ EY+ G + L++++ SES R IY++ Q + ++H
Sbjct: 59 NIVKLKEVFRENDELYFVFEYMEG-NLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHK 117
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP----VGTPEYVAPEVLE 184
G+ HRD+KP+N+L+S +K+ DFG A + I+S P V T Y APE+L
Sbjct: 118 HGFFHRDLKPENLLVSGPEVVKIADFGLARE------IRSRPPYTDYVSTRWYRAPEIL- 170
Query: 185 WMEGNHGSDGYTGSCDLWSIGVVSYELLT 213
S Y+ D+W++G + EL T
Sbjct: 171 -----LRSTSYSSPVDIWALGCIMAELYT 194
>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase.
Length = 258
Score = 102 bits (256), Expect = 4e-24
Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 29/225 (12%)
Query: 19 IKRFIQQGNFGDIY---LVEEKQSHNTFVMKKVLREKMPNTIERD------IMVKSKCPY 69
+ + + +G FG++Y L + + T V K L+E + IM K P
Sbjct: 3 LGKKLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPN 62
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
IV L +Y + EY+ GGD + L L+ ++A+ ++YL
Sbjct: 63 IVRLLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEK-LTLKDLLQMALQIAKGMEYLESK 121
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNG----RIKSIVPVGTPEYVAPEVLEW 185
+VHRD+ N L++ +K++DFG + + ++ R +P+ +++APE L+
Sbjct: 122 NFVHRDLAARNCLVTENLVVKISDFGLSRDIYEDDYYRKRGGGKLPI---KWMAPESLKD 178
Query: 186 MEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----NYETLDM 225
+ S D+WS GV+ +E+ T G P+ N E L++
Sbjct: 179 GKFTSKS-------DVWSFGVLLWEIFTLGEQPYPGMSNEEVLEL 216
>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 9. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek9 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek9, also called
Nercc1, is primarily a cytoplasmic protein but can also
localize in the nucleus. It is involved in modulating
chromosome alignment and splitting during mitosis. It
interacts with the gamma-tubulin ring complex and the
Ran GTPase, and is implicated in microtubule
organization. Nek9 associates with FACT (FAcilitates
Chromatin Transcription) and modulates interphase
progression. It also interacts with Nek6, and Nek7,
during mitosis, resulting in their activation.
Length = 256
Score = 101 bits (253), Expect = 6e-24
Identities = 78/264 (29%), Positives = 124/264 (46%), Gaps = 22/264 (8%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKV----LREKMPNTIERDIMVKSKC--PYIVNLF 74
R + +G FG+ L + + V K+V L EK +I++ S P I+ +
Sbjct: 6 RVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYY 65
Query: 75 YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
F D N + MEY GG + Q E +Y++++ AV Y+H G +HR
Sbjct: 66 NHFMDDNTLLIEMEYANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHR 125
Query: 135 DIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
DIK N+ L+ G +KL DFG + + + V VGTP Y++PE+ + ++ N S
Sbjct: 126 DIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETV-VGTPYYMSPELCQGVKYNFKS-- 182
Query: 195 YTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNF 254
D+W++G V YELLT F+ I+ + VS S+ +++
Sbjct: 183 -----DIWALGCVLYELLTLKRTFDATNPLNLVVKIVQGNYTPVVS-----VYSSELISL 232
Query: 255 VQSLVQKLDA--RLNMDQVLGHPV 276
V SL+Q+ D R D+VL P+
Sbjct: 233 VHSLLQQ-DPEKRPTADEVLDQPL 255
>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 3. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 3 (MST3) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST3
phosphorylates the STK NDR and may play a role in cell
cycle progression and cell morphology. It may also
regulate paxillin and consequently, cell migration. MST3
is present in human placenta, where it plays an
essential role in the oxidative stress-induced apoptosis
of trophoblasts in normal spontaneous delivery.
Dysregulation of trophoblast apoptosis may result in
pregnancy complications such as preeclampsia and
intrauterine growth retardation.
Length = 277
Score = 102 bits (254), Expect = 7e-24
Identities = 67/200 (33%), Positives = 109/200 (54%), Gaps = 16/200 (8%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE---RDIMVKSKC--PYIVNLFYSF 77
I +G+FG+++ + ++ +K + E+ + IE ++I V S+C PY+ + S+
Sbjct: 12 IGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSY 71
Query: 78 QDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIK 137
++ IMEY+ GG + LLE P L E++ + E+ + + YLH +HRDIK
Sbjct: 72 LKDTKLWIIMEYLGGGSALDLLEPGP---LDETQIATILREILKGLDYLHSEKKIHRDIK 128
Query: 138 PDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTG 197
N+LLS G +KL DFG A Q+ + +IK VGTP ++APEV++ Y
Sbjct: 129 AANVLLSEHGEVKLADFGVAGQL-TDTQIKRNTFVGTPFWMAPEVIK-------QSAYDS 180
Query: 198 SCDLWSIGVVSYELLTGSTP 217
D+WS+G+ + EL G P
Sbjct: 181 KADIWSLGITAIELAKGEPP 200
>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 1. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek1 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek1 is
associated with centrosomes throughout the cell cycle.
It is involved in the formation of primary cilium and in
the maintenance of centrosomes. It cycles through the
nucleus and may be capable of relaying signals between
the cilium and the nucleus. Nek1 is implicated in the
development of polycystic kidney disease, which is
characterized by benign polycystic tumors formed by
abnormal overgrowth of renal epithelial cells. It
appears also to be involved in DNA damage response, and
may be important for both correct DNA damage checkpoint
activation and DNA repair.
Length = 256
Score = 100 bits (251), Expect = 1e-23
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 16/198 (8%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERD-------IMVKSKCPYIVNLFY 75
I +G+FG LV+ K+ +V+K++ KM ER+ ++ K P IV
Sbjct: 8 IGEGSFGKAILVKSKEDGKQYVIKEINISKMSPK-EREESRKEVAVLSNMKHPNIVQYQE 66
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
SF++ ++Y +M+Y GGD + Q E + + ++ A++++H +HRD
Sbjct: 67 SFEENGNLYIVMDYCEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRD 126
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
IK N+ L+ G +KL DFG A ++ + +GTP Y++PE+ E + Y
Sbjct: 127 IKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTC-IGTPYYLSPEICE-------NRPY 178
Query: 196 TGSCDLWSIGVVSYELLT 213
D+W++G V YE+ T
Sbjct: 179 NNKSDIWALGCVLYEMCT 196
>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal
Byr2-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Byr2-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae
and Cryptococcus neoformans Ste11, and related proteins.
They contain an N-terminal SAM (sterile alpha-motif)
domain, which mediates protein-protein interaction, and
a C-terminal catalytic domain. MAPKKKs phosphorylate and
activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which
in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Fission
yeast Byr2 is regulated by Ras1. It responds to
pheromone signaling and controls mating through the MAPK
pathway. Budding yeast Ste11 functions in MAPK cascades
that regulate mating, high osmolarity glycerol, and
filamentous growth responses.
Length = 267
Score = 101 bits (252), Expect = 1e-23
Identities = 63/214 (29%), Positives = 104/214 (48%), Gaps = 27/214 (12%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVL-----------REKMPNTIERDIMVKSKC--PY 69
I G+FG +YL S +K+V + M + + R+I + +
Sbjct: 8 IGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHEN 67
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
IV S D +H+ +EYV GG LL N +G E+ R ++ ++ + + YLH
Sbjct: 68 IVQYLGSSLDADHLNIFLEYVPGGSVAALLNN--YGAFEETLVRNFVRQILKGLNYLHNR 125
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKN---GRIKSIVPV--GTPEYVAPEVLE 184
G +HRDIK N+L+ G +K++DFG + +++ N + P G+ ++APEV++
Sbjct: 126 GIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWMAPEVVK 185
Query: 185 WMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
YT D+WS+G + E+LTG PF
Sbjct: 186 -------QTSYTRKADIWSLGCLVVEMLTGKHPF 212
>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein
Serine/Threonine Kinase, Mammalian Ste20-like protein
kinase 4. Serine/threonine kinases (STKs), mammalian
Ste20-like protein kinase 4 (MST4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MST4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MST4 is sometimes
referred to as MASK (MST3 and SOK1-related kinase). It
plays a role in mitogen-activated protein kinase (MAPK)
signaling during cytoskeletal rearrangement,
morphogenesis, and apoptosis. It influences cell growth
and transformation by modulating the extracellular
signal-regulated kinase (ERK) pathway. MST4 may also
play a role in tumor formation and progression. It
localizes in the Golgi apparatus by interacting with the
Golgi matrix protein GM130 and may play a role in cell
migration.
Length = 277
Score = 101 bits (252), Expect = 1e-23
Identities = 65/200 (32%), Positives = 106/200 (53%), Gaps = 16/200 (8%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE---RDIMVKSKC--PYIVNLFYSF 77
I +G+FG+++ + ++ +K + E+ + IE ++I V S+C PY+ + S+
Sbjct: 12 IGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSY 71
Query: 78 QDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIK 137
++ IMEY+ GG + LL P E + + E+ + + YLH +HRDIK
Sbjct: 72 LKGTKLWIIMEYLGGGSALDLLRAGP---FDEFQIATMLKEILKGLDYLHSEKKIHRDIK 128
Query: 138 PDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTG 197
N+LLS G +KL DFG A Q+ + +IK VGTP ++APEV++ Y
Sbjct: 129 AANVLLSEQGDVKLADFGVAGQL-TDTQIKRNTFVGTPFWMAPEVIQ-------QSAYDS 180
Query: 198 SCDLWSIGVVSYELLTGSTP 217
D+WS+G+ + EL G P
Sbjct: 181 KADIWSLGITAIELAKGEPP 200
>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein
Serine/Threonine Kinase, Mitogen-activated protein
kinase kinase kinase kinase 5. Serine/threonine kinases
(STKs), mitogen-activated protein kinase (MAPK) kinase
kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAP4K5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to MAP4K4/6. MAP4Ks are involved in some MAPK
signaling pathways that are important in mediating
cellular responses to extracellular signals by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). Each MAPK cascade is activated either by a small
GTP-binding protein or by an adaptor protein, which
transmits the signal either directly to a MAP3K to start
the triple kinase core cascade or indirectly through a
mediator kinase, a MAP4K. MAP4K5, also called germinal
center kinase-related enzyme (GCKR), has been shown to
activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5
also facilitates Wnt signaling in B cells, and may
therefore be implicated in the control of cell fate,
proliferation, and polarity.
Length = 267
Score = 99.3 bits (247), Expect = 5e-23
Identities = 77/277 (27%), Positives = 134/277 (48%), Gaps = 20/277 (7%)
Query: 6 ELRQKNVSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPN--TIERDIMV 63
++ ++N D+++ + + G +GD+Y + +K + E + I+++I +
Sbjct: 1 DILRRN-PQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFM 59
Query: 64 KSKCPY--IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPH--GYLSESKARFYIYEL 119
+C + IV F S+ ++ MEY GG L++ H G LSE + + E
Sbjct: 60 VKECKHCNIVAYFGSYLSREKLWICMEYCGGGS----LQDIYHVTGPLSELQIAYVCRET 115
Query: 120 AQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKN-GRIKSIVPVGTPEYV 178
Q + YLH G +HRDIK N+LL+ G +KL DFG A ++ + KS +GTP ++
Sbjct: 116 LQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSF--IGTPYWM 173
Query: 179 APEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDT 238
APEV +E N GY CD+W++G+ + EL P ++ M +++
Sbjct: 174 APEVAA-VEKN---GGYNQLCDIWAVGITAIELAELQPPM-FDLHPMRALFLMSKSNFQP 228
Query: 239 VSFPSSIRLSTAMVNFVQ-SLVQKLDARLNMDQVLGH 274
+ S+ NFV+ SL + R +++L H
Sbjct: 229 PKLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTH 265
>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III
myosin-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), Class III myosin-like
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin-like subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins with an N-terminal kinase catalytic domain and
a C-terminal actin-binding motor domain. Class III
myosins are present in the photoreceptors of
invertebrates and vertebrates and in the auditory hair
cells of mammals. The kinase domain of myosin III can
phosphorylate several cytoskeletal proteins,
conventional myosin regulatory light chains, and can
autophosphorylate the C-terminal motor domain. Myosin
III may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
It may also function as a cargo carrier during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. The
Drosophila class III myosin, called NinaC (Neither
inactivation nor afterpotential protein C), is critical
in normal adaptation and termination of photoresponse.
Vertebrates contain two isoforms of class III myosin,
IIIA and IIIB. This subfamily also includes mammalian
NIK-like embryo-specific kinase (NESK), Traf2- and
Nck-interacting kinase (TNIK), mitogen-activated protein
kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or
MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in
some MAPK signaling pathways by activating a MAPK kinase
kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Length = 275
Score = 98.9 bits (247), Expect = 8e-23
Identities = 75/284 (26%), Positives = 126/284 (44%), Gaps = 37/284 (13%)
Query: 14 ASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL--REKMPNTIERDI-MVK--SKCP 68
F++ I +G +G +Y K++ V K++ E I+ + +++ S P
Sbjct: 5 TGIFELVEVIGEGTYGKVYKARHKKT-GQLVAIKIMDIIEDEEEEIKEEYNILRKYSNHP 63
Query: 69 YIVNLFYSFQDMNH------VYFIMEYVTGG---DFV--TLLENQPHGYLSESKARFYIY 117
I + +F N ++ +ME GG D V + + L E + +
Sbjct: 64 NIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKKGKR---LKEEWIAYILR 120
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDK-NGRIKSIVPVGTPE 176
E + + YLH +HRDIK N+LL+ +KL DFG + Q+D GR + +GTP
Sbjct: 121 ETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTF--IGTPY 178
Query: 177 YVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDM----TYSSILA 232
++APEV+ E S Y D+WS+G+ + EL G P DM I
Sbjct: 179 WMAPEVIACDEQPDAS--YDARSDVWSLGITAIELADGKPPL----CDMHPMRALFKIPR 232
Query: 233 CDTEDTVSFPSSIRLSTAMVNFV-QSLVQKLDARLNMDQVLGHP 275
+ T+ P S +F+ + L++ + R M+++L HP
Sbjct: 233 -NPPPTLKSPE--NWSKKFNDFISECLIKNYEQRPFMEELLEHP 273
>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 5. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK5
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK5 is widely expressed in many tissues.
It associates with the membrane though an N-terminal
PIP2 binding domain and also binds phospholipids via its
C-terminus. GRK5 deficiency is associated with early
Alzheimer's disease in humans and mouse models. GRK5
also plays a crucial role in the pathogenesis of
sporadic Parkinson's disease. It participates in the
regulation and desensitization of PDGFRbeta, a receptor
tyrosine kinase involved in a variety of downstream
cellular effects including cell growth, chemotaxis,
apoptosis, and angiogenesis. GRK5 also regulates
Toll-like receptor 4, which is involved in innate and
adaptive immunity.
Length = 285
Score = 98.9 bits (246), Expect = 1e-22
Identities = 57/205 (27%), Positives = 108/205 (52%), Gaps = 16/205 (7%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-------ERDIMVKSKCPYIVNL 73
R + +G FG++ + + + + K++ ++++ E+ I+ K ++VNL
Sbjct: 6 RVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNL 65
Query: 74 FYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVH 133
Y+++ + + ++ + GGD + N + E +A FY E+ ++ LH V+
Sbjct: 66 AYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVY 125
Query: 134 RDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSD 193
RD+KP+N+LL GH++++D G A ++ + I+ VGT Y+APEVL +
Sbjct: 126 RDLKPENILLDDYGHIRISDLGLAVKIPEGESIRG--RVGTVGYMAPEVLN-------NQ 176
Query: 194 GYTGSCDLWSIGVVSYELLTGSTPF 218
YT S D W +G + YE++ G +PF
Sbjct: 177 RYTLSPDYWGLGCLIYEMIEGQSPF 201
>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 4. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK4
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK4 has a limited tissue distribution. It
is mainly found in the testis, but is also present in
the cerebellum and kidney. It is expressed as multiple
splice variants with different domain architectures. It
is post-translationally palmitoylated and localized in
the membrane. GRK4 polymorphisms are associated with
hypertension and salt sensitivity, as they cause
hyperphosphorylation, desensitization, and
internalization of the dopamine 1 (D1) receptor while
increasing the expression of the angiotensin II type 1
receptor. GRK4 plays a crucial role in the D1 receptor
regulation of sodium excretion and blood pressure.
Length = 285
Score = 98.5 bits (245), Expect = 1e-22
Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 16/205 (7%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-------ERDIMVKSKCPYIVNL 73
R + +G FG++ + + + + KK+ ++++ E+ I+ K ++V+L
Sbjct: 6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSL 65
Query: 74 FYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVH 133
Y+++ + + ++ + GGD + N + E +A FY EL ++ L V+
Sbjct: 66 AYAYETKDALCLVLTIMNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVY 125
Query: 134 RDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSD 193
RD+KP+N+LL GH++++D G A Q+ + ++ VGT Y+APEV+ ++
Sbjct: 126 RDLKPENILLDDRGHIRISDLGLAVQIPEGETVRG--RVGTVGYMAPEVIN-------NE 176
Query: 194 GYTGSCDLWSIGVVSYELLTGSTPF 218
YT S D W +G + YE++ G +PF
Sbjct: 177 KYTFSPDWWGLGCLIYEMIQGQSPF 201
>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity.
Phosphotransferases. The specificity of this class of
kinases can not be predicted. Possible dual-specificity
Ser/Thr/Tyr kinase.
Length = 258
Score = 96.5 bits (241), Expect = 3e-22
Identities = 54/213 (25%), Positives = 95/213 (44%), Gaps = 23/213 (10%)
Query: 19 IKRFIQQGNFGDIYLVE-EKQSHNTFVM---KKVLREKMPNTI-----ERDIMVKSKCPY 69
+ + + +G FG++Y + + V K + + I E IM K P
Sbjct: 3 LGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN 62
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
IV L + + +MEY+ GGD + L LS S + ++A+ ++YL
Sbjct: 63 IVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESK 122
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSI---VPVGTPEYVAPEVLEWM 186
++HRD+ N L+ +K++DFG + + + K +P+ ++APE L
Sbjct: 123 NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKVKGGKLPI---RWMAPESL--- 176
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
G +T D+WS GV+ +E+ T G P+
Sbjct: 177 --KEGK--FTSKSDVWSFGVLLWEIFTLGEEPY 205
>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 5.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 5, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK5 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK5 is mainly expressed in the brain. It
is not required for viability, but together with PAK6,
it is required for normal levels of locomotion and
activity, and for learning and memory. PAK5 cooperates
with Inca (induced in neural crest by AP2) in the
regulation of cell adhesion and cytoskeletal
organization in the embryo and in neural crest cells
during craniofacial development. PAK5 may also play a
role in controlling the signaling of Raf-1, an effector
of Ras, at the mitochondria.
Length = 292
Score = 97.0 bits (241), Expect = 4e-22
Identities = 78/275 (28%), Positives = 137/275 (49%), Gaps = 26/275 (9%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKV-LREKMPNTI---ERDIMVKSKCPYIVNLFYSFQ 78
I +G+ G + + EK + +KK+ LR++ + E IM +V+++ S+
Sbjct: 30 IGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYL 89
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
+ ++ +ME++ GG ++ H ++E + + +A+ YLH G +HRDIK
Sbjct: 90 VGDELWVVMEFLEGGALTDIVT---HTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKS 146
Query: 139 DNMLLSATGHLKLTDFGSATQVDKN-GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTG 197
D++LL++ G +KL+DFG QV K + KS+ VGTP ++APEV+ + Y
Sbjct: 147 DSILLTSDGRIKLSDFGFCAQVSKEVPKRKSL--VGTPYWMAPEVISRLP-------YGT 197
Query: 198 SCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTV--SFPSSIRLSTAMVNFV 255
D+WS+G++ E++ G P+ E I D + S ++S+ + F+
Sbjct: 198 EVDIWSLGIMVIEMIDGEPPYFNEPPLQAMRRI-----RDNLPPRVKDSHKVSSVLRGFL 252
Query: 256 Q-SLVQKLDARLNMDQVLGHPVFDCLDSDPPCIPP 289
LV++ R ++L HP F L P CI P
Sbjct: 253 DLMLVREPSQRATAQELLQHP-FLKLAGPPSCIVP 286
>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like
Protein Serine/Threonine Kinases. Serine/threonine
kinases (STKs), Ste20-like kinase (SLK)-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of the subfamily include SLK, STK10
(also called LOK for lymphocyte-oriented kinase), SmSLK
(Schistosoma mansoni SLK), and related proteins. SLK
promotes apoptosis through apoptosis signal-regulating
kinase 1 (ASK1) and the mitogen-activated protein kinase
(MAPK) p38. It also plays a role in mediating actin
reorganization. STK10 is responsible in regulating the
CD28 responsive element in T cells, as well as leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. SmSLK is capable of activating the MAPK Jun
N-terminal kinase (JNK) pathway in human embryonic
kidney (HEK) cells as well as in Xenopus oocytes. It may
participate in regulating MAPK cascades during
host-parasite interactions.
Length = 280
Score = 96.7 bits (241), Expect = 5e-22
Identities = 69/259 (26%), Positives = 128/259 (49%), Gaps = 16/259 (6%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKVLREKMPN-----TIERDIMVKSKCPYIVNLFYSFQDM 80
G FG +Y + K++ F K+++ + +E DI+ + K P IV L+ ++
Sbjct: 16 GAFGKVYKAQHKET-GLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYE 74
Query: 81 NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
N ++ ++E+ GG +++ G L+E + R+ ++ +A+ +LH +HRD+K N
Sbjct: 75 NKLWILIEFCDGGALDSIMLELERG-LTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGN 133
Query: 141 MLLSATGHLKLTDFG-SATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSC 199
+LL+ G +KL DFG SA + + +GTP ++APEV+ + Y
Sbjct: 134 ILLTLDGDVKLADFGVSAKNKSTLQKRDTF--IGTPYWMAPEVV--ACETFKDNPYDYKA 189
Query: 200 DLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQS-L 258
D+WS+G+ EL P ++E M +L + + + S++ +F++S L
Sbjct: 190 DIWSLGITLIELAQMEPP-HHELNPMRV--LLKILKSEPPTLDQPSKWSSSFNDFLKSCL 246
Query: 259 VQKLDARLNMDQVLGHPVF 277
V+ D R ++L HP
Sbjct: 247 VKDPDDRPTAAELLKHPFV 265
>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein
Serine/Threonine Kinase, G protein-coupled Receptor
Kinase 6. Serine/Threonine Kinases (STKs), G
protein-coupled Receptor Kinase (GRK) subfamily, GRK6
isoform, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The GRK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. GRKs phosphorylate and regulate G
protein-coupled receptors (GPCRs), the largest
superfamily of cell surface receptors which regulate
some part of nearly all physiological functions.
Phosphorylated GPCRs bind to arrestins, which prevents
further G protein signaling despite the presence of
activating ligand. There are seven types of GRKs, named
GRK1 to GRK7. GRK6 is widely expressed in many tissues.
t is expressed as multiple splice variants with
different domain architectures. It is
post-translationally palmitoylated and localized in the
membrane. GRK6 plays important roles in the regulation
of dopamine, M3 muscarinic, opioid, and chemokine
receptor signaling. It also plays maladaptive roles in
addiction and Parkinson's disease. GRK6-deficient mice
exhibit altered dopamine receptor regulation, decreased
lymphocyte chemotaxis, and increased acute inflammation
and neutrophil chemotaxis.
Length = 285
Score = 96.2 bits (239), Expect = 7e-22
Identities = 57/205 (27%), Positives = 109/205 (53%), Gaps = 16/205 (7%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-------ERDIMVKSKCPYIVNL 73
R + +G FG++ + + + + KK+ ++++ E+ I+ K ++V+L
Sbjct: 6 RVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSL 65
Query: 74 FYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVH 133
Y+++ + + ++ + GGD + + E +A FY E+ ++ LH V+
Sbjct: 66 AYAYETKDALCLVLTLMNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVY 125
Query: 134 RDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSD 193
RD+KP+N+LL GH++++D G A V + IK VGT Y+APEV++ ++
Sbjct: 126 RDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKG--RVGTVGYMAPEVVK-------NE 176
Query: 194 GYTGSCDLWSIGVVSYELLTGSTPF 218
YT S D W++G + YE++ G +PF
Sbjct: 177 RYTFSPDWWALGCLLYEMIAGQSPF 201
>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein
Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase
4. Serine/threonine kinases (STKs), yeast
Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The YSK4 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. YSK4 is a
putative MAPKKK, whose mammalian gene has been isolated.
MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals.
Length = 265
Score = 95.7 bits (238), Expect = 8e-22
Identities = 73/268 (27%), Positives = 112/268 (41%), Gaps = 31/268 (11%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIER---------DIMVKSKCPYIVNLFY 75
+G +G +Y Q V + L E+ D++ K IV
Sbjct: 10 KGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLG 69
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
+ D N + ME+V GG ++L G L E Y ++ V YLH VHRD
Sbjct: 70 TCLDDNTISIFMEFVPGGSISSILNR--FGPLPEPVFCKYTKQILDGVAYLHNNCVVHRD 127
Query: 136 IKPDNMLLSATGHLKLTDFGSATQ-------VDKNGRIKSIVPVGTPEYVAPEVLEWMEG 188
IK +N++L G +KL DFG A + + +KS+ GTP ++APEV+
Sbjct: 128 IKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSM--HGTPYWMAPEVIN---- 181
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLS 248
GY D+WSIG +E+ TG P ++D +++ + S
Sbjct: 182 ---ESGYGRKSDIWSIGCTVFEMATGKPPLA--SMD-RLAAMFYIGAHRGLMPRLPDSFS 235
Query: 249 TAMVNFVQS-LVQKLDARLNMDQVLGHP 275
A ++FV S L + R + Q+L H
Sbjct: 236 AAAIDFVTSCLTRDQHERPSALQLLRHD 263
>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 3.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 3, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK3 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK3 is
highly expressed in the brain. It is implicated in
neuronal plasticity, synapse formation, dendritic spine
morphogenesis, cell cycle progression, neuronal
migration, and apoptosis. Inactivating mutations in the
PAK3 gene cause X-linked non-syndromic mental
retardation, the severity of which depends on the site
of the mutation.
Length = 297
Score = 96.3 bits (239), Expect = 8e-22
Identities = 74/258 (28%), Positives = 125/258 (48%), Gaps = 19/258 (7%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT--IERDIMV--KSKCPYIVNLFYSFQ 78
I QG G +Y + + +K++ ++ P I +I+V ++K P IVN S+
Sbjct: 27 IGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 86
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
+ ++ +MEY+ GG ++ + E + E QA+ +LH +HRDIK
Sbjct: 87 VGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALDFLHSNQVIHRDIKS 143
Query: 139 DNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGS 198
DN+LL G +KLTDFG Q+ +S + VGTP ++APEV+ Y
Sbjct: 144 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTM-VGTPYWMAPEVVT-------RKAYGPK 195
Query: 199 CDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFV-QS 257
D+WS+G+++ E++ G P+ E ++ T T + RLS +F+ +
Sbjct: 196 VDIWSLGIMAIEMVEGEPPYLNEN---PLRALYLIATNGTPELQNPERLSAVFRDFLNRC 252
Query: 258 LVQKLDARLNMDQVLGHP 275
L +D R + ++L HP
Sbjct: 253 LEMDVDRRGSAKELLQHP 270
>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases.
Protein Tyrosine Kinase (PTK) family, catalytic domain.
This PTKc family is part of a larger superfamily that
includes the catalytic domains of protein
serine/threonine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase (PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. They can be classified
into receptor and non-receptor tyr kinases. PTKs play
important roles in many cellular processes including,
lymphocyte activation, epithelium growth and
maintenance, metabolism control, organogenesis
regulation, survival, proliferation, differentiation,
migration, adhesion, motility, and morphogenesis.
Receptor tyr kinases (RTKs) are integral membrane
proteins which contain an extracellular ligand-binding
region, a transmembrane segment, and an intracellular
tyr kinase domain. RTKs are usually activated through
ligand binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain, leading to intracellular signaling.
Some RTKs are orphan receptors with no known ligands.
Non-receptor (or cytoplasmic) tyr kinases are
distributed in different intracellular compartments and
are usually multi-domain proteins containing a catalytic
tyr kinase domain as well as various regulatory domains
such as SH3 and SH2. PTKs are usually autoinhibited and
require a mechanism for activation. In many PTKs, the
phosphorylation of tyr residues in the activation loop
is essential for optimal activity. Aberrant expression
of PTKs is associated with many development
abnormalities and cancers.
Length = 262
Score = 94.9 bits (237), Expect = 1e-21
Identities = 57/218 (26%), Positives = 103/218 (47%), Gaps = 34/218 (15%)
Query: 23 IQQGNFGDIYL--VEEKQSHNTFVMKKVLREKMPNTIERD------IMVKSKCPYIVNLF 74
+ +G FG++Y ++ K T V K L+E +D +M K P +V L
Sbjct: 3 LGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLL 62
Query: 75 -YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARF-------YIYELAQAVQYL 126
++ +Y ++EY+ GGD + L + S K+ + ++A+ ++YL
Sbjct: 63 GVCTEE-EPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYL 121
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKS----IVPVGTPEYVAPEV 182
+VHRD+ N L+ +K++DFG + V + + +P+ ++APE
Sbjct: 122 ASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPI---RWMAPES 178
Query: 183 LEWMEGNHGSDG-YTGSCDLWSIGVVSYELLT-GSTPF 218
L+ DG +T D+WS GV+ +E+ T G+TP+
Sbjct: 179 LK--------DGIFTSKSDVWSFGVLLWEIFTLGATPY 208
>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine
Kinase, Cell Division Cycle 2-like 1. Serine/Threonine
Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
CDC2L1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDC2L1, also
called PITSLRE, exists in different isoforms which are
named using the alias CDK11(p). The CDC2L1 gene produces
two protein products, CDK11(p110) and CDK11(p58). CDC2L1
is also represented by the caspase-processed CDK11(p46).
CDK11(p110), the major isoform, associates with cyclin L
and is expressed throughout the cell cycle. It is
involved in RNA processing and the regulation of
transcription. CDK11(p58) associates with cyclin D3 and
is expressed during the G2/M phase of the cell cycle. It
plays roles in spindle morphogenesis, centrosome
maturation, sister chromatid cohesion, and the
completion of mitosis. CDK11(p46) is formed from the
larger isoforms by caspases during TNFalpha- and
Fas-induced apoptosis. It functions as a downstream
effector kinase in apoptotic signaling pathways and
interacts with eukaryotic initiation factor 3f (eIF3f),
p21-activated kinase (PAK1), and Ran-binding protein
(RanBPM).
Length = 293
Score = 94.6 bits (236), Expect = 3e-21
Identities = 64/218 (29%), Positives = 108/218 (49%), Gaps = 23/218 (10%)
Query: 13 SASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKV----LREKMPNTIERDIMVKSKC- 67
S +++ I++G +G +Y +K++ +KK+ +E P T R+I + K
Sbjct: 3 SVDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQ 62
Query: 68 -PYIVNL----FYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQA 122
P IV + S +++ +Y +MEYV D +L+E + +S+ + + +L
Sbjct: 63 HPNIVTVKEVVVGS--NLDKIYMVMEYVEH-DLKSLMETMKQPF-LQSEVKCLMLQLLSG 118
Query: 123 VQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP-VGTPEYVAPE 181
V +LH +HRD+K N+LL+ G LK+ DFG A + +K V T Y APE
Sbjct: 119 VAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSP--LKPYTQLVVTLWYRAPE 176
Query: 182 VLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFN 219
+L G+ Y+ + D+WS+G + ELLT F
Sbjct: 177 LL------LGAKEYSTAIDMWSVGCIFAELLTKKPLFP 208
>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine
Kinase, Apoptosis signal-regulating kinase.
Serine/threonine kinases (STKs), Apoptosis
signal-regulating kinase (ASK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ASK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Subfamily members
are mitogen-activated protein kinase (MAPK) kinase
kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1,
ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate
MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn
phosphorylate and activate MAPKs during signaling
cascades that are important in mediating cellular
responses to extracellular signals. ASK1 (also called
MAPKKK5) functions in the c-Jun N-terminal kinase (JNK)
and p38 MAPK signaling pathways by directly activating
their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It
plays important roles in cytokine and stress responses,
as well as in reactive oxygen species (ROS)-mediated
cellular responses. ASK1 is implicated in various
diseases mediated by oxidative stress including
inschemic heart disease, hypertension, vessel injury,
brain ischemia, Fanconi anemia, asthma, and pulmonary
edema, among others. ASK2 (also called MAPKKK6)
functions only in a heteromeric complex with ASK1, and
can activate ASK1 by direct phosphorylation. The
function of MAPKKK15 is still unknown.
Length = 268
Score = 94.1 bits (234), Expect = 3e-21
Identities = 62/208 (29%), Positives = 99/208 (47%), Gaps = 28/208 (13%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKV----LREKMPNTIERDIMVKSKCPY--IVNLFYSFQ 78
+G +G +Y + + +K++ R P + +I + S + IV S
Sbjct: 18 KGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQP--LHEEIALHSYLKHRNIVQYLGSDS 75
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLS--ESKARFYIYELAQAVQYLHGLGYVHRDI 136
+ ME V GG LL ++ G L E FY ++ + ++YLH VHRDI
Sbjct: 76 ENGFFKIFMEQVPGGSLSALLRSK-WGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDI 134
Query: 137 KPDNMLLSA-TGHLKLTDFGSATQVDKNGRIKSIVPV-----GTPEYVAPEVLEWMEGNH 190
K DN+L++ +G +K++DFG++ R+ I P GT +Y+APEV++
Sbjct: 135 KGDNVLVNTYSGVVKISDFGTSK------RLAGINPCTETFTGTLQYMAPEVID-----K 183
Query: 191 GSDGYTGSCDLWSIGVVSYELLTGSTPF 218
G GY D+WS+G E+ TG PF
Sbjct: 184 GPRGYGAPADIWSLGCTIVEMATGKPPF 211
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 93.0 bits (232), Expect = 5e-21
Identities = 54/213 (25%), Positives = 98/213 (46%), Gaps = 24/213 (11%)
Query: 19 IKRFIQQGNFGDIY---LVEEKQSHNTFV-MKKVLREKMPNTI-----ERDIMVKSKCPY 69
+ + + +G FG++Y L + V +K + + I E IM K P
Sbjct: 3 LGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDHPN 62
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
+V L + +Y +MEY+ GGD ++ L LS S + ++A+ ++YL
Sbjct: 63 VVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRK-NRPKLSLSDLLSFALQIARGMEYLESK 121
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSI---VPVGTPEYVAPEVLEWM 186
++HRD+ N L+ +K++DFG + + + + +P+ ++APE L
Sbjct: 122 NFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYRKRGGKLPI---RWMAPESL--- 175
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
G +T D+WS GV+ +E+ T G P+
Sbjct: 176 --KEGK--FTSKSDVWSFGVLLWEIFTLGEQPY 204
>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 8. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek8 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek8 contains an
N-terminal kinase catalytic domain and a C-terminal RCC1
(regulator of chromosome condensation) domain. A double
point mutation in Nek8 causes cystic kidney disease in
mice that genetically resembles human autosomal
recessive polycystic kidney disease (ARPKD). Nek8 is
also associated with a rare form of juvenile renal
cystic disease, nephronophthisis type 9. It has been
suggested that a defect in the ciliary localization of
Nek8 contributes to the development of cysts manifested
by these diseases.
Length = 256
Score = 93.0 bits (231), Expect = 6e-21
Identities = 60/264 (22%), Positives = 114/264 (43%), Gaps = 22/264 (8%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMP----NTIERDIMVKSKC--PYIVNLF 74
R + +G FG ++L K ++K++ E+M + + V P I+ +
Sbjct: 6 RVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYY 65
Query: 75 YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
+F + + +MEY GG ++ + + L E + ++ A+ ++H +HR
Sbjct: 66 ENFLEDKALMIVMEYAPGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHR 125
Query: 135 DIKPDNMLLSATGH-LKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSD 193
D+K N+LL +K+ DFG + + + ++ VGTP Y++PE+ E
Sbjct: 126 DLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTV--VGTPCYISPELCE-------GK 176
Query: 194 GYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVN 253
Y D+W++G V YEL + F L I++ P S R S +
Sbjct: 177 PYNQKSDIWALGCVLYELASLKRAFEAANLPALVLKIMS-----GTFAPISDRYSPDLRQ 231
Query: 254 FVQSLVQ-KLDARLNMDQVLGHPV 276
+ S++ R + Q++ P+
Sbjct: 232 LILSMLNLDPSKRPQLSQIMAQPI 255
>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein
Serine/Threonine Kinase, Group II p21-activated kinase.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) subfamily, Group II, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PAK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
Group II PAKs, also called non-conventional PAKs,
include PAK4, PAK5, and PAK6. Group II PAKs contain PBD
(p21-binding domain) and catalytic domains, but lack
other motifs found in group I PAKs, such as an AID
(autoinhibitory domain) and SH3 binding sites. Since
group II PAKs do not contain an obvious AID, they may be
regulated differently from group I PAKs. While group I
PAKs interact with the SH3 containing proteins Nck, Grb2
and PIX, no such binding has been demonstrated for group
II PAKs. Some known substrates of group II PAKs are also
substrates of group I PAKs such as Raf, BAD, LIMK and
GEFH1. Unique group II substrates include MARK/Par-1 and
PDZ-RhoGEF. Group II PAKs play important roles in
filopodia formation, neuron extension, cytoskeletal
organization, and cell survival.
Length = 285
Score = 93.7 bits (233), Expect = 6e-21
Identities = 82/294 (27%), Positives = 141/294 (47%), Gaps = 38/294 (12%)
Query: 12 VSASD--FDIKRFIQ--QGNFGDIYLVEEKQSHNTFVMKKV------LREKMPNTIERDI 61
V D + F++ +G+ G + + +K + +KK+ RE + N E I
Sbjct: 12 VDPGDPRSYLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFN--EVVI 69
Query: 62 MVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGG---DFVTLLENQPHGYLSESKARFYIYE 118
M + P IV ++ S+ + ++ +ME++ GG D VT H ++E +
Sbjct: 70 MRDYQHPNIVEMYSSYLVGDELWVVMEFLEGGALTDIVT------HTRMNEEQIATVCLA 123
Query: 119 LAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKN-GRIKSIVPVGTPEY 177
+ +A+ +LH G +HRDIK D++LL++ G +KL+DFG QV K R KS+ VGTP +
Sbjct: 124 VLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSL--VGTPYW 181
Query: 178 VAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTP-FNYETLDMTYSSILACDTE 236
+APEV+ + Y D+WS+G++ E++ G P FN L ++
Sbjct: 182 MAPEVISRLP-------YGTEVDIWSLGIMVIEMVDGEPPYFNEPPLQ----AMKRIRDN 230
Query: 237 DTVSFPSSIRLSTAMVNFV-QSLVQKLDARLNMDQVLGHPVFDCLDSDPPCIPP 289
+ ++S + +F+ + LV+ R ++L HP F P I P
Sbjct: 231 LPPKLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLNHP-FLAKAGPPSSIVP 283
>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Bypass
UAS Requirement 1 and similar proteins.
Serine/Threonine Kinases (STKs), Bypass UAS Requirement
1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
BUR1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. BUR1, also called
SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK)
that is functionally equivalent to mammalian CDK9. It
associates with the cyclin BUR2. BUR genes were
orginally identified in a genetic screen as factors
involved in general transcription. The BUR1/BUR2 complex
phosphorylates the C-terminal domain of RNA polymerase
II. In addition, this complex regulates histone
modification by phosporylating Rad6 and mediating the
association of the Paf1 complex with chromatin.
Length = 311
Score = 93.9 bits (234), Expect = 7e-21
Identities = 64/218 (29%), Positives = 100/218 (45%), Gaps = 20/218 (9%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDI----MVKSK 66
D++I + +G FG++Y + ++ +KK+L ++ P T R+I +K
Sbjct: 8 RDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHP 67
Query: 67 CPY-IVNLFYSFQD-----MNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELA 120
++++ D VY + Y+ D LLEN P L+ES+ + Y+ +L
Sbjct: 68 NVVPLIDMAVERPDKSKRKRGSVYMVTPYMDH-DLSGLLEN-PSVKLTESQIKCYMLQLL 125
Query: 121 QAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNG-RIKSIVPVGTPEYVA 179
+ + YLH +HRDIK N+L+ G LK+ DFG A D K GT +Y
Sbjct: 126 EGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTN 185
Query: 180 PEVLEWM---EGNHGSDGYTGSCDLWSIGVVSYELLTG 214
V W E G YT + D+W IG V E+ T
Sbjct: 186 LVVTRWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTR 223
>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 2.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 2, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK2 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK2 plays a
role in pro-apoptotic signaling. It is cleaved and
activated by caspases leading to morphological changes
during apoptosis. PAK2 is also activated in response to
a variety of stresses including DNA damage,
hyperosmolarity, serum starvation, and contact
inhibition, and may play a role in coordinating the
stress response. PAK2 also contributes to cancer cell
invasion through a mechanism distinct from that of PAK1.
Length = 296
Score = 93.3 bits (231), Expect = 1e-20
Identities = 73/258 (28%), Positives = 125/258 (48%), Gaps = 19/258 (7%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT--IERDIMVKS--KCPYIVNLFYSFQ 78
I QG G ++ + + +K++ +K P I +I+V K P IVN SF
Sbjct: 27 IGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFL 86
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
+ ++ +MEY+ GG ++ + E++ E QA+++LH +HRDIK
Sbjct: 87 VGDELFVVMEYLAGGSLTDVVTET---CMDEAQIAAVCRECLQALEFLHANQVIHRDIKS 143
Query: 139 DNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGS 198
DN+LL G +KLTDFG Q+ +S + VGTP ++APEV+ Y
Sbjct: 144 DNVLLGMDGSVKLTDFGFCAQITPEQSKRSTM-VGTPYWMAPEVVT-------RKAYGPK 195
Query: 199 CDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFV-QS 257
D+WS+G+++ E++ G P+ E ++ T T + +LS +F+ +
Sbjct: 196 VDIWSLGIMAIEMVEGEPPYLNEN---PLRALYLIATNGTPELQNPEKLSPIFRDFLNRC 252
Query: 258 LVQKLDARLNMDQVLGHP 275
L ++ R + ++L HP
Sbjct: 253 LEMDVEKRGSAKELLQHP 270
>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine
Kinase, Ste20-like kinase. Serine/threonine kinases
(STKs), Ste20-like kinase (SLK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The SLK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. SLK promotes
apoptosis through apoptosis signal-regulating kinase 1
(ASK1) and the mitogen-activated protein kinase (MAPK)
p38. It acts as a MAPK kinase kinase (MAPKKK) by
phosphorylating ASK1, resulting in the phosphorylation
of p38. SLK also plays a role in mediating actin
reorganization. It is part of a microtubule-associated
complex that is targeted at adhesion sites, and is
required in focal adhesion turnover and in regulating
cell migration.
Length = 282
Score = 92.4 bits (229), Expect = 1e-20
Identities = 82/269 (30%), Positives = 131/269 (48%), Gaps = 21/269 (7%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIER-----DIMVKSKCPYIVNLFYSFQDM 80
G FG +Y + K++ KV+ K +E DI+ P IV L +F
Sbjct: 16 GAFGKVYKAQNKET-GVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYE 74
Query: 81 NHVYFIMEYVTGG--DFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
N+++ ++E+ GG D V L +P L+E + R + +A+ YLH +HRD+K
Sbjct: 75 NNLWILIEFCAGGAVDAVMLELERP---LTEPQIRVVCKQTLEALNYLHENKIIHRDLKA 131
Query: 139 DNMLLSATGHLKLTDFG-SATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTG 197
N+L + G +KL DFG SA R S +GTP ++APEV+ M Y
Sbjct: 132 GNILFTLDGDIKLADFGVSAKNTRTIQRRDSF--IGTPYWMAPEVV--MCETSKDRPYDY 187
Query: 198 SCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQS 257
D+WS+G+ E+ P ++E M +A T++ PS R S+ +F++
Sbjct: 188 KADVWSLGITLIEMAQIEPP-HHELNPMRVLLKIAKSEPPTLAQPS--RWSSEFKDFLKK 244
Query: 258 LVQK-LDARLNMDQVLGHPVFDCLDSDPP 285
++K +DAR Q+L HP F ++S+ P
Sbjct: 245 CLEKNVDARWTTTQLLQHP-FVTVNSNKP 272
>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 10.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein Kinase 10 (CDK10) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK10 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK10, also called PISSLRE, is essential for
cell growth and proliferation, and acts through the G2/M
phase of the cell cycle. CDK10 has also been identified
as an important factor in endocrine therapy resistance
in breast cancer. CDK10 silencing increases the
transcription of c-RAF and the activation of the p42/p44
MAPK pathway, which leads to antiestrogen resistance.
Patients who express low levels of CDK10 relapse early
on tamoxifen.
Length = 309
Score = 92.8 bits (231), Expect = 2e-20
Identities = 66/211 (31%), Positives = 106/211 (50%), Gaps = 19/211 (9%)
Query: 13 SASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDIMVKSKC- 67
S ++F+ I +G +G +Y + S +KKV R+ +P + R+I +
Sbjct: 5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLR 64
Query: 68 -PYIVNLFYSF--QDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQ 124
P IV L + ++ ++ +MEY D +LL+N P + SES+ + + +L + +Q
Sbjct: 65 HPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASLLDNMPTPF-SESQVKCLMLQLLRGLQ 122
Query: 125 YLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP-VGTPEYVAPEVL 183
YLH +HRD+K N+LL+ G LK+ DFG A K + P V T Y APE+L
Sbjct: 123 YLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLP--AKPMTPKVVTLWYRAPELL 180
Query: 184 EWMEGNHGSDGYTGSCDLWSIGVVSYELLTG 214
G YT + D+W++G + ELL
Sbjct: 181 ------LGCTTYTTAIDMWAVGCILAELLAH 205
>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 6.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 6, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK6 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK6 may play a role in stress responses
through its activation by the mitogen-activated protein
kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6
is highly expressed in the brain. It is not required for
viability, but together with PAK5, it is required for
normal levels of locomotion and activity, and for
learning and memory. Increased expression of PAK6 is
found in primary and metastatic prostate cancer. PAK6
may play a role in the regulation of motility.
Length = 297
Score = 92.0 bits (228), Expect = 2e-20
Identities = 72/279 (25%), Positives = 136/279 (48%), Gaps = 22/279 (7%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKV-LREKMPNTI---ERDIMVKSKCPYIVNLFYSFQ 78
I +G+ G + + EK S +K + LR++ + E IM + +V ++ S+
Sbjct: 29 IGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYL 88
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
++ +ME++ GG ++ L+E + + QA+ YLH G +HRDIK
Sbjct: 89 VGEELWVLMEFLQGGALTDIVSQT---RLNEEQIATVCESVLQALCYLHSQGVIHRDIKS 145
Query: 139 DNMLLSATGHLKLTDFGSATQVDKN-GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTG 197
D++LL+ G +KL+DFG Q+ K+ + KS+ VGTP ++APEV+ Y
Sbjct: 146 DSILLTLDGRVKLSDFGFCAQISKDVPKRKSL--VGTPYWMAPEVI-------SRTPYGT 196
Query: 198 SCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQS 257
D+WS+G++ E++ G P+ ++ ++ ++ ++S + +F++
Sbjct: 197 EVDIWSLGIMVIEMVDGEPPYFSDS---PVQAMKRLRDSPPPKLKNAHKISPVLRDFLER 253
Query: 258 -LVQKLDARLNMDQVLGHPVFDCLDSDPPCIPPPSQENK 295
L ++ R ++L HP F P C+ P Q+ +
Sbjct: 254 MLTREPQERATAQELLDHP-FLLQTGLPECLVPLIQQYR 291
>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 7.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 7 (CDK7) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK7 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK7
plays essential roles in the cell cycle and in
transcription. It associates with cyclin H and MAT1 and
acts as a CDK-Activating Kinase (CAK) by phosphorylating
and activating cell cycle CDKs (CDK1/2/4/6). In the
brain, it activates CDK5. CDK7 is also a component of
the general transcription factor TFIIH, which
phosphorylates the C-terminal domain (CTD) of RNA
polymerase II when it is bound with unphosphorylated
DNA, as present in the pre-initiation complex. Following
phosphorylation, the CTD dissociates from the DNA which
allows transcription initiation.
Length = 298
Score = 91.9 bits (229), Expect = 2e-20
Identities = 76/313 (24%), Positives = 135/313 (43%), Gaps = 58/313 (18%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKV---LREKMPNTIERD------IMVKSKC 67
++ + + +G + +Y +K++ +KK+ R++ + I ++ + K
Sbjct: 2 YEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKH 61
Query: 68 PYIVNL---FYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQ 124
P I+ L F ++N V+ ME D ++++ L+ + + Y+ + ++
Sbjct: 62 PNIIGLLDVFGHKSNINLVFEFME----TDLEKVIKD-KSIVLTPADIKSYMLMTLRGLE 116
Query: 125 YLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQ-VDKNGRIKSIVPVGTPEYVAPEVL 183
YLH +HRD+KP+N+L+++ G LKL DFG A N ++ V T Y APE+L
Sbjct: 117 YLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTH--QVVTRWYRAPELL 174
Query: 184 EWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF-----NYETLDMTYSSILACDTEDT 238
G+ Y D+WS+G + ELL PF + + L + L TE+
Sbjct: 175 ------FGARHYGVGVDMWSVGCIFAELLLR-VPFLPGDSDIDQLGKIF-EALGTPTEEN 226
Query: 239 ----VSFPSSIRL---------------STAMVNFVQSLVQKLD--ARLNMDQVLGHPVF 277
S P + S ++ +Q L+ L+ R+ Q L HP F
Sbjct: 227 WPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLL-TLNPNKRITARQALEHPYF 285
Query: 278 DCLDSDPPCIPPP 290
+DP PP
Sbjct: 286 ---SNDPAPTPPS 295
>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine
Kinase, Thousand-and-one amino acids proteins.
Serine/threonine kinases (STKs), thousand-and-one amino
acids (TAO) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. They activate the MAPKs, p38 and c-Jun
N-terminal kinase (JNK), by phosphorylating and
activating the respective MAP/ERK kinases (MEKs, also
known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK
signaling cascades are important in mediating cellular
responses to extracellular signals. Vertebrates contain
three TAO subfamily members, named TAO1, TAO2, and TAO3.
Length = 307
Score = 92.2 bits (229), Expect = 2e-20
Identities = 77/266 (28%), Positives = 123/266 (46%), Gaps = 29/266 (10%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKVL------REKMPNTI-ERDIMVKSKCPYIVNL 73
R I G+FG +Y + +++ +KK+ EK + I E + + + P +
Sbjct: 21 REIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEY 80
Query: 74 FYSFQDMNHVYFIMEYVTG--GDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
+ + + +MEY G D + + + +P L E + + Q + YLH
Sbjct: 81 KGCYLREHTAWLVMEYCLGSASDILEVHK-KP---LQEVEIAAICHGALQGLAYLHSHER 136
Query: 132 VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
+HRDIK N+LL+ G +KL DFGSA+ V VGTP ++APEV+ M+
Sbjct: 137 IHRDIKAGNILLTEPGTVKLADFGSASLVSPANSF-----VGTPYWMAPEVILAMDEGQ- 190
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTP-FNYETLDMTYSSILACDTEDTVSFPSSIRLSTA 250
Y G D+WS+G+ EL P FN + Y +A + T+ SS S
Sbjct: 191 ---YDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH--IAQNDSPTL---SSNDWSDY 242
Query: 251 MVNFVQSLVQKL-DARLNMDQVLGHP 275
NFV S +QK+ R + +++L H
Sbjct: 243 FRNFVDSCLQKIPQDRPSSEELLKHR 268
>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase (MAPK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The MAPK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. MAPKs serve as important
mediators of cellular responses to extracellular
signals. They control critical cellular functions
including differentiation, proliferation, migration, and
apoptosis. They are also implicated in the pathogenesis
of many diseases including multiple types of cancer,
stroke, diabetes, and chronic inflammation. Typical MAPK
pathways involve a triple kinase core cascade comprising
of the MAPK, which is phosphorylated and activated by a
MAPK kinase (MAP2K or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAP3K or MKKK). Each cascade is activated either by a
small GTP-binding protein or by an adaptor protein,
which transmits the signal either directly to a MAP3K to
start the triple kinase core cascade or indirectly
through a mediator kinase, a MAP4K. There are three main
typical MAPK subfamilies: Extracellular signal-Regulated
Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38.
Some MAPKs are atypical in that they are not regulated
by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7.
Length = 330
Score = 92.2 bits (230), Expect = 3e-20
Identities = 55/184 (29%), Positives = 94/184 (51%), Gaps = 31/184 (16%)
Query: 46 KKVLREKMPNTIERDIMVKSKCPYIVNLF-----YSFQDMNHVYFIMEYVTGGDFVTLLE 100
K++LRE I+ ++ + I+ L S +D N VY + E + D +++
Sbjct: 44 KRILRE-----IK--LLRHLRHENIIGLLDILRPPSPEDFNDVYIVTELM-ETDLHKVIK 95
Query: 101 NQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV 160
+ L++ ++++Y++ + ++YLH +HRD+KP N+L+++ LK+ DFG A V
Sbjct: 96 SPQP--LTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGV 153
Query: 161 DKNGRIKSIVPVGTPEYV------APEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTG 214
D + K + T EYV APE+L S YT + D+WS+G + ELLT
Sbjct: 154 DPDEDEKGFL---T-EYVVTRWYRAPELL------LSSSRYTKAIDIWSVGCIFAELLTR 203
Query: 215 STPF 218
F
Sbjct: 204 KPLF 207
>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase. Protein kinases (PKs), MAP/ERK
kinase (MEK) subfamily, catalytic (c) domain. PKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine or tyrosine residues on protein
substrates. The MEK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1
and MEK2 are dual-specificity PKs that phosphorylate and
activate the downstream targets, ERK(extracellular
signal-regulated kinase) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1/2, and finally to ERK1/2. The ERK
cascade plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. This cascade has also been
implicated in synaptic plasticity, migration,
morphological determination, and stress response
immunological reactions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1/2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 308
Score = 91.0 bits (226), Expect = 6e-20
Identities = 68/250 (27%), Positives = 114/250 (45%), Gaps = 39/250 (15%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL-----REKMPNTIERDIMVKSKC-- 67
DF+ + GN G + V + S +M + L + + N I R++ V +C
Sbjct: 1 DDFEKLGELGAGNGGVVTKVLHRPSG--LIMARKLIHLEIKPAIRNQIIRELKVLHECNS 58
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
PYIV + +F + ME++ GG +L+ G + E+ + +++ AV L
Sbjct: 59 PYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEN----ILGKISIAV--LR 110
Query: 128 GLGY-------VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP--VGTPEYV 178
GL Y +HRD+KP N+L+++ G +KL DFG + Q+ I S+ VGT Y+
Sbjct: 111 GLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYM 165
Query: 179 APEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDT 238
+PE L +G H YT D+WS+G+ E+ G P ++ +
Sbjct: 166 SPERL---QGTH----YTVQSDIWSLGLSLVEMAIGRYPIPPPD-AKELEAMFGRPVSEG 217
Query: 239 VSFPSSIRLS 248
+ S +S
Sbjct: 218 EAKESHRPVS 227
>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinases, Never In Mitosis gene
A-related kinase 6 and 7. Serine/Threonine Kinases
(STKs), Never In Mitosis gene A (NIMA)-related kinase 6
(Nek6) and Nek7 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The Nek6/7 subfamily is part of a family of 11 different
Neks (Nek1-11) that are involved in cell cycle control.
The Nek family is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek6 and Nek7 are the shortest Neks,
consisting only of the catalytic domain and a very short
N-terminal extension. They show distinct expression
patterns and both appear to be downstream substrates of
Nek9. They are required for mitotic spindle formation
and cytokinesis. They may also be regulators of the p70
ribosomal S6 kinase.
Length = 267
Score = 89.4 bits (222), Expect = 1e-19
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 17/212 (8%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIER-------DIMVKSKCP 68
+F I++ I +G F +Y +KKV +M + R D++ + P
Sbjct: 3 NFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHP 62
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLEN-QPHGYLSESKARF-YIYELAQAVQYL 126
++ SF + N + ++E GD ++++ + L + + Y +L A++++
Sbjct: 63 NVIKYLASFIENNELNIVLELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHM 122
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWM 186
H +HRDIKP N+ ++ATG +KL D G + VGTP Y++PE +
Sbjct: 123 HSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSK-TTAAHSLVGTPYYMSPERI--- 178
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
H + GY D+WS+G + YE+ +PF
Sbjct: 179 ---HEN-GYNFKSDIWSLGCLLYEMAALQSPF 206
>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 1.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 1, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK1 belongs to group I. Group I PAKs contain a PBD
(p21-binding domain) overlapping with an AID
(autoinhibitory domain), a C-terminal catalytic domain,
SH3 binding sites and a non-classical SH3 binding site
for PIX (PAK-interacting exchange factor). PAK1 is
important in the regulation of many cellular processes
including cytoskeletal dynamics, cell motility, growth,
and proliferation. Although PAK1 has been regarded
mainly as a cytosolic protein, recent reports indicate
that PAK1 also exists in significant amounts in the
nucleus, where it is involved in transcription
modulation and in cell cycle regulatory events. PAK1 is
also involved in transformation and tumorigenesis. Its
overexpression, hyperactivation and increased nuclear
accumulation is correlated to breast cancer invasiveness
and progression. Nuclear accumulation is also linked to
tamoxifen resistance in breast cancer cells.
Length = 296
Score = 89.8 bits (222), Expect = 1e-19
Identities = 60/200 (30%), Positives = 103/200 (51%), Gaps = 15/200 (7%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT--IERDIMV--KSKCPYIVNLFYSFQ 78
I QG G +Y + + ++++ ++ P I +I+V ++K P IVN S+
Sbjct: 28 IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
+ ++ +MEY+ GG ++ + E + E QA+++LH +HRDIK
Sbjct: 88 VGDELWVVMEYLAGGSLTDVVTET---CMDEGQIAAVCRECLQALEFLHSNQVIHRDIKS 144
Query: 139 DNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGS 198
DN+LL G +KLTDFG Q+ +S + VGTP ++APEV+ Y
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTM-VGTPYWMAPEVVT-------RKAYGPK 196
Query: 199 CDLWSIGVVSYELLTGSTPF 218
D+WS+G+++ E++ G P+
Sbjct: 197 VDIWSLGIMAIEMIEGEPPY 216
>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 4. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek4 subfamily is
one of a family of 11 different Neks (Nek1-11). The Nek
family is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Neks are involved in the regulation of
downstream processes following the activation of Cdc2,
and many of their functions are cell cycle-related. They
play critical roles in microtubule dynamics during
ciliogenesis and mitosis. Nek4 is highly abundant in the
testis. Its specific function is unknown.
Length = 257
Score = 88.9 bits (220), Expect = 1e-19
Identities = 59/211 (27%), Positives = 108/211 (51%), Gaps = 15/211 (7%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKV------LREKMPNTIERDIMVKSKCPYIVNLF 74
R + +G++G++ LV + +V+KK+ RE+ E ++ + K P IV
Sbjct: 6 RVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYR 65
Query: 75 YSFQDMN-HVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVH 133
S++ + +Y +M + GGD L+ Q L E++ + ++A A+QYLH +H
Sbjct: 66 ESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILH 125
Query: 134 RDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSD 193
RD+K N+ L+ T +K+ D G A ++ + S + +GTP Y++PE+ N+ S
Sbjct: 126 RDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTL-IGTPYYMSPELFSNKPYNYKS- 183
Query: 194 GYTGSCDLWSIGVVSYELLTGSTPFNYETLD 224
D+W++G YE+ T FN + ++
Sbjct: 184 ------DVWALGCCVYEMATLKHAFNAKDMN 208
>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular
signal-Regulated Kinase 1 and 2-like Serine/Threonine
Kinases. Serine/Threonine Kinases (STKs), Extracellular
signal-regulated kinases 1 and 2 (ERK1/2) and Fus3
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. This
ERK1/2-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
the mitogen-activated protein kinases (MAPKs) ERK1,
ERK2, baker's yeast Fus3, and similar proteins. MAPK
pathways are important mediators of cellular responses
to extracellular signals. ERK1/2 activation is
preferentially by mitogenic factors, differentiation
stimuli, and cytokines, through a kinase cascade
involving the MAPK kinases MEK1/2 and a MAPK kinase
kinase from the Raf family. ERK1/2 have numerous
substrates, many of which are nuclear and participate in
transcriptional regulation of many cellular processes.
They regulate cell growth, cell proliferation, and cell
cycle progression from G1 to S phase. Although the
distinct roles of ERK1 and ERK2 have not been fully
determined, it is known that ERK2 can maintain most
functions in the absence of ERK1, and that the deletion
of ERK2 is embryonically lethal. The MAPK, Fus3,
regulates yeast mating processes including
mating-specific gene expression, G1 arrest, mating
projection, and cell fusion.
Length = 336
Score = 90.4 bits (225), Expect = 2e-19
Identities = 60/227 (26%), Positives = 103/227 (45%), Gaps = 37/227 (16%)
Query: 11 NVSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKV------------LREKMPNTIE 58
+V + +I +G +G + K + +KK+ LRE I+
Sbjct: 2 DVG-PRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLRE-----IK 55
Query: 59 RDIMVKSKCPYIVNLF-----YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKAR 113
I+ + K I+ + SF+ N VY + E + D L++ Q LS +
Sbjct: 56 --ILRRFKHENIIGILDIIRPPSFESFNDVYIVQELMET-DLYKLIKTQH---LSNDHIQ 109
Query: 114 FYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP-- 171
+++Y++ + ++Y+H +HRD+KP N+LL+ LK+ DFG A D +
Sbjct: 110 YFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEY 169
Query: 172 VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
V T Y APE++ S GYT + D+WS+G + E+L+ F
Sbjct: 170 VATRWYRAPEIM------LNSKGYTKAIDIWSVGCILAEMLSNRPLF 210
>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 7. Protein kinases (PKs), MAP
kinase kinase 7 (MKK7) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK7 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK7 is a dual-specificity PK that phosphorylates and
activates its downstream target, c-Jun N-terminal kinase
(JNK), on specific threonine and tyrosine residues.
Although MKK7 is capable of dual phosphorylation, it
prefers to phosphorylate the threonine residue of JNK.
Thus, optimal activation of JNK requires both MKK4 (not
included in this subfamily) and MKK7. MKK7 is primarily
activated by cytokines. MKK7 is essential for liver
formation during embryogenesis. It plays roles in G2/M
cell cycle arrest and cell growth. In addition, it is
involved in the control of programmed cell death, which
is crucial in oncogenesis, cancer chemoresistance, and
antagonism to TNFalpha-induced killing, through its
inhibition by Gadd45beta and the subsequent suppression
of the JNK cascade.
Length = 296
Score = 89.0 bits (221), Expect = 3e-19
Identities = 69/244 (28%), Positives = 111/244 (45%), Gaps = 27/244 (11%)
Query: 39 SHNTFVMKKVLREKMPNTIERDIMVKS-KCPYIVNLFYSFQDMNHVYFIMEYV-TGGDFV 96
+ N K++L + D+++KS CPYIV + F + V+ ME + T D +
Sbjct: 51 TGNKEENKRILMD-------LDVVLKSHDCPYIVKCYGYFITDSDVFICMELMSTCLDKL 103
Query: 97 TLLENQPHGYLSESKARFYIYELAQAVQYL---HGLGYVHRDIKPDNMLLSATGHLKLTD 153
P + E + +A+ YL HG+ +HRD+KP N+LL A+G++KL D
Sbjct: 104 LKRIQGP---IPEDILGKMTVAIVKALHYLKEKHGV--IHRDVKPSNILLDASGNVKLCD 158
Query: 154 FG-SATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELL 212
FG S VD + +S G Y+APE + + + Y D+WS+G+ EL
Sbjct: 159 FGISGRLVDSKAKTRS---AGCAAYMAPERI---DPPDPNPKYDIRADVWSLGISLVELA 212
Query: 213 TGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQK-LDARLNMDQV 271
TG P+ + + + E+ S P + S +FV + K R ++
Sbjct: 213 TGQFPYKNCKTEFEVLTKIL--QEEPPSLPPNEGFSPDFCSFVDLCLTKDHRKRPKYREL 270
Query: 272 LGHP 275
L HP
Sbjct: 271 LQHP 274
>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase Like 5.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 5 (CDKL5) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. Mutations in the gene encoding CDKL5,
previously called STK9, are associated with early onset
epilepsy and severe mental retardation [X-linked
infantile spasm syndrome (ISSX) or West syndrome]. In
addition, CDKL5 mutations also sometimes cause a
phenotype similar to Rett syndrome (RTT), a progressive
neurodevelopmental disorder. These pathogenic mutations
are located in the N-terminal portion of the protein
within the kinase domain.
Length = 287
Score = 88.5 bits (219), Expect = 3e-19
Identities = 66/212 (31%), Positives = 105/212 (49%), Gaps = 15/212 (7%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDI-MVKS-KCPYI 70
F++ + +G +G + K++ +KK E++ T R++ M+++ K I
Sbjct: 3 FEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENI 62
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
V L +F+ +Y + EYV + + LLE P+G E K R YIY+L +A+ + H
Sbjct: 63 VELKEAFRRRGKLYLVFEYVEK-NMLELLEEMPNGVPPE-KVRSYIYQLIKAIHWCHKND 120
Query: 131 YVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNH 190
VHRDIKP+N+L+S LKL DFG A + + V T Y +PE+L
Sbjct: 121 IVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLL------ 174
Query: 191 GSDGYTGSCDLWSIGVVSYELLTGSTPFNYET 222
Y + D+WS+G + EL G F E+
Sbjct: 175 -GAPYGKAVDMWSVGCILGELSDGQPLFPGES 205
>gnl|CDD|173667 cd05576, STKc_RPK118_like, Catalytic domain of the Protein
Serine/Threonine Kinases, RPK118 and similar proteins.
Serine/Threonine Kinases (STKs), RPK118-like subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The RPK118-like
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this subfamily show similarity to
human RPK118, which contains an N-terminal Phox homology
(PX) domain, a Microtubule Interacting and Trafficking
(MIT) domain, and a kinase domain containing a long
insert. Also included in the family is human RPK60 (or
ribosomal protein S6 kinase-like 1), which also contains
MIT and kinase domains but lacks a PX domain. RPK118
binds sphingosine kinase, a key enzyme in the synthesis
of sphingosine 1-phosphate (SPP), a lipid messenger
involved in many cellular events. RPK118 may be involved
in transmitting SPP-mediated signaling. RPK118 also
binds the antioxidant peroxiredoxin-3 (PRDX3). RPK118
may be involved in the transport of PRDX3 from the
cytoplasm to its site of function in the mitochondria.
Length = 237
Score = 86.4 bits (214), Expect = 5e-19
Identities = 49/186 (26%), Positives = 91/186 (48%), Gaps = 14/186 (7%)
Query: 31 IYLVEEKQSHNTFVMKKVLREKMPNTIERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYV 90
+ LV + ++ TF++K + + + I+ P +V L + V+ ++++
Sbjct: 9 VLLVMDTRTQQTFILKGLRKSSEYSRERLTIIPHC-VPNMVCLHKYIVSEDSVFLVLQHA 67
Query: 91 TGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLK 150
GG + + + + E + + E+ A+ LH G V RD+ P+N+LL GH++
Sbjct: 68 EGGKLWSHISKFLN--IPEECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQ 125
Query: 151 LTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYE 210
LT F ++V+ + +++ + Y APEV E T +CD WS+G + +E
Sbjct: 126 LTYFSRWSEVEDSCDGEAVENM----YCAPEVGGISE-------ETEACDWWSLGAILFE 174
Query: 211 LLTGST 216
LLTG T
Sbjct: 175 LLTGKT 180
>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Fes subfamily; catalytic (c) domain. Fes subfamily
members include Fes (or Fps), Fer, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes and Fer kinases play roles in haematopoiesis,
inflammation and immunity, growth factor signaling,
cytoskeletal regulation, cell migration and adhesion,
and the regulation of cell-cell interactions. Fes and
Fer show redundancy in their biological functions.
Length = 251
Score = 86.7 bits (215), Expect = 6e-19
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 28/218 (12%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIER------DIMVKSKCPYIVNLFYS 76
I +GNFGD+Y + NT V K R +P ++R +I+ + P IV L
Sbjct: 3 IGKGNFGDVY--KGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGV 60
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDI 136
+Y +ME V GG +T L + L+ K + A ++YL +HRD+
Sbjct: 61 CVQKQPIYIVMELVPGGSLLTFLR-KKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDL 119
Query: 137 KPDNMLLSATGHLKLTDFGSATQVDKNGRIKSI----VPVGTPEYVAPEVLEWMEGNHGS 192
N L+ LK++DFG + + + S +P+ ++ APE L N+G
Sbjct: 120 AARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPI---KWTAPEAL-----NYGR 171
Query: 193 DGYTGSCDLWSIGVVSYELLT-GSTPF----NYETLDM 225
YT D+WS G++ +E + G TP+ N +T +
Sbjct: 172 --YTSESDVWSYGILLWETFSLGDTPYPGMSNQQTRER 207
>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein
Serine/Threonine Kinase, p21-activated kinase 4.
Serine/threonine kinases (STKs), p21-activated kinase
(PAK) 4, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The PAK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. PAKs are Rho family GTPase-regulated kinases
that serve as important mediators in the function of
Cdc42 (cell division cycle 42) and Rac. PAKs from higher
eukaryotes are classified into two groups (I and II),
according to their biochemical and structural features.
PAK4 belongs to group II. Group II PAKs contain a PBD
(p21-binding domain) and a C-terminal catalytic domain,
but do not harbor an AID (autoinhibitory domain) or SH3
binding sites. PAK4 regulates cell morphology and
cytoskeletal organization. It is essential for embryonic
viability and proper neural development. Mice lacking
PAK4 die due to defects in the fetal heart. In addition,
their spinal cord motor neurons showed failure to
differentiate and migrate. PAK4 also plays a role in
cell survival and tumorigenesis. It is overexpressed in
many primary tumors including colon, esophageal, and
mammary tumors. PAK4 has also been implicated in viral
and bacterial infection pathways.
Length = 292
Score = 87.4 bits (216), Expect = 8e-19
Identities = 75/283 (26%), Positives = 137/283 (48%), Gaps = 30/283 (10%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKV-LREKMPNTI---ERDIMVKSKCPYIVNLFYSFQ 78
I +G+ G + + K S +KK+ LR++ + E IM + +V ++ S+
Sbjct: 28 IGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYL 87
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
+ ++ +ME++ GG ++ H ++E + + +A+ LH G +HRDIK
Sbjct: 88 VGDELWVVMEFLEGGALTDIVT---HTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKS 144
Query: 139 DNMLLSATGHLKLTDFGSATQVDKN-GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTG 197
D++LL+ G +KL+DFG QV K R KS+ VGTP ++APE++ + Y
Sbjct: 145 DSILLTHDGRVKLSDFGFCAQVSKEVPRRKSL--VGTPYWMAPELISRLP-------YGP 195
Query: 198 SCDLWSIGVVSYELLTGSTPFNYE----TLDMTYSSILACDTEDTVSFPSSIRLSTAMVN 253
D+WS+G++ E++ G P+ E + M ++ + ++S ++
Sbjct: 196 EVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNL-------PPKLKNLHKVSPSLKG 248
Query: 254 FVQS-LVQKLDARLNMDQVLGHPVFDCLDSDPPCIPPPSQENK 295
F+ LV+ R ++L HP F P CI P ++N+
Sbjct: 249 FLDRLLVRDPAQRATAAELLKHP-FLAKAGPPSCIVPLMRQNR 290
>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine
Kinase, Mitogen-Activated Protein Kinase 15.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 15 (MAPK15) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK15 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. Human MAPK15 is also called
Extracellular signal Regulated Kinase 8 (ERK8) while the
rat protein is called ERK7. ERK7 and ERK8 display both
similar and different biochemical properties. They
autophosphorylate and activate themselves and do not
require upstream activating kinases. ERK7 is
constitutively active and is not affected by
extracellular stimuli whereas ERK8 shows low basal
activity and is activated by DNA-damaging agents. ERK7
and ERK8 also have different substrate profiles. Genome
analysis shows that they are orthologs with similar gene
structures. ERK7 and ERK 8 may be involved in the
signaling of some nuclear receptor transcription
factors. ERK7 regulates hormone-dependent degradation of
estrogen receptor alpha while ERK8 down-regulates the
transcriptional co-activation androgen and
glucocorticoid receptors.
Length = 337
Score = 88.0 bits (219), Expect = 1e-18
Identities = 61/223 (27%), Positives = 104/223 (46%), Gaps = 39/223 (17%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIE-----RDIMVK---SKCP 68
++I + + +G +G ++ ++++ +KK+ + N + R+IM P
Sbjct: 9 YEILQKLGKGAYGIVWKAIDRRTKEVVALKKIF-DAFRNATDAQRTFREIMFLQELGDHP 67
Query: 69 YIVNLFYSFQDMNH--VYFIMEYVTGGDFVTLLENQPH-----GYLSESKARFYIYELAQ 121
IV L + N +Y + EY +E H L + R+ +Y+L +
Sbjct: 68 NIVKLLNVIKAENDKDIYLVFEY---------METDLHAVIRANILEDVHKRYIMYQLLK 118
Query: 122 AVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVA-- 179
A++Y+H +HRD+KP N+LL++ +KL DFG A + + PV T +YVA
Sbjct: 119 ALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPEN-PVLT-DYVATR 176
Query: 180 ----PEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
PE+L GS YT D+WS+G + E+L G F
Sbjct: 177 WYRAPEIL------LGSTRYTKGVDMWSVGCILGEMLLGKPLF 213
>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 2 (CDK2) and CDK3 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK2/3 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK2 is regulated by cyclin E or cyclin A.
Upon activation by cyclin E, it phosphorylates the
retinoblastoma (pRb) protein which activates E2F
mediated transcription and allows cells to move into S
phase. The CDK2/cyclin A complex plays a role in
regulating DNA replication. CDK2, together with CDK4,
also regulates embryonic cell proliferation. Despite
these important roles, mice deleted for the cdk2 gene
are viable and normal except for being sterile. This may
be due to compensation provided by CDK1 (also called
Cdc2), which can also bind cyclin E and drive the G1 to
S phase transition. CDK3 is regulated by cyclin C and it
phosphorylates pRB specifically during the G0/G1
transition. This phosphorylation is required for cells
to exit G0 efficiently and enter the G1 phase.
Length = 284
Score = 86.8 bits (215), Expect = 1e-18
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 28/204 (13%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDI-MVKS-KCPYIVNLFYS 76
I +G +G +Y K + +KK+ E +P+T R+I ++K P IV L
Sbjct: 8 IGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDV 67
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDI 136
N +Y + E++ D ++ P + + Y+++L Q + + H +HRD+
Sbjct: 68 IHTENKLYLVFEFLHQ-DLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDL 126
Query: 137 KPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPE-------YVAPEVLEWMEGN 189
KP N+L++ G +KL DFG A VPV T Y APE+L
Sbjct: 127 KPQNLLINTEGAIKLADFGLARAFG--------VPVRTYTHEVVTLWYRAPEIL------ 172
Query: 190 HGSDGYTGSCDLWSIGVVSYELLT 213
G Y+ + D+WS+G + E++T
Sbjct: 173 LGCKYYSTAVDIWSLGCIFAEMVT 196
>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIB myosin.
Serine/threonine kinases (STKs), class IIIB myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
They may also function as cargo carriers during
light-dependent translocation, in photoreceptor cells,
of proteins such as transducin and arrestin. Class IIIB
myosin is expressed highly in retina. It is also present
in the brain and testis. The human class IIIB myosin
gene maps to a region that overlaps the locus for
Bardet-Biedl syndrome, which is characterized by
dysmorphic extremities, retinal dystrophy, obesity, male
hypogenitalism, and renal abnormalities.
Length = 291
Score = 87.0 bits (215), Expect = 1e-18
Identities = 69/273 (25%), Positives = 129/273 (47%), Gaps = 22/273 (8%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLR--EKMPNTIERD---IMVKSKCPYIV 71
++I I +G +G +Y V K+ + K+L + IE + + P +V
Sbjct: 24 WEIIETIGKGTYGKVYKVTNKKD-GSLAAVKILDPISDVDEEIEAEYNILQSLPNHPNVV 82
Query: 72 NLFYSFQDMNH-----VYFIMEYVTGGDFVTLLEN--QPHGYLSESKARFYIYELAQAVQ 124
+ F + ++ ++E GG L++ L E+ + +Y +Q
Sbjct: 83 KFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQ 142
Query: 125 YLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLE 184
+LH +HRD+K +N+LL+ G +KL DFG + Q+ + R++ VGTP ++APEV+
Sbjct: 143 HLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQL-TSTRLRRNTSVGTPFWMAPEVIA 201
Query: 185 WMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTP-FNYETLDMTYSSILACDTEDTVSFPS 243
+ S Y CD+WS+G+ + EL G P F+ + + + + T+ P
Sbjct: 202 CEQQYDYS--YDARCDVWSLGITAIELGDGDPPLFDMHPVKTLFK--IPRNPPPTLLHPE 257
Query: 244 SIRLSTAMVNFV-QSLVQKLDARLNMDQVLGHP 275
+ + +F+ Q L++ +AR ++ +L HP
Sbjct: 258 --KWCRSFNHFISQCLIKDFEARPSVTHLLEHP 288
>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 2 and 3.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 2 (CDKL2) and CDKL3 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL2 and CDKL3
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL2, also called
p56 KKIAMRE, is expressed in testis, kidney, lung, and
brain. It functions mainly in mature neurons and plays
an important role in learning and memory. Inactivation
of CDKL3, also called NKIAMRE (NKIATRE in rat), by
translocation is associated with mild mental
retardation. It has been reported that CDKL3 is lost in
leukemic cells having a chromosome arm 5q deletion, and
may contribute to the transformed phenotype.
Length = 286
Score = 86.7 bits (215), Expect = 1e-18
Identities = 66/204 (32%), Positives = 110/204 (53%), Gaps = 19/204 (9%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLR---EKMPNTIE-RDI-MVKS-KCPYIVNLFYS 76
+ +G++G + + K++ +KK L +KM I R+I M+K + +VNL
Sbjct: 9 VGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEV 68
Query: 77 FQDMNHVYFIMEYVTGGDFVTL--LENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
F+ +Y + E+V D L LE P+G L ES+ R Y++++ + +++ H +HR
Sbjct: 69 FRRKKRLYLVFEFV---DHTVLDDLEKYPNG-LDESRVRKYLFQILRGIEFCHSHNIIHR 124
Query: 135 DIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
DIKP+N+L+S +G +KL DFG A + G + + V T Y APE+L G
Sbjct: 125 DIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDY-VATRWYRAPELLV------GDTK 177
Query: 195 YTGSCDLWSIGVVSYELLTGSTPF 218
Y + D+W++G + E+LTG F
Sbjct: 178 YGRAVDIWAVGCLVTEMLTGEPLF 201
>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein
Serine/Threonine Kinase, Traf2- and Nck-interacting
kinase. Serine/threonine kinases (STKs), Traf2- and
Nck-interacting kinase (TNIK) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The TNIK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily contain an N-terminal catalytic domain and a
C-terminal citron homology (CNH) regulatory domain,
similar to mitogen-activated protein kinase (MAPK),
kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks
participate in some MAPK signaling pathways by
activating a MAPK kinase kinase (MAPKKK or MAP3K or
MKKK). TNIK is an effector of Rap2, a small GTP-binding
protein from the Ras family. TNIK specifically activates
the c-Jun N-terminal kinase (JNK) pathway and plays a
role in regulating the actin cytoskeleton.
Length = 272
Score = 85.9 bits (212), Expect = 2e-18
Identities = 57/197 (28%), Positives = 96/197 (48%), Gaps = 10/197 (5%)
Query: 81 NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
+ ++ +ME+ G L++N L E + E+ + + +LH +HRDIK N
Sbjct: 82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQN 141
Query: 141 MLLSATGHLKLTDFGSATQVDKN-GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSC 199
+LL+ +KL DFG + Q+D+ GR + +GTP ++APEV+ E + Y
Sbjct: 142 VLLTENAEVKLVDFGVSAQLDRTVGRRNTF--IGTPYWMAPEVIACDENPDAT--YDFKS 197
Query: 200 DLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQS-L 258
DLWS+G+ + E+ G+ P DM L + S + S +F++S L
Sbjct: 198 DLWSLGITAIEMAEGAPPL----CDMHPMRALFLIPRNPAPRLKSKKWSKKFQSFIESCL 253
Query: 259 VQKLDARLNMDQVLGHP 275
V+ R +Q++ HP
Sbjct: 254 VKNHSQRPTTEQLMKHP 270
>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 5. Protein kinases (PKs), MAP
kinase kinase 5 (MKK5) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK5 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK5, also referred to as MEK5, is a
dual-specificity PK that phosphorylates its downstream
target, extracellular signal-regulated kinase 5 (ERK5),
on specific threonine and tyrosine residues. MKK5 is
activated by MEKK2 and MEKK3 in response to mitogenic
and stress stimuli. The ERK5 cascade promotes cell
proliferation, differentiation, neuronal survival, and
neuroprotection. This cascade plays an essential role in
heart development. Mice deficient in either ERK5 or MKK5
die around embryonic day 10 due to cardiovascular
defects including underdevelopment of the myocardium. In
addition, MKK5 is associated with metastasis and
unfavorable prognosis in prostate cancer.
Length = 279
Score = 85.7 bits (212), Expect = 2e-18
Identities = 69/265 (26%), Positives = 113/265 (42%), Gaps = 37/265 (13%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDIM----VKSKC--PYIVNLFYSFQD 79
GN G +Y + +K + + +++ IM + KC PYI+ + +F
Sbjct: 12 GNGGTVYKAYHLLTRRILAVKVIPLDITVE-LQKQIMSELEILYKCDSPYIIGFYGAFFV 70
Query: 80 MNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPD 139
N + E++ GG + + E + + + YL L +HRD+KP
Sbjct: 71 ENRISICTEFMDGGSL------DVYRKIPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPS 124
Query: 140 NMLLSATGHLKLTDFGSATQVDKNGRIKSIVP--VGTPEYVAPEVLEWMEGNHGSDGYTG 197
NML++ G +KL DFG +TQ+ + SI VGT Y+APE + + Y
Sbjct: 125 NMLVNTRGQVKLCDFGVSTQL-----VNSIAKTYVGTNAYMAPERI-------SGEQYGI 172
Query: 198 SCDLWSIGVVSYELLTGSTPFNYETLDMTYSS-----ILACDT-EDTVSFPSSIRLSTAM 251
D+WS+G+ EL G P Y + S +L C ED P + S
Sbjct: 173 HSDVWSLGISFMELALGRFP--YPQIQKNQGSLMPLQLLQCIVDEDPPVLPVG-QFSEKF 229
Query: 252 VNFVQSLVQKL-DARLNMDQVLGHP 275
V+F+ ++K R + ++ HP
Sbjct: 230 VHFITQCMRKQPKERPAPENLMDHP 254
>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine
Kinase, Plant B-type Cyclin-Dependent protein Kinase.
Serine/Threonine Kinases (STKs), Plant B-type
Cyclin-Dependent protein Kinase (CdkB) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CdkB subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. The plant-specific B-type CDKs are expressed
from the late S to the M phase of the cell cycle. They
are characterized by the cyclin binding motif
PPT[A/T]LRE. They play a role in controlling mitosis and
integrating developmental pathways, such as stomata and
leaf development. CdkB has been shown to associate with
both cyclin B, which controls G2/M transition, and
cyclin D, which acts as a mediator in linking
extracellular signals to the cell cycle.
Length = 295
Score = 86.0 bits (213), Expect = 2e-18
Identities = 66/223 (29%), Positives = 96/223 (43%), Gaps = 46/223 (20%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDI----MVKSKCPYIVNLF 74
I +G +G +Y +K + +KK E +P T R+I M+ S+ YIV L
Sbjct: 9 IGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQML-SESIYIVRLL 67
Query: 75 YSFQDMNHV---------YFIMEYVTGG--DFVTLLENQPHGYLSESKARFYIYELAQAV 123
D+ HV Y + EY+ F+ P L + ++Y+L + V
Sbjct: 68 ----DVEHVEEKNGKPSLYLVFEYLDSDLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGV 123
Query: 124 QYLHGLGYVHRDIKPDNMLL-SATGHLKLTDFGSATQVDKNGRIKSIVPVG-------TP 175
+ H G +HRD+KP N+L+ G LK+ D G GR SI PV T
Sbjct: 124 AHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGL-------GRAFSI-PVKSYTHEIVTL 175
Query: 176 EYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
Y APEVL GS Y+ D+WS+G + E+ F
Sbjct: 176 WYRAPEVL------LGSTHYSTPVDIWSVGCIFAEMSRKQPLF 212
>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein
Serine/Threonine Kinases, Mitogen-Activated Protein
Kinase Kinase Kinase Kinase 4 and 6. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6
(or MAP4K6) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MAP4K4/MAP4K6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Members of this subfamily
contain an N-terminal catalytic domain and a C-terminal
citron homology (CNH) regulatory domain. MAP4Ks (or
MAPKKKKs) are involved in MAPK signaling pathways that
are important in mediating cellular responses to
extracellular signals by activating a MAPK kinase kinase
(MAPKKK or MAP3K or MKKK). Each MAPK cascade is
activated either by a small GTP-binding protein or by an
adaptor protein, which transmits the signal either
directly to a MAP3K to start the triple kinase core
cascade or indirectly through a mediator kinase, a
MAP4K. MAP4K4 is also called Nck Interacting kinase
(NIK). It facilitates the activation of the MAPKs,
extracellular signal-regulated kinase (ERK) 1, ERK2, and
c-Jun N-terminal kinase (JNK), by phosphorylating and
activating MEKK1. MAP4K4 plays a role in tumor necrosis
factor (TNF) alpha-induced insulin resistance. MAP4K4
silencing in skeletal muscle cells from type II diabetic
patients restores insulin-mediated glucose uptake.
MAP4K4, through JNK, also plays a broad role in cell
motility, which impacts inflammation, homeostasis, as
well as the invasion and spread of cancer. MAP4K4 is
found to be highly expressed in most tumor cell lines
relative to normal tissue. MAP4K6 (also called MINK for
Misshapen/NIKs-related kinase) is activated after Ras
induction and mediates activation of p38 MAPK. MAP4K6
plays a role in cell cycle arrest, cytoskeleton
organization, cell adhesion, and cell motility.
Length = 282
Score = 85.4 bits (211), Expect = 3e-18
Identities = 56/197 (28%), Positives = 98/197 (49%), Gaps = 10/197 (5%)
Query: 81 NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
+ ++ +ME+ G L++N L E + E+ + + +LH +HRDIK N
Sbjct: 92 DQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQN 151
Query: 141 MLLSATGHLKLTDFGSATQVDKN-GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSC 199
+LL+ +KL DFG + Q+D+ GR + +GTP ++APEV+ E + Y
Sbjct: 152 VLLTENAEVKLVDFGVSAQLDRTVGRRNTF--IGTPYWMAPEVIACDENPDAT--YDYRS 207
Query: 200 DLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQS-L 258
D+WS+G+ + E+ G+ P DM L + S + S ++F++ L
Sbjct: 208 DIWSLGITAIEMAEGAPPL----CDMHPMRALFLIPRNPPPKLKSKKWSKKFIDFIEGCL 263
Query: 259 VQKLDARLNMDQVLGHP 275
V+ +R + +Q+L HP
Sbjct: 264 VKNYLSRPSTEQLLKHP 280
>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase,
p38 Mitogen-Activated Protein Kinase. Serine/Threonine
Kinases (STKs), p38 subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The p38 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. p38 kinases are
mitogen-activated protein kinases (MAPKs), serving as
important mediators of cellular responses to
extracellular signals. They function in the regulation
of the cell cycle, cell development, cell
differentiation, senescence, tumorigenesis, apoptosis,
pain development and pain progression, and immune
responses. p38 kinases are activated by the MAPK kinases
MKK3 and MKK6, which in turn are activated by upstream
MAPK kinase kinases including TAK1, ASK1, and MLK3, in
response to cellular stresses or inflammatory cytokines.
p38 substrates include other protein kinases and factors
that regulate transcription, nuclear export, mRNA
stability and translation. p38 kinases are drug targets
for the inflammatory diseases psoriasis, rheumatoid
arthritis, and chronic pulmonary disease. Vertebrates
contain four isoforms of p38, named alpha, beta, gamma,
and delta, which show varying substrate specificity and
expression patterns. p38alpha and p38beta are
ubiquitously expressed, p38gamma is predominantly found
in skeletal muscle, and p38delta is found in the heart,
lung, testis, pancreas, and small intestine.
Length = 343
Score = 85.8 bits (213), Expect = 5e-18
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 19/143 (13%)
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDI 136
FQD VY + + G D +++ Q LS+ +F +Y++ + ++Y+H G +HRD+
Sbjct: 92 FQD---VYLVTHLM-GADLNNIVKCQK---LSDDHIQFLVYQILRGLKYIHSAGIIHRDL 144
Query: 137 KPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEV-LEWMEGNHGSDGY 195
KP N+ ++ LK+ DFG A D + V T Y APE+ L WM Y
Sbjct: 145 KPSNIAVNEDCELKILDFGLARHTDD----EMTGYVATRWYRAPEIMLNWMH-------Y 193
Query: 196 TGSCDLWSIGVVSYELLTGSTPF 218
+ D+WS+G + ELLTG T F
Sbjct: 194 NQTVDIWSVGCIMAELLTGKTLF 216
>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase
kinase 3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain,
functionally uncharacterized subgroup 1. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The MEKK3-like subfamily is
composed of MEKK3, MEKK2, and related proteins, all
containing an N-terminal PB1 domain, which mediates
oligomerization, and a C-terminal catalytic domain.
MEKK2 and MEKK3 are mitogen-activated protein kinase
(MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks),
proteins that phosphorylate and activate MAPK kinases
(MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate
and activate MAPKs during signaling cascades that are
important in mediating cellular responses to
extracellular signals. MEKK2 and MEKK3 activate MEK5
(also called MKK5), which activates extracellular
signal-regulated kinase 5 (ERK5). The ERK5 cascade plays
roles in promoting cell proliferation, differentiation,
neuronal survival, and neuroprotection. MEKK3 plays an
essential role in embryonic angiogenesis and early heart
development. MEKK2 and MEKK3 can also activate the
MAPKs, c-Jun N-terminal kinase (JNK) and p38, through
their respective MAPKKs.
Length = 264
Score = 84.3 bits (208), Expect = 6e-18
Identities = 74/272 (27%), Positives = 128/272 (47%), Gaps = 34/272 (12%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKV-------LREKMPNTIERDIMVKSKCPY--IV 71
+ + +G FG++YL + + +K+V K N +E +I + + IV
Sbjct: 8 KLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIV 67
Query: 72 NLFYSFQDMNH--VYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
+ +D + +EY+ GG L + +G L+E+ R Y ++ Q V YLH
Sbjct: 68 QYYGCLRDPEEKKLSIFVEYMPGGSIKDQL--KAYGALTENVTRRYTRQILQGVSYLHSN 125
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVD----KNGRIKSIVPVGTPEYVAPEVLEW 185
VHRDIK N+L + G++KL DFG++ ++ IKS+ GTP +++PEV+
Sbjct: 126 MIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSV--TGTPYWMSPEVIS- 182
Query: 186 MEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF-NYETLDMTYSSILACDTEDT-VSFPS 243
+GY D+WS+ E+LT P+ YE + ++I T+ T P
Sbjct: 183 ------GEGYGRKADVWSVACTVVEMLTEKPPWAEYEAM----AAIFKIATQPTKPMLPD 232
Query: 244 SIRLSTAMVNFVQSLVQKLDARLNMDQVLGHP 275
+ S A +F++ + + R + +L HP
Sbjct: 233 GV--SDACRDFLKQIFVEEKRRPTAEFLLRHP 262
>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 7. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek7 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek7 is required
for mitotic spindle formation and cytokinesis. It is
enriched in the centrosome and is critical for
microtubule nucleation. Nek7 is activated by Nek9 during
mitosis, and may regulate the p70 ribosomal S6 kinase.
Length = 267
Score = 84.3 bits (208), Expect = 6e-18
Identities = 65/265 (24%), Positives = 122/265 (46%), Gaps = 28/265 (10%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKV-------LREKMPNTIERDIMVKSKC 67
++F I++ I +G F ++Y +KKV + + E D++ +
Sbjct: 2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNH 61
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLEN--QPHGYLSESKARFYIYELAQAVQY 125
P ++ + SF + N + ++E GD ++++ + + E Y +L A+++
Sbjct: 62 PNVIKYYASFIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEH 121
Query: 126 LHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV-DKNGRIKSIVPVGTPEYVAPEVLE 184
+H +HRDIKP N+ ++ATG +KL D G K S+ VGTP Y++PE +
Sbjct: 122 MHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSL--VGTPYYMSPERIH 179
Query: 185 WMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSS 244
+GY D+WS+G + YE+ +PF + +++ YS + D PS
Sbjct: 180 -------ENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL-YSLCKKIEQCDYPPLPSD 231
Query: 245 IRLSTAMVNFVQSLVQKLDARLNMD 269
++ + L Q ++ +N D
Sbjct: 232 --------HYSEELRQLVNMCINPD 248
>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 3.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK3 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK3 plays an essential role in embryonic angiogenesis
and early heart development. In addition, MEKK3 is
involved in interleukin-1 receptor and Toll-like
receptor 4 signaling. It is also a specific regulator of
the proinflammatory cytokines IL-6 and GM-CSF in some
immune cells. MEKK3 also regulates calcineurin, which
plays a critical role in T cell activation, apoptosis,
skeletal myocyte differentiation, and cardiac
hypertrophy.
Length = 266
Score = 84.4 bits (208), Expect = 6e-18
Identities = 75/272 (27%), Positives = 127/272 (46%), Gaps = 34/272 (12%)
Query: 21 RFIQQGNFGDIYLVEEKQSHNTFVMKKV-LREKMPNT--------IERDIMVKSKCPYIV 71
+ + QG FG +YL + + K+V + P T E ++ + IV
Sbjct: 8 KLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIV 67
Query: 72 NLFYSFQDMNH--VYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
+ +D + MEY+ GG L + +G L+ES R Y ++ + + YLH
Sbjct: 68 QYYGCLRDRAEKTLTIFMEYMPGGSVKDQL--KAYGALTESVTRKYTRQILEGMSYLHSN 125
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVD----KNGRIKSIVPVGTPEYVAPEVLEW 185
VHRDIK N+L + G++KL DFG++ ++ I+S+ GTP +++PEV+
Sbjct: 126 MIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSV--TGTPYWMSPEVIS- 182
Query: 186 MEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF-NYETLDMTYSSILACDTEDT-VSFPS 243
+GY D+WS+G E+LT P+ YE + ++I T+ T PS
Sbjct: 183 ------GEGYGRKADVWSLGCTVVEMLTEKPPWAEYEAM----AAIFKIATQPTNPQLPS 232
Query: 244 SIRLSTAMVNFVQSLVQKLDARLNMDQVLGHP 275
I S +F+ + + R + +++L HP
Sbjct: 233 HI--SEHARDFLGCIFVEARHRPSAEELLRHP 262
>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein
Serine/Threonine Kinase, STK10 or Lymphocyte-oriented
kinase. Serine/threonine kinases (STKs), STK10
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
STK10 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Other names for STK10 include
lymphocyte-oriented kinase (LOK) and Xenopus polo-like
kinase kinase 1 (xPlkk1). STK10 is highly expressed in
lymphocytes and is responsible in regulating leukocyte
function associated antigen (LFA-1)-mediated lymphocyte
adhesion. It plays a role in regulating the CD28
responsive element in T cells, and may also function as
a regulator of polo-like kinase 1 (Plk1), a protein
which is overexpressed in multiple tumor types.
Length = 292
Score = 84.3 bits (208), Expect = 9e-18
Identities = 77/267 (28%), Positives = 129/267 (48%), Gaps = 16/267 (5%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIER-----DIMVKSKCPYIVNLFYSFQDM 80
G FG +Y + K++ KV+ K +E +I+ PYIV L +F
Sbjct: 23 GAFGKVYKAKNKET-GALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWD 81
Query: 81 NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
++ ++E+ GG ++ G L+E + + ++ +A+QYLH + +HRD+K N
Sbjct: 82 GKLWIMIEFCPGGAVDAIMLELDRG-LTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGN 140
Query: 141 MLLSATGHLKLTDFG-SATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSC 199
+LL+ G +KL DFG SA V R S +GTP ++APEV+ M Y
Sbjct: 141 VLLTLDGDIKLADFGVSAKNVKTLQRRDSF--IGTPYWMAPEVV--MCETMKDTPYDYKA 196
Query: 200 DLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLV 259
D+WS+G+ E+ P ++E M +A T+S PS + S +F+++ +
Sbjct: 197 DIWSLGITLIEMAQIEPP-HHELNPMRVLLKIAKSEPPTLSQPS--KWSMEFRDFLKTAL 253
Query: 260 QK-LDARLNMDQVLGHPVFDCLDSDPP 285
K + R + Q+L HP + S+ P
Sbjct: 254 DKHPETRPSAAQLLEHPFVSSVTSNRP 280
>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 6. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Nek6 subfamily is
one of a family of 11 different Neks (Nek1-11) that are
involved in cell cycle control. The Nek family is part
of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Nek6 is required
for the transition from metaphase to anaphase. It also
plays important roles in mitotic spindle formation and
cytokinesis. Activated by Nek9 during mitosis, Nek6
phosphorylates Eg5, a kinesin that is important for
spindle bipolarity. Nek6 localizes to spindle
microtubules during metaphase and anaphase, and to the
midbody during cytokinesis.
Length = 267
Score = 83.5 bits (206), Expect = 1e-17
Identities = 58/221 (26%), Positives = 105/221 (47%), Gaps = 19/221 (8%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIER-------DIMVKSKC 67
++F I++ I +G F ++Y +KKV +M + R D++ +
Sbjct: 2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNH 61
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLE--NQPHGYLSESKARFYIYELAQAVQY 125
P ++ SF + N + ++E GD +++ + + E Y +L AV++
Sbjct: 62 PNVIKYLDSFIEDNELNIVLELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEH 121
Query: 126 LHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV-DKNGRIKSIVPVGTPEYVAPEVLE 184
+H +HRDIKP N+ ++ATG +KL D G K S+ VGTP Y++PE +
Sbjct: 122 MHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSL--VGTPYYMSPERIH 179
Query: 185 WMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDM 225
+GY D+WS+G + YE+ +PF + +++
Sbjct: 180 -------ENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNL 213
>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the
Serine/Threonine Kinase, p38delta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38delta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38delta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38delta, also called MAPK13, is found in
skeletal muscle, heart, lung, testis, pancreas, and
small intestine. It regulates microtubule function by
phosphorylating Tau. It activates the c-jun promoter and
plays a role in G2 cell cycle arrest. It also controls
the degration of c-Myb, which is associated with myeloid
leukemia and poor prognosis in colorectal cancer.
p38delta is the main isoform involved in regulating the
differentiation and apoptosis of keratinocytes.
Length = 342
Score = 85.0 bits (210), Expect = 1e-17
Identities = 66/253 (26%), Positives = 105/253 (41%), Gaps = 46/253 (18%)
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
S + Y +M Y+ T L+ LSE K ++ +Y++ ++Y+H G +HRD
Sbjct: 88 SGDEFQDFYLVMPYMQ-----TDLQKIMGHPLSEDKVQYLVYQMLCGLKYIHSAGIIHRD 142
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEV-LEWMEGNHGSDG 194
+KP N+ ++ LK+ DFG A D + V T Y APEV L WM
Sbjct: 143 LKPGNLAVNEDCELKILDFGLARHADA----EMTGYVVTRWYRAPEVILNWMH------- 191
Query: 195 YTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNF 254
Y + D+WS+G + E+LTG T F + + IL F + A ++
Sbjct: 192 YNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGPEFVQKLE-DKAAKSY 250
Query: 255 VQSLVQ---------------------------KLDARLNMDQVLGHPVFDCL-DSDPPC 286
++SL + +D RL + L HP FD D+D
Sbjct: 251 IKSLPKYPRKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRDADEET 310
Query: 287 IPPPSQENKFHKK 299
P ++ ++K
Sbjct: 311 EQQPYDDSLENEK 323
>gnl|CDD|173756 cd08216, PK_STRAD, Pseudokinase domain of STE20-related kinase
adapter protein. Protein Kinase family, STE20-related
kinase adapter protein (STRAD) subfamily, pseudokinase
domain. The STRAD subfamily is part of a larger
superfamily that includes the catalytic domains of
serine/threonine kinases (STKs), protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
pseudokinase domain shows similarity to protein kinases
but lacks crucial residues for catalytic activity. STRAD
forms a complex with the scaffolding protein MO25, and
the STK, LKB1, resulting in the activation of the
kinase. In the complex, LKB1 phosphorylates and
activates adenosine monophosphate-activated protein
kinases (AMPKs), which regulate cell energy metabolism
and cell polarity. LKB1 is a tumor suppressor linked to
the rare inherited disease, Peutz-Jeghers syndrome,
which is characterized by a predisposition to benign
polyps and hyperpigmentation of the buccal mucosa. There
are two forms of STRAD, alpha and beta, that complex
with LKB1 and MO25. The structure of STRAD-alpha is
available and shows that this protein binds ATP, has an
ordered activation loop, and adopts a closed
conformation typical of fully active protein kinases. It
does not possess activity due to nonconservative
substitutions of essential catalytic residues. ATP
binding enhances the affinity of STRAD for MO25. The
conformation of STRAD-alpha stabilized through ATP and
MO25 may be needed to activate LKB1.
Length = 314
Score = 84.3 bits (209), Expect = 1e-17
Identities = 64/295 (21%), Positives = 121/295 (41%), Gaps = 50/295 (16%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKVLREKMPNT----IERDI-MVKSKC-PYIVNLFYSFQD 79
+ ++L + K ++ +KK+ + ++++I + P I+ SF
Sbjct: 11 EDLMIVHLAKHKPTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIV 70
Query: 80 MNHVYFIMEYVTGGDFVTLLENQ-PHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
+ +Y + + G LL+ P G L E F + ++ A+ Y+H G++HR +K
Sbjct: 71 DSELYVVSPLMAYGSCEDLLKTHFPEG-LPELAIAFILKDVLNALDYIHSKGFIHRSVKA 129
Query: 139 DNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEY-------VAPEVLEWMEGNHG 191
++LLS G + L+ + + K+G+ + V P+ ++PEVL+
Sbjct: 130 SHILLSGDGKVVLSGLRYSVSMIKHGK-RQRVVHDFPKSSVKNLPWLSPEVLQ-----QN 183
Query: 192 SDGYTGSCDLWSIGVVSYELLTGSTPFN--------YETLDMTYSSILACDT-------- 235
GY D++S+G+ + EL G PF E + T +L T
Sbjct: 184 LQGYNEKSDIYSVGITACELANGHVPFKDMPATQMLLEKVRGTVPCLLDKSTYPLYEDSM 243
Query: 236 ------------EDTVSFPSSIRLSTAMVNFVQSLVQK-LDARLNMDQVLGHPVF 277
D+V P + S FV+ +Q+ ++R + Q+L H F
Sbjct: 244 SQSRSSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSFF 298
>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein
Serine/Threonine Kinase, MAP/ERK kinase kinase 2.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2
(MEKK2) subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MEKK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MEKK2 is a mitogen-activated protein kinase
(MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that
phosphorylates and activates the MAPK kinase MEK5 (or
MKK5), which in turn phosphorylates and activates
extracellular signal-regulated kinase 5 (ERK5). The ERK5
cascade plays roles in promoting cell proliferation,
differentiation, neuronal survival, and neuroprotection.
MEKK2 also activates ERK1/2, c-Jun N-terminal kinase
(JNK) and p38 through their respective MAPKKs MEK1/2,
JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays
roles in T cell receptor signaling, immune synapse
formation, cytokine gene expression, as well as in EGF
and FGF receptor signaling.
Length = 265
Score = 83.2 bits (205), Expect = 1e-17
Identities = 62/219 (28%), Positives = 110/219 (50%), Gaps = 26/219 (11%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL-------REKMPNTIERDI-MVKSK 66
+++ + + + QG FG +YL + + +K+V K N +E +I ++K+
Sbjct: 2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNL 61
Query: 67 C-PYIVNLFYSFQDMNH--VYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAV 123
IV + +D + ME++ GG L++ +G L+E+ R Y ++ + V
Sbjct: 62 LHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKS--YGALTENVTRKYTRQILEGV 119
Query: 124 QYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVD----KNGRIKSIVPVGTPEYVA 179
YLH VHRDIK N+L + G++KL DFG++ ++ +KS+ GTP +++
Sbjct: 120 SYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSV--TGTPYWMS 177
Query: 180 PEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
PEV+ +GY D+WS+G E+LT P+
Sbjct: 178 PEVIS-------GEGYGRKADIWSVGCTVVEMLTEKPPW 209
>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent
protein Kinase 1-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 1 (CDK1)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes, plants, and yeasts, as well as CDK2 and
CDK3. CDK1 is also called Cell division control protein
2 (Cdc2) or p34 protein kinase, and is regulated by
cyclins A, B, and E. The CDK1/cyclin A complex controls
G2 phase entry and progression while the CDK1/cyclin B
complex is critical for G2 to M phase transition. CDK2
is regulated by cyclin E or cyclin A. Upon activation by
cyclin E, it phosphorylates the retinoblastoma (pRb)
protein which activates E2F mediated transcription and
allows cells to move into S phase. The CDK2/cyclin A
complex plays a role in regulating DNA replication.
Studies in knockout mice revealed that CDK1 can
compensate for the loss of the cdk2 gene as it can also
bind cyclin E and drive G1 to S phase transition. CDK3
is regulated by cyclin C and it phosphorylates pRB
specifically during the G0/G1 transition. This
phosphorylation is required for cells to exit G0
efficiently and enter the G1 phase.
Length = 283
Score = 83.5 bits (207), Expect = 1e-17
Identities = 64/209 (30%), Positives = 98/209 (46%), Gaps = 28/209 (13%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLR-----EKMPNTIERDI-MVKS-KCPYIVNLFY 75
I +G +G +Y +K + +KK+ R E +P+T R+I ++K P IV L
Sbjct: 7 IGEGTYGVVYKARDKLTGEIVALKKI-RLETEDEGVPSTAIREISLLKELNHPNIVRLLD 65
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
N +Y + E++ D +++ P L + Y+Y+L Q + Y H +HRD
Sbjct: 66 VVHSENKLYLVFEFLDL-DLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRD 124
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSI-VPVGTPE-----YVAPEVLEWMEGN 189
+KP N+L+ G LKL DFG A R + V T E Y APE+L
Sbjct: 125 LKPQNLLIDREGALKLADFGLA-------RAFGVPVRTYTHEVVTLWYRAPEIL------ 171
Query: 190 HGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
GS Y+ D+WSIG + E++ F
Sbjct: 172 LGSRQYSTPVDIWSIGCIFAEMVNRRPLF 200
>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 2.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 2 (TAO2) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
Human TAO2 is also known as prostate-derived Ste20-like
kinase (PSK) and was identified in a screen for
overexpressed RNAs in prostate cancer. TAO2 activates
both p38 and c-Jun N-terminal kinase (JNK), by
phosphorylating and activating the respective MAP/ERK
kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6
and MKK4/MKK7. TAO2 contains a long C-terminal extension
with autoinhibitory segments. It is activated by the
release of this inhibition and the phosphorylation of
its activation loop serine. TAO2 functions as a
regulator of actin cytoskeletal and microtubule
organization. In addition, it regulates the transforming
growth factor-activated kinase 1 (TAK1), which is a
MAPKKK that plays an essential role in the signaling
pathways of tumor necrosis factor (TNF), interleukin 1
(IL-1), and Toll-like receptor (TLR).
Length = 308
Score = 83.9 bits (207), Expect = 1e-17
Identities = 79/280 (28%), Positives = 120/280 (42%), Gaps = 25/280 (8%)
Query: 4 VKELRQKNVSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKV------LREKMPNTI 57
V EL K+ F R I G+FG +Y + ++ +KK+ EK + I
Sbjct: 4 VAELFFKDDPEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDII 63
Query: 58 -ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTL-LENQPHGYLSESKARFY 115
E + K + P + + + + +MEY G L + +P L E +
Sbjct: 64 KEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKP---LQEVEIAAV 120
Query: 116 IYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTP 175
+ Q + YLH +HRD+K N+LLS G +KL DFGSA+ + VGTP
Sbjct: 121 THGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPANXF-----VGTP 175
Query: 176 EYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDT 235
++APEV+ M+ Y G D+WS+G+ EL P +M S L
Sbjct: 176 YWMAPEVILAMDEGQ----YDGKVDVWSLGITCIELAERKPPL----FNMNAMSALYHIA 227
Query: 236 EDTVSFPSSIRLSTAMVNFVQSLVQKL-DARLNMDQVLGH 274
++ S S NFV S +QK+ R + +L H
Sbjct: 228 QNESPALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 267
>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine
Kinase, Extracellular signal-Regulated Kinase 5.
Serine/Threonine Kinases (STKs), Extracellular
signal-Regulated Kinase 5 (ERK5) subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The ERK5 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. ERK5, also called Big MAPK1
(BMK1) or MAPK7, has a unique C-terminal extension,
making it approximately twice as big as other MAPKs.
This extension contains transcriptional activation
capability which is inhibited by the N-terminal half.
ERK5 is activated in response to growth factors and
stress by a cascade that leads to its phosphorylation by
the MAP2K MEK5, which in turn is regulated by the MAP3Ks
MEKK2 and MEKK3. Activated ERK5 phosphorylates its
targets including myocyte enhancer factor 2 (MEF2),
Sap1a, c-Myc, and RSK. It plays a role in EGF-induced
cell proliferation during the G1/S phase transition.
Studies on knockout mice revealed that ERK5 is essential
for cardiovascular development and plays an important
role in angiogenesis. It is also critical for neural
differentiation and survival. The ERK5 pathway has been
implicated in the pathogenesis of many diseases
including cancer, cardiac hypertrophy, and
atherosclerosis.
Length = 334
Score = 83.9 bits (208), Expect = 2e-17
Identities = 68/279 (24%), Positives = 115/279 (41%), Gaps = 58/279 (20%)
Query: 47 KVLRE-KMPNTIE-RDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLE-NQP 103
K+LR K N I RDI+ + D VY +M+ + D ++ +QP
Sbjct: 56 KILRHFKHDNIIAIRDIL-RPPGA----------DFKDVYVVMD-LMESDLHHIIHSDQP 103
Query: 104 HGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKN 163
L+E R+++Y+L + ++Y+H +HRD+KP N+L++ L++ DFG A + +
Sbjct: 104 ---LTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSS 160
Query: 164 GRIKSIVP---VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELL-------- 212
V T Y APE+L + YT + D+WS+G + E+L
Sbjct: 161 PTEHKYFMTEYVATRWYRAPELLLSL------PEYTTAIDMWSVGCIFAEMLGRRQLFPG 214
Query: 213 -------------TGSTP---FNYETLDMTYSSILACDTEDTVSFPSSIRLSTA-MVNFV 255
GS N D I + V + ++ ++ +
Sbjct: 215 KNYVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQPVPWSKIFPKASPEALDLL 274
Query: 256 QSLVQKLDA--RLNMDQVLGHPVFD---CLDSDPPCIPP 289
++Q D R+ ++Q L HP D +P C PP
Sbjct: 275 SQMLQ-FDPEERITVEQALQHPFLAQYHDPDDEPTCPPP 312
>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal
Bck1-like MAP Kinase Kinase Kinases. Serine/threonine
kinases (STKs), mitogen-activated protein kinase (MAPK)
kinase kinase (MAPKKK) subfamily, fungal Bck1-like
proteins, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
MAPKKK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Members of this group include the MAPKKKs
Saccharomyces cerevisiae Bck1 and Schizosaccharomyces
pombe Mkh1, and related proteins. MAPKKKs phosphorylate
and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks),
which in turn phosphorylate and activate MAPKs during
signaling cascades that are important in mediating
cellular responses to extracellular signals. Budding
yeast Bck1 is part of the cell integrity MAPK pathway,
which is activated by stresses and aggressions to the
cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and
the MAPK Slt2 make up the cascade that is important in
the maintenance of cell wall homeostasis. Fission yeast
Mkh1 is involved in MAPK cascades regulating cell
morphology, cell wall integrity, salt resistance, and
filamentous growth in response to stress.
Length = 272
Score = 82.5 bits (204), Expect = 2e-17
Identities = 61/217 (28%), Positives = 99/217 (45%), Gaps = 28/217 (12%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDI-----MVKS-----------K 66
I +G +G +YL + +K+V E R MVK+
Sbjct: 9 IGKGTYGRVYLALNVTTGEMMAVKQV--ELPATIAGRHDSRQKDMVKALRSEIETLKDLD 66
Query: 67 CPYIVNLFYSFQDMNHVYFI-MEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQY 125
IV + F+ I +EYV GG + L +G E RF+ ++ + + Y
Sbjct: 67 HLNIVQ-YLGFETTEEYLSIFLEYVPGGSIGSCLRT--YGRFEEQLVRFFTEQVLEGLAY 123
Query: 126 LHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDK-NGRIKSIVPVGTPEYVAPEVLE 184
LH G +HRD+K DN+L+ A G K++DFG + + D +++ G+ ++APEV+
Sbjct: 124 LHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIH 183
Query: 185 WMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYE 221
S GY+ D+WS+G V E+ G P++ E
Sbjct: 184 -----SYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDE 215
>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine
Kinases, Cyclin-Dependent protein Kinase Like 1 and 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase like 1 (CDKL1) and CDKL4 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDKL1 and CDKL4
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. CDKL1, also called
p42 KKIALRE, is a glial protein that is upregulated in
gliosis. It is present in neuroblastoma and A431 human
carcinoma cells, and may be implicated in neoplastic
transformation. The function of CDKL4 is unknown.
Length = 286
Score = 82.4 bits (204), Expect = 3e-17
Identities = 66/200 (33%), Positives = 100/200 (50%), Gaps = 19/200 (9%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKK-VLREKMPNTIE---RDI-MVKS-KCPYIVNLFYS 76
I +G++G ++ +++ +KK V E P + R+I M+K K P +VNL
Sbjct: 9 IGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEV 68
Query: 77 FQDMNHVYFIMEYVTGGDFVTL--LENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
F+ ++ + EY D L LE P G + E + I++ QAV + H +HR
Sbjct: 69 FRRKRKLHLVFEYC---DHTVLNELEKNPRG-VPEHLIKKIIWQTLQAVNFCHKHNCIHR 124
Query: 135 DIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
D+KP+N+L++ G +KL DFG A + G + V T Y APE+L G
Sbjct: 125 DVKPENILITKQGQIKLCDFGFARILTGPGDDYTDY-VATRWYRAPELLV------GDTQ 177
Query: 195 YTGSCDLWSIGVVSYELLTG 214
Y D+W+IG V ELLTG
Sbjct: 178 YGPPVDVWAIGCVFAELLTG 197
>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like
dual-specificity MAP kinase kinases. Protein kinases
(PKs), MAP kinase kinase(MAPKK) subfamily, fungal
Pek1-like proteins, catalytic (c) domain. PKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MAPKK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein serine/threonine kinases, protein tyrosine
kinases, RIO kinases, aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase. The
mitogen-activated protein (MAP) kinase signaling
pathways are important mediators of cellular responses
to extracellular signals. The pathways involve a triple
kinase core cascade comprising of the MAP kinase (MAPK),
which is phosphorylated and activated by a MAPK kinase
(MAPKK or MKK), which itself is phosphorylated and
activated by a MAPK kinase kinase (MAPKKK or MKKK).
Members of this group include the MAPKKs Pek1/Skh1 from
Schizosaccharomyces pombe and MKK2 from Saccharomyces
cerevisiae, and related proteins. Both fission yeast
Pek1 and baker's yeast MKK2 are components of the cell
integrity MAPK pathway. In fission yeast, Pek1
phosphorylates and activates the MAPK Pmk1/Spm1 and is
regulated by the MAPKKK Mkh1. In baker's yeast, the
pathway involves the MAPK Slt2, the MAPKKs MKK1 and
MKK2, and the MAPKKK Bck1. The cell integrity MAPK
cascade is activated by multiple stress conditions, and
is essential in cell wall construction, morphogenesis,
cytokinesis, and ion homeostasis.
Length = 287
Score = 82.5 bits (204), Expect = 4e-17
Identities = 68/290 (23%), Positives = 115/290 (39%), Gaps = 60/290 (20%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT-----IERDIMVKSKC--PYIVNLFYSF 77
+G G + K + F +K + PN I R++ + C PYIV + +F
Sbjct: 11 EGAGGSVTKCRLKNTGMIFALKTITT--DPNPDLQKQILRELEINKSCKSPYIVKYYGAF 68
Query: 78 QD--MNHVYFIMEYVTGGDFVTLLEN----------QPHGYLSESKARFYIYELAQAVQY 125
D + + MEY GG ++ + + G ++ES + + + Y
Sbjct: 69 LDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAES--------VLKGLSY 120
Query: 126 LHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP--VGTPEYVAPEVL 183
LH +HRDIKP N+LL+ G +KL DFG + ++ + S+ GT Y+APE +
Sbjct: 121 LHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGEL-----VNSLAGTFTGTSFYMAPERI 175
Query: 184 EWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPS 243
+ Y+ + D+WS+G+ E+ PF +
Sbjct: 176 QGKP-------YSITSDVWSLGLTLLEVAQNRFPF----------------PPEGEPPLG 212
Query: 244 SIRLSTAMVN-FVQSLVQKLDARLNMDQVLGHPVFDCLDSDPPCIPPPSQ 292
I L + +VN L + + + + CL+ DP P P
Sbjct: 213 PIELLSYIVNMPNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWD 262
>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR) subfamily; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). The InsR subfamily
is composed of InsR, Insulin-like Growth Factor-1
Receptor (IGF-1R), and similar proteins. PTKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR and
IGF-1R are receptor tyr kinases (RTKs) composed of two
alphabeta heterodimers. Binding of the ligand (insulin,
IGF-1, or IGF-2) to the extracellular alpha subunit
activates the intracellular tyr kinase domain of the
transmembrane beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR and IGF-1R, which share 84%
sequence identity in their kinase domains, display
physiologically distinct yet overlapping functions in
cell growth, differentiation, and metabolism. InsR
activation leads primarily to metabolic effects while
IGF-1R activation stimulates mitogenic pathways. In
cells expressing both receptors, InsR/IGF-1R hybrids are
found together with classical receptors. Both receptors
can interact with common adaptor molecules such as IRS-1
and IRS-2.
Length = 277
Score = 82.0 bits (203), Expect = 4e-17
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 39/233 (16%)
Query: 12 VSASDFDIKRFIQQGNFGDIYL-----VEEKQSHNTFVMKKV-----LREKMPNTIERDI 61
+ + R + QG+FG +Y V + + +K V +RE++ E +
Sbjct: 3 LPREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASV 62
Query: 62 MVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLL------ENQPHGYLSESKARFY 115
M + C ++V L +ME + GD + L G + +F
Sbjct: 63 MKEFNCHHVVRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFI 122
Query: 116 IY--ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV------DKNGRIK 167
E+A + YL +VHRD+ N +++ +K+ DFG + K G K
Sbjct: 123 QMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGG--K 180
Query: 168 SIVPVGTPEYVAPEVLEWMEGNHGSDG-YTGSCDLWSIGVVSYELLT-GSTPF 218
++PV ++APE L DG +T D+WS GVV +E+ T P+
Sbjct: 181 GLLPV---RWMAPESL--------KDGVFTTKSDVWSFGVVLWEMATLAEQPY 222
>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the
Serine/Threonine Kinase, p38gamma Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38gamma subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38gamma subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38gamma, also called MAPK12, is predominantly
expressed in skeletal muscle. Unlike p38alpha and
p38beta, p38gamma is insensitive to pyridinylimidazoles.
It displays an antagonizing function compared to
p38alpha. p38gamma inhibits, while p38alpha stimulates,
c-Jun phosphorylation and AP-1 mediated transcription.
p38gamma also plays a role in the signaling between Ras
and the estrogen receptor and has been implicated to
increase cell invasion and breast cancer progression. In
Xenopus, p38gamma is critical in the meiotic maturation
of oocytes.
Length = 343
Score = 83.1 bits (205), Expect = 5e-17
Identities = 50/144 (34%), Positives = 77/144 (53%), Gaps = 16/144 (11%)
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
S + Y +M ++ G D L++ H LSE + +F +Y++ + ++Y+H G +HRD
Sbjct: 88 SLDRFHDFYLVMPFM-GTDLGKLMK---HEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRD 143
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEV-LEWMEGNHGSDG 194
+KP N+ ++ LK+ DFG A Q D + V T Y APEV L WM
Sbjct: 144 LKPGNLAVNEDCELKILDFGLARQTDS----EMTGYVVTRWYRAPEVILNWMH------- 192
Query: 195 YTGSCDLWSIGVVSYELLTGSTPF 218
YT + D+WS+G + E+LTG F
Sbjct: 193 YTQTVDIWSVGCIMAEMLTGKPLF 216
>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 1.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 1 (TAO1) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO1 is sometimes referred to as prostate-derived
sterile 20-like kinase 2 (PSK2). TAO1 activates the p38
MAPK through direct interaction with and activation of
MEK3. TAO1 is highly expressed in the brain and may play
a role in neuronal apoptosis. TAO1 interacts with the
checkpoint proteins BubR1 and Mad2, and plays an
important role in regulating mitotic progression, which
is required for both chromosome congression and
checkpoint-induced anaphase delay. TAO1 may play a role
in protecting genomic stability.
Length = 317
Score = 81.7 bits (201), Expect = 9e-17
Identities = 80/281 (28%), Positives = 123/281 (43%), Gaps = 27/281 (9%)
Query: 4 VKELRQKNVSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL------REKMPNTI 57
+ EL K F R I G+FG +Y + +++ +KK+ EK + I
Sbjct: 14 IAELFFKEDPEKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDII 73
Query: 58 -ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTL-LENQPHGYLSESKARFY 115
E + + K P + + + + +MEY G L + +P L E +
Sbjct: 74 KEVKFLQRIKHPNSIEYKGCYLREHTAWLVMEYCLGSASDLLEVHKKP---LQEVEIAAI 130
Query: 116 IYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTP 175
+ Q + YLH +HRDIK N+LL+ G +KL DFGSA+ VGTP
Sbjct: 131 THGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASPANSF-----VGTP 185
Query: 176 EYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTP-FNYETLDMTYSSILACD 234
++APEV+ M+ Y G D+WS+G+ EL P FN + Y +A +
Sbjct: 186 YWMAPEVILAMDEGQ----YDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH--IAQN 239
Query: 235 TEDTVSFPSSIRLSTAMVNFVQSLVQKL-DARLNMDQVLGH 274
T+ S S NFV S +QK+ R +++L H
Sbjct: 240 ESPTL---QSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKH 277
>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 10. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 10 (Nek10)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek10 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. No function has yet been ascribed to Nek10.
The gene encoding Nek10 is a putative causative gene for
breast cancer; it is located within a breast cancer
susceptibility loci on chromosome 3p24.
Length = 269
Score = 80.6 bits (199), Expect = 1e-16
Identities = 56/214 (26%), Positives = 98/214 (45%), Gaps = 32/214 (14%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKVLREKMPN----TIERDIMVK---SKC---------PY 69
G FG +Y V +K + + K + P ERD + S+ P
Sbjct: 11 GAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPN 70
Query: 70 IVNLFYSFQDMNHVYFIMEYVTG---GD-FVTLLENQPHGYLSESKARFYIYELAQAVQY 125
IV + +F + + +Y +M+ + G G+ F +L E +E + ++ A++Y
Sbjct: 71 IVRYYKTFLENDRLYIVMDLIEGAPLGEHFNSLKEK--KQRFTEERIWNIFVQMVLALRY 128
Query: 126 LHGLGY-VHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLE 184
LH VHRD+ P+N++L + +TDFG A Q ++ S+ VGT Y PE+++
Sbjct: 129 LHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQPESKLTSV--VGTILYSCPEIVK 186
Query: 185 WMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
++ Y D+W+ G + Y++ T PF
Sbjct: 187 -------NEPYGEKADVWAFGCILYQMCTLQPPF 213
>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 1 from higher
eukaryotes-like. Serine/Threonine Kinases (STKs),
Cyclin-Dependent protein Kinase 1 (CDK1) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. This subfamily is composed of CDK1 from higher
eukaryotes. CDK1 is also called Cell division control
protein 2 (Cdc2) or p34 protein kinase, and is regulated
by cyclins A, B, and E. The CDK1/cyclin A complex
controls G2 phase entry and progression. CDK1/cyclin A2
has also been implicated as an important regulator of S
phase events. The CDK1/cyclin B complex is critical for
G2 to M phase transition. It induces mitosis by
activating nuclear enzymes that regulate chromatin
condensation, nuclear membrane degradation,
mitosis-specific microtubule and cytoskeletal
reorganization. CDK1 also associates with cyclin E and
plays a role in the entry into S phase. CDK1
transcription is stable throughout the cell cycle but is
modulated in some pathological conditions. It may play a
role in regulating apoptosis under these conditions. In
breast cancer cells, HER2 can mediate apoptosis by
inactivating CDK1. Activation of CDK1 may contribute to
HIV-1 induced apoptosis and neuronal apoptosis in
neurodegenerative diseases.
Length = 285
Score = 80.9 bits (200), Expect = 1e-16
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 15/198 (7%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDI-MVKS-KCPYIVNLFYS 76
I +G +G +Y K++ MKK+ E +P+T R+I ++K + P IV L
Sbjct: 8 IGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDV 67
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHG-YLSESKARFYIYELAQAVQYLHGLGYVHRD 135
+ +Y I E+++ D L++ P G Y+ + Y+Y++ Q + + H +HRD
Sbjct: 68 LMQESRLYLIFEFLSM-DLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRD 126
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
+KP N+L+ G +KL DFG A R+ + V T Y APEVL GS Y
Sbjct: 127 LKPQNLLIDNKGVIKLADFGLARAFGIPVRVYT-HEVVTLWYRAPEVL------LGSPRY 179
Query: 196 TGSCDLWSIGVVSYELLT 213
+ D+WSIG + E+ T
Sbjct: 180 STPVDIWSIGTIFAEMAT 197
>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the
Serine/Threonine Kinase, p38alpha Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38alpha subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38alpha subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38alpha, also called MAPK14, is expressed in
most tissues and is the major isoform involved in the
immune and inflammatory response. It is the central p38
MAPK involved in myogenesis. It plays a role in
regulating cell cycle check-point transition and
promoting cell differentiation. p38alpha also regulates
cell proliferation and death through crosstalk with the
JNK pathway. Its substrates include MAPK activated
protein kinase 2 (MK2), MK5, and the transcription
factors ATF2 and Mitf.
Length = 345
Score = 81.2 bits (200), Expect = 2e-16
Identities = 47/144 (32%), Positives = 76/144 (52%), Gaps = 16/144 (11%)
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
S ++ N VY + ++ G D +++ Q L++ +F IY++ + ++Y+H +HRD
Sbjct: 90 SLEEFNDVYLVT-HLMGADLNNIVKCQK---LTDDHVQFLIYQILRGLKYIHSADIIHRD 145
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEV-LEWMEGNHGSDG 194
+KP N+ ++ LK+ DFG A D + V T Y APE+ L WM
Sbjct: 146 LKPSNLAVNEDCELKILDFGLARHTDD----EMTGYVATRWYRAPEIMLNWMH------- 194
Query: 195 YTGSCDLWSIGVVSYELLTGSTPF 218
Y + D+WS+G + ELLTG T F
Sbjct: 195 YNQTVDIWSVGCIMAELLTGRTLF 218
>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase,
MAPK/MAK/MRK Overlapping Kinase. Serine/Threonine
Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The MOK
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MOK, also called Renal tumor antigen 1
(RAGE-1), is widely expressed and is enriched in testis,
kidney, lung, and brain. It is expressed in
approximately 50% of renal cell carcinomas (RCC) and is
a potential target for immunotherapy. MOK is stabilized
by its association with the HSP90 molecular chaperone.
It is induced by the transcription factor Cdx2 and may
be involved in regulating intestinal epithelial
development and differentiation.
Length = 282
Score = 80.0 bits (198), Expect = 2e-16
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 20/121 (16%)
Query: 98 LLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSA 157
L++ + L E + + Y+Y+L +++ ++H G HRDIKP+N+L+ LKL DFGS
Sbjct: 89 LIKGRKR-PLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSC 146
Query: 158 TQVDKNGRIKSIVP----VGTPEYVAPEVLEWMEGNHGSDGYTG-SCDLWSIGVVSYELL 212
+ S P + T Y APE L +DGY G D+W++G V +E+L
Sbjct: 147 RGIY------SKPPYTEYISTRWYRAPECLL-------TDGYYGPKMDIWAVGCVFFEIL 193
Query: 213 T 213
+
Sbjct: 194 S 194
>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like
Serine/Threonine Kinases. Serine/Threonine Kinases
(STKs), PCTAIRE-like subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The PCTAIRE-like subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein STKs, protein tyrosine kinases, RIO
kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Members of this
subfamily share sequence similarity with
Cyclin-Dependent Kinases (CDKs), which belong to a large
family of STKs that are regulated by their cognate
cyclins. Together, CDKs and cyclins are involved in the
control of cell-cycle progression, transcription, and
neuronal function. The association of PCTAIRE-like
proteins with cyclins has not been widely studied,
although PFTAIRE-1 has been shown to function as a CDK
which is regulated by cyclin D3 as well as the
membrane-associated cyclin Y. PCTAIRE-like proteins show
unusual expression patterns with high levels in
post-mitotic tissues, suggesting that they may be
involved in regulating post-mitotic cellular events.
Length = 291
Score = 79.7 bits (197), Expect = 3e-16
Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 29/166 (17%)
Query: 85 FIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLS 144
+ EY+ D +++ G LS R ++++L + + Y H +HRD+KP N+L+S
Sbjct: 80 LVFEYLDT-DLKQYMDDCGGG-LSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLIS 137
Query: 145 ATGHLKLTDFGSATQVDKNGRIKSIVP-------VGTPEYVAPEVLEWMEGNHGSDGYTG 197
G LKL DFG A R KS VP V T Y P+VL GS Y+
Sbjct: 138 ERGELKLADFGLA-------RAKS-VPSKTYSNEVVTLWYRPPDVL------LGSTEYST 183
Query: 198 SCDLWSIGVVSYELLTGSTPF-----NYETLDMTYSSILACDTEDT 238
S D+W +G + YE+ TG F + L + +L TE+T
Sbjct: 184 SLDMWGVGCIFYEMATGRPLFPGSTDVEDQLHKIF-RVLGTPTEET 228
>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein
Serine/Threonine Kinase, Class IIIA myosin.
Serine/threonine kinases (STKs), class IIIA myosin
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
class III myosin subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Class III myosins are motor
proteins containing an N-terminal kinase catalytic
domain and a C-terminal actin-binding domain. Class III
myosins may play an important role in maintaining the
structural integrity of photoreceptor cell microvilli.
In photoreceptor cells, they may also function as cargo
carriers during light-dependent translocation of
proteins such as transducin and arrestin. Class IIIA
myosin is highly expressed in retina and in inner ear
hair cells. It is localized to the distal ends of
actin-bundled structures. Mutations in human myosin IIIA
are responsible for progressive nonsyndromic hearing
loss. Human myosin IIIA possesses ATPase and kinase
activities, and the ability to move actin filaments in a
motility assay. It may function as a cellular
transporter capable of moving along actin bundles in
sensory cells.
Length = 286
Score = 78.9 bits (194), Expect = 5e-16
Identities = 57/214 (26%), Positives = 109/214 (50%), Gaps = 16/214 (7%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLR--EKMPNTIERD---IMVKSKCPYIV 71
++I I +G +G ++ V K++ + +K +L + IE + + S P +V
Sbjct: 20 WEIIETIGKGTYGKVFKVLNKKNGSKAAVK-ILDPIHDIDEEIEAEYNILKALSDHPNVV 78
Query: 72 NLF--YSFQDM---NHVYFIMEYVTGGDFVTLLEN--QPHGYLSESKARFYIYELAQAVQ 124
+ Y +D+ + ++ ++E GG L++ + + E + ++E +Q
Sbjct: 79 KFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQ 138
Query: 125 YLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLE 184
+LH +HRD+K +N+LL+ G +KL DFG + Q+ + R++ VGTP ++APEV+
Sbjct: 139 HLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQL-TSTRLRRNTSVGTPFWMAPEVIA 197
Query: 185 WMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
+ + Y CD+WS+G+ + EL G P
Sbjct: 198 CEQQLDST--YDARCDVWSLGITAIELGDGDPPL 229
>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed.
Length = 932
Score = 81.7 bits (202), Expect = 8e-16
Identities = 69/242 (28%), Positives = 117/242 (48%), Gaps = 54/242 (22%)
Query: 17 FDIKRFIQQGNFGDIYL--------------VEEKQSHNTFVMKKVLREKMPNTIERDIM 62
+DI R I +G G++YL + E S N + K+ LRE I D++
Sbjct: 4 YDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREA---KIAADLI 60
Query: 63 VKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLEN--------QPHGYLSESKARF 114
P IV ++ D + VY+ M Y+ G +LL++ + + A
Sbjct: 61 ----HPGIVPVYSICSDGDPVYYTMPYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFL 116
Query: 115 YIY-ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSAT--------QVDKNGR 165
I+ ++ ++Y+H G +HRD+KPDN+LL G + + D+G+A +D +
Sbjct: 117 SIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVD 176
Query: 166 IKSI------VP---VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGST 216
++I +P VGTP+Y+APE L G S+ S D++++GV+ Y++LT S
Sbjct: 177 ERNICYSSMTIPGKIVGTPDYMAPERL---LGVPASE----STDIYALGVILYQMLTLSF 229
Query: 217 PF 218
P+
Sbjct: 230 PY 231
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 79.4 bits (196), Expect = 1e-15
Identities = 62/232 (26%), Positives = 101/232 (43%), Gaps = 34/232 (14%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDIMVKSKCPYIVNLFY 75
D + R I G FG ++ V + + K+V +KMPN + + K + L +
Sbjct: 1 DVEPDRPIGYGAFGVVWSVTDPRDG-----KRVALKKMPNVFQNLVSCKRVFRELKMLCF 55
Query: 76 SFQD----------------MNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYEL 119
D +Y + E + ++ QP LS + ++Y++
Sbjct: 56 FKHDNVLSALDILQPPHIDPFEEIYVVTELMQSDLHKIIVSPQP---LSSDHVKVFLYQI 112
Query: 120 AQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVA 179
+ ++YLH G +HRDIKP N+L+++ LK+ DFG A + + V T Y A
Sbjct: 113 LRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRA 172
Query: 180 PEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFN----YETLDMTY 227
PE+L GS YT + D+WS+G + ELL F + LD+
Sbjct: 173 PEILM------GSRHYTSAVDIWSVGCIFAELLGRRILFQAQSPIQQLDLIT 218
>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein
Serine/Threonine Kinase, Thousand-and-one amino acids 3.
Serine/threonine kinases (STKs), thousand-and-one amino
acids 3 (TAO3) subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The TAO subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. TAO proteins possess mitogen-activated protein
kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK)
activity. MAPK signaling cascades are important in
mediating cellular responses to extracellular signals.
TAO3 is also known as JIK (JNK inhibitory kinase) or KFC
(kinase from chicken). It specifically activates c-Jun
N-terminal kinase (JNK), presumably by phosphorylating
and activating MKK4/MKK7. In Saccharomyces cerevisiae,
TAO3 is a component of the RAM (regulation of Ace2p
activity and cellular morphogenesis) signaling pathway.
TAO3 is upregulated in retinal ganglion cells after
axotomy, and may play a role in apoptosis.
Length = 313
Score = 77.8 bits (191), Expect = 2e-15
Identities = 62/214 (28%), Positives = 95/214 (44%), Gaps = 21/214 (9%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKV------LREKMPNTI-ERDIMVKSKCPYIVNLFY 75
I G+FG +Y ++ +KK+ EK + I E + + K P +
Sbjct: 29 IGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKG 88
Query: 76 SFQDMNHVYFIMEYVTGGDFVTL-LENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
+ + + +MEY G L + +P L E + + Q + YLH +HR
Sbjct: 89 CYLKEHTAWLVMEYCLGSASDLLEVHKKP---LQEVEIAAITHGALQGLAYLHSHNMIHR 145
Query: 135 DIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
DIK N+LL+ G +KL DFGSA++ VGTP ++APEV+ M+
Sbjct: 146 DIKAGNILLTEPGQVKLADFGSASKSSPANSF-----VGTPYWMAPEVILAMDEGQ---- 196
Query: 195 YTGSCDLWSIGVVSYELLTGSTP-FNYETLDMTY 227
Y G D+WS+G+ EL P FN + Y
Sbjct: 197 YDGKVDVWSLGITCIELAERKPPLFNMNAMSALY 230
>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 2. Protein kinases (PKs),
MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK2 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK2, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK2,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients.
Length = 331
Score = 77.8 bits (191), Expect = 2e-15
Identities = 66/218 (30%), Positives = 103/218 (47%), Gaps = 38/218 (17%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMP---NTIERDIMVKSKC--PYI 70
DF+ + GN G + V+ K S K + E P N I R++ V +C PYI
Sbjct: 6 DFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 65
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYEL--AQAVQYLHG 128
V + +F + ME++ GG +L+ +A+ E+ ++ L G
Sbjct: 66 VGFYGAFYSDGEISICMEHMDGGSLDQVLK----------EAKRIPEEILGKVSIAVLRG 115
Query: 129 LGYV-------HRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP--VGTPEYVA 179
L Y+ HRD+KP N+L+++ G +KL DFG + Q+ I S+ VGT Y++
Sbjct: 116 LAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYMS 170
Query: 180 PEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTP 217
PE L +G H Y+ D+WS+G+ EL G P
Sbjct: 171 PERL---QGTH----YSVQSDIWSMGLSLVELAIGRYP 201
>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein
Kinase, MAP kinase kinase 4. Protein kinases (PKs), MAP
kinase kinase 4 (MKK4) subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MKK4 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising of the MAP
kinase (MAPK), which is phosphorylated and activated by
a MAPK kinase (MAPKK or MKK), which itself is
phosphorylated and activated by a MAPK kinase kinase
(MAPKKK or MKKK). MKK4 is a dual-specificity PK that
phosphorylates and activates the downstream targets,
c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific
threonine and tyrosine residues. JNK and p38 are
collectively known as stress-activated MAPKs, as they
are activated in response to a variety of environmental
stresses and pro-inflammatory cytokines. Their
activation is associated with the induction of cell
death. Mice deficient in MKK4 die during embryogenesis
and display anemia, severe liver hemorrhage, and
abnormal hepatogenesis. MKK4 may also play roles in the
immune system and in cardiac hypertrophy. It plays a
major role in cancer as a tumor and metastasis
suppressor. Under certain conditions, MKK4 is
pro-oncogenic.
Length = 288
Score = 77.0 bits (190), Expect = 2e-15
Identities = 74/290 (25%), Positives = 115/290 (39%), Gaps = 46/290 (15%)
Query: 13 SASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERD----------IM 62
+A D I +G FG + + K S T + K +R E++ +M
Sbjct: 2 TAEDLKDLGEIGRGAFGTVNKMLHKPS-GTIMAVKRIRS---TVDEKEQKRLLMDLDVVM 57
Query: 63 VKSKCPYIVNLFYSFQDMNHVYFIMEYVTGG--DFVTLLENQPHGYLSESKARFYIYELA 120
S CPYIV + + + ME + F + + E
Sbjct: 58 RSSDCPYIVKFYGALFREGDCWICMELMDISLDKFYKYVYEVLKSVIPEEILGKIAVATV 117
Query: 121 QAVQYL-HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSI---VPVGTPE 176
+A+ YL L +HRD+KP N+LL G++KL DFG + Q+ + SI G
Sbjct: 118 KALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQL-----VDSIAKTRDAGCRP 172
Query: 177 YVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFN-----YETLDMTYSS-- 229
Y+APE ++ DGY D+WS+G+ YE+ TG P+ ++ L
Sbjct: 173 YMAPERID----PSARDGYDVRSDVWSLGITLYEVATGKFPYPKWNSVFDQLTQVVKGDP 228
Query: 230 -ILACDTEDTVSFPSSIRLSTAMVNFVQS-LVQKLDARLNMDQVLGHPVF 277
IL+ E S VNF+ L++ R ++L HP
Sbjct: 229 PILSNSEEREFSPS--------FVNFINLCLIKDESKRPKYKELLEHPFI 270
>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase,
Fes. Protein Tyrosine Kinase (PTK) family; Fes (or Fps)
kinase subfamily; catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fes
subfamily proteins are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal region with FCH
(Fes/Fer/CIP4 homology) and coiled-coil domains,
followed by a SH2 domain, and a C-terminal catalytic
domain. The genes for Fes (feline sarcoma) and Fps
(Fujinami poultry sarcoma) were first isolated from
tumor-causing retroviruses. The viral oncogenes encode
chimeric Fes proteins consisting of Gag sequences at the
N-termini, resulting in unregulated tyr kinase activity.
Fes kinase is expressed in myeloid, vascular
endothelial, epithelial, and neuronal cells. It plays
important roles in cell growth and differentiation,
angiogenesis, inflammation and immunity, and
cytoskeletal regulation. A recent study implicates Fes
kinase as a tumor suppressor in colorectal cancer.
Length = 252
Score = 76.2 bits (187), Expect = 2e-15
Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 27/209 (12%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI------ERDIMVKSKCPYIVNLFYS 76
I +GNFG+++ ++ NT V K RE +P + E I+ + P IV L
Sbjct: 3 IGRGNFGEVF-SGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGV 61
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQA-VQYLHGLGYVHRD 135
+Y +ME V GGDF+T L + G + K + E A A ++YL +HRD
Sbjct: 62 CTQKQPIYIVMELVQGGDFLTFLRTE--GPRLKVKELIQMVENAAAGMEYLESKHCIHRD 119
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVD-----KNGRIKSIVPVGTPEYVAPEVLEWMEGNH 190
+ N L++ LK++DFG + + + G +K I PV ++ APE L N+
Sbjct: 120 LAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQI-PV---KWTAPEAL-----NY 170
Query: 191 GSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
G Y+ D+WS G++ +E + G+ P+
Sbjct: 171 GR--YSSESDVWSFGILLWEAFSLGAVPY 197
>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine
Kinase, Fungal Cyclin-Dependent protein Kinase Pho85.
Serine/Threonine Kinases (STKs), Pho85 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The Pho85 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. Pho85 is a
multifunctional Cyclin-Dependent protein Kinase (CDK) in
yeast. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. Pho85 is regulated
by 10 different cyclins (Pcls) and plays a role in G1
progression, cell polarity, phosphate and glycogen
metabolism, gene expression, and in signaling changes in
the environment. It is not essential for yeast viability
and is the functional homolog of mammalian CDK5, which
plays a role in central nervous system development.
Length = 284
Score = 76.8 bits (189), Expect = 3e-15
Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 30/208 (14%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLR----EKMPNTIERDI--MVKSKCPYIVNLFYSFQ 78
+G + +Y + + V K + E P+T R+I M + K IV L
Sbjct: 10 EGTYATVYKGRNRTT-GEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIH 68
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPH-GYLSESKARFYIYELAQAVQYLHGLGYVHRDIK 137
N + + EY+ D ++ G L + + + Y+L + + + H +HRD+K
Sbjct: 69 TENKLMLVFEYMDK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLK 127
Query: 138 PDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPE-------YVAPEVLEWMEGNH 190
P N+L++ G LKL DFG A +PV T Y AP+VL
Sbjct: 128 PQNLLINKRGELKLADFGLARAFG--------IPVNTFSNEVVTLWYRAPDVL------L 173
Query: 191 GSDGYTGSCDLWSIGVVSYELLTGSTPF 218
GS Y+ S D+WS+G + E++TG F
Sbjct: 174 GSRTYSTSIDIWSVGCIMAEMITGRPLF 201
>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional.
Length = 478
Score = 78.9 bits (194), Expect = 3e-15
Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 10/152 (6%)
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLEN--QPHGYLSESKARFYIYELAQAVQYLH 127
IV F F+ + + IMEY +GGD ++ + H E + Y++ A+ +H
Sbjct: 127 IVKHFDDFKSDDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVH 186
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP-VGTPEYVAPEVLEWM 186
+HRD+K N+ L TG +KL DFG + Q + + GTP Y+APE+ E
Sbjct: 187 SRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWE-- 244
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
Y+ D+WS+GV+ YELLT PF
Sbjct: 245 -----RKRYSKKADMWSLGVILYELLTLHRPF 271
>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the
Serine/Threonine Kinase, p38beta Mitogen-Activated
Protein Kinase. Serine/Threonine Kinases (STKs),
p38beta subfamily, catalytic (c) domain. STKs catalyze
the transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
p38beta subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. p38 kinases are mitogen-activated protein
kinases (MAPKs), serving as important mediators of
cellular responses to extracellular signals. They are
activated by the MAPK kinases MKK3 and MKK6, which in
turn are activated by upstream MAPK kinase kinases
including TAK1, ASK1, and MLK3, in response to cellular
stresses or inflammatory cytokines. Vertebrates contain
four isoforms of p38, named alpha, beta, gamma, and
delta. p38beta, also called MAPK11, is widely expressed
in tissues and shows more similarity with p38alpha than
with the other isoforms. Both are sensitive to
pyridinylimidazoles and share some common substrates
such as MAPK activated protein kinase 2 (MK2) and the
transcription factors ATF2, c-Fos and, ELK-1. p38beta is
involved in regulating the activation of the
cyclooxygenase-2 promoter and the expression of
TGFbeta-induced alpha-smooth muscle cell actin.
Length = 343
Score = 77.4 bits (190), Expect = 4e-15
Identities = 48/144 (33%), Positives = 75/144 (52%), Gaps = 16/144 (11%)
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
S ++ N VY + + G D +++ Q LS+ +F IY+L + ++Y+H G +HRD
Sbjct: 88 SIENFNEVYLVTN-LMGADLNNIVKCQK---LSDEHVQFLIYQLLRGLKYIHSAGIIHRD 143
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEV-LEWMEGNHGSDG 194
+KP N+ ++ L++ DFG A Q D + V T Y APE+ L WM
Sbjct: 144 LKPSNVAVNEDCELRILDFGLARQADD----EMTGYVATRWYRAPEIMLNWMH------- 192
Query: 195 YTGSCDLWSIGVVSYELLTGSTPF 218
Y + D+WS+G + ELL G F
Sbjct: 193 YNQTVDIWSVGCIMAELLKGKALF 216
>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-2 is also
referred to as ALS2CR7 (amyotrophic lateral sclerosis 2
(juvenile) chromosome region candidate 7). It may be
associated with amyotrophic lateral sclerosis 2 (ALS2),
an autosomal recessive form of juvenile ALS. The
function of PFTAIRE-2 is not yet known.
Length = 291
Score = 76.2 bits (187), Expect = 4e-15
Identities = 54/165 (32%), Positives = 80/165 (48%), Gaps = 27/165 (16%)
Query: 85 FIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLS 144
F+ EY+ D + P G L R ++++L + + Y+HG +HRD+KP N+L+S
Sbjct: 80 FVFEYMHT-DLAQYMIQHPGG-LHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLIS 137
Query: 145 ATGHLKLTDFGSATQVDKNGRIKSI------VPVGTPEYVAPEVLEWMEGNHGSDGYTGS 198
G LKL DFG A R KSI V T Y P+VL G+ Y+ +
Sbjct: 138 YLGELKLADFGLA-------RAKSIPSQTYSSEVVTLWYRPPDVL------LGATDYSSA 184
Query: 199 CDLWSIGVVSYELLTGSTPFN-----YETLDMTYSSILACDTEDT 238
D+W G + E+L G F +E L+ + ++L TEDT
Sbjct: 185 LDIWGAGCIFIEMLQGQPAFPGVSDVFEQLEKIW-TVLGVPTEDT 228
>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TEY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TEY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TEY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. There are two subtypes
of plant MAPKs based on the conserved phosphorylation
motif present in the activation loop, TEY and TDY. This
subfamily represents the TEY subtype and is further
subdivided into three groups (A, B, and C). Group A is
represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4
(NtNTF4), among others. They are mostly involved in
environmental and hormonal responses. AtMPK3 and AtMPK6
are also key regulators for stomatal development and
patterning. Group B is represented by AtMPK4, AtMPK13,
and NtNTF6, among others. They may be involved in both
cell division and environmental stress response. AtMPK4
also participates in regulating innate immunity. Group C
is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa
MAPK4 (OsMAPK4), among others. They may also be involved
in stress responses. AtMPK1 and AtMPK2 are activated
following mechanical injury and in the presence of
stress chemicals such as jasmonic acid, hydrogen
peroxide and abscisic acid. OsMAPK4 is also called
OsMSRMK3 for Multiple Stress-Responsive MAPK3.
Length = 337
Score = 76.6 bits (189), Expect = 5e-15
Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 50/247 (20%)
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLE-NQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
+F D+ VY +M+ D ++ +Q LS+ ++++Y+L + ++Y+H +HR
Sbjct: 80 AFNDVYIVYELMD----TDLHQIIRSSQT---LSDDHCQYFLYQLLRGLKYIHSANVLHR 132
Query: 135 DIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
D+KP N+LL+A LK+ DFG A + G + V T Y APE+L
Sbjct: 133 DLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVV-TRWYRAPELL------LNCSE 185
Query: 195 YTGSCDLWSIGVVSYELLTGSTPF------NYETLDMTYSSILACDTEDTVSFPSS---- 244
YT + D+WS+G + ELL F + L +L +E+ + F +
Sbjct: 186 YTTAIDVWSVGCIFAELLGRKPLFPGKDYVHQLKLIT---ELLGSPSEEDLGFIRNEKAR 242
Query: 245 --IRL--STAMVNFVQ----------SLVQKL-----DARLNMDQVLGHPVFDCL---DS 282
IR T +F + L++K+ R+ +++ L HP L
Sbjct: 243 RYIRSLPYTPRQSFARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDPSD 302
Query: 283 DPPCIPP 289
+P C P
Sbjct: 303 EPVCQTP 309
>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 5.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 5 (CDK5) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK5 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK5
is unusual in that it is regulated by non-cyclin
proteins, p35 and p39. It is highly expressed in the
nervous system and is critical in normal neural
development and function. It plays a role in neuronal
migration and differentiation, and is also important in
synaptic plasticity and learning. CDK5 also participates
in protecting against cell death and promoting
angiogenesis. Impaired CDK5 activity is implicated in
Alzheimer's disease, amyotrophic lateral sclerosis,
Parkinson's disease, Huntington's disease and acute
neuronal injury.
Length = 284
Score = 75.5 bits (186), Expect = 6e-15
Identities = 68/286 (23%), Positives = 123/286 (43%), Gaps = 40/286 (13%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDI-MVKS-KCPYIVNLFYS 76
I +G +G ++ + +++H +K+V E +P++ R+I ++K K IV L+
Sbjct: 8 IGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDV 67
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDI 136
+ + EY D ++ +G + + ++++L + + + H +HRD+
Sbjct: 68 LHSDKKLTLVFEYCDQ-DLKKYFDSC-NGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDL 125
Query: 137 KPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYT 196
KP N+L++ G LKL DFG A R S V T Y P+VL G+ Y+
Sbjct: 126 KPQNLLINKNGELKLADFGLARAFGIPVRCYS-AEVVTLWYRPPDVL------FGAKLYS 178
Query: 197 GSCDLWSIGVVSYELLTGSTPF--NYETLD--MTYSSILACDTEDT-------------V 239
S D+WS G + EL P + D +L TE++
Sbjct: 179 TSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEESWPGVSKLPDYKPYP 238
Query: 240 SFPSSIRLSTAMVNFVQS---LVQKL-----DARLNMDQVLGHPVF 277
+P++ L + + L+Q L R++ ++ L HP F
Sbjct: 239 MYPATTSLVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF 284
>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine
Kinases, Mitogen-Activated Protein Kinases 4 and 6.
Serine/Threonine Kinases (STKs), Mitogen-Activated
Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAPK4/6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. MAPKs are
important mediators of cellular responses to
extracellular signals. MAPK4 is also called ERK4 or
p63MAPK, while MAPK6 is also called ERK3 or p97MAPK.
MAPK4 and MAPK6 are atypical MAPKs that are not
regulated by MAP2Ks. MAPK6 is expressed ubiquitously
with highest amounts in brain and skeletal muscle. It
may be involved in the control of cell differentiation
by negatively regulating cell cycle progression in
certain conditions. It may also play a role in
glucose-induced insulin secretion. MAPK6 and MAPK4
cooperate to regulate the activity of MAPK-activated
protein kinase 5 (MK5), leading to its relocation to the
cytoplasm and exclusion from the nucleus. The MAPK6/MK5
and MAPK4/MK5 pathways may play critical roles in
embryonic and post-natal development.
Length = 342
Score = 75.6 bits (186), Expect = 1e-14
Identities = 53/165 (32%), Positives = 84/165 (50%), Gaps = 17/165 (10%)
Query: 80 MNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPD 139
+N VY + EY+ D +LE G LSE AR ++Y+L + ++Y+H +HRD+KP
Sbjct: 88 LNSVYIVQEYMET-DLANVLE---QGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPA 143
Query: 140 NMLLSA-TGHLKLTDFGSATQVDKNGRIKSIVPVG--TPEYVAPEVLEWMEGNHGSDGYT 196
N+ ++ LK+ DFG A VD + K + G T Y +P +L + N+ YT
Sbjct: 144 NVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLL--LSPNN----YT 197
Query: 197 GSCDLWSIGVVSYELLTGSTPFN----YETLDMTYSSILACDTED 237
+ D+W+ G + E+LTG F E + + S+ ED
Sbjct: 198 KAIDMWAAGCIFAEMLTGKPLFAGAHELEQMQLILESVPVVREED 242
>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 12.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 12 (CDK12) subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK12 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDK12 is also called Cdc2-related protein
kinase 7 (CRK7) or Cdc2-related kinase
arginine/serine-rich (CrkRS). It is a unique CDK that
contains an arginine/serine-rich (RS) domain, which is
predominantly found in splicing factors. CDK12 is widely
expressed in tissues. It interacts with cyclins L1 and
L2, and plays roles in regulating transcription and
alternative splicing.
Length = 302
Score = 74.8 bits (184), Expect = 1e-14
Identities = 73/249 (29%), Positives = 110/249 (44%), Gaps = 27/249 (10%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDIMVKSKC--PYI 70
FDI I +G +G +Y +K + +KKV +E P T R+I + + I
Sbjct: 9 FDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNI 68
Query: 71 VNLF---------YSF-QDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELA 120
VNL F +D Y + EY+ D + LLE+ + SE + ++ +L
Sbjct: 69 VNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLESGLVHF-SEDHIKSFMKQLL 126
Query: 121 QAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAP 180
+ + Y H ++HRDIK N+LL+ G +KL DFG A + V T Y P
Sbjct: 127 EGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPP 186
Query: 181 EVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF--NYETLDMTYSSILACDTEDT 238
E+L G + Y + D+WS G + EL T F N E + S L C +
Sbjct: 187 ELL------LGEERYGPAIDVWSCGCILGELFTKKPIFQANQELAQLELISRL-CGSPCP 239
Query: 239 VSFPSSIRL 247
+P I+L
Sbjct: 240 AVWPDVIKL 248
>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein
Kinase, MAP/ERK Kinase 1. Protein kinases (PKs),
MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain.
PKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine or tyrosine residues on
protein substrates. The MEK subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MEK1 is a dual-specificity PK that phosphorylates and
activates the downstream targets, extracellular
signal-regulated kinase (ERK) 1 and ERK2, on specific
threonine and tyrosine residues. The ERK cascade starts
with extracellular signals including growth factors,
hormones, and neurotransmitters, which act through
receptors and ion channels to initiate intracellular
signaling that leads to the activation at the MAPKKK
(Raf-1 or MOS) level, which leads to the transmission of
signals to MEK1, and finally to ERK1/2. The ERK cascade
plays an important role in cell proliferation,
differentiation, oncogenic transformation, and cell
cycle control, as well as in apoptosis and cell survival
under certain conditions. Gain-of-function mutations in
genes encoding ERK cascade proteins, including MEK1,
cause cardiofaciocutaneous (CFC) syndrome, a condition
leading to multiple congenital anomalies and mental
retardation in patients. MEK1 also plays a role in cell
cycle control.
Length = 333
Score = 75.1 bits (184), Expect = 2e-14
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 26/212 (12%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMP---NTIERDIMVKSKC--PYI 70
DF+ + GN G ++ V K S K + E P N I R++ V +C PYI
Sbjct: 6 DFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYI 65
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYL---H 127
V + +F + ME++ GG +L+ G + E + + + YL H
Sbjct: 66 VGFYGAFYSDGEISICMEHMDGGSLDQVLKKA--GRIPEQILGKVSIAVIKGLTYLREKH 123
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP--VGTPEYVAPEVLEW 185
+ +HRD+KP N+L+++ G +KL DFG + Q+ I S+ VGT Y++PE L
Sbjct: 124 KI--MHRDVKPSNILVNSRGEIKLCDFGVSGQL-----IDSMANSFVGTRSYMSPERL-- 174
Query: 186 MEGNHGSDGYTGSCDLWSIGVVSYELLTGSTP 217
+G H Y+ D+WS+G+ E+ G P
Sbjct: 175 -QGTH----YSVQSDIWSMGLSLVEMAIGRYP 201
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 76.7 bits (189), Expect = 3e-14
Identities = 68/286 (23%), Positives = 142/286 (49%), Gaps = 13/286 (4%)
Query: 357 KRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLR 416
+ + +L ++L EA+ +E+L ++ + L+ ++ LQ++L + + E EI LR
Sbjct: 252 EEELEELQEELEEAEKEIEEL---KSELEELREELEELQEELLELKEEIEELEGEISLLR 308
Query: 417 QEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEV--LR 474
+ + + E++L L + ++E ++ EL+E+E L + ++ L E +KE L
Sbjct: 309 ERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLS 368
Query: 475 GELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALA 534
LEE + + +++ + E EL++ + E E+L+E+L L + L+ +E L
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428
Query: 535 TAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSG-ISEKYEKDRKTLLELKSAKE 593
+ L+ E + L+ +E +++++E+ R++E+ ++E E+ ++ EL S +
Sbjct: 429 ELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEA 488
Query: 594 RLE------LEVRGYKLDLESTRRELETNKDQTIEL-RAKSKLEKA 632
RL+ +G + LE+ L EL + K K E A
Sbjct: 489 RLDRLEAEQRASQGVRAVLEALESGLPGVYGPVAELIKVKEKYETA 534
Score = 75.5 bits (186), Expect = 8e-14
Identities = 69/300 (23%), Positives = 137/300 (45%), Gaps = 14/300 (4%)
Query: 357 KRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLR 416
+ L+L LA+ K ++L + L+ ++ LQ++ L + E+EI+ L+
Sbjct: 221 ELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEE-------LEEAEKEIEELK 273
Query: 417 QEMVKKESDLVATSSDLVATRHELEEVRSELKE-KENLEKTDDRKLEVCEVSKELEVLRG 475
E+ + +L +L+ + E+EE+ E+ +E LE+ ++ E+ E +EL+
Sbjct: 274 SELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIE 333
Query: 476 ELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQ-TENEALKEKLTSLEQELKVSEEALA 534
L+E+ + ++ Q + E A EL++ E L+E +L +EL E LA
Sbjct: 334 ALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELA 393
Query: 535 TAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKER 594
+N L+ RE ++L +E + + +E E+ + + E+ + L EL E
Sbjct: 394 EIRNELEELKREIESLEERLERLSERLED---LKEELKELEAELEELQTELEELNEELEE 450
Query: 595 LELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLV 654
LE ++ + L+ REL +++ R + +L E L + E + + + L
Sbjct: 451 LEEQLEELRDRLKELERELAELQEE--LQRLEKELSSLEARLDRLEAEQRASQGVRAVLE 508
Score = 75.5 bits (186), Expect = 8e-14
Identities = 73/354 (20%), Positives = 133/354 (37%), Gaps = 24/354 (6%)
Query: 437 RHELEEVRSELKEK-ENLEKTDDRKLEVCEVSKELEVLRGE---------LEEQKTATKQ 486
+ EE +L+ ENLE+ +D E+ K+LE L + L+ + +
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEEL---EKQLEKLERQAEKAERYQELKAELRELEL 227
Query: 487 W--KKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKL 544
+ KE EL + + E E L+E+L E+E++ + L + L+
Sbjct: 228 ALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQ 287
Query: 545 REHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERL--ELEVRGY 602
E L IE ++ E+ R+ E + + E+ + L ELK E L ELE R
Sbjct: 288 EELLELKEEIEELEGEISLLRERLEE---LENELEELEERLEELKEKIEALKEELEERET 344
Query: 603 KLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQ 662
L+ + +E + + LE+ E +REE +L+ + L +
Sbjct: 345 LLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNEL----E 400
Query: 663 PAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERES 722
+ ++E E L + E + LK + LE+L+ E
Sbjct: 401 ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD 460
Query: 723 KLRSANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQL 776
+L+ + E + ++ LE ++ E+ + Q +L L
Sbjct: 461 RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRAVLEALESGL 514
Score = 73.2 bits (180), Expect = 4e-13
Identities = 83/373 (22%), Positives = 152/373 (40%), Gaps = 29/373 (7%)
Query: 420 VKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEE 479
+ + +A +L EL E+ ++L++ E E+ + EL L LEE
Sbjct: 656 SRNKRSSLAQKRELKELEEELAELEAQLEKLEE---------ELKSLKNELRSLEDLLEE 706
Query: 480 QKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNS 539
+ ++ ++ + +E A EL+Q Q+ E L+E+L LE+EL+ +E L +
Sbjct: 707 LRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEE 766
Query: 540 LDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEV 599
L+S L IE ++++ + + E+ E+ + L E + + LE E+
Sbjct: 767 LESLEEALAKLKEEIEELEEKRQA----------LQEELEELEEELEEAERRLDALEREL 816
Query: 600 RGYKLDLESTRRELETNKDQTIELRAK-SKLEKAEGELTTVREENKKLKQGKIRLVYSLF 658
+ E +E+E +++ EL K +LE+ EL EE K+ + L
Sbjct: 817 ESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELE 876
Query: 659 KDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYT 718
+ + + + E+ E EL + E +LK E + LE L+
Sbjct: 877 DELKELEEEKEELEEELRELESELAELK-------EEIEKLRERLEELEAKLERLEVELP 929
Query: 719 ERESKLRSANE--IIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQL 776
E E +L E + E E +I LE + +E E +++ + L E L
Sbjct: 930 ELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDL 989
Query: 777 RKKNNDILSHDNE 789
+ +L E
Sbjct: 990 EEAKEKLLEVIEE 1002
Score = 71.7 bits (176), Expect = 1e-12
Identities = 65/284 (22%), Positives = 132/284 (46%), Gaps = 23/284 (8%)
Query: 357 KRDRLQLLQQLAEAKASLE----DLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEI 412
K + L L E + LE L + + AL+ ++ LQ L L + EEE+
Sbjct: 694 KNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEEL 753
Query: 413 DRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEV 472
+ L++ + + E +L + L + E+EE+ + + + +ELE
Sbjct: 754 EELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQ----------------EELEE 797
Query: 473 LRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEA 532
L ELEE + +++ + R E+++ + E E L+EKL LE+EL+ E+
Sbjct: 798 LEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKE 857
Query: 533 LATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAK 592
L + L+ E + L + ++ +++E E+ +RE + + + ++ + +L+
Sbjct: 858 LEELKEELEELEAEKEELEDELKELEEEKEELEEELRE---LESELAELKEEIEKLRERL 914
Query: 593 ERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGEL 636
E LE ++ +++L ELE + T+E + ++E+ E E+
Sbjct: 915 EELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEI 958
Score = 69.4 bits (170), Expect = 5e-12
Identities = 70/296 (23%), Positives = 143/296 (48%), Gaps = 19/296 (6%)
Query: 383 RVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEE 442
+ L+AQ+ L+++L S + L E+ ++ LR+++ + E L +L A ELE+
Sbjct: 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ 734
Query: 443 VRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAV 502
++S L+E E + + +LE + + LE L ELE + A + K++ + ++R A
Sbjct: 735 LQSRLEELEEELEELEEELEELQ--ERLEELEEELESLEEALAKLKEEIEELEEKRQALQ 792
Query: 503 AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEME 562
EL++ + E E + +L +LE+EL+ E+ + ++ E + L ++ +++E+E
Sbjct: 793 EELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELE 852
Query: 563 QSAVRVREMSGISEKYEKDRKTL-LELKSAKERLELEVRGYKLDLESTRRELETNKDQTI 621
+ + E+ E+ E +++ L ELK +E E +LE RELE+ +
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKE--------ELEEELRELESELAE-- 902
Query: 622 ELRAKSKLEKAEGELTTVREENKKLK---QGKIRLVYSLFKDPQPAQSKLEKAEGE 674
K ++EK L + + ++L+ + ++D + + E E
Sbjct: 903 ---LKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLE 955
Score = 64.4 bits (157), Expect = 2e-10
Identities = 60/262 (22%), Positives = 120/262 (45%), Gaps = 11/262 (4%)
Query: 357 KRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLR 416
+ + +L ++L E + LE L + + L+ ++ L++ + L + EEE++
Sbjct: 750 EEELEELQERLEELEEELESLEEALAK---LKEEIEELEEKRQALQEELEELEEELEEAE 806
Query: 417 QEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGE 476
+ + E +L + E+EE+ E++E E EK D+ + E+ E+ KELE L+ E
Sbjct: 807 RRLDALERELESLEQRRERLEQEIEELEEEIEELE--EKLDELEEELEELEKELEELKEE 864
Query: 477 LEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKL----TSLEQELKVSEEA 532
LEE + ++ + + + +E+ EL++ ++E LKE++ LE+ E
Sbjct: 865 LEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERL 924
Query: 533 LATAQNSLDSKLREHQA-LSNTIESMQKEMEQSAVRVREM-SGISEKYEKDRKTLLELKS 590
+ E++ L +E + +E+ + + E+YE+ + ELKS
Sbjct: 925 EVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKS 984
Query: 591 AKERLELEVRGYKLDLESTRRE 612
+E LE +E +E
Sbjct: 985 QREDLEEAKEKLLEVIEELDKE 1006
Score = 60.5 bits (147), Expect = 3e-09
Identities = 64/304 (21%), Positives = 122/304 (40%), Gaps = 31/304 (10%)
Query: 351 EDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEE 410
++ + + QL +L E + LE+L + ++ + L + L ++ E
Sbjct: 723 RELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIE 782
Query: 411 EIDRLRQEMVKKESDLVATSSDLVATRHELE-EVRSELKEKENLEKTDDRKLEVCEVSKE 469
E++ RQ + ++ +L + LE E+ S + +E LE+ +E
Sbjct: 783 ELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQE----------IEE 832
Query: 470 LEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVS 529
LE ELEE+ + +E EL++ + E E L+ + LE ELK
Sbjct: 833 LEEEIEELEEKLDELE----------EELEELEKELEELKEELEELEAEKEELEDELKEL 882
Query: 530 EEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELK 589
EE + L E L IE +++ +E+ ++ + + E++ + E
Sbjct: 883 EEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDT 942
Query: 590 SAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQG 649
E LE E+ LE L + LRA + E+ E ++ + + L++
Sbjct: 943 LETE-LEREIE----RLEEEIEALG-----PVNLRAIEEYEEVEERYEELKSQREDLEEA 992
Query: 650 KIRL 653
K +L
Sbjct: 993 KEKL 996
Score = 42.4 bits (100), Expect = 0.001
Identities = 53/237 (22%), Positives = 104/237 (43%), Gaps = 22/237 (9%)
Query: 570 EMSGISEKYEKDRKTLLELKSAKE---RLELEVRGYKLDLESTRRELETN---KDQTIEL 623
E +G+S+ E+ + +L+ +E RLE + + LE R+ E ++ EL
Sbjct: 163 EAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAEL 222
Query: 624 RAKS------KLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTT 677
R KL++ EL + EE +L++ L ++ + A+ ++E+ + EL
Sbjct: 223 RELELALLLAKLKELRKELEELEEELSRLEEELEELQ----EELEEAEKEIEELKSELEE 278
Query: 678 VREENKKLKVSFF-FTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYET 736
+REE ++L+ E L + + LE+L++ E E +L E I +
Sbjct: 279 LREELEELQEELLELKEEIEEL-EGEISLLRERLEELENELEELEERLEELKEKIEALKE 337
Query: 737 KITALESTMTRSESYCKEMVEYLETLQKNNDILSHD----NEQLRKKNNDILSHDNE 789
++ E+ + E E+ E E L++ L + E LR++ ++ + E
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAE 394
>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine
Kinases, Anaplastic Lymphoma Kinase and Leukocyte
Tyrosine Kinase. Protein Tyrosine Kinase (PTK) family;
Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine
(tyr) Kinase (LTK); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to tyr
residues in protein substrates. ALK and LTK are orphan
receptor tyr kinases (RTKs) whose ligands are not yet
well-defined. RTKs contain an extracellular
ligand-binding domain, a transmembrane region, and an
intracellular tyr kinase domain. They are usually
activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. ALK appears
to play an important role in mammalian neural
development as well as visceral muscle differentiation
in Drosophila. ALK is aberrantly expressed as fusion
proteins, due to chromosomal translocations, in about
60% of anaplastic large cell lymphomas (ALCLs). ALK
fusion proteins are also found in rare cases of diffuse
large B cell lymphomas (DLBCLs). LTK is mainly expressed
in B lymphocytes and neuronal tissues. It is important
in cell proliferation and survival. Transgenic mice
expressing TLK display retarded growth and high
mortality rate. In addition, a polymorphism in mouse and
human LTK is implicated in the pathogenesis of systemic
lupus erythematosus.
Length = 277
Score = 72.9 bits (179), Expect = 5e-14
Identities = 68/248 (27%), Positives = 102/248 (41%), Gaps = 47/248 (18%)
Query: 10 KNVSASDFDIKRFIQQGNFGDIY--LVEEKQSHNT--FVMKKVLREKMPNTIERD----- 60
V + R + G FG++Y L + V K L E E D
Sbjct: 1 PEVPRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEA 60
Query: 61 -IMVKSKCPYIVNLF-YSFQDMNHVYFI-MEYVTGGDFVTLL-ENQPH----GYLSESKA 112
IM K IV L SF+ FI +E + GGD + L EN+P L+
Sbjct: 61 LIMSKFNHQNIVRLIGVSFE--RLPRFILLELMAGGDLKSFLRENRPRPERPSSLTMKDL 118
Query: 113 RFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGH---LKLTDFGSATQV------DKN 163
F ++A+ +YL ++HRDI N LL+ G K+ DFG A + K
Sbjct: 119 LFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKG 178
Query: 164 GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG-YTGSCDLWSIGVVSYELLT-GSTPF--- 218
GR +++P+ +WM DG +T D+WS GV+ +E+ + G P+
Sbjct: 179 GR--AMLPI-----------KWMPPEAFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGR 225
Query: 219 -NYETLDM 225
N E ++
Sbjct: 226 TNQEVMEF 233
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 75.9 bits (186), Expect = 5e-14
Identities = 70/242 (28%), Positives = 113/242 (46%), Gaps = 47/242 (19%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL------REKMPNTIERDIMVKSKCP 68
+++++ + I G FG+++LV+ K++ F K + REK IE ++M + K
Sbjct: 13 NEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHK 72
Query: 69 YIVNLFYSFQDM--NHVYFIMEYVTGGDFVTLLEN--QPHGYLSESKARFYIYELAQAVQ 124
IV F + +Y +ME+ GD ++ + G + E +L A+
Sbjct: 73 NIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALA 132
Query: 125 YLHGLG-------YVHRDIKPDNMLLSATG--HL----------------KLTDFGSATQ 159
Y H L +HRD+KP N+ LS TG H+ K+ DFG
Sbjct: 133 YCHNLKDGPNGERVLHRDLKPQNIFLS-TGIRHIGKITAQANNLNGRPIAKIGDFG---- 187
Query: 160 VDKNGRIKSIVP--VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTP 217
+ KN I+S+ VGTP Y +PE+L H + Y D+W++G + YEL +G TP
Sbjct: 188 LSKNIGIESMAHSCVGTPYYWSPELLL-----HETKSYDDKSDMWALGCIIYELCSGKTP 242
Query: 218 FN 219
F+
Sbjct: 243 FH 244
>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase,
Fer. Protein Tyrosine Kinase (PTK) family; Fer kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Fer kinase is a member
of the Fes subfamily of proteins which are cytoplasmic
(or nonreceptor) tyr kinases containing an N-terminal
region with FCH (Fes/Fer/CIP4 homology) and coiled-coil
domains, followed by a SH2 domain, and a C-terminal
catalytic domain. Fer kinase is expressed in a wide
variety of tissues, and is found to reside in both the
cytoplasm and the nucleus. It plays important roles in
neuronal polarization and neurite development,
cytoskeletal reorganization, cell migration, growth
factor signaling, and the regulation of cell-cell
interactions mediated by adherens junctions and focal
adhesions. Fer kinase also regulates cell cycle
progression in malignant cells.
Length = 250
Score = 72.3 bits (177), Expect = 6e-14
Identities = 55/201 (27%), Positives = 93/201 (46%), Gaps = 17/201 (8%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI------ERDIMVKSKCPYIVNLFYSFQ 78
+GNFG+++ + T V K +E +P + E I+ + P IV L
Sbjct: 5 KGNFGEVF--KGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCT 62
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
+Y +ME V GGDF++ L + ++ +F + + A + YL +HRD+
Sbjct: 63 QRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFAL-DAAAGMAYLESKNCIHRDLAA 121
Query: 139 DNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGS 198
N L+ LK++DFG + Q D S + ++ APE L N+G Y+
Sbjct: 122 RNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEAL-----NYGR--YSSE 174
Query: 199 CDLWSIGVVSYELLT-GSTPF 218
D+WS G++ +E + G P+
Sbjct: 175 SDVWSYGILLWETFSLGVCPY 195
>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine
Kinases, Fungal Mitogen-Activated Protein Kinases Sty1
and Hog1. Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Sty1/Hog1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. This subfamily is composed of the MAPKs Sty1
from Schizosaccharomyces pombe, Hog1 from Saccharomyces
cerevisiae, and similar proteins. MAPKs are important
mediators of cellular responses to extracellular
signals. Sty1 and Hog1 are stress-activated MAPKs that
partipate in transcriptional regulation in response to
stress. Sty1 is activated in response to oxidative
stress, osmotic stress, and UV radiation. Sty1 is
regulated by the MAP2K Wis1, which is activated by the
MAP3Ks Wis4 and Win1, which receive signals of the
stress condition from membrane-spanning histidine
kinases Mak1-3. Activated Sty1 stabilizes the Atf1
transcription factor and induces transcription of
Atf1-dependent genes of the core environmetal stress
response (CESR). Hog1 is the key element in the high
osmolarity glycerol (HOG) pathway and is activated upon
hyperosmotic stress. Activated Hog1 accumulates in the
nucleus and regulates stress-induced transcription. The
HOG pathway is mediated by two transmembrane
osmosensors, Sln1 and Sho1.
Length = 328
Score = 73.3 bits (180), Expect = 6e-14
Identities = 54/180 (30%), Positives = 88/180 (48%), Gaps = 17/180 (9%)
Query: 83 VYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNML 142
+YF+ E + G D LL ++P L + ++++Y++ + ++Y+H G VHRD+KP N+L
Sbjct: 85 IYFVTE-LLGTDLHRLLTSRP---LEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNIL 140
Query: 143 LSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEV-LEWMEGNHGSDGYTGSCDL 201
++ LK+ DFG A D + V T Y APE+ L W + Y D+
Sbjct: 141 INENCDLKICDFGLARIQDP----QMTGYVSTRYYRAPEIMLTWQK-------YDVEVDI 189
Query: 202 WSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFVQSLVQK 261
WS G + E+L G F + +S I ++I S + FVQSL ++
Sbjct: 190 WSAGCIFAEMLEGKPLFPGKDHVNQFSIITDLLGTPPDDVINTI-CSENTLRFVQSLPKR 248
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 75.5 bits (186), Expect = 6e-14
Identities = 63/290 (21%), Positives = 127/290 (43%), Gaps = 40/290 (13%)
Query: 366 QLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESD 425
+LA LE+L R + LQ ++ +++L T+ L + EE+++ LR E+ + E +
Sbjct: 226 ELALLVLRLEEL---REELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEE 282
Query: 426 LVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATK 485
+ +L A +E+ + + + +R+LE E+ +LE L +L+E
Sbjct: 283 IEELQKELYALANEISRLEQQKQILRERLANLERQLE--ELEAQLEELESKLDELAEELA 340
Query: 486 QWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDS--- 542
+ ++ +L++ + E E+L+ +L LE EL+ E L + L++
Sbjct: 341 ELEE--------------KLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRS 386
Query: 543 ----KLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELE 598
+ +L+N IE ++ +E+ R E+ +++ + LL+ E EL+
Sbjct: 387 KVAQLELQIASLNNEIERLEARLERLEDRR-------ERLQQEIEELLKKLEEAELKELQ 439
Query: 599 VRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQ 648
LE ELE +++ L LE+ EL + ++
Sbjct: 440 AE-----LEELEEELEELQEELERLEE--ALEELREELEEAEQALDAAER 482
Score = 69.7 bits (171), Expect = 4e-12
Identities = 78/343 (22%), Positives = 154/343 (44%), Gaps = 35/343 (10%)
Query: 344 STLPPSSEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTS 403
S L E + + +L +++AE + +L +L R + L+ ++ L+++L +
Sbjct: 671 SILERRRE-IEELEEKIEELEEKIAELEKALAEL---RKELEELEEELEQLRKELEELSR 726
Query: 404 LLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEV 463
+S +++ RL E+ + E + + L ELE EL+E+ LE+ ++ E
Sbjct: 727 QISALRKDLARLEAEVEQLEERI----AQLSKELTELEAEIEELEER--LEEAEEELAEA 780
Query: 464 CEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLE 523
+ELE ++E+ K K ++ + E A + L + L+E+L SLE
Sbjct: 781 EAEIEELE---AQIEQLKEELKALREA----LDELRAELTLLNEEAAN---LRERLESLE 830
Query: 524 QELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRK 583
+ + +E L + ++ + ++L+ IE +++ +E+ E+ + + +
Sbjct: 831 RRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELE---SELEALLNERASLEE 887
Query: 584 TLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREEN 643
L L+S E L E+R +LES R EL ++ E A+ +L VR +N
Sbjct: 888 ALALLRSELEELSEELR----ELESKRSELRRELEELREKLAQLELRLEG---LEVRIDN 940
Query: 644 KKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLK 686
Q ++ YSL + A++ K E + R K+L+
Sbjct: 941 ---LQERLSEEYSL--TLEEAEALENKIEDDEEEARRRLKRLE 978
Score = 69.7 bits (171), Expect = 5e-12
Identities = 56/247 (22%), Positives = 111/247 (44%), Gaps = 14/247 (5%)
Query: 368 AEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLV 427
AE + E L R V L+ ++ LQ++L + + +S+ E++ LR+ + E L
Sbjct: 260 AELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLE 319
Query: 428 ATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQW 487
+ L +L+E+ EL E E EK ++ K E+ + ELE L ELEE ++ ++
Sbjct: 320 ELEAQLEELESKLDELAEELAELE--EKLEELKEELESLEAELEELEAELEELESRLEEL 377
Query: 488 KKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL-KVSEEALATAQNSLDSKLRE 546
++ + ++ E E L+ +L LE ++ +E + +++L+E
Sbjct: 378 EEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKE 437
Query: 547 HQALSNTIESMQKEM-EQSAVRVREMSGISEKYEKDRKTLLELKS----------AKERL 595
QA +E +E+ E+ + + E+ E+ + L + + ERL
Sbjct: 438 LQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERL 497
Query: 596 ELEVRGY 602
+ + G+
Sbjct: 498 QENLEGF 504
Score = 68.2 bits (167), Expect = 1e-11
Identities = 61/259 (23%), Positives = 114/259 (44%), Gaps = 13/259 (5%)
Query: 429 TSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWK 488
T+S ++ R E+EE+ +++E E E+ K L LR ELEE + +Q +
Sbjct: 668 TNSSILERRREIEELEEKIEELEEKIA---------ELEKALAELRKELEELEEELEQLR 718
Query: 489 KDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQ 548
K+ + ++ +A +L + + E E L+E++ L +EL E + + L+ E
Sbjct: 719 KELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELA 778
Query: 549 ALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLES 608
IE ++ ++EQ E+ + E ++ R L L L + + + +
Sbjct: 779 EAEAEIEELEAQIEQLK---EELKALREALDELRAELTLLNEEAANLRERLESLERRIAA 835
Query: 609 TRRELETNKDQTIELRAK-SKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSK 667
T R LE ++Q EL L EL + EE + + + SL + +S+
Sbjct: 836 TERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSE 895
Query: 668 LEKAEGELTTVREENKKLK 686
LE+ EL + + +L+
Sbjct: 896 LEELSEELRELESKRSELR 914
Score = 56.2 bits (136), Expect = 6e-08
Identities = 63/280 (22%), Positives = 118/280 (42%), Gaps = 36/280 (12%)
Query: 351 EDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEE 410
E + Q+ Q E KA E L R + L + ++L++ L S ++ E
Sbjct: 779 EAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATER 838
Query: 411 EIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKEL 470
++ L +++ + D+ + ++++ +EE+ SEL+ N + + L + EL
Sbjct: 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALA--LLRSEL 896
Query: 471 EVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSE 530
E L EL E + +R+ EL++ + + L+ +L LE + +
Sbjct: 897 EELSEELRELE--------------SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQ 942
Query: 531 EALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVRE---------MSGISE-KYEK 580
E L+ + L E +AL N IE ++E + R+ ++ I E + K
Sbjct: 943 ERLSEEYSLT---LEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELK 999
Query: 581 DRKTLLE-----LKSAKERLELEVRGYKLDLESTRRELET 615
+R L L AKE LE + ++D E+ R +T
Sbjct: 1000 ERYDFLTAQKEDLTEAKETLEEAIE--EIDREARERFKDT 1037
Score = 50.4 bits (121), Expect = 4e-06
Identities = 50/276 (18%), Positives = 102/276 (36%), Gaps = 13/276 (4%)
Query: 492 YQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALS 551
+ N+++ E ++ E E E+L EL+ + L L+ +L + +
Sbjct: 662 TGGSAKTNSSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKEL 721
Query: 552 NTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRR 611
+ + + R+ + E+ + + +L LE E+ + LE
Sbjct: 722 EELSRQISALRKDLARLE------AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEE 775
Query: 612 ELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKA 671
EL + + EL A ++E+ + EL +RE +L + ++ L+ + + LE+
Sbjct: 776 ELAEAEAEIEELEA--QIEQLKEELKALREALDEL-RAELTLLNEEAANLRERLESLERR 832
Query: 672 EGELTTVREENKKLKVSFFFTLESNSL----FWLDPNTFLSSLEDLKSNYTERESKLRSA 727
E+ ++ +ES + S LE L + E L
Sbjct: 833 IAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALL 892
Query: 728 NEIIGEYETKITALESTMTRSESYCKEMVEYLETLQ 763
+ E ++ LES + +E+ E L L+
Sbjct: 893 RSELEELSEELRELESKRSELRRELEELREKLAQLE 928
Score = 48.9 bits (117), Expect = 1e-05
Identities = 46/208 (22%), Positives = 88/208 (42%), Gaps = 24/208 (11%)
Query: 350 SEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKE 409
+ + +L ++LAE + LE+L + + +L+A++ L+ +L S L + E
Sbjct: 322 EAQLEELESKLDELAEELAELEEKLEEL---KEELESLEAELEELEAELEELESRLEELE 378
Query: 410 EEIDRLRQ---EMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEV 466
E+++ LR ++ + + L L A LE+ R L+++ + E+ E+
Sbjct: 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKEL 438
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
ELE L ELEE +E L++ + E E ++ L + E+EL
Sbjct: 439 QAELEELEEELEEL--------------QEELERLEEALEELREELEEAEQALDAAEREL 484
Query: 527 KVSEEALATAQNSLDSKLREHQALSNTI 554
L +SL+ + S +
Sbjct: 485 ----AQLQARLDSLERLQENLEGFSEGV 508
Score = 42.7 bits (101), Expect = 9e-04
Identities = 51/258 (19%), Positives = 103/258 (39%), Gaps = 32/258 (12%)
Query: 543 KLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKT---LLELKSAKERLELEV 599
K R + +E ++ +++ + E+ + E+ + ELK+ LEL +
Sbjct: 171 KERRKETERK-LERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAELRELELAL 229
Query: 600 RGYKLDLESTRRELETNKDQTIEL-----RAKSKLEKAEGELTTVREENKKLKQGKIRLV 654
L LE R ELE +++ E ++L++ E +L +R E +L++
Sbjct: 230 --LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEI---- 283
Query: 655 YSLFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLK 714
+ Q +L E++ + ++ + L+ S L++L
Sbjct: 284 -------EELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELA 336
Query: 715 SNYTERESKLRSANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNE 774
E E E + E + ++ +LE+ + E+ +E+ LE L++ + L
Sbjct: 337 EELAELE-------EKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVA 389
Query: 775 QLRKKNNDILSHDNEQLR 792
QL + I S +NE R
Sbjct: 390 QLELQ---IASLNNEIER 404
Score = 33.9 bits (78), Expect = 0.46
Identities = 58/269 (21%), Positives = 102/269 (37%), Gaps = 61/269 (22%)
Query: 570 EMSGISEKYEKDRK-TLLELKSAKERL--------------------------------- 595
E +GIS KY++ RK T +L+ +E L
Sbjct: 163 EAAGIS-KYKERRKETERKLERTRENLDRLEDILNELERQLKSLERQAEKAERYKELKAE 221
Query: 596 --ELEVRGYKLDLESTRRELETNKDQTIEL-----RAKSKLEKAEGELTTVREENKKLKQ 648
ELE+ L LE R ELE +++ E ++L++ E +L +R E +L++
Sbjct: 222 LRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEE 281
Query: 649 GKIRLVYSLFKDPQPAQSKLEK----------------AEGELTTVREENKKLKVSFFFT 692
+I + S+LE+ E E E+K +++
Sbjct: 282 -EIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELA 340
Query: 693 LESNSLFWLDPN--TFLSSLEDLKSNYTERESKLRSANEIIGEYETKITALESTMTRSES 750
L L + + LE+L++ E ES+L E + +K+ LE + +
Sbjct: 341 ELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNN 400
Query: 751 YCKEMVEYLETLQKNNDILSHDNEQLRKK 779
+ + LE L+ + L + E+L KK
Sbjct: 401 EIERLEARLERLEDRRERLQQEIEELLKK 429
>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src
kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; C-terminal Src kinase (Csk)
subfamily; catalytic (c) domain. The Csk subfamily is
composed of Csk, Chk, and similar proteins. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk and Chk are translocated to the membrane via binding
to specific transmembrane proteins, G-proteins, or
adaptor proteins near the membrane. Csk catalyzes the
tyr phosphorylation of the regulatory C-terminal tail of
Src kinases, resulting in their inactivation. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As negative regulators of Src
kinases, Csk and Chk play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression.
Length = 256
Score = 71.7 bits (176), Expect = 9e-14
Identities = 48/212 (22%), Positives = 95/212 (44%), Gaps = 19/212 (8%)
Query: 12 VSASDFDIKRFIQQGNFGDIYL-VEEKQSHNTFVMKKVLREKMPNTIERDIMVKSKCPYI 70
+++ + + I +G FGD+ L Q +K E +M + P +
Sbjct: 3 INSKELKLGATIGKGEFGDVMLGDYRGQKVAVKCLKDDSTAAQAFLAEASVMTTLRHPNL 62
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
V L N +Y + EY+ G V L ++ ++ ++ + ++ + ++YL
Sbjct: 63 VQLLGVVLQGNPLYIVTEYMAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKN 122
Query: 131 YVHRDIKPDNMLLSATGHLKLTDFGSATQVDKN---GRIKSIVPVGTPEYVAPEVLEWME 187
+VHRD+ N+L+S K++DFG A + + G++ PV ++ APE L
Sbjct: 123 FVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKL----PV---KWTAPEALR--- 172
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
++ D+WS G++ +E+ + G P+
Sbjct: 173 --EKK--FSTKSDVWSFGILLWEIYSFGRVPY 200
>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase;
Provisional.
Length = 353
Score = 72.5 bits (178), Expect = 1e-13
Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 37/279 (13%)
Query: 13 SASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVL---REKMPNTIERDIMV--KSKC 67
S S+ + I G G +Y V + + + +K + + + I R+I +
Sbjct: 72 SLSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNH 131
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQ---PHGYLSESKARFYIYELAQAVQ 124
P +V F + ++E++ GG LE +L++ AR ++ +
Sbjct: 132 PNVVKCHDMFDHNGEIQVLLEFMDGGS----LEGTHIADEQFLADV-AR----QILSGIA 182
Query: 125 YLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRI--KSIVP----VGTPEYV 178
YLH VHRDIKP N+L+++ ++K+ DFG RI +++ P VGT Y+
Sbjct: 183 YLHRRHIVHRDIKPSNLLINSAKNVKIADFGV-------SRILAQTMDPCNSSVGTIAYM 235
Query: 179 APEVLEWMEGNHGS-DGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTED 237
+PE + + NHG+ DGY G D+WS+GV E G PF S + A
Sbjct: 236 SPERIN-TDLNHGAYDGYAG--DIWSLGVSILEFYLGRFPFGVGRQGDWASLMCAICMSQ 292
Query: 238 TVSFPSSIRLSTAMVNFVQSLVQKLDA-RLNMDQVLGHP 275
P++ S +F+ +Q+ A R + Q+L HP
Sbjct: 293 PPEAPATA--SREFRHFISCCLQREPAKRWSAMQLLQHP 329
>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional.
Length = 496
Score = 73.4 bits (180), Expect = 1e-13
Identities = 58/185 (31%), Positives = 88/185 (47%), Gaps = 23/185 (12%)
Query: 83 VYFIMEYVTGGDFVTLLENQPHGY--LSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
+ +++Y GD ++++ E +A ++ AV ++H +HRDIK N
Sbjct: 114 IALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSAN 173
Query: 141 MLLSATGHLKLTDFG-----SATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
+LL + G +KL DFG +AT D GR GTP YVAPE+ W Y
Sbjct: 174 ILLCSNGLVKLGDFGFSKMYAATVSDDVGR----TFCGTPYYVAPEI--WRR-----KPY 222
Query: 196 TGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTVSFPSSIRLSTAMVNFV 255
+ D++S+GV+ YELLT PF+ E ++ LA + P SI S M V
Sbjct: 223 SKKADMFSLGVLLYELLTLKRPFDGENMEEVMHKTLAGRYD---PLPPSI--SPEMQEIV 277
Query: 256 QSLVQ 260
+L+
Sbjct: 278 TALLS 282
>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine
Kinase, Fungal Mitogen-Activated Protein Kinase MPK1.
Serine/Threonine Kinases (STKs), Fungal
Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MPK1 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. This subfamily is
composed of the MAPKs MPK1 from Saccharomyces
cerevisiae, Pmk1 from Schizosaccharomyces pombe, and
similar proteins. MAPKs are important mediators of
cellular responses to extracellular signals. MPK1 (also
called Slt2) and Pmk1 (also called Spm1) are
stress-activated MAPKs that regulate the cell wall
integrity (CWI) pathway, and are therefore important in
the maintainance of cell shape, cell wall construction,
morphogenesis, and ion homeostasis. MPK1 is activated in
response to cell wall stress including heat stimulation,
osmotic shock, UV irradiation, and any agents that
interfere with cell wall biogenesis such as chitin
antagonists, caffeine, or zymolase. MPK1 is regulated by
the MAP2Ks Mkk1/2, which are regulated by the MAP3K
Bck1. Pmk1 is also activated by multiple stresses
including elevated temperatures, hyper- or hypotonic
stress, glucose deprivation, exposure to cell-wall
damaging compounds, and oxidative stress. It is
regulated by the MAP2K Pek1, which is regulated by the
MAP3K Mkh1.
Length = 332
Score = 72.1 bits (177), Expect = 2e-13
Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 48/229 (20%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSH--NTFVMKKVLREKMPNTIERDIMVKSKC------- 67
+++ + + QG +G + ++ T +KK+ N + I+ K
Sbjct: 2 YELIKELGQGAYGIVCSARNAETSEEETVAIKKI-----TNVFSKKILAKRALRELKLLR 56
Query: 68 -----PYIVNLFYSFQDM--------NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARF 114
I L+ DM N +Y E + + QP L+++ +
Sbjct: 57 HFRGHKNITCLY----DMDIVFPGNFNELYLYEELMEADLHQIIRSGQP---LTDAHFQS 109
Query: 115 YIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFG-----SATQVDKNGRIKSI 169
+IY++ ++Y+H +HRD+KP N+L++A LK+ DFG S + G +
Sbjct: 110 FIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEY 169
Query: 170 VPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
V T Y APE+ M YT + D+WS+G + ELL G P
Sbjct: 170 --VATRWYRAPEI---MLSFQ---SYTKAIDVWSVGCILAELL-GRKPV 209
>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 6.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 6 (CDK6) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK6 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK6
is regulated by D-type cyclins and INK4 inhibitors. It
is active towards the retinoblastoma (pRb) protein,
implicating it to function in regulating the early G1
phase of the cell cycle. It is expressed ubiquitously
and is localized in the cytoplasm. It is also present in
the ruffling edge of spreading fibroblasts and may play
a role in cell spreading. It binds to the p21 inhibitor
without any effect on its own activity and it is
overexpressed in squamous cell carcinomas and
neuroblastomas. CDK6 has also been shown to inhibit cell
differentiation in many cell types.
Length = 290
Score = 71.6 bits (175), Expect = 2e-13
Identities = 58/205 (28%), Positives = 94/205 (45%), Gaps = 25/205 (12%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLR-----EKMPNTIERDIMVKSKC-----PYIVN 72
I +G +G ++ + ++ FV K +R E MP + R++ V P +V
Sbjct: 9 IGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVR 68
Query: 73 LF----YSFQDM-NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
LF S D + + E+V D T L+ P + + +++L + + +LH
Sbjct: 69 LFDVCTVSRTDRETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLH 127
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWME 187
VHRD+KP N+L++++G +KL DFG A + S+V T Y APEVL
Sbjct: 128 SHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVV--TLWYRAPEVLL--- 182
Query: 188 GNHGSDGYTGSCDLWSIGVVSYELL 212
Y DLWS+G + E+
Sbjct: 183 ----QSSYATPVDLWSVGCIFAEMF 203
>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional.
Length = 335
Score = 72.1 bits (177), Expect = 2e-13
Identities = 53/236 (22%), Positives = 105/236 (44%), Gaps = 46/236 (19%)
Query: 20 KRFIQ------QGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERD------------- 60
+R+IQ +G +G + + + +KKV ++ N + +D
Sbjct: 8 ERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTT 67
Query: 61 -----IMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFY 115
IM + K I+ L + + + + +M+ + D +++ + L+ES+ +
Sbjct: 68 LRELKIMNEIKHENIMGLVDVYVEGDFINLVMDIMAS-DLKKVVDRKI--RLTESQVKCI 124
Query: 116 IYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQ------VDKNGRIKSI 169
+ ++ + LH ++HRD+ P N+ +++ G K+ DFG A + D + +++
Sbjct: 125 LLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETM 184
Query: 170 VP-------VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
V T Y APE+L G++ Y + D+WS+G + ELLTG F
Sbjct: 185 QRREEMTSKVVTLWYRAPELL------MGAEKYHFAVDMWSVGCIFAELLTGKPLF 234
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 72.0 bits (177), Expect = 8e-13
Identities = 56/299 (18%), Positives = 129/299 (43%), Gaps = 32/299 (10%)
Query: 357 KRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLR 416
+ L ++ E L++ + A++ Q++SL+++L T +S+ E+ ++ +
Sbjct: 212 RYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIE 271
Query: 417 QE--------MVKKESDLVATSSDLVATRHELEEVRSELKEKE-NLEKTDDR----KLEV 463
Q E + + + E+ + + EKE LE ++R + E+
Sbjct: 272 QLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEI 331
Query: 464 CEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLE 523
++ E+E L E+EE++ K R+ E + + E E L+ +L ++
Sbjct: 332 DKLLAEIEELEREIEEER--------------KRRDKLTEEYAELKEELEDLRAELEEVD 377
Query: 524 QELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRK 583
+E + + L + L+ RE L ++ +Q+E+++ + + + ++
Sbjct: 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELAD---LNAAIAGIEA 434
Query: 584 TLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREE 642
+ EL+ KE LE++ + LE +L + + K + ++ E EL+ ++ E
Sbjct: 435 KINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQEL--YDLKEEYDRVEKELSKLQRE 491
Score = 68.2 bits (167), Expect = 1e-11
Identities = 62/283 (21%), Positives = 126/283 (44%), Gaps = 11/283 (3%)
Query: 368 AEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLV 427
A L+ L R R+ L+ ++SSLQ +L + L + +E+ +++ + E ++
Sbjct: 670 RSEPAELQRL---RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIE 726
Query: 428 ATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQW 487
+ + LEE+ +L E ++ ++ K E+ E+ +E L +L + + A
Sbjct: 727 QLEQEEEKLKERLEELEEDLSSLE--QEIENVKSELKELEARIEELEEDLHKLEEALNDL 784
Query: 488 KKDWYQS-VKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLRE 546
+ S + E A +++L++ + EA +L +EQ+L + + +
Sbjct: 785 EARLSHSRIPEIQAELSKLEEEVSRIEA---RLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
Query: 547 HQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKS--AKERLELEVRGYKL 604
L I+S++KE+E + E+ E+ E + L KER ELE + +L
Sbjct: 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
Query: 605 DLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLK 647
+ + E + K + K+KLE E EL+ + + + +
Sbjct: 902 ERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDE 944
Score = 66.2 bits (162), Expect = 5e-11
Identities = 73/363 (20%), Positives = 138/363 (38%), Gaps = 69/363 (19%)
Query: 403 SLLSKKEEEIDRLRQEMVKKES-----------DLVATSSDLVATRHELEEVRSELKEKE 451
++ +K ++++RLR+E K E + + A + E + +L E
Sbjct: 191 LIIDEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQKEAIERQLASLE 250
Query: 452 NLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTE 511
E+ + E+ E+ K LE + LEE K ++ VKE ++ + + E
Sbjct: 251 --EELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE------KIGELEAE 302
Query: 512 NEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREM 571
+L+ + E+EL+ +EE LA + +D L E + L IE +K ++ E+
Sbjct: 303 IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAEL 362
Query: 572 --------SGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIEL 623
+ + E ++ +T ELK +E+LE L+ EL+ D+ E
Sbjct: 363 KEELEDLRAELEEVDKEFAETRDELKDYREKLE--------KLKREINELKRELDRLQEE 414
Query: 624 --RAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREE 681
R +L + + + +L++ K + +++K E +L + +
Sbjct: 415 LQRLSEELADLNAAIAGIEAKINELEEEK-----------EDKALEIKKQEWKLEQLAAD 463
Query: 682 NKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYETKITAL 741
K + L DLK Y E +L + E E + A
Sbjct: 464 LSKYE---------------------QELYDLKEEYDRVEKELSKLQRELAEAEAQARAS 502
Query: 742 EST 744
E
Sbjct: 503 EER 505
Score = 62.8 bits (153), Expect = 6e-10
Identities = 53/279 (18%), Positives = 117/279 (41%), Gaps = 28/279 (10%)
Query: 357 KRDRLQLLQQ-LAEAKASLEDLSC---SRTRVLA-LQAQVSSLQQDLTSHTSLLSKKEEE 411
+ L L+Q + K+ L++L L L+ ++ L+ L+ S + + + E
Sbjct: 742 LEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH--SRIPEIQAE 799
Query: 412 IDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKEN-LEKTDDRKLEVCEVSKEL 470
+ +L +E+ + E+ L L E E + E++E + ++ + KE+
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE---KEI 856
Query: 471 EVLRGELEEQKTATKQWKKDWYQSV-------KERNAAVAELKQAQTENEALKEKLTSLE 523
E L G+ EE + ++ + KER+ A+L++ + + E L+ ++
Sbjct: 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEKKR 916
Query: 524 QELKVSEEALATAQNSLDSKLREHQALSN------TIESMQKEMEQSAVRVREMSGIS-- 575
+ L + L + L ++E +Q E+++ +R + ++
Sbjct: 917 KRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNML 976
Query: 576 --EKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRE 612
++YE+ K L ELK + +LE E + +E ++
Sbjct: 977 AIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKK 1015
Score = 60.9 bits (148), Expect = 2e-09
Identities = 71/352 (20%), Positives = 152/352 (43%), Gaps = 36/352 (10%)
Query: 351 EDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEE 410
++R + +L Q+L++A + ++ + L+ + L++ L LS E+
Sbjct: 695 SELRRIENRLDELSQELSDASRKIGEIE---KEIEQLEQEEEKLKERLEELEEDLSSLEQ 751
Query: 411 EIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKEL 470
EI+ ++ E+ + E+ + ELEE +L+E N + + E+ EL
Sbjct: 752 EIENVKSELKELEARI-----------EELEEDLHKLEEALNDLEARLSHSRIPEIQAEL 800
Query: 471 EVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSE 530
L E+ + ++ ++ + E+ E+++ Q + LKE++ S+E+E+
Sbjct: 801 SKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI---- 856
Query: 531 EALATAQNSLDSKLREHQA-----------LSNTIESMQKEMEQSAVRVREMSGISEKYE 579
E L + L+ +L E +A L + ++ ++ + ++ E + + E
Sbjct: 857 ENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE---LEAQIE 913
Query: 580 KDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTV 639
K RK L ELK+ E LE E+ + + E +++ +++L++ E E+ +
Sbjct: 914 KKRKRLSELKAKLEALEEELSEI---EDPKGEDEEIPEEELSLEDVQAELQRVEEEIRAL 970
Query: 640 REENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFF 691
N Q + V + + ++KLE+ + EE +K K F
Sbjct: 971 EPVNMLAIQ-EYEEVLKRLDELKEKRAKLEEERKAILERIEEYEKKKREVFM 1021
Score = 59.7 bits (145), Expect = 5e-09
Identities = 72/354 (20%), Positives = 144/354 (40%), Gaps = 55/354 (15%)
Query: 439 ELEEVRSELKE-KENLEKTDDRKLEVCEVSKELEVLRGELEE----QKTATKQWKKDWYQ 493
+ E+ EL+E +EN+E+ D L + E ++LE LR E E+ Q ++ + + Y+
Sbjct: 171 KKEKALEELEEVEENIERLD---LIIDEKRQQLERLRREREKAERYQALLKEKREYEGYE 227
Query: 494 SVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNT 553
+KE+ A + + + + +L+E+L L +E+ L
Sbjct: 228 LLKEKEALERQKEAIERQLASLEEELEKLTEEI---------------------SELEKR 266
Query: 554 IESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKL---DLESTR 610
+E +++ +E+ +++++ E+ + ++ + EL++ LE + + D E
Sbjct: 267 LEEIEQLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERL 324
Query: 611 RELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEK 670
+LE D+ +++E+ E E+ R+ KL + L ++ + +++LE+
Sbjct: 325 AKLEAEIDKL-----LAEIEELEREIEEERKRRDKLTE----EYAELKEELEDLRAELEE 375
Query: 671 AEGELTTVREENKKLKVSF-FFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANE 729
+ E R+E K + E N L L L++ +L N
Sbjct: 376 VDKEFAETRDELKDYREKLEKLKREINEL-----KRELDRLQEELQ---RLSEELADLNA 427
Query: 730 IIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDI 783
I E KI LE K+ LE L LS ++L +
Sbjct: 428 AIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA---DLSKYEQELYDLKEEY 478
Score = 58.2 bits (141), Expect = 1e-08
Identities = 54/271 (19%), Positives = 115/271 (42%), Gaps = 28/271 (10%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVK 421
++ Q L E ++DL L ++ ++ L+ ++ S +++KE E++ + + K
Sbjct: 269 EIEQLLEELNKKIKDLG--EEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAK 326
Query: 422 KESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQK 481
E+++ +++ E+EE R K ++ L + E E+ +ELE LR ELEE
Sbjct: 327 LEAEIDKLLAEIEELEREIEEER---KRRDKLTE------EYAELKEELEDLRAELEEVD 377
Query: 482 TATKQWKKDWYQSVK-------ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALA 534
+ + + + E N EL + Q E + L E+L L + E +
Sbjct: 378 KEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKIN 437
Query: 535 TAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKER 594
+ + K E + +E + ++ + +E+ + E+Y++ K L +L+
Sbjct: 438 ELEEEKEDKALEIKKQEWKLEQLAADLSKYE---QELYDLKEEYDRVEKELSKLQRELAE 494
Query: 595 LELEVRGYKLDLESTRRELETNKDQTIELRA 625
E + R ++ + + L+A
Sbjct: 495 AEAQAR-------ASEERVRGGRAVEEVLKA 518
Score = 52.0 bits (125), Expect = 1e-06
Identities = 63/280 (22%), Positives = 115/280 (41%), Gaps = 34/280 (12%)
Query: 503 AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEME 562
AEL++ + E LK +L+SL+ EL+ E L L R+ + IE +++E E
Sbjct: 674 AELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEE 733
Query: 563 QSAVRV----REMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKD 618
+ R+ ++S + ++ E + L EL++ E LE ++ + L L
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARL----- 788
Query: 619 QTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTV 678
+ S++ + + EL+ + EE ++ + ++R + + LEK EL
Sbjct: 789 ------SHSRIPEIQAELSKLEEEVSRI-EARLREIEQKLNRLTLEKEYLEKEIQELQEQ 841
Query: 679 REENKKLKVSFFFTLESNSLFWLDPNTFL-----------SSLEDLKSNYTERESKLRSA 727
R + K+ S +E+ + + L S L DLK E E++LR
Sbjct: 842 RIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLREL 901
Query: 728 NEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNND 767
I E E +I + E+ LE L++
Sbjct: 902 ERKIEELEAQIEKKRKRL-------SELKAKLEALEEELS 934
Score = 45.1 bits (107), Expect = 2e-04
Identities = 40/200 (20%), Positives = 87/200 (43%), Gaps = 29/200 (14%)
Query: 343 DSTLPPSSEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHT 402
+ + ++ ++ R +L ++ AE K LEDL R + + + + + +L +
Sbjct: 335 LAEIEELEREIEEERKRRDKLTEEYAELKEELEDL---RAELEEVDKEFAETRDELKDYR 391
Query: 403 SLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLE 462
L K + EI+ L++E+ + + +L S +L + + +++ E E
Sbjct: 392 EKLEKLKREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEE---------- 441
Query: 463 VCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSL 522
E E E+++Q+ +Q D + EL + E + ++++L+ L
Sbjct: 442 ------EKEDKALEIKKQEWKLEQLAAD-------LSKYEQELYDLKEEYDRVEKELSKL 488
Query: 523 EQELKVSEEALATAQNSLDS 542
++EL EA A A+ S +
Sbjct: 489 QREL---AEAEAQARASEER 505
Score = 32.7 bits (75), Expect = 0.91
Identities = 47/223 (21%), Positives = 98/223 (43%), Gaps = 19/223 (8%)
Query: 570 EMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRE-LETNKDQTIELRA-KS 627
E++G++E K K L EL+ +E +E + +D + + E L +++ +A
Sbjct: 161 EIAGVAEFDRKKEKALEELEEVEENIE-RLD-LIIDEKRQQLERLRREREKAERYQALLK 218
Query: 628 KLEKAEG-ELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELT----TVREEN 682
+ + EG EL +E ++ K+ R + SL ++ + ++ + E L + E N
Sbjct: 219 EKREYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELN 278
Query: 683 KKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYETKITALE 742
KK+K E + + L+ + E+E +L A E + + E +I L
Sbjct: 279 KKIKD---LGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLL 335
Query: 743 STMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDILS 785
+ + E +E +K D L+ + +L+++ D+ +
Sbjct: 336 AEIEELE-------REIEEERKRRDKLTEEYAELKEELEDLRA 371
>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein
Serine/Threonine Kinase, Never In Mitosis gene A-related
kinase 11. Serine/Threonine Kinases (STKs), Never In
Mitosis gene A (NIMA)-related kinase 11 (Nek11)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
Nek11 subfamily is one of a family of 11 different Neks
(Nek1-11) that are involved in cell cycle control. The
Nek family is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. Nek11 is involved, through direct
phosphorylation, in regulating the degradation of Cdc25A
(Cell Division Cycle 25 homolog A), which plays a role
in cell cycle progression and in activating cyclin
dependent kinases. Nek11 is activated by CHK1
(CHeckpoint Kinase 1) and may be involved in the G2/M
checkpoint. Nek11 may also play a role in the S-phase
checkpoint as well as in DNA replication and genotoxic
stress responses.
Length = 260
Score = 68.8 bits (168), Expect = 9e-13
Identities = 61/205 (29%), Positives = 99/205 (48%), Gaps = 22/205 (10%)
Query: 19 IKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLRE-----KMPN-----TIERDIMVKSKCP 68
+++ + +G+FG +YLV++K++ +K VL+E PN E ++ K P
Sbjct: 4 LQQRLGKGSFGTVYLVKDKKAVAEERLK-VLKEIPVGELNPNETVQANQEAQLLSKLDHP 62
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHG--YLSESKARFYIYELAQAVQYL 126
IV SF + + I EY G D LE H LSE++ + +L V Y+
Sbjct: 63 AIVKFHASFLERDAFCIITEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYM 122
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWM 186
H +HRD+K N+ L LK+ DFG + + + + + GTP Y++PE L+
Sbjct: 123 HQRRILHRDLKAKNIFLK-NNLLKIGDFGVSRLLMGSCDLATTF-TGTPYYMSPEALK-- 178
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYEL 211
GY D+WS+G + YE+
Sbjct: 179 -----HQGYDSKSDIWSLGCILYEM 198
>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase,
Focal Adhesion Kinase. Protein Tyrosine Kinase (PTK)
family; Focal Adhesion Kinase (FAK); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FAK is a
cytoplasmic (or nonreceptor) tyr kinase that contains an
autophosphorylation site and a FERM domain at the
N-terminus, a central tyr kinase domain, proline-rich
regions, and a C-terminal FAT (focal adhesion targeting)
domain. FAK activity is dependent on integrin-mediated
cell adhesion, which facilitates N-terminal
autophosphorylation. Full activation is achieved by the
phosphorylation of its two adjacent A-loop tyrosines.
FAK is important in mediating signaling initiated at
sites of cell adhesions and at growth factor receptors.
Through diverse molecular interactions, FAK functions as
a biosensor or integrator to control cell motility. It
is a key regulator of cell survival, proliferation,
migration and invasion, and thus plays an important role
in the development and progression of cancer. Src binds
to autophosphorylated FAK forming the FAK-Src dual
kinase complex, which is activated in a wide variety of
tumor cells and generates signals promoting growth and
metastasis. FAK is being developed as a target for
cancer therapy.
Length = 270
Score = 69.0 bits (169), Expect = 9e-13
Identities = 57/216 (26%), Positives = 98/216 (45%), Gaps = 18/216 (8%)
Query: 12 VSASDFDIKRFIQQGNFGDIY--LVEEKQSHNTFVMKKVLREKMPNTI------ERDIMV 63
+ D + R I +G FGD+Y + ++ V K + ++ E IM
Sbjct: 3 IQREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMR 62
Query: 64 KSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAV 123
+ P+IV L + N V+ +ME G+ + L+ L + Y Y+L+ A+
Sbjct: 63 QFDHPHIVKLIGVITE-NPVWIVMELAPLGELRSYLQ-VNKYSLDLASLILYSYQLSTAL 120
Query: 124 QYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVL 183
YL +VHRDI N+L+S+ +KL DFG + ++ K+ +++APE +
Sbjct: 121 AYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESI 180
Query: 184 EWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
+ +T + D+W GV +E+L G PF
Sbjct: 181 NFRR-------FTSASDVWMFGVCMWEILMLGVKPF 209
>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase,
c-Jun N-terminal Kinase. Serine/Threonine Kinases
(STKs), c-Jun N-terminal kinase (JNK) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The JNK subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. JNKs are
mitogen-activated protein kinases (MAPKs) that are
involved in many stress-activated responses including
those during inflammation, neurodegeneration, apoptosis,
and persistent pain sensitization, among others. They
are also essential regulators of physiological and
pathological processes and are involved in the
pathogenesis of several diseases such as diabetes,
atherosclerosis, stroke, Parkinson's and Alzheimer's.
Vetebrates harbor three different JNK genes (Jnk1, Jnk2,
and Jnk3) that are alternatively spliced to produce at
least 10 isoforms. JNKs are specifically activated by
the MAPK kinases MKK4 and MKK7, which are in turn
activated by upstream MAPK kinase kinases as a result of
different stimuli including stresses such as ultraviolet
(UV) irradiation, hyperosmolarity, heat shock, or
cytokines. JNKs activate a large number of different
substrates based on specific stimulus, cell type, and
cellular condition, and may be implicated in seemingly
contradictory functions.
Length = 353
Score = 69.4 bits (170), Expect = 2e-12
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 27/157 (17%)
Query: 70 IVNLFY---SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYL 126
++N+F S ++ VY +ME + L L + + +Y++ +++L
Sbjct: 80 LLNVFTPQKSLEEFQDVYLVMELMDAN-----LCQVIQMDLDHERMSYLLYQMLCGIKHL 134
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPE-----YVAPE 181
H G +HRD+KP N+++ + LK+ DFG A R + TP Y APE
Sbjct: 135 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLA-------RTAGTSFMMTPYVVTRYYRAPE 187
Query: 182 VLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
V+ M GY + D+WS+G + E++ G+ F
Sbjct: 188 VILGM-------GYKENVDIWSVGCIMGEMIRGTVLF 217
>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase,
Lyn. Protein Tyrosine Kinase (PTK) family; Lyn kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lyn is a member of the
Src subfamily of proteins, which are cytoplasmic (or
non-receptor) tyr kinases. Src kinases contain an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. Lyn is
expressed in B lymphocytes and myeloid cells. It
exhibits both positive and negative regulatory roles in
B cell receptor (BCR) signaling. Lyn, as well as Fyn and
Blk, promotes B cell activation by phosphorylating ITAMs
(immunoreceptor tyr activation motifs) in CD19 and in Ig
components of BCR. It negatively regulates signaling by
its unique ability to phosphorylate ITIMs
(immunoreceptor tyr inhibition motifs) in cell surface
receptors like CD22 and CD5. Lyn also plays an important
role in G-CSF receptor signaling by phosphorylating a
variety of adaptor molecules.
Length = 261
Score = 67.4 bits (164), Expect = 3e-12
Identities = 55/204 (26%), Positives = 99/204 (48%), Gaps = 26/204 (12%)
Query: 26 GNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-------ERDIMVKSKCPYIVNLFYSFQ 78
G FG++++ S T V K L+ P T+ E ++M + +V L+
Sbjct: 17 GQFGEVWMGYYNNS--TKVAVKTLK---PGTMSVQAFLEEANLMKTLQHDKLVRLYAVVT 71
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
+Y I EY+ G + L++ G + K + ++A+ + Y+ Y+HRD++
Sbjct: 72 KEEPIYIITEYMAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRA 131
Query: 139 DNMLLSATGHLKLTDFGSATQVDKN---GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
N+L+S + K+ DFG A ++ N R + P+ ++ APE + N GS +
Sbjct: 132 ANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPI---KWTAPEAI-----NFGS--F 181
Query: 196 TGSCDLWSIGVVSYELLT-GSTPF 218
T D+WS G++ YE++T G P+
Sbjct: 182 TIKSDVWSFGILLYEIVTYGKIPY 205
>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 2. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK2 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK2
is specifically translocated to the mitochondria during
dopaminergic cell death. Specific substrates include the
microtubule-associated proteins DCX and Tau, as well as
TIF-IA which is involved in ribosomal RNA synthesis
regulation. Mice deficient in Jnk2 show protection
against arthritis, type 1 diabetes, atherosclerosis,
abdominal aortic aneurysm, cardiac cell death,
TNF-induced liver damage, and tumor growth, indicating
that JNK2 may play roles in the pathogenesis of these
diseases.
Length = 359
Score = 68.1 bits (166), Expect = 4e-12
Identities = 67/275 (24%), Positives = 113/275 (41%), Gaps = 60/275 (21%)
Query: 70 IVNLFY---SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYL 126
++N+F S ++ VY +ME + L H L + + +Y++ +++L
Sbjct: 85 LLNVFTPQKSLEEFQDVYLVMELMDAN-----LCQVIHMELDHERMSYLLYQMLCGIKHL 139
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWM 186
H G +HRD+KP N+++ + LK+ DFG A N + V T Y APEV+ M
Sbjct: 140 HSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVV--TRYYRAPEVILGM 197
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF---------------------------- 218
GY + D+WS+G + EL+ GS F
Sbjct: 198 -------GYKENVDIWSVGCIMGELVKGSVIFQGTDHIDQWNKVIEQLGTPSAEFMNRLQ 250
Query: 219 ----NYETLDMTYSSILACDTEDTVSFPS-----SIRLSTAMVNFVQSLVQKLDARLNMD 269
NY Y I + FPS ++ S A + LV D R+++D
Sbjct: 251 PTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVD 310
Query: 270 QVLGHPV----FDCLDSDPPCIPPPSQENKFHKKD 300
+ L HP +D +++ P PP + + +++
Sbjct: 311 EALRHPYITVWYDPAEAEAP--PPQIYDAQLEERE 343
>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine
Kinase, C-ros. Protein Tyrosine Kinases (PTK) family;
C-ros and Drosophila Sevenless proteins; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The
proto-oncogene c-ros encodes an orphan receptor tyr
kinase (RTK) with an unknown ligand. RTKs contain an
extracellular ligand-binding domain, a transmembrane
region, and an intracellular tyr kinase domain. RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. C-ros is
expressed in embryonic cells of the kidney, intestine
and lung, but disappears soon after birth. It persists
only in the adult epididymis. Male mice bearing inactive
mutations of c-ros lack the initial segment of the
epididymis and are infertile. The Drosophila protein,
Sevenless, is required for the specification of the R7
photoreceptor cell during eye development.
Length = 269
Score = 67.2 bits (164), Expect = 4e-12
Identities = 65/233 (27%), Positives = 101/233 (43%), Gaps = 40/233 (17%)
Query: 21 RFIQQGNFGDIY---LVEE--KQSHNTFVMKKVLR------EKMPNTIERDIMVKSKCPY 69
F+ G FG++Y + S V K LR EK E +M P
Sbjct: 1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPN 60
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLL-----ENQPHGYLSESKARFYIYELAQAVQ 124
IV L Y IME + GGD ++ L E L+ + ++A+
Sbjct: 61 IVKLLGVCLLNEPQYIIMELMEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCV 120
Query: 125 YLHGLGYVHRDIKPDNMLLSATGH-----LKLTDFGSATQVDKNG----RIKSIVPVGTP 175
YL + ++HRD+ N L+S G+ +K+ DFG A + K+ + ++PV
Sbjct: 121 YLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPV--- 177
Query: 176 EYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----NYETL 223
++APE L ++G +T D+WS GV+ +E+LT G P+ N E L
Sbjct: 178 RWMAPESL--LDGK-----FTTQSDVWSFGVLMWEILTLGQQPYPALNNQEVL 223
>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PFTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PFTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PFTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PFTAIRE-1 is
widely expressed except in the spleen and thymus. It is
highly expressed in the brain, heart, pancreas, testis,
and ovary, and is localized in the cytoplasm. It is
regulated by cyclin D3 and is inhibited by the p21 cell
cycle inhibitor. It has also been shown to interact with
the membrane-associated cyclin Y, which recruits the
protein to the plasma membrane.
Length = 303
Score = 67.4 bits (164), Expect = 5e-12
Identities = 60/206 (29%), Positives = 94/206 (45%), Gaps = 28/206 (13%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLR----EKMPNTIERD--IMVKSKCPYIVNLFYSFQ 78
+G++ +Y + K + V KV+R E P T R+ ++ K IV L
Sbjct: 15 EGSYATVYKGKSK-VNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIH 73
Query: 79 DMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKP 138
+ + EYV D ++ P G L + ++++L + + Y+H +HRD+KP
Sbjct: 74 TKETLTLVFEYVHT-DLCQYMDKHPGG-LHPENVKLFLFQLLRGLSYIHQRYILHRDLKP 131
Query: 139 DNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP------VGTPEYVAPEVLEWMEGNHGS 192
N+L+S TG LKL DFG A R KS+ V T Y P+VL GS
Sbjct: 132 QNLLISDTGELKLADFGLA-------RAKSVPSHTYSNEVVTLWYRPPDVL------LGS 178
Query: 193 DGYTGSCDLWSIGVVSYELLTGSTPF 218
Y+ D+W +G + E++ G F
Sbjct: 179 TEYSTCLDMWGVGCIFVEMIQGVAAF 204
>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinases, Janus kinases. Protein Tyrosine
Kinase (PTK) family; Janus kinase (Jak) subfamily;
catalytic (c) domain (repeat 2). The Jak subfamily is
composed of Jak1, Jak2, Jak3, TYK2, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal tyr kinase
catalytic domain. Most Jaks are expressed in a wide
variety of tissues, except for Jak3, which is expressed
only in hematopoietic cells. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jaks are also involved in regulating the surface
expression of some cytokine receptors. The Jak-STAT
pathway is involved in many biological processes
including hematopoiesis, immunoregulation, host defense,
fertility, lactation, growth, and embryogenesis.
Length = 284
Score = 66.7 bits (163), Expect = 5e-12
Identities = 51/219 (23%), Positives = 88/219 (40%), Gaps = 32/219 (14%)
Query: 15 SDFDIKRFIQQ---GNFGDIYLVE-EKQSHNTF--VMKKVLREKMPNTIERD------IM 62
+ +FI+Q G+FG + L + NT V K L D I+
Sbjct: 1 FEKRHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEIL 60
Query: 63 VKSKCPYIVNLFY--SFQDMNHVYFIMEYVTGGDFVTLL-ENQPHGYLSESKARFYIYEL 119
IV + IMEY+ G L ++ ++ + + ++
Sbjct: 61 RTLDHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQ--INLKRLLLFSSQI 118
Query: 120 AQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV--DKN---GRIKSIVPVGT 174
+ + YL Y+HRD+ N+L+ + +K++DFG A + DK+ + P+
Sbjct: 119 CKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPI-- 176
Query: 175 PEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT 213
+ APE L + ++ + D+WS GV YEL T
Sbjct: 177 -FWYAPECLR-------TSKFSSASDVWSFGVTLYELFT 207
>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-1 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-1 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-1 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-1 is
expressed ubiquitously and is localized in the
cytoplasm. Its kinase activity is cell cycle dependent
and peaks at the S and G2 phases. PCTAIRE-1 is highly
expressed in the brain and may play a role in regulating
neurite outgrowth. It can also associate with Trap
(Tudor repeat associator with PCTAIRE-2), a
physiological partner of PCTAIRE-2; with p11, a small
dimeric protein with similarity to S100; and with 14-3-3
proteins, mediators of phosphorylation-dependent
interactions in many different proteins.
Length = 301
Score = 66.6 bits (162), Expect = 8e-12
Identities = 71/292 (24%), Positives = 127/292 (43%), Gaps = 51/292 (17%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVL---REKMPNTIERDI-MVKS-KCPYIVNLFYSFQD 79
+G + +Y K + N +K++ E P T R++ ++K K IV L
Sbjct: 16 EGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT 75
Query: 80 MNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPD 139
+ + EY+ D L++ + ++ + ++++L + + Y H +HRD+KP
Sbjct: 76 EKSLTLVFEYLDK-DLKQYLDDCGN-SINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQ 133
Query: 140 NMLLSATGHLKLTDFGSATQVDKNGRIKSIVP------VGTPEYVAPEVLEWMEGNHGSD 193
N+L++ G LKL DFG A R KSI V T Y P++L GS
Sbjct: 134 NLLINERGELKLADFGLA-------RAKSIPTKTYSNEVVTLWYRPPDIL------LGST 180
Query: 194 GYTGSCDLWSIGVVSYELLTGSTPFNYETL---------------DMTYSSILACDTEDT 238
Y+ D+W +G + YE+ TG F T+ + T+ IL+ + +
Sbjct: 181 DYSTQIDMWGVGCIFYEMSTGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEFKS 240
Query: 239 VSFPS---------SIRLSTAMVNFVQSLVQ-KLDARLNMDQVLGHPVFDCL 280
++P + RL + + L+Q + R++ ++ + HP F CL
Sbjct: 241 YNYPKYRADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHCL 292
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 68.6 bits (168), Expect = 8e-12
Identities = 96/461 (20%), Positives = 196/461 (42%), Gaps = 60/461 (13%)
Query: 365 QQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKES 424
++L E + ++S + ++ ++L + + E+E++ L K E
Sbjct: 200 KELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEE 259
Query: 425 DLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTAT 484
+ + + E+EE+ ++KE + L++ + +++ E +E E+E++ +
Sbjct: 260 KIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRL 319
Query: 485 KQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQN--SLDS 542
++ + +KE L++ + + + L+++L LE+ ++ EEA A + L
Sbjct: 320 EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKK 379
Query: 543 KL--REHQALSNTIESMQK---EMEQSAVRVREMSGISEKYEKDRKT-LLELKSAK---- 592
+L + L +E ++K E+E+ ++ G +K K+ K + ELK AK
Sbjct: 380 RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCP 439
Query: 593 ---------ERLELEVRGYKLDLESTRRELETNKDQTIELRA-KSKLEKA---EGELTTV 639
R EL + Y +L+ +EL+ +++ +LR +LEK E EL +
Sbjct: 440 VCGRELTEEHRKEL-LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKL 498
Query: 640 REENKKLKQGKIRL-VYSLFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSL 698
+E ++LK+ + +L Y+L +LEK E ++E+ KLK +L+
Sbjct: 499 KELAEQLKELEEKLKKYNL--------EELEKKAEEYEKLKEKLIKLK-GEIKSLKKE-- 547
Query: 699 FWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYETKITA--------LESTMTRSES 750
L LE+LK E E KL E + E ++ LE + E
Sbjct: 548 --------LEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP 599
Query: 751 YCKEMVEY------LETLQKNNDILSHDNEQLRKKNNDILS 785
+ E +E LE +K L + ++ ++ +
Sbjct: 600 FYNEYLELKDAEKELEREEKELKKLEEELDKAFEELAETEK 640
Score = 65.1 bits (159), Expect = 1e-10
Identities = 81/362 (22%), Positives = 153/362 (42%), Gaps = 37/362 (10%)
Query: 407 KKEEEIDRL----RQEMVKKESDLVATSSDLVATRHELEEVRSELKE----KENLEKTDD 458
K+ E I+ L +E+ + ++ SS+L R ELE++ E+KE KE +E+ +
Sbjct: 186 KRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEK 245
Query: 459 RKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEK 518
+ ++LE ELEE+ K+ ++ + VKE + ELK+ E L E
Sbjct: 246 ELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKE----LKELKEKAEEYIKLSEF 301
Query: 519 LTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKY 578
EL+ E+ L+ L I +++ +++ + + + +K
Sbjct: 302 YEEYLDELREIEKRLSR--------------LEEEINGIEERIKELEEKEERLEELKKKL 347
Query: 579 EKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTT 638
++ K L EL+ E E E + K +LE ++ L T E + + +LE+ E
Sbjct: 348 KELEKRLEELEERHELYE-EAKAKKEELERLKKRL---TGLTPE-KLEKELEELEKAKEE 402
Query: 639 VREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVR---EENKKLKVSFFFTLES 695
+ EE K+ +I + K+ + A +L+KA+G+ E + ++ +T E
Sbjct: 403 IEEEISKITA-RIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAEL 461
Query: 696 NSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYETKITALESTMTRSESYCKEM 755
+ + L+ E E L+ +E+I E L+ + + Y E
Sbjct: 462 KRIE-KELKEIEEKERKLRKELRELEKVLKKESELIKLKEL-AEQLKELEEKLKKYNLEE 519
Query: 756 VE 757
+E
Sbjct: 520 LE 521
Score = 60.1 bits (146), Expect = 4e-09
Identities = 66/243 (27%), Positives = 117/243 (48%), Gaps = 28/243 (11%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVC 464
L KK EE ++L+++++K + ++ + +L +LEE++ +L E E ++
Sbjct: 520 LEKKAEEYEKLKEKLIKLKGEIKSLKKEL----EKLEELKKKLAELEK---------KLD 566
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
E+ +EL L ELEE + + ++ + ++ ELK A+ E E +++L LE+
Sbjct: 567 ELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLEE 626
Query: 525 ELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKT 584
EL + E LA + L+ L +E ++K+ + E + E+Y + +
Sbjct: 627 ELDKAFEELAETEKRLEE-------LRKELEELEKKYSE-----EEYEELREEYLELSRE 674
Query: 585 LLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENK 644
L L++ E LE K LE + ELE + EL KLEKA + +RE+ K
Sbjct: 675 LAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELE---KLEKALERVEELREKVK 731
Query: 645 KLK 647
K K
Sbjct: 732 KYK 734
Score = 54.7 bits (132), Expect = 1e-07
Identities = 75/336 (22%), Positives = 135/336 (40%), Gaps = 53/336 (15%)
Query: 353 MRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEI 412
+ + + ++ ++L E + L + + + S L + L +E+
Sbjct: 454 LEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLK 513
Query: 413 DRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEV 472
+E+ KK + L+ + E++ ++ EL++ E L+K + E+ + ELE
Sbjct: 514 KYNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKK---KLAELEKKLDELEE 570
Query: 473 LRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEA 532
EL K+ ++ ++SV+E + EL+ E LK E+EL+ E+
Sbjct: 571 ELAELL------KELEELGFESVEELEERLKELEPFYNEYLELK----DAEKELEREEKE 620
Query: 533 LATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAK 592
L + LD E +E ++KE+E+ + E E+YE+ R+ LEL
Sbjct: 621 LKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSE-----EEYEELREEYLELSREL 675
Query: 593 ERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIR 652
L E+ LE R E++ LEK + EL + K+L+
Sbjct: 676 AGLRAELEE----LEKRREEIKKT------------LEKLKEELEEREKAKKELE----- 714
Query: 653 LVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKVS 688
KLEKA + +RE+ KK K
Sbjct: 715 --------------KLEKALERVEELREKVKKYKAL 736
Score = 53.9 bits (130), Expect = 3e-07
Identities = 92/407 (22%), Positives = 185/407 (45%), Gaps = 42/407 (10%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEK--TDDRKLE 462
L +KEE ++ L++++ + E L +L EE +++ +E E L+K T +
Sbjct: 333 LEEKEERLEELKKKLKELEKRL----EELEERHELYEEAKAKKEELERLKKRLTGLTPEK 388
Query: 463 VCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQ----------TEN 512
+ + +ELE + E+EE+ + + + +KE A+ ELK+A+ TE
Sbjct: 389 LEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEE 448
Query: 513 EAL------KEKLTSLEQELKVSEEALATAQNSL---------DSKLREHQALSNTIESM 557
+L +E+ELK EE + L +S+L + + L+ ++ +
Sbjct: 449 HRKELLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKEL 508
Query: 558 QKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNK 617
++++++ + E+ +E+YEK ++ L++LK + L+ E+ + +L+ ELE
Sbjct: 509 EEKLKK--YNLEELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLE-ELKKKLAELEKKL 565
Query: 618 DQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTT 677
D+ E A+ E E +V E ++LK+ + Y+ + + + A+ +LE+ E EL
Sbjct: 566 DELEEELAELLKELEELGFESVEELEERLKE--LEPFYNEYLELKDAEKELEREEKELKK 623
Query: 678 VREENKKL-----KVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIG 732
+ EE K + L L+ E+L+ Y E +L +
Sbjct: 624 LEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELE 683
Query: 733 EYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKK 779
E E + ++ T+ + + +E + + L+K L E+LR+K
Sbjct: 684 ELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE-RVEELREK 729
Score = 44.3 bits (105), Expect = 2e-04
Identities = 41/178 (23%), Positives = 95/178 (53%), Gaps = 6/178 (3%)
Query: 515 LKEKLTSLEQELKVSE---EALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREM 571
+K ++ LE+ +K +E E + + L+ LRE +S+ + +++E+E+ V+E+
Sbjct: 174 IKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL 233
Query: 572 SGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEK 631
+ E+ E+ K L L+ +K +LE ++R + +E ++E+E +++ EL+ + +
Sbjct: 234 EELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAE 293
Query: 632 AEGELTTVREE-NKKLKQGKIRL--VYSLFKDPQPAQSKLEKAEGELTTVREENKKLK 686
+L+ EE +L++ + RL + + +LE+ E L ++++ K+L+
Sbjct: 294 EYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELE 351
Score = 40.8 bits (96), Expect = 0.003
Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKE---NLEKTDDRKL 461
L E+E++R +E+ K E +L +L T LEE+R EL+E E + E+ ++ +
Sbjct: 607 LKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE 666
Query: 462 EVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTS 521
E E+S+EL LR ELEE + ++ KK L++ + E E ++
Sbjct: 667 EYLELSRELAGLRAELEELEKRREEIKKT--------------LEKLKEELEEREKA--- 709
Query: 522 LEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREM-----SGISE 576
++EL+ E+AL + L K+++++AL ++ K E ++ E+ SG+
Sbjct: 710 -KKELEKLEKALERVEE-LREKVKKYKALL-KERALSKVGEIASEIFEELTEGKYSGVRV 766
Query: 577 KYEKDRKTLLELKSAKER 594
K E+++ L + KER
Sbjct: 767 KAEENKVKLFVVYQGKER 784
>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 9.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 9 (CDK9) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK9 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK9
together with a cyclin partner (cyclin T1, T2a, T2b, or
K) is the main component of distinct positive
transcription elongation factors (P-TEFb), which
function as Ser2 C-terminal domain kinases of RNA
polymerase II. P-TEFb participates in multiple steps of
gene expression including transcription elongation, mRNA
synthesis, processing, export, and translation. It also
plays a role in mediating cytokine induced transcription
networks such as IL6-induced STAT3 signaling. In
addition, the CDK9/cyclin T2a complex promotes muscle
differentiation and enhances the function of some
myogenic regulatory factors.
Length = 310
Score = 66.2 bits (162), Expect = 1e-11
Identities = 60/213 (28%), Positives = 93/213 (43%), Gaps = 31/213 (14%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVL----REKMPNTIERDIMV--KSKCPYIVNLF-- 74
I QG FG+++ K++ +KKVL +E P T R+I + K +VNL
Sbjct: 20 IGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEI 79
Query: 75 -------YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
Y+ + Y + E+ D LL N + + S+ + + L + Y+H
Sbjct: 80 CRTKATPYN-RYKGSFYLVFEFCEH-DLAGLLSN-KNVKFTLSEIKKVMKMLLNGLYYIH 136
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFG-----SATQVDKNGRIKSIVPVGTPEYVAPEV 182
+HRD+K N+L++ G LKL DFG S ++ K R + V T Y PE+
Sbjct: 137 RNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTN--RVVTLWYRPPEL 194
Query: 183 LEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGS 215
L G Y D+W G + E+ T S
Sbjct: 195 L------LGERDYGPPIDMWGAGCIMAEMWTRS 221
>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the
Serine/Threonine Kinases, TDY Mitogen-Activated Protein
Kinases from Plants. Serine/Threonine Kinases (STKs),
Plant TDY Mitogen-Activated Protein Kinase (MAPK)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The TDY
MAPK subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAPKs are important mediators of cellular
responses to extracellular signals. In plants, MAPKs are
associated with physiological, developmental, hormonal,
and stress responses. Some plants show numerous gene
duplications of MAPKs. Arabidopsis thaliana harbors at
least 20 MAPKs, named AtMPK1-20. Oryza sativa contains
at least 17 MAPKs. There are two subtypes of plant MAPKs
based on the conserved phosphorylation motif present in
the activation loop, TEY and TDY. Arabidopsis thaliana
contains more TEY-type MAPKs than TDY-type, whereas the
reverse is true for Oryza sativa. This subfamily
represents the TDY subtype and is composed of Group D
plant MAPKs including Arabidopsis thaliana MPK18
(AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1
(OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1),
Zea mays MPK6, and the Medicago sativa TDY1 gene
product. OsBWMK1 enhances resistance to pathogenic
infections. It mediates stress-activated defense
responses by activating a transcription factor that
affects the expression of stress-related genes. AtMPK18
is involved in microtubule-related functions.
Length = 338
Score = 66.3 bits (162), Expect = 1e-11
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 11/116 (9%)
Query: 107 LSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV--DKNG 164
L+ +F++Y+L +A++Y+H HRD+KP N+L +A LK+ DFG A D
Sbjct: 100 LTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPT 159
Query: 165 RIKSIVPVGTPEYVAPEVLEWMEGNHGS--DGYTGSCDLWSIGVVSYELLTGSTPF 218
I V T Y APE+ GS YT + D+WSIG + E+LTG F
Sbjct: 160 AIFWTDYVATRWYRAPELC-------GSFFSKYTPAIDIWSIGCIFAEVLTGKPLF 208
>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Src kinase subfamily; catalytic (c) domain. Src
subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr,
Fyn, Yrk, and Yes. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Src (or c-Src) proteins are cytoplasmic (or
non-receptor) tyr kinases which are anchored to the
plasma membrane. They contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. They were identified as the first
proto-oncogene products, and they regulate cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Src kinases are overexpressed in a
variety of human cancers, making them attractive targets
for therapy. They are also implicated in acute
inflammatory responses and osteoclast function. Src,
Fyn, Yes, and Yrk are widely expressed, while Blk, Lck,
Hck, Fgr, and Lyn show a limited expression pattern.
Length = 261
Score = 65.0 bits (159), Expect = 2e-11
Identities = 55/226 (24%), Positives = 101/226 (44%), Gaps = 30/226 (13%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-------ERDIMVKSKC 67
++R + G FG+++ + T V K L+ P T+ E IM K +
Sbjct: 6 ESLKLERKLGAGQFGEVW--MGTWNGTTKVAVKTLK---PGTMSPEAFLQEAQIMKKLRH 60
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
+V L+ + +Y + EY++ G + L++ L + ++A+ + YL
Sbjct: 61 DKLVQLYAVCSEEEPIYIVTEYMSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLE 120
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKN---GRIKSIVPVGTPEYVAPEVLE 184
Y+HRD+ N+L+ K+ DFG A ++ + R + P+ ++ APE
Sbjct: 121 SRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPI---KWTAPEAA- 176
Query: 185 WMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----NYETLDM 225
N+G +T D+WS G++ E++T G P+ N E L+
Sbjct: 177 ----NYGR--FTIKSDVWSFGILLTEIVTYGRVPYPGMTNREVLEQ 216
>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine
Kinases, Tyrosine kinase expressed in hepatocellular
carcinoma and Resting lymphocyte kinase. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase expressed
in hepatocellular carcinoma (Tec) and Resting lymphocyte
kinase (Rlk); catalytic (c) domain. The PTKc family is
part of a larger superfamily, that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tec and
Rlk (also named Txk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. Instead of PH, Rlk
contains an N-terminal cysteine-rich region. In addition
to PH, Tec also contains the Tec homology (TH) domain
with proline-rich and zinc-binding regions. Tec kinases
are expressed mainly by haematopoietic cells. Tec is
more widely-expressed than other Tec subfamily kinases.
It is found in endothelial cells, both B- and T-cells,
and a variety of myeloid cells including mast cells,
erythroid cells, platelets, macrophages and neutrophils.
Rlk is expressed in T-cells and mast cell lines. Tec and
Rlk are both key components of T-cell receptor (TCR)
signaling. They are important in TCR-stimulated
proliferation, IL-2 production and phopholipase C-gamma1
activation.
Length = 256
Score = 64.9 bits (158), Expect = 2e-11
Identities = 55/222 (24%), Positives = 102/222 (45%), Gaps = 17/222 (7%)
Query: 12 VSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI---ERDIMVKSKCP 68
++ S+ + + G FG ++L + + + +K + M E +M+K P
Sbjct: 1 INPSELTFMKELGSGQFGVVHLGKWR-AQIKVAIKAINEGAMSEEDFIEEAKVMMKLSHP 59
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHG 128
+V L+ +Y + E++ G + L Q G LS+ ++ + ++YL
Sbjct: 60 KLVQLYGVCTQQKPLYIVTEFMENGCLLNYLR-QRQGKLSKDMLLSMCQDVCEGMEYLER 118
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEG 188
++HRD+ N L+S+TG +K++DFG V + S ++ PEV + +
Sbjct: 119 NSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSK- 177
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----NYETLDM 225
Y+ D+WS GV+ +E+ T G PF NYE ++M
Sbjct: 178 ------YSSKSDVWSFGVLMWEVFTEGKMPFEKKSNYEVVEM 213
>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity
Protein Kinases, MAP kinase kinases 3 and 6. Protein
kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6
subfamily, catalytic (c) domain. PKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine or tyrosine residues on protein
substrates. The MKK3 and MKK6 subfamily is part of a
larger superfamily that includes the catalytic domains
of other protein serine/threonine kinases, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The mitogen-activated protein (MAP) kinase
signaling pathways are important mediators of cellular
responses to extracellular signals. The pathways involve
a triple kinase core cascade comprising the MAP kinase
(MAPK), which is phosphorylated and activated by a MAPK
kinase (MAPKK or MKK), which itself is phosphorylated
and activated by a MAPK kinase kinase (MAPKKK or MKKK).
MKK3 and MKK6 are dual-specificity PKs that
phosphorylate and activate their downstream target, p38
MAPK, on specific threonine and tyrosine residues.
MKK3/6 plays roles in the regulation of cell cycle
progression, cytokine- and stress-induced apoptosis,
oncogenic transformation, and adult tissue regeneration.
In addition, MKK6 plays a critical role in osteoclast
survival in inflammatory disease while MKK3 is
associated with tumor invasion, progression, and poor
patient survival in glioma.
Length = 283
Score = 65.1 bits (159), Expect = 2e-11
Identities = 52/159 (32%), Positives = 79/159 (49%), Gaps = 12/159 (7%)
Query: 122 AVQYLHG-LGYVHRDIKPDNMLLSATGHLKLTDFG-SATQVDKNGRIKSIVPVGTPEYVA 179
A++YLH L +HRD+KP N+L++ G +KL DFG S VD + + G Y+A
Sbjct: 115 ALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDS---VAKTIDAGCKPYMA 171
Query: 180 PEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILACDTEDTV 239
PE + E N GY D+WS+G+ EL TG P Y++ + + E +
Sbjct: 172 PERIN-PELN--QKGYDVKSDVWSLGITMIELATGRFP--YDSWKTPFQQLKQVVEEPSP 226
Query: 240 SFPSSIRLSTAMVNFV-QSLVQKLDARLNMDQVLGHPVF 277
P+ + S +FV + L + R N ++L HP F
Sbjct: 227 QLPAE-KFSPEFQDFVNKCLKKNYKERPNYPELLQHPFF 264
>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional.
Length = 440
Score = 66.6 bits (162), Expect = 2e-11
Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 52/322 (16%)
Query: 13 SASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDIMVKSKCPYIVN 72
+ + I G+FG +Y + +KKVL++ P R++++ +I N
Sbjct: 64 PNKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQD--PQYKNRELLIMKNLNHI-N 120
Query: 73 LFY--------SFQDMNHVYF---IMEYV--TGGDFVTLLENQPHGYLSESKARFYIYEL 119
+ + F+ F +ME++ T ++ H L + Y Y+L
Sbjct: 121 IIFLKDYYYTECFKKNEKNIFLNVVMEFIPQTVHKYMKHYARNNHA-LPLFLVKLYSYQL 179
Query: 120 AQAVQYLHGLGYVHRDIKPDNMLLSATGH-LKLTDFGSATQVDKNGRIKSIVPVGTPEYV 178
+A+ Y+H HRD+KP N+L+ H LKL DFGSA + R S+ + + Y
Sbjct: 180 CRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQR--SVSYICSRFYR 237
Query: 179 APEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYE-TLDMTYS--SILACDT 235
APE++ G+ YT DLWS+G + E++ G F+ + ++D +L T
Sbjct: 238 APELM------LGATNYTTHIDLWSLGCIIAEMILGYPIFSGQSSVDQLVRIIQVLGTPT 291
Query: 236 EDT----------VSFP--SSIRLSTAM--------VNFV-QSLVQKLDARLNMDQVLGH 274
ED + FP L +NF+ Q L + RLN + L
Sbjct: 292 EDQLKEMNPNYADIKFPDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALAD 351
Query: 275 PVFDCLDSDPPCIPPPSQENKF 296
P FD D PCI P +K
Sbjct: 352 PFFD--DLRDPCIKLPKYIDKL 371
>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional.
Length = 294
Score = 65.2 bits (159), Expect = 2e-11
Identities = 55/198 (27%), Positives = 96/198 (48%), Gaps = 15/198 (7%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLREK----MPNTIERDIMVKSKCPY--IVNLFYS 76
I +G +G +Y ++ ++ T +KK+ E+ +P+T R+I + + + IV L
Sbjct: 10 IGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDV 69
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDI 136
+Y + EY+ D +++ P + + Y+Y++ + + Y H +HRD+
Sbjct: 70 VHSEKRLYLVFEYLDL-DLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDL 128
Query: 137 KPDNMLLS-ATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
KP N+L+ T LKL DFG A R + V T Y APE+L GS Y
Sbjct: 129 KPQNLLIDRRTNALKLADFGLARAFGIPVRTFT-HEVVTLWYRAPEIL------LGSRHY 181
Query: 196 TGSCDLWSIGVVSYELLT 213
+ D+WS+G + E++
Sbjct: 182 STPVDIWSVGCIFAEMVN 199
>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-3 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-3 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-3 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-3 shows a
restricted pattern of expression and is present in
brain, kidney, and intestine. It is elevated in
Alzheimer's disease (AD) and has been shown to associate
with paired helical filaments (PHFs) and stimulate Tau
phosphorylation. As AD progresses, phosphorylated Tau
aggregates and forms PHFs, which leads to the formation
of neurofibrillary tangles (NFTs). In human glioma
cells, PCTAIRE-3 induces cell cycle arrest and cell
death.
Length = 288
Score = 64.7 bits (157), Expect = 3e-11
Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 31/229 (13%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVL---REKMPNTIERDI-MVKS-KCPYIVNLFYSFQD 79
+G + ++ K + N +K++ E P T R++ ++K+ K IV L
Sbjct: 15 EGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHT 74
Query: 80 MNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPD 139
+ + EY+ D L+N + +S + ++++L + + Y H +HRD+KP
Sbjct: 75 ERCLTLVFEYLDS-DLKQYLDNCGN-LMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQ 132
Query: 140 NMLLSATGHLKLTDFGSATQVDKNGRIKSIVP-------VGTPEYVAPEVLEWMEGNHGS 192
N+L++ G LKL DFG A R KS VP V T Y P+VL GS
Sbjct: 133 NLLINEKGELKLADFGLA-------RAKS-VPTKTYSNEVVTLWYRPPDVL------LGS 178
Query: 193 DGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSI---LACDTEDT 238
Y+ D+W +G + YE+ TG F T+ I L TE+T
Sbjct: 179 TEYSTPIDMWGVGCILYEMATGRPMFPGSTVKEELHLIFRLLGTPTEET 227
>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional.
Length = 461
Score = 65.3 bits (159), Expect = 6e-11
Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 12/96 (12%)
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP---VGT 174
+L A+ Y+HG G +HRDIK +N+L++ + L DFG+A G + GT
Sbjct: 268 QLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFA--RGSWSTPFHYGIAGT 325
Query: 175 PEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYE 210
+ APEVL D YT S D+WS G+V +E
Sbjct: 326 VDTNAPEVL-------AGDPYTPSVDIWSAGLVIFE 354
>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase,
Csk homologous kinase. Protein Tyrosine Kinase (PTK)
family; Csk homologous kinase (Chk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. Chk is also referred to
as megakaryocyte-associated tyrosine kinase (Matk). To
inhibit Src kinases, Chk is translocated to the membrane
via binding to specific transmembrane proteins,
G-proteins, or adaptor proteins near the membrane. Chk
inhibit Src kinases using a noncatalytic mechanism by
simply binding to them. As a negative regulator of Src
kinases, Chk may play important roles in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. Chk
is expressed in brain and hematopoietic cells. Studies
in mice reveal that Chk is not functionally redundant
with Csk and that it plays an important role as a
regulator of immune responses. Chk also plays a role in
neural differentiation in a manner independent of Src by
enhancing Mapk activation via Ras-mediated signaling.
Length = 254
Score = 63.1 bits (153), Expect = 7e-11
Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
Query: 81 NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
N +Y +ME ++ G+ V L + +S + + ++A+ ++YL VHRD+ N
Sbjct: 71 NGLYIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARN 130
Query: 141 MLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCD 200
+L+S G K++DFG A +V G S +PV ++ APE L+ H ++ D
Sbjct: 131 ILVSEDGVAKVSDFGLA-RVGSMGVDNSKLPV---KWTAPEALK-----HKK--FSSKSD 179
Query: 201 LWSIGVVSYELLT-GSTPF 218
+WS GV+ +E+ + G P+
Sbjct: 180 VWSYGVLLWEVFSYGRAPY 198
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 64.8 bits (158), Expect = 1e-10
Identities = 90/475 (18%), Positives = 187/475 (39%), Gaps = 35/475 (7%)
Query: 350 SEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKE 409
E ++ + + +L + L E + +E L + L+ ++ L+ L LL K +
Sbjct: 266 LEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLK 325
Query: 410 EEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKE--KENLEKTDDRKLEVCEVS 467
+RL +++ +K L + +L ++EL ++ E + +E LE+ + + E
Sbjct: 326 SLEERL-EKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERL 384
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
K+LE EL+E+ ++ + ++E + EL++ E E +KL +L+
Sbjct: 385 KQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLE 444
Query: 528 VSEEALATAQNSLD------SKLREH--QALSNTIESMQKEMEQSAVRVREMSGISEKYE 579
E +A + + +L E + L E +E+E+ R +E + + E+ E
Sbjct: 445 SKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAELREEIE 504
Query: 580 KDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTV 639
+ K L EL+ L K +LE +LE ++ EL+ K +L++ + EL +
Sbjct: 505 ELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQL 564
Query: 640 REENKKLK-----QGKIRLVYSLFKDPQPAQ----SKLEKAEGELTTVREENKKLKV--- 687
+ ++LK +R ++ + KL++ E L+ + E + L++
Sbjct: 565 EDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEA 624
Query: 688 ------------SFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYE 735
S L + L LE+ + E + E
Sbjct: 625 ENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLE 684
Query: 736 TKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDILSHDNEQ 790
K+ LE E +E+ E L+ L + ++ + + + +
Sbjct: 685 EKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKELEKLE 739
Score = 59.0 bits (143), Expect = 9e-09
Identities = 88/419 (21%), Positives = 154/419 (36%), Gaps = 56/419 (13%)
Query: 401 HTSLLSKKEEEIDRLRQEMVKKESDLVATSS-DLVATRHELEEVRSELKEKENLEKTDDR 459
K E + + +E K +L S L LE + ELKE + LE+ +
Sbjct: 165 GLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEE 224
Query: 460 K---------LEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQT 510
+ + E ELE + LEE K + + +++K R + EL++
Sbjct: 225 QEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLE 284
Query: 511 ENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVRE 570
E E E+L LE+E++ EE L + L+ + L + E ++K +
Sbjct: 285 ELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKL-------EEK 337
Query: 571 MSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLES-TRRELETNKD-QTIELRAKSK 628
+ + + E+ + EL E E+ +LE + LE K + K +
Sbjct: 338 LEKLESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEE 397
Query: 629 LEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKVS 688
L + L ++EE ++L++ +LE+ E EL + EE KKL+
Sbjct: 398 LAELSAALEEIQEELEELEK------------------ELEELERELEELEEEIKKLEEQ 439
Query: 689 FFFTLESNSLFWLD---------------PNTFLSSLEDLKSNYTERESKLRSANEIIGE 733
LES L + P L +L E + S + E
Sbjct: 440 -INQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKEEAE 498
Query: 734 YETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDILSHDNEQLR 792
+I LE + E +E++E LE + + L E+L ++ +
Sbjct: 499 LREEIEELEKELRELE---EELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQL 554
Score = 49.4 bits (118), Expect = 8e-06
Identities = 62/303 (20%), Positives = 123/303 (40%), Gaps = 35/303 (11%)
Query: 355 HWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDR 414
H K +L E + L ++ L++ LL +E +
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEE 530
Query: 415 LRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKE----NLEKTDDRKLEVCEVSKEL 470
L +++ +K +L+ + + + +L++++ EL++ E L++ + + +EL
Sbjct: 531 LEEKL-EKLENLLEEL-EELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEEL 588
Query: 471 EVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSE 530
E LR E K K+ K+ ++ER + + EL Q+ +EA E EL+ +E
Sbjct: 589 EELR---ERLKELKKKLKE-----LEERLSQLEELLQSLELSEA--------ENELEEAE 632
Query: 531 EALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKS 590
E L + KL L +++ +E+E+ + + ++ + L E
Sbjct: 633 EELESELE----KLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLE 688
Query: 591 AKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGK 650
E+LE E LE R ELE + + +E+ E + E K+L++ +
Sbjct: 689 ELEQLEEE-------LEQLREELEELLKK--LGEIEQLIEELESRKAELEELKKELEKLE 739
Query: 651 IRL 653
L
Sbjct: 740 KAL 742
Score = 44.0 bits (104), Expect = 3e-04
Identities = 55/261 (21%), Positives = 109/261 (41%), Gaps = 7/261 (2%)
Query: 358 RDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQ 417
+ L+ L++L E K L+ L ++ ++ L ++L ++ EE+ +
Sbjct: 539 ENLLEELEELKE-KLQLQQLKEELRQLEDRLQELKELLEELR-LLRTRKEELEELRERLK 596
Query: 418 EMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGEL 477
E+ KK +L S L LE +E + +E E+ + +LE + ELE L
Sbjct: 597 ELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELES-ELEKLNLQAELEELLQAA 655
Query: 478 EEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQ 537
E+ + + + +R +L++ E E L+E+L L +EL+ + L +
Sbjct: 656 LEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIE 715
Query: 538 NSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLEL 597
+ +L +A +E ++KE+E+ + + + EK K L++ ++E
Sbjct: 716 QLI-EELESRKAE---LEELKKELEKLEKALELLEELREKLGKAGLRADILRNLLAQIEA 771
Query: 598 EVRGYKLDLESTRRELETNKD 618
E L R +L
Sbjct: 772 EANEILSKLSLNRYDLRRLTI 792
Score = 34.0 bits (78), Expect = 0.33
Identities = 50/239 (20%), Positives = 95/239 (39%), Gaps = 24/239 (10%)
Query: 554 IESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRREL 613
++S KE ++ + + + E ++ + E K+ E LE ++ D+E L
Sbjct: 149 LKSKPKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEAL 208
Query: 614 E---TNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRL----------VYSLFKD 660
E + E++ + + E+ E E+ + E +L++ K RL +
Sbjct: 209 EEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEA 268
Query: 661 PQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTER 720
+ + +L + E L + E+ ++L+ LE L L L E
Sbjct: 269 LKIREEELRELERLLEELEEKIERLE-----ELEREIEEL---EEELEGLRALLEELEEL 320
Query: 721 ESKLRSANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKK 779
KL+S E + + E K+ LES E +E E + L++ L E+L K+
Sbjct: 321 LEKLKSLEERLEKLEEKLEKLES---ELEELAEEKNELAKLLEERLKELEERLEELEKE 376
>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine
Kinases, Platelet Derived Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) subfamily; catalytic (c)
domain. The PDGFR subfamily consists of PDGFR alpha,
PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
PDGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. PDGFR
kinase domains are autoinhibited by their juxtamembrane
regions containing tyr residues. The binding to their
ligands leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. PDGFR subfamily receptors are important in
the development of a variety of cells. PDGFRs are
expressed in a many cells including fibroblasts,
neurons, endometrial cells, mammary epithelial cells,
and vascular smooth muscle cells. PDGFR signaling is
critical in normal embryonic development, angiogenesis,
and wound healing. PDGFRs transduce mitogenic signals
for connective tissue cells and are important for cell
shape and motility. Kit is important in the development
of melanocytes, germ cells, mast cells, hematopoietic
stem cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. CSF-1R signaling is
critical in the regulation of macrophages and
osteoclasts. Mammalian FLT3 plays an important role in
the survival, proliferation, and differentiation of stem
cells.
Length = 302
Score = 62.9 bits (153), Expect = 1e-10
Identities = 44/156 (28%), Positives = 78/156 (50%), Gaps = 19/156 (12%)
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGL 129
IVNL + + I EY GD + L + +L+ + Y++A+ + +L
Sbjct: 101 IVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASK 160
Query: 130 GYVHRDIKPDNMLLSATGHL-KLTDFGSATQV--DKNGRIK--SIVPVGTPEYVAPE-VL 183
+HRD+ N+LL+ G + K+ DFG A + D N +K + +PV +++APE +
Sbjct: 161 NCIHRDLAARNVLLT-HGKIVKICDFGLARDIMNDSNYVVKGNARLPV---KWMAPESIF 216
Query: 184 EWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
+ YT D+WS G++ +E+ + GS P+
Sbjct: 217 NCV--------YTFESDVWSYGILLWEIFSLGSNPY 244
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 64.5 bits (157), Expect = 2e-10
Identities = 52/193 (26%), Positives = 79/193 (40%), Gaps = 32/193 (16%)
Query: 68 PYIVNLFYSFQDMNHVYF-IMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYL 126
P IV L S + + F + EYV G +L G L + + ++ A+
Sbjct: 38 PNIVALLDSGEAPPGLLFAVFEYVPGRTLREVLAAD--GALPAGETGRLMLQVLDALACA 95
Query: 127 HGLGYVHRDIKPDNMLLSATG---HLKLTDFG-----------SATQVDKNGRIKSIVPV 172
H G VHRD+KP N+++S TG H K+ DFG + + + +
Sbjct: 96 HNQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGTLLPGVRDADVATLTRTTEV-----L 150
Query: 173 GTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSILA 232
GTP Y APE L + T + DL++ G++ E LTG ++ L+
Sbjct: 151 GTPTYCAPEQLR-------GEPVTPNSDLYAWGLIFLECLTGQRVVQGASVAEILYQQLS 203
Query: 233 CDTEDTVSFPSSI 245
VS P I
Sbjct: 204 ---PVDVSLPPWI 213
>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine
Kinases, Lymphocyte-specific kinase and Blk. Protein
Tyrosine Kinase (PTK) family; Lck and Blk kinases;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Lck (lymphocyte-specific
kinase) and Blk are members of the Src subfamily of
proteins, which are cytoplasmic (or non-receptor) tyr
kinases. Src kinases contain an N-terminal SH4 domain
with a myristoylation site, followed by SH3 and SH2
domains, a tyr kinase domain, and a regulatory
C-terminal region containing a conserved tyr. They are
activated by autophosphorylation at the tyr kinase
domain, but are negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Lck is expressed in T-cells and natural
killer (NK) cells. It plays a critical role in T-cell
maturation, activation, and T-cell receptor (TCR)
signaling. Lck phosphorylates ITAM (immunoreceptor tyr
activation motif) sequences on several subunits of TCRs,
leading to the activation of different second messenger
cascades. Phosphorylated ITAMs serve as binding sites
for other signaling factor such as Syk and ZAP-70,
leading to their activation and propagation of
downstream events. In addition, Lck regulates
drug-induced apoptosis by interfering with the
mitochondrial death pathway. The apototic role of Lck is
independent of its primary function in T-cell signaling.
Blk is expressed specifically in B-cells. It is involved
in pre-BCR (B-cell receptor) signaling.
Length = 260
Score = 61.4 bits (149), Expect = 3e-10
Identities = 54/202 (26%), Positives = 100/202 (49%), Gaps = 21/202 (10%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLREKM--PNTI--ERDIMVKSKCPYIVNLFYSFQDM 80
G FG++++ +T V K L++ P E ++M + + P +V L Y+
Sbjct: 16 AGQFGEVWMGYYN--GHTKVAIKSLKQGSMSPEAFLAEANLMKQLQHPRLVRL-YAVVTQ 72
Query: 81 NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
+Y I EY+ G V L+ L+ +K ++A+ + ++ Y+HRD++ N
Sbjct: 73 EPIYIITEYMENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAAN 132
Query: 141 MLLSATGHLKLTDFGSATQVDKN---GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTG 197
+L+S T K+ DFG A ++ N R + P+ ++ APE + N+G+ +T
Sbjct: 133 ILVSETLCCKIADFGLARLIEDNEYTAREGAKFPI---KWTAPEAI-----NYGT--FTI 182
Query: 198 SCDLWSIGVVSYELLT-GSTPF 218
D+WS G++ E++T G P+
Sbjct: 183 KSDVWSFGILLTEIVTYGRIPY 204
>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional.
Length = 392
Score = 62.9 bits (153), Expect = 3e-10
Identities = 51/177 (28%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 44 VMKKVLREKMPNTIERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQP 103
++K V K P E DI+ I+NL ++++ + V +M D T ++
Sbjct: 123 IVKAVTGGKTPGR-EIDILKTISHRAIINLIHAYRWKSTVCMVMPKYKC-DLFTYVDRS- 179
Query: 104 HGYLSESKARFYIYE-LAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDK 162
G L +A I L +A+ YLHG G +HRD+K +N+ L + L DFG+A ++D
Sbjct: 180 -GPLPLEQA-ITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDA 237
Query: 163 N-GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPF 218
+ + GT E +PE+L D Y D+WS G+V +E+ +
Sbjct: 238 HPDTPQCYGWSGTLETNSPELL-------ALDPYCAKTDIWSAGLVLFEMSVKNVTL 287
>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine
Kinases, Tropomyosin Related Kinases. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase (Trk)
subfamily; catalytic (c) domain. The Trk subfamily
consists of TrkA, TrkB, TrkC, and similar proteins. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Trk
subfamily members are receptor tyr kinases (RTKs)
containing an extracellular region with arrays of
leucine-rich motifs flanked by two cysteine-rich
clusters followed by two immunoglobulin-like domains, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, the nerve growth
factor (NGF) family of neutrotrophins, leads to Trk
receptor oligomerization and activation of the catalytic
domain. Trk receptors are mainly expressed in the
peripheral and central nervous systems. They play
important roles in cell fate determination, neuronal
survival and differentiation, as well as in the
regulation of synaptic plasticity. Altered expression of
Trk receptors is associated with many human diseases.
Length = 280
Score = 61.7 bits (150), Expect = 3e-10
Identities = 55/234 (23%), Positives = 99/234 (42%), Gaps = 37/234 (15%)
Query: 12 VSASDFDIKRFIQQGNFGDIYLVE----EKQSHNTFVMKKVLREKMPNTIERD------I 61
V +KR + +G FG ++L E E ++ V K L+E N +D +
Sbjct: 2 VQRDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAEL 61
Query: 62 MVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLL------------ENQPHGYLSE 109
+ + IV + + + + EY+ GD L + P G L+
Sbjct: 62 LTNFQHENIVKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTL 121
Query: 110 SKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNG--RIK 167
S+ ++A + YL +VHRD+ N L+ +K+ DFG + V R+
Sbjct: 122 SQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVG 181
Query: 168 --SIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
+++P+ ++ PE + + + +T D+WS GVV +E+ T G P+
Sbjct: 182 GHTMLPI---RWMPPESIMYRK-------FTTESDVWSFGVVLWEIFTYGKQPW 225
>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 1. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK1 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like
JNK2, is expressed in every cell and tissue type.
Initially it was thought that JNK1 and JNK2 were
functionally redundant as mice deficient in either genes
(Jnk1 or Jnk2) could survive but disruption of both
genes resulted in lethality. However, recent studies
have shown that JNK1 and JNK2 perform distinct functions
through specific binding partners and substrates. JNK1
specifically binds with JAMP (JNK1-associated membrane
protein), which regulates the duration of JNK1 activity
in response to stimuli. Specific JNK1 substrates include
Itch and SG10, which are implicated in Th2 responses and
airway inflammation, and microtubule dynamics and
axodendritic length, respectively. Mice deficient in
Jnk1 are protected against arthritis, obesity, type 2
diabetes, cardiac cell death, and non-alcoholic liver
disease, suggesting that JNK1 may play roles in the
pathogenesis of these diseases.
Length = 364
Score = 62.0 bits (150), Expect = 5e-10
Identities = 39/143 (27%), Positives = 72/143 (50%), Gaps = 14/143 (9%)
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
S ++ VY +ME + + +++ + L + + +Y++ +++LH G +HRD
Sbjct: 97 SLEEFQDVYIVME-LMDANLCQVIQME----LDHERMSYLLYQMLCGIKHLHSAGIIHRD 151
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
+KP N+++ + LK+ DFG A + + V T Y APEV+ M GY
Sbjct: 152 LKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVV--TRYYRAPEVILGM-------GY 202
Query: 196 TGSCDLWSIGVVSYELLTGSTPF 218
+ D+WS+G + E++ G F
Sbjct: 203 KENVDIWSVGCIMGEMIKGGVLF 225
>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent
protein Kinase 8-like Serine/Threonine Kinases.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8)-like subfamily, catalytic (c)
domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDK8-like subfamily
is part of a larger superfamily that includes the
catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. CDKs belong to a large family of STKs that are
regulated by their cognate cyclins. Together, they are
involved in the control of cell-cycle progression,
transcription, and neuronal function. This subfamily is
composed of CDK8, CDC2L6, and similar proteins. CDK8
functions as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDC2L6 also associates with
Mediator in complexes lacking CDK8. In VP16-dependent
transcriptional activation, CDK8 and CDC2L6 exerts
opposing effects by positive and negative regulation,
respectively, in similar conditions.
Length = 316
Score = 60.8 bits (148), Expect = 7e-10
Identities = 59/244 (24%), Positives = 106/244 (43%), Gaps = 46/244 (18%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNT--FVMKKVLREK-----MPNTIERDIMVKSKC-- 67
++I+ I +G +G +Y + K + + +KK +K + + R+I + +
Sbjct: 2 YEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKH 61
Query: 68 PYIVNL---FYSFQDMNHVYFIMEYVTGGDFVTLLENQPH---GYLSESKARFYIYELAQ 121
+V+L F D + VY + +Y D +++ + S + ++++
Sbjct: 62 ENVVSLVEVFLEHADKS-VYLLFDY-AEHDLWQIIKFHRQAKRVSIPPSMVKSLLWQILN 119
Query: 122 AVQYLHGLGYVHRDIKPDNMLLSA----TGHLKLTDFGSATQVDKNGRIKSIV----PVG 173
V YLH +HRD+KP N+L+ G +K+ D G A + +K + V
Sbjct: 120 GVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAP--LKPLADLDPVVV 177
Query: 174 TPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-------------GSTPFNY 220
T Y APE+L G+ YT + D+W+IG + ELLT S PF
Sbjct: 178 TIWYRAPELL------LGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQR 231
Query: 221 ETLD 224
+ L+
Sbjct: 232 DQLE 235
>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Ephrin Receptor (EphR) subfamily; catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). They can be classified into two classes (EphA
and EphB), according to their extracellular sequences,
which largely correspond to binding preferences for
either GPI-anchored ephrin-A ligands or transmembrane
ephrin-B ligands. Vertebrates have ten EphA and six EhpB
receptors, which display promiscuous ligand interactions
within each class. EphRs contain an ephrin binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. This allows ephrin/EphR dimers to form,
leading to the activation of the intracellular tyr
kinase domain. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). The main effect of ephrin/EphR interaction
is cell-cell repulsion or adhesion. Ephrin/EphR
signaling is important in neural development and
plasticity, cell morphogenesis and proliferation,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis.
Length = 266
Score = 60.0 bits (146), Expect = 7e-10
Identities = 55/226 (24%), Positives = 95/226 (42%), Gaps = 36/226 (15%)
Query: 12 VSASDFDIKRFIQQGNFGDIYL----VEEKQSHNTFVMKKVLREKMPNTIERD------I 61
+ S I++ I G FG++ + K+ V K L+ + D I
Sbjct: 1 IDPSYVTIEKVIGGGEFGEVCRGRLKLPGKKEI--DVAIKTLKAGSSDKQRLDFLTEASI 58
Query: 62 MVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQ 121
M + P I+ L V I EY+ G L G + + + +A
Sbjct: 59 MGQFDHPNIIRLEGVVTKSRPVMIITEYMENGSLDKFLREN-DGKFTVGQLVGMLRGIAS 117
Query: 122 AVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFG--------SATQVDKNGRIKSIVPVG 173
++YL + YVHRD+ N+L+++ K++DFG AT K G+I P+
Sbjct: 118 GMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKI----PI- 172
Query: 174 TPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
+ APE + + +T + D+WS G+V +E+++ G P+
Sbjct: 173 --RWTAPEAI-----AYRK--FTSASDVWSFGIVMWEVMSYGERPY 209
>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine
Kinase, PCTAIRE-2 kinase. Serine/Threonine Kinases
(STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The PCTAIRE-2 subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. PCTAIRE-2 shares sequence
similarity with Cyclin-Dependent Kinases (CDKs), which
belong to a large family of STKs that are regulated by
their cognate cyclins. Together, CDKs and cyclins are
involved in the control of cell-cycle progression,
transcription, and neuronal function. PCTAIRE-2 is
specifically expressed in neurons in the central nervous
system, mainly in terminally differentiated neurons. It
associates with Trap (Tudor repeat associator with
PCTAIRE-2) and could play a role in regulating
mitochondrial function in neurons.
Length = 309
Score = 60.4 bits (146), Expect = 1e-09
Identities = 39/125 (31%), Positives = 62/125 (49%), Gaps = 21/125 (16%)
Query: 107 LSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRI 166
+S + ++Y++ + + Y H +HRD+KP N+L++ G LKL DFG A R
Sbjct: 101 MSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLA-------RA 153
Query: 167 KSIVPVGTPE-------YVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFN 219
KS VP T Y P+VL GS Y+ D+W +G + +E+ +G F
Sbjct: 154 KS-VPTKTYSNEVVTLWYRPPDVL------LGSSEYSTQIDMWGVGCIFFEMASGRPLFP 206
Query: 220 YETLD 224
T++
Sbjct: 207 GSTVE 211
>gnl|CDD|133202 cd05071, PTKc_Src, Catalytic domain of the Protein Tyrosine Kinase,
Src. Protein Tyrosine Kinase (PTK) family; Src kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Src (or c-Src) is a
cytoplasmic (or non-receptor) tyr kinase, containing an
N-terminal SH4 domain with a myristoylation site,
followed by SH3 and SH2 domains, a tyr kinase domain,
and a regulatory C-terminal region with a conserved tyr.
It is activated by autophosphorylation at the tyr kinase
domain, and is negatively regulated by phosphorylation
at the C-terminal tyr by Csk (C-terminal Src Kinase).
c-Src is the vertebrate homolog of the oncogenic protein
(v-Src) from Rous sarcoma virus. Together with other Src
subfamily proteins, it is involved in signaling pathways
that regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Src also play a role in regulating cell
adhesion, invasion, and motility in cancer cells and
tumor vasculature, contributing to cancer progression
and metastasis. Elevated levels of Src kinase activity
have been reported in a variety of human cancers.
Several inhibitors of Src have been developed as
anti-cancer drugs. Src is also implicated in acute
inflammatory responses and osteoclast function.
Length = 262
Score = 59.7 bits (144), Expect = 1e-09
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 31/215 (14%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-------ERDIMVKSKCPYIVNLFYSF 77
QG FG++++ + T V K L+ P T+ E +M K + +V L Y+
Sbjct: 16 QGCFGEVWM--GTWNGTTRVAIKTLK---PGTMSPEAFLQEAQVMKKLRHEKLVQL-YAV 69
Query: 78 QDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIK 137
+Y + EY++ G + L+ + YL + ++A + Y+ + YVHRD++
Sbjct: 70 VSEEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLR 129
Query: 138 PDNMLLSATGHLKLTDFGSATQVDKN---GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
N+L+ K+ DFG A ++ N R + P+ ++ APE +
Sbjct: 130 AANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPI---KWTAPEAALYGR------- 179
Query: 195 YTGSCDLWSIGVVSYELLT-GSTPF----NYETLD 224
+T D+WS G++ EL T G P+ N E LD
Sbjct: 180 FTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLD 214
>gnl|CDD|173767 cd08227, PK_STRAD_alpha, Pseudokinase domain of STE20-related
kinase adapter protein alpha. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) alpha
subfamily, pseudokinase domain. The STRAD alpha
subfamily is part of a larger superfamily that includes
the catalytic domains of serine/threonine kinases
(STKs), protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. The pseudokinase domain shows
similarity to protein kinases but lacks crucial residues
for catalytic activity. STRAD forms a complex with the
scaffolding protein MO25, and the STK, LKB1, resulting
in the activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. The structure of STRAD-alpha is available and
shows that this protein binds ATP, has an ordered
activation loop, and adopts a closed conformation
typical of fully active protein kinases. It does not
possess activity due to nonconservative substitutions of
essential catalytic residues. ATP binding enhances the
affinity of STRAD for MO25. The conformation of
STRAD-alpha, stabilized through ATP and MO25, may be
needed to activate LKB1. A mutation which results in a
truncation of a C-terminal part of the human STRAD-alpha
pseudokinase domain and disrupts its association with
LKB1, leads to PMSE (polyhydramnios, megalencephaly,
symptomatic epilepsy) syndrome. Several splice variants
of STRAD-alpha exist which exhibit different effects on
the localization and activation of LKB1.
Length = 327
Score = 60.0 bits (145), Expect = 1e-09
Identities = 66/274 (24%), Positives = 114/274 (41%), Gaps = 44/274 (16%)
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
P IV +F N ++ + ++ G L+ +SE + + + +A+ Y+H
Sbjct: 59 PNIVPYRATFIADNELWVVTSFMAYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIH 118
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIV------PVGTPEYVAPE 181
+GYVHR +K ++L+S G + L+ S + +G+ +V V +++PE
Sbjct: 119 HMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPE 178
Query: 182 VLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFN--------YETLDMTYSSILAC 233
VL+ GY D++S+G+ + EL G PF E L+ T +L
Sbjct: 179 VLQ-----QNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLL-- 231
Query: 234 DTEDTVSFPSS---IRLSTAMVN--FVQSLVQKLDARLNMDQVLGHP------------V 276
DT + P+ ++ S + N +S N + HP V
Sbjct: 232 ---DTTTIPAEELTMKPSRSGANSGLGESTTVSTPRPSNGESSS-HPYNRTFSPHFHHFV 287
Query: 277 FDCLDSDPPCIPPPSQ--ENKFHKKDKRKASPSL 308
CL +P P S + F K+ KR+AS +L
Sbjct: 288 EQCLQRNPDARPSASTLLNHSFFKQIKRRASEAL 321
>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; catalytic (c) domain (repeat 2). The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal catalytic tyr kinase domain. Jaks are
crucial for cytokine receptor signaling. They are
activated by autophosphorylation upon cytokine-induced
receptor aggregation, and subsequently trigger
downstream signaling events such as the phosphorylation
of signal transducers and activators of transcription
(STATs). Jak2 is widely expressed in many tissues while
Jak3 is expressed only in hematopoietic cells. Jak2 is
essential for the signaling of hormone-like cytokines
such as growth hormone, erythropoietin, thrombopoietin,
and prolactin, as well as some IFNs and cytokines that
signal through the IL-3 and gp130 receptors. Jak3 binds
the shared receptor subunit common gamma chain and thus,
is essential in the signaling of cytokines that use it
such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21.
Disruption of Jak2 in mice results in an embryonic
lethal phenotype with multiple defects including
erythropoietic and cardiac abnormalities. It is the only
Jak gene that results in a lethal phenotype when
disrupted in mice. A mutation in the pseudokinase domain
of Jak2, V617F, is present in many myeloproliferative
diseases, including almost all patients with
polycythemia vera, and 50% of patients with essential
thrombocytosis and myelofibrosis. Jak3 is important in
lymphoid development and myeloid cell differentiation.
Inactivating mutations in Jak3 have been reported in
humans with severe combined immunodeficiency (SCID).
Length = 284
Score = 59.0 bits (143), Expect = 2e-09
Identities = 64/214 (29%), Positives = 96/214 (44%), Gaps = 31/214 (14%)
Query: 21 RFIQQ---GNFGDIYLVE-EKQSHNT--FVMKKVLREKMPNTI---ERDI-MVKS-KCPY 69
+FIQQ GNFG + L + NT V K L+ + ER+I ++KS +
Sbjct: 7 KFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDN 66
Query: 70 IVN---LFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYL 126
IV + YS N + +MEY+ G L+ L K Y ++ + ++YL
Sbjct: 67 IVKYKGVCYSAGRRN-LRLVMEYLPYGSLRDYLQKHRE-RLDHRKLLLYASQICKGMEYL 124
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPE-----YVAPE 181
YVHRD+ N+L+ + +K+ DFG + ++ K V P + APE
Sbjct: 125 GSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQD---KEYYKVREPGESPIFWYAPE 181
Query: 182 VLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGS 215
L + + S D+WS GVV YEL T S
Sbjct: 182 SLTESKFSVAS-------DVWSFGVVLYELFTYS 208
>gnl|CDD|173766 cd08226, PK_STRAD_beta, Pseudokinase domain of STE20-related kinase
adapter protein beta. Protein Kinase family,
STE20-related kinase adapter protein (STRAD) beta
subfamily, pseudokinase domain. The STRAD-beta subfamily
is part of a larger superfamily that includes the
catalytic domains of serine/threonine kinases (STKs),
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. The pseudokinase domain shows similarity to
protein kinases but lacks crucial residues for catalytic
activity. STRAD forms a complex with the scaffolding
protein MO25, and the STK, LKB1, resulting in the
activation of the kinase. In the complex, LKB1
phosphorylates and activates adenosine
monophosphate-activated protein kinases (AMPKs), which
regulate cell energy metabolism and cell polarity. LKB1
is a tumor suppressor linked to the rare inherited
disease, Peutz-Jeghers syndrome, which is characterized
by a predisposition to benign polyps and
hyperpigmentation of the buccal mucosa. There are two
forms of STRAD, alpha and beta, that complex with LKB1
and MO25. STRAD-beta is also referred to as ALS2CR2
(Amyotrophic lateral sclerosis 2 chromosomal region
candidate gene 2 protein), since the human gene encoding
it is located within the juvenile ALS2 critical region
on chromosome 2q33-q34. It is not linked to the
development of ALS2.
Length = 328
Score = 59.6 bits (144), Expect = 2e-09
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 11/168 (6%)
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQ-PHGYLSESKARFYIYELAQAVQYL 126
P I+ + F + ++ I ++ G +LL+ P G +SE+ ++ + + YL
Sbjct: 59 PNIMTSWTVFTTGSWLWVISPFMAYGSANSLLKTYFPEG-MSEALIGNILFGALRGLNYL 117
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWM 186
H GY+HR+IK ++L+S G + L+ + +NG+ K+ V P++ + VL W+
Sbjct: 118 HQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQ-KAKVVYDFPQF-STSVLPWL 175
Query: 187 EGN---HGSDGYTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSIL 231
GY D++S+G+ + EL TG PF DM + +L
Sbjct: 176 SPELLRQDLYGYNVKSDIYSVGITACELATGRVPF----QDMLRTQML 219
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 59.7 bits (144), Expect = 2e-09
Identities = 39/138 (28%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
S ++ VY +ME + + +++ + L + + +Y++ +++LH G +HRD
Sbjct: 90 SLEEFQDVYLVME-LMDANLCQVIQME----LDHERMSYLLYQMLCGIKHLHSAGIIHRD 144
Query: 136 IKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVP-VGTPEYVAPEVLEWMEGNHGSDG 194
+KP N+++ + LK+ DFG A G + P V T Y APEV+ M G
Sbjct: 145 LKPSNIVVKSDCTLKILDFGLARTA---GTSFMMTPYVVTRYYRAPEVILGM-------G 194
Query: 195 YTGSCDLWSIGVVSYELL 212
Y + D+WS+G + E++
Sbjct: 195 YKENVDIWSVGCIMGEMV 212
>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine
Kinases, Class EphA Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
most class EphA receptors including EphA3, EphA4, EphA5,
and EphA7, but excluding EphA1, EphA2 and EphA10;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. EphRs comprise the
largest subfamily of receptor tyr kinases (RTKs). In
general, class EphA receptors bind GPI-anchored ephrin-A
ligands. There are ten vertebrate EphA receptors
(EphA1-10), which display promiscuous interactions with
six ephrin-A ligands. One exception is EphA4, which also
binds ephrins-B2/B3. EphRs contain an ephrin-binding
domain and two fibronectin repeats extracellularly, a
transmembrane segment, and a cytoplasmic tyr kinase
domain. Binding of the ephrin ligand to EphR requires
cell-cell contact since both are anchored to the plasma
membrane. The resulting downstream signals occur
bidirectionally in both EphR-expressing cells (forward
signaling) and ephrin-expressing cells (reverse
signaling). Ephrin/EphR interaction mainly results in
cell-cell repulsion or adhesion, making it important in
neural development and plasticity, cell morphogenesis,
cell-fate determination, embryonic development, tissue
patterning, and angiogenesis. EphARs and ephrin-A
ligands are expressed in multiple areas of the
developing brain, especially in the retina and tectum.
They are part of a system controlling retinotectal
mapping.
Length = 267
Score = 58.8 bits (142), Expect = 2e-09
Identities = 56/232 (24%), Positives = 98/232 (42%), Gaps = 47/232 (20%)
Query: 12 VSASDFDIKRFIQQGNFGDIYLVEEK--QSHNTFVMKKVLREKMPNTIERD------IMV 63
+ AS I++ I G FG++ K V K L+ RD IM
Sbjct: 1 IDASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMG 60
Query: 64 KSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYEL---- 119
+ P I++L V + EY+ G +L + +F + +L
Sbjct: 61 QFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDA--------FLRKHDGQFTVIQLVGML 112
Query: 120 ---AQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFG---------SATQVDKNGRIK 167
A ++YL +GYVHRD+ N+L+++ K++DFG A + G+I
Sbjct: 113 RGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKI- 171
Query: 168 SIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
P+ + APE + + + +T + D+WS G+V +E+++ G P+
Sbjct: 172 ---PI---RWTAPEAIAYRK-------FTSASDVWSYGIVMWEVMSYGERPY 210
>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional.
Length = 501
Score = 59.7 bits (144), Expect = 3e-09
Identities = 39/133 (29%), Positives = 61/133 (45%), Gaps = 14/133 (10%)
Query: 111 KARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIV 170
+ R + +L AV+Y+H +HRDIK +N+ L+ G + L DFG+A +K
Sbjct: 268 QTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYG 327
Query: 171 PVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-------GSTPFNYETL 223
VGT +PE+L DGY D+WS G++ ++L+ + L
Sbjct: 328 WVGTVATNSPEIL-------AGDGYCEITDIWSCGLILLDMLSHDFCPIGDGGGKPGKQL 380
Query: 224 DMTYSSILACDTE 236
S+ CD E
Sbjct: 381 LKIIDSLSVCDEE 393
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 58.2 bits (141), Expect = 3e-09
Identities = 52/223 (23%), Positives = 101/223 (45%), Gaps = 26/223 (11%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPN-----TIERDIMVKSKCPY 69
+F ++R + G FG+++ E + V K+L+ E + + + +
Sbjct: 6 EEFTLERKLGSGYFGEVW--EGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKH 63
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYI-YELAQAVQYLHG 128
+++LF VY I E + G + L + P G + + + ++A+ + YL
Sbjct: 64 LISLFAVCSVGEPVYIITELMEKGSLLAFLRS-PEGQVLPVASLIDMACQVAEGMAYLEE 122
Query: 129 LGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKS--IVPVGTPEYVAPEVLEWM 186
+HRD+ N+L+ K+ DFG A + ++ + S +P ++ APE
Sbjct: 123 QNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPY---KWTAPEAA--- 176
Query: 187 EGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----NYETLD 224
+HG+ ++ D+WS G++ YE+ T G P+ N+E D
Sbjct: 177 --SHGT--FSTKSDVWSFGILLYEMFTYGQVPYPGMNNHEVYD 215
>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 4.
Serine/Threonine Kinases (STKs), Cyclin-dependent
protein kinase 4 (CDK4) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK4 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK4
partners with all three D-type cyclins (D1, D2, and D3)
and is also regulated by INK4 inhibitors. It is active
towards the retinoblastoma (pRb) protein and plays a
role in regulating the early G1 phase of the cell cycle.
It is expressed ubiquitously and is localized in the
nucleus. CDK4 also shows kinase activity towards Smad3,
a signal transducer of transforming growth factor
(TGF)-beta signaling which modulates transcription and
plays a role in cell proliferation and apoptosis. CDK4
is inhibited by the p21 inhibitor and is specifically
mutated in human melanoma.
Length = 288
Score = 58.1 bits (140), Expect = 4e-09
Identities = 59/210 (28%), Positives = 90/210 (42%), Gaps = 36/210 (17%)
Query: 23 IQQGNFGDIYLVEEKQSHNTFVMKKVLR-----EKMPNTIERDIMVKSKC-----PYIVN 72
I G +G +Y + S FV K +R + +P + R++ + + P IV
Sbjct: 8 IGVGAYGTVYKARDPHS-GHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVR 66
Query: 73 LF----YSFQDMN-HVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLH 127
L S D V + E+V D T L+ P L + + + + + +LH
Sbjct: 67 LMDVCATSRTDRETKVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLH 125
Query: 128 GLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPE-----YVAPEV 182
VHRD+KP+N+L+++ G +KL DFG A RI S TP Y APEV
Sbjct: 126 ANCIVHRDLKPENILVTSGGQVKLADFGLA-------RIYSCQMALTPVVVTLWYRAPEV 178
Query: 183 LEWMEGNHGSDGYTGSCDLWSIGVVSYELL 212
L Y D+WS+G + E+
Sbjct: 179 LL-------QSTYATPVDMWSVGCIFAEMF 201
>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase,
Hematopoietic cell kinase. Protein Tyrosine Kinase
(PTK) family; Hematopoietic cell kinase (Hck); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Hck is a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Hck is present in myeloid and lymphoid
cells that play a role in the development of cancer. It
may be important in the oncogenic signaling of the
protein Tel-Abl, which induces a chronic myelogenous
leukemia (CML)-like disease. Hck also acts as a negative
regulator of granulocyte colony-stimulating factor
(G-CSF)-induced proliferation of granulocytic
precursors, suggesting a possible role in the
development of acute myeloid leukemia (AML). In
addition, Hck is essential in regulating the
degranulation of polymorphonuclear leukocytes (PMNs).
Genetic polymorphisms affect the expression level of
Hck, which affects PMN mediator release and influences
the development of chronic obstructive pulmonary disease
(COPD).
Length = 260
Score = 57.7 bits (139), Expect = 5e-09
Identities = 38/140 (27%), Positives = 72/140 (51%), Gaps = 14/140 (10%)
Query: 83 VYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNML 142
+Y I E++ G + L++ K + ++A+ + ++ Y+HRD++ N+L
Sbjct: 75 IYIITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANIL 134
Query: 143 LSATGHLKLTDFGSATQVDKN---GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSC 199
+SA+ K+ DFG A ++ N R + P+ ++ APE + N GS +T
Sbjct: 135 VSASLVCKIADFGLARVIEDNEYTAREGAKFPI---KWTAPEAI-----NFGS--FTIKS 184
Query: 200 DLWSIGVVSYELLT-GSTPF 218
D+WS G++ E++T G P+
Sbjct: 185 DVWSFGILLMEIVTYGRIPY 204
>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase C. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase C
(TrkC); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkC is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkC
to its ligand, neurotrophin 3 (NT3), results in receptor
oligomerization and activation of the catalytic domain.
TrkC is broadly expressed in the nervous system and in
some non-neural tissues including the developing heart.
NT3/TrkC signaling plays an important role in the
innervation of the cardiac conducting system and the
development of smooth muscle cells. Mice deficient with
NT3 and TrkC have multiple heart defects. NT3/TrkC
signaling is also critical for the development and
maintenance of enteric neurons that are important for
the control of gut peristalsis.
Length = 291
Score = 57.7 bits (139), Expect = 6e-09
Identities = 57/259 (22%), Positives = 111/259 (42%), Gaps = 46/259 (17%)
Query: 11 NVSASDFDIKRFIQQGNFGDIYLVE----EKQSHNTFVMKKVLREKMPNTIER------- 59
++ D +KR + +G FG ++L E V K L++ P R
Sbjct: 1 HIKRRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKD--PTLAARKDFQREA 58
Query: 60 DIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDF-----------VTLLENQP---HG 105
+++ + +IV + D + + + EY+ GD + L++ QP G
Sbjct: 59 ELLTNLQHEHIVKFYGVCGDGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKG 118
Query: 106 YLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGR 165
L S+ ++A + YL +VHRD+ N L+ A +K+ DFG + V
Sbjct: 119 ELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDY 178
Query: 166 IK----SIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPFNY 220
+ +++P+ ++ PE + + + +T D+WS GV+ +E+ T G P+
Sbjct: 179 YRVGGHTMLPI---RWMPPESIMYRK-------FTTESDVWSFGVILWEIFTYGKQPW-- 226
Query: 221 ETLDMTYSSILACDTEDTV 239
++ + ++ C T+ V
Sbjct: 227 --FQLSNTEVIECITQGRV 243
>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase B. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase B
(TrkB); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkB is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkB
to its ligands, brain-derived neurotrophic factor (BDNF)
or neurotrophin 4 (NT4), results in receptor
oligomerization and activation of the catalytic domain.
TrkB is broadly expressed in the nervous system and in
some non-neural tissues. It plays important roles in
cell proliferation, differentiation, and survival.
BDNF/Trk signaling plays a key role in regulating
activity-dependent synaptic plasticity. TrkB also
contributes to protection against gp120-induced neuronal
cell death. TrkB overexpression is associated with poor
prognosis in neuroblastoma (NB) and other human cancers.
It acts as a suppressor of anoikis (detachment-induced
apoptosis) and contributes to tumor metastasis.
Length = 288
Score = 57.8 bits (139), Expect = 6e-09
Identities = 53/246 (21%), Positives = 107/246 (43%), Gaps = 39/246 (15%)
Query: 19 IKRFIQQGNFGDIYLVEE----KQSHNTFVMKKVLREKMPNTI-----ERDIMVKSKCPY 69
+KR + +G FG ++L E + V K L++ N E +++ + +
Sbjct: 9 LKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEH 68
Query: 70 IVNLFYSFQDMNHVYFIMEYVTGGDF-----------VTLLENQPHGYLSESKARFYIYE 118
IV + + + + + EY+ GD V + E L++S+ +
Sbjct: 69 IVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQ 128
Query: 119 LAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIK----SIVPVGT 174
+A + YL +VHRD+ N L+ +K+ DFG + V + +++P+
Sbjct: 129 IAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPI-- 186
Query: 175 PEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPFNYETLDMTYSSILAC 233
++ PE + + + +T D+WS+GVV +E+ T G P+ ++ + ++ C
Sbjct: 187 -RWMPPESIMYRK-------FTTESDVWSLGVVLWEIFTYGKQPW----YQLSNNEVIEC 234
Query: 234 DTEDTV 239
T+ V
Sbjct: 235 ITQGRV 240
>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional.
Length = 391
Score = 58.1 bits (140), Expect = 8e-09
Identities = 41/118 (34%), Positives = 60/118 (50%), Gaps = 16/118 (13%)
Query: 121 QAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSAT-QVDKNGRIKSIVPVGTPEYVA 179
+A+QYLH +HRDIK +N+ ++ G + L DFG+A VD N K GT A
Sbjct: 193 RAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINAN-KYYGWAGTIATNA 251
Query: 180 PEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTG-STPFNYETLDMTYSSILACDTE 236
PE+L D Y + D+WS G+V +E+ T + F + LD CD++
Sbjct: 252 PELL-------ARDPYGPAVDIWSAGIVLFEMATCHDSLFEKDGLDGD------CDSD 296
>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Tyrosine kinase expressed in hepatocellular carcinoma
(Tec) subfamily; catalytic (c) domain. The Tec subfamily
is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk
(Txk), and similar proteins. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tec kinases are
cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with
similarity to Src kinases in that they contain Src
homology protein interaction domains (SH3, SH2)
N-terminal to the catalytic tyr kinase domain. Unlike
Src kinases, most Tec subfamily members (except Rlk)
also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, some
members contain the Tec homology (TH) domain, which
contains proline-rich and zinc-binding regions. Tec
kinases form the second largest subfamily of nRTKs and
are expressed mainly by haematopoietic cells, although
Tec and Bmx are also found in endothelial cells. B-cells
express Btk and Tec, while T-cells express Itk, Txk, and
Tec. Collectively, Tec kinases are expressed in a
variety of myeloid cells such as mast cells, platelets,
macrophages, and dendritic cells. Each Tec kinase shows
a distinct cell-type pattern of expression. The function
of Tec kinases in lymphoid cells have been studied
extensively. They play important roles in the
development, differentiation, maturation, regulation,
survival, and function of B-cells and T-cells. Mutations
in Btk cause the severe B-cell immunodeficiency,
X-linked agammaglobulinaemia (XLA).
Length = 256
Score = 56.7 bits (137), Expect = 9e-09
Identities = 42/179 (23%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 58 ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIY 117
E +M+K P +V L+ ++ + EY+ G + L + +E ++
Sbjct: 49 EAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMANGCLLNYLRERKGKLGTE-----WLL 103
Query: 118 ELAQ----AVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVG 173
++ A++YL G++HRD+ N L+ +K++DFG A V + S G
Sbjct: 104 DMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSS---QG 160
Query: 174 TP---EYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----NYETLD 224
T ++ PEV ++ ++ D+WS GV+ +E+ + G P+ N E ++
Sbjct: 161 TKFPVKWAPPEVF-----DYSR--FSSKSDVWSFGVLMWEVFSEGKMPYERFSNSEVVE 212
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 56.5 bits (136), Expect = 1e-08
Identities = 55/215 (25%), Positives = 97/215 (45%), Gaps = 31/215 (14%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-------ERDIMVKSKCPYIVNLFYSF 77
G FG++++ + NT V K L+ P T+ E IM K + +V L Y+
Sbjct: 16 NGQFGEVWM--GTWNGNTKVAVKTLK---PGTMSPESFLEEAQIMKKLRHDKLVQL-YAV 69
Query: 78 QDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIK 137
+Y + EY++ G + L++ L ++A + Y+ + Y+HRD++
Sbjct: 70 VSEEPIYIVTEYMSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLR 129
Query: 138 PDNMLLSATGHLKLTDFGSATQVDKN---GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
N+L+ K+ DFG A ++ N R + P+ ++ APE +
Sbjct: 130 SANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPI---KWTAPEAALYGR------- 179
Query: 195 YTGSCDLWSIGVVSYELLT-GSTPF----NYETLD 224
+T D+WS G++ EL+T G P+ N E L+
Sbjct: 180 FTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLE 214
>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like
Protein Tyrosine Kinases. Protein Tyrosine Kinase (PTK)
family; Human Fyn-related kinase (Frk) and similar
proteins; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Frk and
Srk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Frk, also known as Rak, is specifically
expressed in liver, lung, kidney, intestine, mammary
glands, and the islets of Langerhans. Rodent homologs
were previously referred to as GTK (gastrointestinal tyr
kinase), BSK (beta-cell Src-like kinase), or IYK
(intestinal tyr kinase). Studies in mice reveal that Frk
is not essential for viability. It plays a role in the
signaling that leads to cytokine-induced beta-cell death
in Type I diabetes. It also regulates beta-cell number
during embryogenesis and early in life.
Length = 261
Score = 56.3 bits (136), Expect = 1e-08
Identities = 52/222 (23%), Positives = 95/222 (42%), Gaps = 30/222 (13%)
Query: 19 IKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTI-------ERDIMVKSKCPYIV 71
+ R + G FG+++ E ++ T V K L+ P T+ E IM K + P ++
Sbjct: 10 LLRKLGAGQFGEVW--EGLWNNTTPVAVKTLK---PGTMDPKDFLAEAQIMKKLRHPKLI 64
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
L+ +Y + E + G + L+ L + ++A + YL Y
Sbjct: 65 QLYAVCTLEEPIYIVTELMKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNY 124
Query: 132 VHRDIKPDNMLLSATGHLKLTDFGSATQVDKN---GRIKSIVPVGTPEYVAPEVLEWMEG 188
+HRD+ N+L+ K+ DFG A + ++ R + P+ ++ APE
Sbjct: 125 IHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPI---KWTAPEAAL---- 177
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----NYETLDM 225
+ ++ D+WS G++ E++T G P+ N E L
Sbjct: 178 ---YNRFSIKSDVWSFGILLTEIVTYGRMPYPGMTNAEVLQQ 216
>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine
Kinases, Bruton's tyrosine kinase and Bone marrow kinase
on the X chromosome. Protein Tyrosine Kinase (PTK)
family; Bruton's tyrosine kinase (Btk) and Bone marrow
kinase on the X chromosome (Bmx); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Btk and
Bmx (also named Etk) are members of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Btk
contains the Tec homology (TH) domain with proline-rich
and zinc-binding regions. Tec kinases are expressed
mainly by haematopoietic cells. Btk is expressed in
B-cells, and a variety of myeloid cells including mast
cells, platelets, neutrophils, and dendrictic cells. It
interacts with a variety of partners, from cytosolic
proteins to nuclear transcription factors, suggesting a
diversity of functions. Stimulation of a diverse array
of cell surface receptors, including antigen engagement
of the B-cell receptor (BCR), leads to PH-mediated
membrane translocation of Btk and subsequent
phosphorylation by Src kinase and activation. Btk plays
an important role in the life cycle of B-cells including
their development, differentiation, proliferation,
survival, and apoptosis. Mutations in Btk cause the
primary immunodeficiency disease, X-linked
agammaglobulinaemia (XLA) in humans. Bmx is primarily
expressed in bone marrow and the arterial endothelium,
and plays an important role in ischemia-induced
angiogenesis. It facilitates arterial growth, capillary
formation, vessel maturation, and bone marrow-derived
endothelial progenitor cell mobilization.
Length = 256
Score = 56.4 bits (136), Expect = 1e-08
Identities = 39/172 (22%), Positives = 77/172 (44%), Gaps = 13/172 (7%)
Query: 58 ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIY 117
E +M+K +V L+ +Y + EY++ G + L S+
Sbjct: 49 EAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYMSNGCLLNYLREHGKR-FQPSQLLEMCK 107
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEY 177
++ + + YL ++HRD+ N L+ G +K++DFG + V + S+ +
Sbjct: 108 DVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRW 167
Query: 178 VAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----NYETLD 224
PEVL + + ++ D+W+ GV+ +E+ + G P+ N ET++
Sbjct: 168 SPPEVLLYSK-------FSSKSDVWAFGVLMWEVYSLGKMPYERFNNSETVE 212
>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine
Kinase, Tropomyosin Related Kinase A. Protein Tyrosine
Kinase (PTK) family; Tropomyosin Related Kinase A
(TrkA); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. TrkA is a member of the
Trk subfamily of proteins, which are receptor tyr
kinases (RTKs) containing an extracellular region with
arrays of leucine-rich motifs flanked by two
cysteine-rich clusters followed by two
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. Binding of TrkA
to its ligand, nerve growth factor (NGF), results in
receptor oligomerization and activation of the catalytic
domain. TrkA is expressed mainly in neural-crest-derived
sensory and sympathetic neurons of the peripheral
nervous system, and in basal forebrain cholinergic
neurons of the central nervous system. It is critical
for neuronal growth, differentiation and survival.
Alternative TrkA splicing has been implicated as a
pivotal regulator of neuroblastoma (NB) behavior. Normal
TrkA expression is associated with better NB prognosis,
while the hypoxia-regulated TrkAIII splice variant
promotes NB pathogenesis and progression. Aberrant TrkA
expression has also been demonstrated in non-neural
tumors including prostate, breast, lung, and pancreatic
cancers.
Length = 280
Score = 56.5 bits (136), Expect = 1e-08
Identities = 53/245 (21%), Positives = 104/245 (42%), Gaps = 41/245 (16%)
Query: 11 NVSASDFDIKRFIQQGNFGDIYLVE----EKQSHNTFVMKKVLREKMPNTI-----ERDI 61
++ D +K + +G FG ++L E + V K L+E + E ++
Sbjct: 1 HIKRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAEL 60
Query: 62 MVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLL-------------ENQPHGYLS 108
+ + +IV + + + + EY+ GD L E+ G L+
Sbjct: 61 LTVLQHQHIVRFYGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLT 120
Query: 109 ESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNG--RI 166
+ ++A + YL L +VHRD+ N L+ +K+ DFG + + R+
Sbjct: 121 LGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRV 180
Query: 167 --KSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----N 219
++++P+ ++ PE + + + +T D+WS GVV +E+ T G P+ N
Sbjct: 181 GGRTMLPI---RWMPPESILYRK-------FTTESDIWSFGVVLWEIFTYGKQPWYQLSN 230
Query: 220 YETLD 224
E ++
Sbjct: 231 TEAIE 235
>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase,
Cell Division Cycle 2-like 6. Serine/Threonine Kinases
(STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily,
catalytic (c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The CDC2L6 subfamily is
part of a larger superfamily that includes the catalytic
domains of other protein STKs, protein tyrosine kinases,
RIO kinases, aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase. CDKs belong to a
large family of STKs that are regulated by their cognate
cyclins. Together, they are involved in the control of
cell-cycle progression, transcription, and neuronal
function. CDC2L6 is also called CDK8-like and was
previously referred to as CDK11. However, this is a
confusing nomenclature as CDC2L6 is distinct from
CDC2L1, which is represented by the two protein products
from its gene, called CDK11(p110) and CDK11(p58), as
well as the caspase-processed CDK11(p46). CDK11(p110),
CDK11(p58), and CDK11(p46)do not belong to this
subfamily. CDC2L6 is an associated protein of Mediator,
a multiprotein complex that provides a platform to
connect transcriptional and chromatin regulators and
cofactors, in order to activate and mediate RNA
polymerase II transcription. CDC2L6 is localized mainly
in the nucleus amd exerts an opposing effect to CDK8 in
VP16-dependent transcriptional activation by being a
negative regulator.
Length = 317
Score = 57.0 bits (137), Expect = 1e-08
Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 45/241 (18%)
Query: 23 IQQGNFGDIYLVEEK--QSHNTFVMKKVLREKMPNTIERDIMV--KSKCPYIVNL---FY 75
+ +G +G +Y + K + + +K++ + + R+I + + K P ++ L F
Sbjct: 9 VGRGTYGHVYKAKRKDGKDEKEYALKQIEGTGISMSACREIALLRELKHPNVIALQKVFL 68
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLE-------NQPHGYLSESKARFYIYELAQAVQYLHG 128
S D V+ + +Y D +++ N+ L S + +Y++ + YLH
Sbjct: 69 SHSD-RKVWLLFDYAEH-DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHA 126
Query: 129 LGYVHRDIKPDNMLLSAT----GHLKLTDFGSATQVDKNGRIKSIVP----VGTPEYVAP 180
+HRD+KP N+L+ G +K+ D G A N +K + V T Y AP
Sbjct: 127 NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLF--NSPLKPLADLDPVVVTFWYRAP 184
Query: 181 EVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTG-------------STPFNYETLDMTY 227
E+L G+ YT + D+W+IG + ELLT S PF+++ LD +
Sbjct: 185 ELL------LGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIF 238
Query: 228 S 228
S
Sbjct: 239 S 239
>gnl|CDD|133200 cd05069, PTKc_Yes, Catalytic domain of the Protein Tyrosine Kinase,
Yes. Protein Tyrosine Kinase (PTK) family; Yes kinase;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Yes (or c-Yes) is a
member of the Src subfamily of proteins, which are
cytoplasmic (or non-receptor) tyr kinases. Src kinases
contain an N-terminal SH4 domain with a myristoylation
site, followed by SH3 and SH2 domains, a tyr kinase
domain, and a regulatory C-terminal region containing a
conserved tyr. They are activated by autophosphorylation
at the tyr kinase domain, but are negatively regulated
by phosphorylation at the C-terminal tyr by Csk
(C-terminal Src Kinase). Src proteins are involved in
signaling pathways that regulate cytokine and growth
factor responses, cytoskeleton dynamics, cell
proliferation, survival, and differentiation. c-Yes
kinase is the cellular homolog of the oncogenic protein
(v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma
viruses. It displays functional overlap with other Src
subfamily members, particularly Src. It also shows some
unique functions such as binding to occludins,
transmembrane proteins that regulate extracellular
interactions in tight junctions. Yes also associates
with a number of proteins in different cell types that
Src does not interact with, like JAK2 and gp130 in
pre-adipocytes, and Pyk2 in treated pulmonary vein
endothelial cells. Although the biological function of
Yes remains unclear, it appears to have a role in
regulating cell-cell interactions and vesicle
trafficking in polarized cells.
Length = 260
Score = 56.2 bits (135), Expect = 2e-08
Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 25/212 (11%)
Query: 25 QGNFGDIYLVEEKQSHNTFVMKKVLR--EKMPNTI--ERDIMVKSKCPYIVNLFYSFQDM 80
QG FG++++ + T V K L+ MP E IM K + +V L Y+
Sbjct: 16 QGCFGEVWM--GTWNGTTKVAIKTLKPGTMMPEAFLQEAQIMKKLRHDKLVPL-YAVVSE 72
Query: 81 NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
+Y + E++ G + L+ YL + ++A + Y+ + Y+HRD++ N
Sbjct: 73 EPIYIVTEFMGKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAAN 132
Query: 141 MLLSATGHLKLTDFGSATQVDKN---GRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTG 197
+L+ K+ DFG A ++ N R + P+ ++ APE + +T
Sbjct: 133 ILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPI---KWTAPEAALYGR-------FTI 182
Query: 198 SCDLWSIGVVSYELLT-GSTPF----NYETLD 224
D+WS G++ EL+T G P+ N E L+
Sbjct: 183 KSDVWSFGILLTELVTKGRVPYPGMVNREVLE 214
>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine
Kinase, Insulin Receptor. Protein Tyrosine Kinase (PTK)
family; Insulin Receptor (InsR); catalytic (c) domain.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. InsR is a
receptor tyr kinase (RTK) that is composed of two
alphabeta heterodimers. Binding of the insulin ligand to
the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, stimulating downstream kinase
activities, which initiate signaling cascades and
biological function. InsR signaling plays an important
role in many cellular processes including glucose
homeostasis, glycogen synthesis, lipid and protein
metabolism, ion and amino acid transport, cell cycle and
proliferation, cell differentiation, gene transcription,
and nitric oxide synthesis. Insulin resistance, caused
by abnormalities in InsR signaling, has been described
in diabetes, hypertension, cardiovascular disease,
metabolic syndrome, heart failure, and female
infertility.
Length = 288
Score = 56.5 bits (136), Expect = 2e-08
Identities = 59/227 (25%), Positives = 96/227 (42%), Gaps = 38/227 (16%)
Query: 12 VSASDFDIKRFIQQGNFGDIYL----------VEEKQSHNTFVMKKVLREKMPNTIERDI 61
VS + R + QG+FG +Y E + + T LRE++ E +
Sbjct: 3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASV 62
Query: 62 MVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLL-------ENQPHGYLSESKARF 114
M C ++V L +ME + GD + L EN P +
Sbjct: 63 MKGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMI 122
Query: 115 YIY-ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV------DKNGRIK 167
+ E+A + YL+ +VHRD+ N +++ +K+ DFG + K G K
Sbjct: 123 QMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGG--K 180
Query: 168 SIVPVGTPEYVAPEVLEWMEGNHGSDG-YTGSCDLWSIGVVSYELLT 213
++PV ++APE L+ DG +T S D+WS GVV +E+ +
Sbjct: 181 GLLPV---RWMAPESLK--------DGVFTTSSDMWSFGVVLWEITS 216
>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Insulin-like Growth Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Insulin-like Growth
Factor-1 Receptor (IGF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. IGF-1R is
a receptor tyr kinases (RTK) that is composed of two
alphabeta heterodimers. Binding of the ligand (IGF-1 or
IGF-2) to the extracellular alpha subunit activates the
intracellular tyr kinase domain of the transmembrane
beta subunit. Receptor activation leads to
autophosphorylation, which stimulates downstream kinase
activities and biological function. IGF-1R signaling is
important in the differentiation, growth, and survival
of normal cells. In cancer cells, where it is frequently
overexpressed, IGF-1R is implicated in proliferation,
the suppression of apoptosis, invasion, and metastasis.
IGF-1R is being developed as a therapeutic target in
cancer treatment.
Length = 277
Score = 56.2 bits (135), Expect = 2e-08
Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 34/216 (15%)
Query: 21 RFIQQGNFGDIYL-----VEEKQSHNTFVMKKV-----LREKMPNTIERDIMVKSKCPYI 70
R + QG+FG +Y V + + +K V +RE++ E +M + C ++
Sbjct: 12 RELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHV 71
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLL-------ENQPHGYLSESKARFYIY-ELAQA 122
V L IME +T GD + L EN P K + E+A
Sbjct: 72 VRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADG 131
Query: 123 VQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRI----KSIVPVGTPEYV 178
+ YL+ +VHRD+ N +++ +K+ DFG + + K ++PV ++
Sbjct: 132 MAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV---RWM 188
Query: 179 APEVLEWMEGNHGSDG-YTGSCDLWSIGVVSYELLT 213
+PE L+ DG +T D+WS GVV +E+ T
Sbjct: 189 SPESLK--------DGVFTTYSDVWSFGVVLWEIAT 216
>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 2. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 2 (FGFR2); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR2 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. There are many splice
variants of FGFR2 which show differential expression and
binding to FGF ligands. Disruption of either FGFR2 or
FGFR2b is lethal in mice, due to defects in the placenta
or severe impairment of tissue development including
lung, limb, and thyroid, respectively. Disruption of
FGFR2c in mice results in defective bone and skull
development. Genetic alterations of FGFR2 are associated
with many human skeletal disorders including Apert
syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and
Pfeiffer syndrome.
Length = 304
Score = 55.4 bits (133), Expect = 4e-08
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 56/233 (24%)
Query: 25 QGNFGDIYLVE------EKQSHNTFVMKKVLREKMPNTIERDI--------MVK--SKCP 68
+G FG + + E +K V K+L++ + E+D+ M+K K
Sbjct: 25 EGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKD---DATEKDLSDLVSEMEMMKMIGKHK 81
Query: 69 YIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLE-NQPHGY--------LSESKARFY---- 115
I+NL + +Y I+EY + G+ L +P G + + + F
Sbjct: 82 NIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVS 141
Query: 116 -IYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDK--------NGRI 166
Y++A+ ++YL +HRD+ N+L++ +K+ DFG A V+ NGR+
Sbjct: 142 CTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRL 201
Query: 167 KSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
PV +++APE L YT D+WS GV+ +E+ T G +P+
Sbjct: 202 ----PV---KWMAPEAL-------FDRVYTHQSDVWSFGVLMWEIFTLGGSPY 240
>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth
Factor Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR) subfamily; catalytic (c) domain. EGFR
(HER, ErbB) subfamily members include EGFR (HER1,
ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
The EGFR proteins are receptor tyr kinases (RTKs)
containing an extracellular EGF-related ligand-binding
region, a transmembrane helix, and a cytoplasmic region
with a tyr kinase domain and a regulatory C-terminal
tail. Unlike other tyr kinases, phosphorylation of the
activation loop of EGFR proteins is not critical to
their activation. Instead, they are activated by
ligand-induced dimerization, resulting in the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Collectively, they can recognize a variety of
ligands including EGF, TGFalpha, and neuregulins, among
others. All four subfamily members can form homo- or
heterodimers. HER3 contains an impaired kinase domain
and depends on its heterodimerization partner for
activation. EGFR subfamily members are involved in
signaling pathways leading to a broad range of cellular
responses including cell proliferation, differentiation,
migration, growth inhibition, and apoptosis. Gain of
function alterations, through their overexpression,
deletions, or point mutations in their kinase domains,
have been implicated in various cancers. These receptors
are targets of many small molecule inhibitors and
monoclonal antibodies used in cancer therapy.
Length = 279
Score = 55.1 bits (133), Expect = 4e-08
Identities = 59/215 (27%), Positives = 88/215 (40%), Gaps = 42/215 (19%)
Query: 26 GNFGDIY---LVEEKQSHNTFVMKKVLREKMP----NTIERD--IMVKSKCPYIVNLFYS 76
G FG +Y + E + V KVLRE+ I + +M P++V L
Sbjct: 18 GAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRL-LG 76
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYEL-------AQAVQYLHGL 129
+ V I + + G LL+ Y+ K L A+ + YL
Sbjct: 77 ICLSSQVQLITQLMPLG---CLLD-----YVRNHKDNIGSQYLLNWCVQIAKGMSYLEEK 128
Query: 130 GYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPE---VLEWM 186
VHRD+ N+L+ H+K+TDFG A ++ V EY A ++WM
Sbjct: 129 RLVHRDLAARNVLVKTPQHVKITDFGLA----------KLLDVDEKEYHAEGGKVPIKWM 178
Query: 187 --EGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
E YT D+WS GV +EL+T G+ P+
Sbjct: 179 ALESILHRI-YTHKSDVWSYGVTVWELMTFGAKPY 212
>gnl|CDD|133220 cd05089, PTKc_Tie1, Catalytic domain of the Protein Tyrosine
Kinase, Tie1. Protein Tyrosine Kinase (PTK) family;
Tie1; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie1 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. No specific ligand has been
identified for Tie1, although the angiopoietin, Ang-1,
binds to Tie1 through integrins at high concentrations.
In vivo studies of Tie1 show that it is critical in
vascular development.
Length = 297
Score = 55.0 bits (132), Expect = 5e-08
Identities = 62/231 (26%), Positives = 102/231 (44%), Gaps = 42/231 (18%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTF-VMKKVLREKMPNTIERD------IMVK-SKC 67
D + I +GNFG + K+ K+L+E RD ++ K
Sbjct: 3 DIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHH 62
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGG---DFVT---LLENQP-----HGYLSESKAR--- 113
P I+NL + ++ ++Y +EY G DF+ +LE P HG S ++
Sbjct: 63 PNIINLLGACENRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLL 122
Query: 114 FYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDF----GSATQVDKN-GRIKS 168
+ ++A +QYL ++HRD+ N+L+ K+ DF G V K GR+
Sbjct: 123 QFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRL-- 180
Query: 169 IVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
PV ++A E L + YT D+WS GV+ +E+++ G TP+
Sbjct: 181 --PV---RWMAIESLNY-------SVYTTKSDVWSFGVLLWEIVSLGGTPY 219
>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Tyrosine kinase 2. Protein Tyrosine
Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyk2 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase catalytic domain. Jaks are crucial for
cytokine receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Tyk2 is widely expressed in many tissues. It is involved
in signaling via the cytokine receptors IFN-alphabeta,
IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell
surface urokinase receptor (uPAR) signaling and plays a
role in modulating vascular smooth muscle cell (VSMC)
functional behavior in response to injury. Tyk2 is also
important in dendritic cell function and T helper (Th)1
cell differentiation. A homozygous mutation of Tyk2 was
found in a patient with hyper-IgE syndrome (HIES), a
primary immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 283
Score = 54.5 bits (131), Expect = 6e-08
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 12/133 (9%)
Query: 83 VYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNML 142
+ IMEYV G +L + P L+ ++ + ++ + + YLH Y+HRD+ N+L
Sbjct: 83 LQLIMEYVPLG---SLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVL 139
Query: 143 LSATGHLKLTDFGSATQVDKNGRIKSIVPVG-TPEY-VAPEVLEWMEGNHGSDGYTGSCD 200
L +K+ DFG A V + + G +P + A E L+ + ++ S D
Sbjct: 140 LDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKFSYAS-------D 192
Query: 201 LWSIGVVSYELLT 213
+WS GV YELLT
Sbjct: 193 VWSFGVTLYELLT 205
>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A2. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA2
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion, making it important in neural development and
plasticity, cell morphogenesis, cell-fate determination,
embryonic development, tissue patterning, and
angiogenesis. The EphA2 receptor is overexpressed in
tumor cells and tumor blood vessels in a variety of
cancers including breast, prostate, lung, and colon. As
a result, it is an attractive target for drug design
since its inhibition could affect several aspects of
tumor progression.
Length = 268
Score = 54.6 bits (131), Expect = 6e-08
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 47/224 (20%)
Query: 20 KRFIQQGNFGDIY--LVEEKQSHNTFVMKKVLR----EKMPNTI--ERDIMVKSKCPYIV 71
++ I G FG+++ +++ V K L+ EK E IM + I+
Sbjct: 10 QKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNII 69
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYEL-------AQAVQ 124
L I EY+ G YL + F Y+L A ++
Sbjct: 70 RLEGVVTKFKPAMIITEYMENGAL--------DKYLRDHDGEFSSYQLVGMLRGIAAGMK 121
Query: 125 YLHGLGYVHRDIKPDNMLLSATGHLKLTDFG---------SATQVDKNGRIKSIVPVGTP 175
YL + YVHRD+ N+L+++ K++DFG T G+I P+
Sbjct: 122 YLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKI----PI--- 174
Query: 176 EYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
+ APE + + + +T + D+WS G+V +E+++ G P+
Sbjct: 175 RWTAPEAIAYRK-------FTSASDVWSFGIVMWEVMSFGERPY 211
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 55.9 bits (135), Expect = 7e-08
Identities = 68/291 (23%), Positives = 123/291 (42%), Gaps = 38/291 (13%)
Query: 343 DSTLPPSS----EDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDL 398
D T+PP S +D+ HW D Q L+ + + +E L ++L+L+ ++ L +L
Sbjct: 214 DGTVPPKSRLNPQDVEHWIADI-QALRAIQKVAPEIEKLQEDFEQLLSLELRLQHLHGEL 272
Query: 399 TSHTSLLSKKEEEID----RLRQEMVKKESDLV----ATSSDLVATRHELEEVRSEL--- 447
+ L++++EE RLRQ++ E L + +L A +L RSEL
Sbjct: 273 VADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDELNQELSAANAKLAADRSELELL 332
Query: 448 -KEKENLEKTDDRKL------------EVCEVSKELEVLRG-------ELEEQKTATKQW 487
+K E D +L E+ EV L+ L G + E K K+
Sbjct: 333 EDQKGAFEDADIEQLQADLDQLPSIRSELEEVEARLDALTGKHQDVQRKYERLKQKIKEQ 392
Query: 488 KKDWYQSVKERNAAVAELK--QAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLR 545
+ + ER AA+ E K Q E L+ + L Q+L+ + + L+ +L
Sbjct: 393 LERDLEKNNERLAAIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLG 452
Query: 546 EHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLE 596
+ ++ + +E+EQ + + E+ E+ + +L+S +L
Sbjct: 453 RLKQRLDSATATPEELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQLR 503
Score = 42.4 bits (100), Expect = 0.001
Identities = 59/317 (18%), Positives = 116/317 (36%), Gaps = 28/317 (8%)
Query: 478 EEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQ 537
E + +Q ++ +V ++ A +L QA E E K LK + L Q
Sbjct: 603 TELRERLQQAEEALQSAVAKQKQAEEQLVQANAELEEQKRAEAEARTALKQARLDLQRLQ 662
Query: 538 NSLDSKLREHQALSNTIESMQKEMEQSAVR-VREMSGISEKYEKDRKTLLE-LKSAKERL 595
N E Q+L + +E E +Q A +R++ ++ + ++ LE LK L
Sbjct: 663 N-------EQQSLKDKLELAIAERKQQAETQLRQLDAQLKQLLEQQQAFLEALKDDFREL 715
Query: 596 ELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGK----I 651
E +E IE + +A+ L ++++ +
Sbjct: 716 RTERLAKWQVVEGELDNQLAQLSAAIE----AARTQAKARLKELKKQYDRELASLDVDPN 771
Query: 652 RLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLE 711
+ L + + ++ +E+ VRE ++ ++ L +SL PN L
Sbjct: 772 TVK-ELKRQIEELETTIERIAVRRPEVREYRAFMQETW---LHRDSLREERPN-LAIQLR 826
Query: 712 DLKSNYTERESKLRSANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSH 771
+L+S+ E + +L +I + + + LE E K++ + E L+ D +
Sbjct: 827 ELESSAEELQQELT---RLIKDTKLRRKKLEQERKALE---KQLDQLDELLRGLRDEMRQ 880
Query: 772 DNEQLRKKNNDILSHDN 788
E N +
Sbjct: 881 LAELKEPANANQAEGSI 897
>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine
Kinase, Cyclin-Dependent protein Kinase 8.
Serine/Threonine Kinases (STKs), Cyclin-Dependent
protein Kinase 8 (CDK8) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The CDK8 subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. CDKs belong to a large family
of STKs that are regulated by their cognate cyclins.
Together, they are involved in the control of cell-cycle
progression, transcription, and neuronal function. CDK8
can act as a negative or positive regulator of
transcription, depending on the scenario. Together with
its regulator, cyclin C, it reversibly associates with
the multi-subunit core Mediator complex, a cofactor that
is involved in regulating RNA polymerase II (RNAP
II)-dependent transcription. CDK8 phosphorylates cyclin
H, a subunit of the general transcription factor TFIIH,
which results in the inhibition of TFIIH-dependent
phosphorylation of the C-terminal domain (CTD) of RNAP
II, facilitating the inhibition of transcription. It has
also been shown to promote transcription by a mechanism
that is likely to involve RNAP II phosphorylation. CDK8
also functions as a stimulus-specific positive
coregulator of p53 transcriptional responses.
Length = 317
Score = 54.7 bits (131), Expect = 8e-08
Identities = 66/270 (24%), Positives = 118/270 (43%), Gaps = 51/270 (18%)
Query: 23 IQQGNFGDIYLVEEKQSHNT--FVMKKVLREKMPNTIERDIMV--KSKCPYIVNL---FY 75
+ +G +G +Y + K + + +K++ + + R+I + + K P +++L F
Sbjct: 9 VGRGTYGHVYKAKRKDGKDDRDYALKQIEGTGISMSACREIALLRELKHPNVISLQKVFL 68
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLE-------NQPHGYLSESKARFYIYELAQAVQYLHG 128
S D V+ + +Y D +++ N+ L + +Y++ + YLH
Sbjct: 69 SHAD-RKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHA 126
Query: 129 LGYVHRDIKPDNMLLSAT----GHLKLTDFGSATQVDKNGRIKSIVP----VGTPEYVAP 180
+HRD+KP N+L+ G +K+ D G A N +K + V T Y AP
Sbjct: 127 NWVLHRDLKPANILVMGEGPERGRVKIADMGFARLF--NSPLKPLADLDPVVVTFWYRAP 184
Query: 181 EVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTG-------------STPFNYETLDMTY 227
E+L G+ YT + D+W+IG + ELLT S P++++ LD +
Sbjct: 185 ELL------LGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIF 238
Query: 228 SSI---LACDTEDTVSFPSSIRLSTAMVNF 254
+ + D ED P ST M +F
Sbjct: 239 NVMGFPADKDWEDIKKMPEH---STLMKDF 265
>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine
Kinases, Receptor tyrosine kinase-like Orphan Receptors.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor (Ror) subfamily; catalytic
(c) domain. The Ror subfamily consists of Ror1, Ror2,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Ror proteins are orphan
receptor tyr kinases (RTKs) containing an extracellular
region with immunoglobulin-like, cysteine-rich, and
kringle domains, a transmembrane segment, and an
intracellular catalytic domain. Ror RTKs are unrelated
to the nuclear receptor subfamily called
retinoid-related orphan receptors (RORs). RTKs are
usually activated through ligand binding, which causes
dimerization and autophosphorylation of the
intracellular tyr kinase catalytic domain. Ror kinases
are expressed in many tissues during development. They
play important roles in bone and heart formation.
Mutations in human Ror2 result in two different bone
development genetic disorders, recessive Robinow
syndrome and brachydactyly type B. Drosophila Ror is
expressed only in the developing nervous system during
neurite outgrowth and neuronal differentiation,
suggesting a role for Drosophila Ror in neural
development. More recently, mouse Ror1 and Ror2 have
also been found to play an important role in regulating
neurite growth in central neurons. Ror1 and Ror2 are
believed to have some overlapping and redundant
functions.
Length = 283
Score = 54.0 bits (130), Expect = 9e-08
Identities = 64/247 (25%), Positives = 105/247 (42%), Gaps = 46/247 (18%)
Query: 21 RFIQ---QGNFGDIYLVE----EKQSHNTFVMKKVLRE----KMPNTIERDIMVKSKC-- 67
RF++ +G FG +Y E ++ T V K L+E K+ ++ + S
Sbjct: 8 RFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQH 67
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVT-LLENQPHG-------------YLSESKAR 113
P IV L + EY+ GD L+ N PH L S
Sbjct: 68 PNIVCLLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFL 127
Query: 114 FYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNG--RI--KSI 169
++A ++YL +VHRD+ N L+ +K++DFG + + R+ KS+
Sbjct: 128 HIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSL 187
Query: 170 VPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----NYETLD 224
+PV ++ PE + + G +T D+WS GVV +E+ + G P+ N E ++
Sbjct: 188 LPV---RWMPPEAI--LYGK-----FTTESDIWSFGVVLWEIFSYGLQPYYGFSNQEVIE 237
Query: 225 MTYSSIL 231
M S L
Sbjct: 238 MIRSRQL 244
>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional.
Length = 357
Score = 54.1 bits (130), Expect = 1e-07
Identities = 34/124 (27%), Positives = 56/124 (45%), Gaps = 20/124 (16%)
Query: 94 DFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTD 153
D T L + L +A ++ + ++YLH +HRD+K +N+ ++ + + D
Sbjct: 142 DLYTYLTKR-SRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGD 200
Query: 154 FGSATQVDKNGRIKSIVP-----VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVS 208
G+A + + P GT E APEVL D Y D+WS G+V
Sbjct: 201 LGAA-------QFPVVAPAFLGLAGTVETNAPEVL-------ARDKYNSKADIWSAGIVL 246
Query: 209 YELL 212
+E+L
Sbjct: 247 FEML 250
>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase,
REarranged during Transfection protein. Protein
Tyrosine Kinase (PTK) family; RET (REarranged during
Transfection) protein; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. RET is a
receptor tyr kinase (RTK) containing an extracellular
region with four cadherin-like repeats, a
calcium-binding site, and a cysteine-rich domain, a
transmembrane segment, and an intracellular catalytic
domain. It is part of a multisubunit complex that binds
glial-derived neurotropic factor (GDNF) family ligands
(GFLs) including GDNF, neurturin, artemin, and
persephin. GFLs bind RET along with four GPI-anchored
coreceptors, bringing two RET molecules together,
leading to autophosphorylation, activation, and
intracellular signaling. RET is essential for the
development of the sympathetic, parasympathetic and
enteric nervous systems, and the kidney. RET disruption
by germline mutations causes diseases in humans
including congenital aganglionosis of the
gastrointestinal tract (Hirschsprung's disease) and
three related inherited cancers: multiple endocrine
neoplasia type 2A (MEN2A), MEN2B, and familial medullary
thyroid carcinoma (FMTC).
Length = 290
Score = 53.4 bits (128), Expect = 1e-07
Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 15/109 (13%)
Query: 115 YIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNG----RIKSIV 170
+ +++++ +QYL + VHRD+ N+L++ +K++DFG + V + R K +
Sbjct: 132 FAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSKGRI 191
Query: 171 PVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
PV +++A E L +H YT D+WS GV+ +E++T G P+
Sbjct: 192 PV---KWMAIESL----FDH---IYTTQSDVWSFGVLLWEIVTLGGNPY 230
>gnl|CDD|88330 cd05047, PTKc_Tie, Catalytic domain of Tie Protein Tyrosine
Kinases. Protein Tyrosine Kinase (PTK) family; Tie
subfamily; catalytic (c) domain. The Tie subfamily
consists of Tie1 and Tie2. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie proteins are
receptor tyr kinases (RTKs) containing an extracellular
region, a transmembrane segment, and an intracellular
catalytic domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie receptors are
specifically expressed in endothelial cells and
hematopoietic stem cells. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2, while no specific
ligand has been identified for Tie1. The binding of
Ang-1 to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. In vivo studies of Tie1 show that it is
critical in vascular development.
Length = 270
Score = 53.5 bits (128), Expect = 1e-07
Identities = 55/225 (24%), Positives = 97/225 (43%), Gaps = 42/225 (18%)
Query: 22 FIQQGNFGD-IYLVEEKQSHNTFVMKKVLREKMPNTIERDIM--VKSKC-----PYIVNL 73
I +GNFG + +K K ++E RD ++ C P I+NL
Sbjct: 2 VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINL 61
Query: 74 FYSFQDMNHVYFIMEYVTGGDFVT------LLENQP-----HGYLSESKAR---FYIYEL 119
+ + ++Y +EY G+ + +LE P + S ++ + ++
Sbjct: 62 LGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADV 121
Query: 120 AQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDF----GSATQVDKN-GRIKSIVPVGT 174
A+ + YL ++HRD+ N+L+ K+ DF G V K GR+ PV
Sbjct: 122 ARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRL----PV-- 175
Query: 175 PEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
++A E L + YT + D+WS GV+ +E+++ G TP+
Sbjct: 176 -RWMAIESLNY-------SVYTTNSDVWSYGVLLWEIVSLGGTPY 212
>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase,
Abelson kinase. Protein Tyrosine Kinase (PTK) family;
Abelson (Abl) kinase; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Abl (or
c-Abl) is a ubiquitously-expressed cytoplasmic (or
nonreceptor) tyr kinase that contains SH3, SH2, and tyr
kinase domains in its N-terminal region, as well as
nuclear localization motifs, a putative DNA-binding
domain, and F- and G-actin binding domains in its
C-terminal tail. It also contains a short autoinhibitory
cap region in its N-terminus. Abl is normally inactive
and requires phosphorylation and myristoylation for
activation. Abl function depends on its subcellular
localization. In the cytoplasm, Abl plays a role in cell
proliferation and survival. In response to DNA damage or
oxidative stress, Abl is transported to the nucleus
where it induces apoptosis. In chronic myelogenous
leukemia (CML) patients, an aberrant translocation
results in the replacement of the first exon of Abl with
the BCR (breakpoint cluster region) gene. The resulting
BCR-Abl fusion protein is constitutively active and
associates into tetramers, resulting in a hyperactive
kinase sending a continuous signal. This leads to
uncontrolled proliferation, morphological transformation
and anti-apoptotic effects. BCR-Abl is the target of
selective inhibitors, such as imatinib (Gleevec), used
in the treatment of CML. Abl2, also known as ARG
(Abelson-related gene), is thought to play a cooperative
role with Abl in the proper development of the nervous
system. The Tel-ARG fusion protein, resulting from
reciprocal translocation between chromosomes 1 and 12,
is associated with acute myeloid leukemia (AML). The TEL
gene is a frequent fusion partner of other tyr kinase
oncogenes, including Tel/Abl, Tel/PDGFRbeta, and
Tel/Jak2, found in patients with leukemia and
myeloproliferative disorders.
Length = 263
Score = 53.3 bits (128), Expect = 1e-07
Identities = 48/219 (21%), Positives = 99/219 (45%), Gaps = 19/219 (8%)
Query: 15 SDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNT---IERDIMVKSKCPYIV 71
+D +K + G +G++Y K+ T +K + + M E +M + K P +V
Sbjct: 6 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLV 65
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGY 131
L Y I E++T G+ + L ++ + +++ A++YL +
Sbjct: 66 QLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNF 125
Query: 132 VHRDIKPDNMLLSATGHLKLTDFGSATQVDKN---GRIKSIVPVGTPEYVAPEVLEWMEG 188
+HRD+ N L+ +K+ DFG + + + + P+ ++ APE L +
Sbjct: 126 IHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI---KWTAPESLAY--- 179
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLT-GSTPFNYETLDMT 226
+ ++ D+W+ GV+ +E+ T G +P Y +D++
Sbjct: 180 ----NKFSIKSDVWAFGVLLWEIATYGMSP--YPGIDLS 212
>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 2. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
2 (DDR2) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR2 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR2 binds mostly to fibrillar collagens. More recently,
it has been reported to also bind collagen X. DDR2 is
widely expressed in many tissues with the highest levels
found in skeletal muscle, skin, kidney and lung. It is
important in cell proliferation and development. Mice,
with a deletion of DDR2, suffer from dwarfism and
delayed healing of epidermal wounds. DDR2 also
contributes to collagen (type I) regulation by
inhibiting fibrillogenesis and altering the morphology
of collagen fibers. It is also expressed in immature
dendritic cells (DCs), where it plays a role in DC
activation and function.
Length = 296
Score = 53.8 bits (129), Expect = 1e-07
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 46/229 (20%)
Query: 20 KRFIQQGNFGDIYLVEEKQSHN---------------TFVMKKVLREKMPNTIERD---- 60
K + +G FG+++L E + V K+LRE D
Sbjct: 10 KEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKE 69
Query: 61 --IMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLL-ENQPHGYLSESKARFYIY 117
IM + K P I+ L + + I EY+ GD L ++P ++ Y
Sbjct: 70 IKIMSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISY 129
Query: 118 --------ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNG--RI- 166
++A ++YL L +VHRD+ N L+ +K+ DFG + + RI
Sbjct: 130 STLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQ 189
Query: 167 -KSIVPVGTPEYVAPEVLEWMEGNHGSDG-YTGSCDLWSIGVVSYELLT 213
++++P+ WM G +T + D+W+ GV +E+LT
Sbjct: 190 GRAVLPI-----------RWMSWESILLGKFTTASDVWAFGVTLWEILT 227
>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase,
C-terminal Src kinase. Protein Tyrosine Kinase (PTK)
family; C-terminal Src kinase (Csk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. The Csk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing the Src homology domains, SH3 and
SH2, N-terminal to the catalytic tyr kinase domain. They
negatively regulate the activity of Src kinases that are
anchored to the plasma membrane. To inhibit Src kinases,
Csk is translocated to the membrane via binding to
specific transmembrane proteins, G-proteins, or adaptor
proteins near the membrane. Csk catalyzes the tyr
phosphorylation of the regulatory C-terminal tail of Src
kinases, resulting in their inactivation. Csk is
expressed in a wide variety of tissues. As a negative
regulator of Src, Csk plays a role in cell
proliferation, survival, and differentiation, and
consequently, in cancer development and progression. In
addition, Csk also shows Src-independent functions. It
is a critical component in G-protein signaling, and
plays a role in cytoskeletal reorganization and cell
migration.
Length = 256
Score = 53.1 bits (127), Expect = 2e-07
Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 13/205 (6%)
Query: 16 DFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDIMVKSKCPYIVNLF- 74
+ + + I +G FGD+ L + + + K E +M + + +V L
Sbjct: 7 ELKLLQTIGKGEFGDVMLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLG 66
Query: 75 YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
++ +Y + EY+ G V L ++ L + ++ +A++YL +VHR
Sbjct: 67 VIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHR 126
Query: 135 DIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDG 194
D+ N+L+S K++DFG + + +PV ++ APE L
Sbjct: 127 DLAARNVLVSEDNVAKVSDFGLTKEASST-QDTGKLPV---KWTAPEALR-------EKK 175
Query: 195 YTGSCDLWSIGVVSYELLT-GSTPF 218
++ D+WS G++ +E+ + G P+
Sbjct: 176 FSTKSDVWSFGILLWEIYSFGRVPY 200
>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 4. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 4 (FGFR4); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR4 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Unlike other FGFRs,
there is only one splice form of FGFR4. It binds FGF1,
FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective
ligand for FGFR4. Although disruption of FGFR4 in mice
causes no obvious phenotype, in vivo inhibition of FGFR4
in cultured skeletal muscle cells resulted in an arrest
of muscle progenitor differentiation. FGF6 and FGFR4 are
uniquely expressed in myofibers and satellite cells.
FGF6/FGFR4 signaling appears to play a key role in the
regulation of muscle regeneration. A polymorphism in
FGFR4 is found in head and neck squamous cell carcinoma.
Length = 314
Score = 53.4 bits (128), Expect = 2e-07
Identities = 55/230 (23%), Positives = 93/230 (40%), Gaps = 50/230 (21%)
Query: 25 QGNFGDIYLVE------EKQSHNTFVMKKVLREKMPNTIERDIM-------VKSKCPYIV 71
+G FG + E + V K+L++ + D++ + K I+
Sbjct: 22 EGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNII 81
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQ--------------PHGYLSESKARFYIY 117
NL +Y I+EY G+ L + P LS Y
Sbjct: 82 NLLGVCTQEGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAY 141
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDK--------NGRIKSI 169
++A+ ++YL +HRD+ N+L++ +K+ DFG A V NGR+
Sbjct: 142 QVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRL--- 198
Query: 170 VPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
PV +++APE L YT D+WS G++ +E+ T G +P+
Sbjct: 199 -PV---KWMAPEAL-------FDRVYTHQSDVWSFGILMWEIFTLGGSPY 237
>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 1. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 1 (FGFR1); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR1 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Alternative splicing of
FGFR1 transcripts produces a variety of isoforms, which
are differentially expressed in cells. FGFR1 binds the
ligands, FGF1 and FGF2, with high affinity and has also
been reported to bind FGF4, FGF6, and FGF9. FGFR1
signaling is critical in the control of cell migration
during embryo development. It promotes cell
proliferation in fibroblasts. Nuclear FGFR1 plays a role
in the regulation of transcription. Mutations,
insertions or deletions of FGFR1 have been identified in
patients with Kallman's syndrome (KS), an inherited
disorder characterized by hypogonadotropic hypogonadism
and loss of olfaction. Aberrant FGFR1 expression has
been found in some human cancers including 8P11
myeloproliferative syndrome (EMS), breast cancer, and
pancreatic adenocarcinoma.
Length = 307
Score = 53.1 bits (127), Expect = 2e-07
Identities = 60/230 (26%), Positives = 100/230 (43%), Gaps = 50/230 (21%)
Query: 25 QGNFGDIYLVE------EKQSHNTFVMKKVLR-----EKMPNTIERDIMVK--SKCPYIV 71
+G FG + + E EK + T V K+L+ + + + I M+K K I+
Sbjct: 28 EGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNII 87
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQ--------------PHGYLSESKARFYIY 117
NL + +Y I+EY + G+ L + P LS Y
Sbjct: 88 NLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAY 147
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV--------DKNGRIKSI 169
++A+ ++YL +HRD+ N+L++ +K+ DFG A + NGR+
Sbjct: 148 QVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRL--- 204
Query: 170 VPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
PV +++APE L YT D+WS GV+ +E+ T G +P+
Sbjct: 205 -PV---KWMAPEAL-------FDRIYTHQSDVWSFGVLLWEIFTLGGSPY 243
>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine
Kinases, Class EphB Ephrin Receptors. Protein Tyrosine
Kinase (PTK) family; Ephrin Receptor (EphR) subfamily;
class EphB receptors; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). Class EphB receptors bind to transmembrane
ephrin-B ligands. There are six vertebrate EhpB
receptors (EphB1-6), which display promiscuous
interactions with three ephrin-B ligands. One exception
is EphB2, which also interacts with ephrin A5. EphRs
contain an ephrin-binding domain and two fibronectin
repeats extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). Ephrin/EphR
interaction mainly results in cell-cell repulsion or
adhesion. EphBRs play important roles in synapse
formation and plasticity, spine morphogenesis, axon
guidance, and angiogenesis. In the intestinal
epithelium, EphBRs are Wnt signaling target genes that
control cell compartmentalization. They function as
suppressors of color cancer progression.
Length = 269
Score = 52.9 bits (127), Expect = 2e-07
Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 27/216 (12%)
Query: 19 IKRFIQQGNFGDIYLVEEKQ--SHNTFVMKKVLREKMPNTIERD------IMVKSKCPYI 70
I+ I G FG++ K FV K L+ RD IM + P I
Sbjct: 8 IEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNI 67
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
++L V I E++ G + L Q G + + + +A ++YL +
Sbjct: 68 IHLEGVVTKSRPVMIITEFMENGALDSFLR-QNDGQFTVIQLVGMLRGIAAGMKYLSEMN 126
Query: 131 YVHRDIKPDNMLLSATGHLKLTDFGSATQVDKN-------GRIKSIVPVGTPEYVAPEVL 183
YVHRD+ N+L+++ K++DFG + ++ + + +P+ + APE +
Sbjct: 127 YVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPI---RWTAPEAI 183
Query: 184 EWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
+ + +T + D+WS G+V +E+++ G P+
Sbjct: 184 AYRK-------FTSASDVWSYGIVMWEVMSYGERPY 212
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 54.3 bits (131), Expect = 2e-07
Identities = 67/284 (23%), Positives = 125/284 (44%), Gaps = 31/284 (10%)
Query: 403 SLLSKKEEEIDRLRQEMVKKES-DLVATSSDLVATRHELEEVRSELKEKE-NLEKTDDRK 460
+LS + +D+L+ ++ +KE DL + L EL E+ E++ E E+ + +
Sbjct: 180 RVLSDQRGSLDQLKAQIEEKEEKDLHERLNGL---ESELAELDEEIERYEEQREQARETR 236
Query: 461 LEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLT 520
E EV +E E R ELE + + ++ ++ +ER E++ + E L+E+
Sbjct: 237 DEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERD 296
Query: 521 SLEQELKV---SEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEK 577
L E + EA+ + L+ + E ++ +E+ V + + +E
Sbjct: 297 DLLAEAGLDDADAEAVEARREELEDR----------DEELRDRLEECRVAAQAHNEEAES 346
Query: 578 YEKDRKTL----LELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELR-----AKSK 628
+D L EL+ LE E+ + +E R E+E +++ ELR A
Sbjct: 347 LREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVD 406
Query: 629 LEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAE 672
L AE L +REE +L++ L + A+ ++E+AE
Sbjct: 407 LGNAEDFLEELREERDELRER----EAELEATLRTARERVEEAE 446
Score = 53.5 bits (129), Expect = 3e-07
Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 48/282 (17%)
Query: 349 SSEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKK 408
E++ ++ R Q + EA LE+ R + L+A++ L++ + ++
Sbjct: 218 LDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETE---RER 274
Query: 409 EEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLE--VCEV 466
EE + +R DL ELEE R +L + L+ D +E E+
Sbjct: 275 EELAEEVR---------------DLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL 319
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
E LR LEE + A + ++ E A + E L+E+ LE EL
Sbjct: 320 EDRDEELRDRLEECRVAAQAHNEE-----AESLREDA--DDLEERAEELREEAAELESEL 372
Query: 527 KVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLL 586
+ + EA+ + ++ L IE +++ + V + E
Sbjct: 373 EEAREAVEDRREEIE-------ELEEEIEELRERFGDAPVDLGNAEDFLE---------- 415
Query: 587 ELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSK 628
EL+ ++ L R + +LE+T R ++ L K
Sbjct: 416 ELREERDEL----REREAELEATLRTARERVEEAEALLEAGK 453
Score = 52.0 bits (125), Expect = 1e-06
Identities = 92/428 (21%), Positives = 154/428 (35%), Gaps = 80/428 (18%)
Query: 361 LQLLQQLAEAKASLED-LSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEM 419
++L + L D L R A + SL++D EE + LR+E
Sbjct: 313 EARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDL-------EERAEELREEA 365
Query: 420 VKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEE 479
+ ES+L + R E+EE+ E++E E+ D +++ LE LR E +E
Sbjct: 366 AELESELEEAREAVEDRREEIEELEEEIEELR--ERFGDAPVDLGNAEDFLEELREERDE 423
Query: 480 QKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKE--KLTSLEQELKVS-------- 529
+ + E A + ++ E EAL E K Q ++ S
Sbjct: 424 LR-----------EREAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEE 472
Query: 530 -EEALATAQNSLDSKLREHQALSNTIESMQ--KEMEQSAVRVREMSGISEKYEKDRKTLL 586
E + + L+ E + + +E + E E R+ E E+ +R+ +
Sbjct: 473 DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEERREDLEELIAERRETI 532
Query: 587 ELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKL 646
E K ER E E+R +LE+ E E A+ E+ EL + E K+
Sbjct: 533 EEKR--ERAE-ELRERAAELEAEAEEKR-EAAAEAEEEAEEAREEV-AELNSKLAELKER 587
Query: 647 KQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTF 706
+ R+ L + + AE E+ +RE+
Sbjct: 588 IESLERIRTLL--------AAIADAEDEIERLREK------------------------- 614
Query: 707 LSSLEDLKSNYTERESKLRSANEIIGEYETK-----ITALESTMTRSESYCKEMVEYLET 761
E L ER +L E E E + I R+E Y +++ E L+
Sbjct: 615 ---REALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDE 671
Query: 762 LQKNNDIL 769
L++ D L
Sbjct: 672 LREERDDL 679
Score = 49.3 bits (118), Expect = 7e-06
Identities = 53/262 (20%), Positives = 102/262 (38%), Gaps = 29/262 (11%)
Query: 367 LAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDL 426
+ E EDL + R+ L+ + L++ + + +K E + LR+ + E++
Sbjct: 494 VEERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEA 553
Query: 427 VATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQ 486
E EE R E+ E + ++E E + L + E++ ++
Sbjct: 554 EEKREAAAEAEEEAEEAREEVAELNSKLAELKERIESLERIRTLLAAIADAEDEIERLRE 613
Query: 487 WKKDWYQSVKERNAAVAELKQ--AQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKL 544
++ + ER +AE ++ + E E + ++ ++ + +EE L + LD
Sbjct: 614 KREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLDELR 673
Query: 545 REHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLE-LEVRGYK 603
E L I +++ E+E EL+ +ER E LE R
Sbjct: 674 EERDDLQAEIGAVENELE------------------------ELEELRERREALENR--V 707
Query: 604 LDLESTRRELETNKDQTIELRA 625
LE+ E E + +LRA
Sbjct: 708 EALEALYDEAEELESMYGDLRA 729
Score = 47.0 bits (112), Expect = 4e-05
Identities = 71/324 (21%), Positives = 129/324 (39%), Gaps = 56/324 (17%)
Query: 366 QLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESD 425
+ + + +E+L + L+ + DL + L + EE D LR+ + E+
Sbjct: 378 AVEDRREEIEEL---EEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEAT 434
Query: 426 L------VATSSDLVAT----------------------RHELEEVRSELKEKENLEKTD 457
L V + L+ R +EE+ +EL++ E +
Sbjct: 435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEV 494
Query: 458 DRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKE 517
+ +LE E E E LEE++ ++ + ++++E+ EL++ E EA E
Sbjct: 495 EERLERAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAE 554
Query: 518 KLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQK---------EMEQSAVRV 568
+ E + E L+SKL L IES+++ + E R+
Sbjct: 555 EKREAAAEAEEEAEEAREEVAELNSKL---AELKERIESLERIRTLLAAIADAEDEIERL 611
Query: 569 RE-MSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKS 627
RE ++E ++ R+ L E + K LE E +++ +E RA+
Sbjct: 612 REKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKE-----------RAEE 660
Query: 628 KLEKAEGELTTVREENKKLKQGKI 651
LE+ E +L +REE L Q +I
Sbjct: 661 YLEQVEEKLDELREERDDL-QAEI 683
Score = 40.4 bits (95), Expect = 0.004
Identities = 57/273 (20%), Positives = 107/273 (39%), Gaps = 37/273 (13%)
Query: 516 KEKLTSLEQELKVSEEA-LATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGI 574
+ L L+ +++ EE L N L+S+L E L IE +++ EQ+ E +
Sbjct: 186 RGSLDQLKAQIEEKEEKDLHERLNGLESELAE---LDEEIERYEEQREQARETRDEADEV 242
Query: 575 SEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIEL-------RAKS 627
E++E+ R+ L L++ E L + + + E E+ +++ EL A++
Sbjct: 243 LEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEA 302
Query: 628 KLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEG---ELTTVREENKK 684
L+ A+ E V ++L+ L L + AQ+ E+AE + + E ++
Sbjct: 303 GLDDADAE--AVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEE 360
Query: 685 LKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYETKITALEST 744
L+ +L+S E + E I E E +I L
Sbjct: 361 LR---------------------EEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399
Query: 745 MTRSESYCKEMVEYLETLQKNNDILSHDNEQLR 777
+ ++LE L++ D L +L
Sbjct: 400 FGDAPVDLGNAEDFLEELREERDELREREAELE 432
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 53.6 bits (129), Expect = 3e-07
Identities = 55/284 (19%), Positives = 103/284 (36%), Gaps = 32/284 (11%)
Query: 376 DLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVA 435
LS + VLA ++ + L ++ E++I + + K E L + +++ +
Sbjct: 21 LLSAA---VLAAAFSAAADDKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIAS 77
Query: 436 TRHELEEVRSELKEKE-NLEKTDDR--KLEVCEVSKELEVLRGELEEQKTATKQWKKDWY 492
+L E +LK+ + + R LEV E + R L EQ A ++ ++
Sbjct: 78 LEAQLIETADDLKKLRKQIADLNARLNALEVQEREQ-----RRRLAEQLAALQRSGRNPP 132
Query: 493 ----QSVKERNAAVAELKQAQTENEALKEKLTSLEQ---ELKVSEEALATAQNSLDSKLR 545
S ++ +V N A E++ +L+ +L +A Q L + L
Sbjct: 133 PALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLS 192
Query: 546 EH----QALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRG 601
E L+ +E +K + Q D+K L EL++ + RL+ E+
Sbjct: 193 EQRAQQAKLAQLLEERKKTLAQLNSE----------LSADQKKLEELRANESRLKNEIAS 242
Query: 602 YKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKK 645
+ R + RA E T E+
Sbjct: 243 AEAAAAKAREAAAAAEAAAARARAAEAKRTGETYKPTAPEKMLI 286
Score = 47.0 bits (112), Expect = 3e-05
Identities = 45/254 (17%), Positives = 98/254 (38%), Gaps = 8/254 (3%)
Query: 346 LPPSSEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLL 405
+ ++ + Q+ +++A + + + + + L+ Q+ SL+ ++ S + L
Sbjct: 26 VLAAAFSAAADDKQLKQIQKEIAALEKKIRE---QQDQRAKLEKQLKSLETEIASLEAQL 82
Query: 406 SKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEV-----RSELKEKENLEKTDDRK 460
+ +++ +LR+++ + L A R L E RS L + +
Sbjct: 83 IETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDA 142
Query: 461 LEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLT 520
++ L E+ A K K E A AEL +E A + KL
Sbjct: 143 QRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLA 202
Query: 521 SLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEK 580
L +E K + L + ++ KL E +A + +++ E +A + RE + +E
Sbjct: 203 QLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAA 262
Query: 581 DRKTLLELKSAKER 594
+ ++ +
Sbjct: 263 RARAAEAKRTGETY 276
>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 3.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR3 (or Flt4) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. VEGFR3
preferentially binds the ligands VEGFC and VEGFD. VEGFR3
is essential for lymphatic endothelial cell (EC)
development and function. It has been shown to regulate
adaptive immunity during corneal transplantation. VEGFR3
is upregulated on blood vascular ECs in pathological
conditions such as vascular tumors and the periphery of
solid tumors. It plays a role in cancer progression and
lymph node metastasis. Missense mutations in the VEGFR3
gene are associated with primary human lymphedema.
Length = 338
Score = 53.1 bits (127), Expect = 3e-07
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 17/110 (15%)
Query: 115 YIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGT 174
Y +++A+ +++L +HRD+ N+LLS +K+ DFG A + K+
Sbjct: 179 YSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKD----------- 227
Query: 175 PEYV----APEVLEWMEGNHGSDG-YTGSCDLWSIGVVSYELLT-GSTPF 218
P+YV A L+WM D YT D+WS GV+ +E+ + G++P+
Sbjct: 228 PDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPY 277
>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine
Kinase, Epidermal Growth Factor Receptor. Protein
Tyrosine Kinase (PTK) family; Epidermal Growth Factor
Receptor (EGFR); catalytic (c) domain. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EGFR
(HER1, ErbB1) is a member of the EGFR (HER, ErbB)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular EGF-related
ligand-binding region, a transmembrane helix, and a
cytoplasmic region with a tyr kinase domain and a
regulatory C-terminal tail. Unlike other tyr kinases,
phosphorylation of the activation loop of EGFR proteins
is not critical to their activation. Instead, they are
activated by ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands for EGFR include EGF, heparin binding
EGF-like growth factor (HBEGF), epiregulin,
amphiregulin, TGFalpha, and betacellulin. Upon ligand
binding, EGFR can form homo- or heterodimers with other
EGFR subfamily members. The EGFR signaling pathway is
one of the most important pathways regulating cell
proliferation, differentiation, survival, and growth.
Overexpression and mutation in the kinase domain of EGFR
have been implicated in the development and progression
of a variety of cancers. A number of monoclonal
antibodies and small molecule inhibitors have been
developed that target EGFR, including the antibodies
Cetuximab and Panitumumab, which are used in combination
with other therapies for the treatment of colorectal
cancer and non-small cell lung carcinoma (NSCLC). The
small molecule inhibitors Gefitinib (Iressa) and
Erlotinib (Tarceva), already used for NSCLC, are
undergoing clinical trials for other types of cancer
including gastrointestinal, breast, head and neck, and
bladder.
Length = 316
Score = 52.7 bits (126), Expect = 3e-07
Identities = 55/225 (24%), Positives = 99/225 (44%), Gaps = 38/225 (16%)
Query: 15 SDFDIKRFIQQGNFGDIY---LVEEKQSHNTFVMKKVLREKMPNTIERDIMVKSKCPYIV 71
++F + + G FG +Y + E + V K LRE ++I+ ++ Y++
Sbjct: 7 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEA---YVM 63
Query: 72 NLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHG----YLSESKARF-------YIYELA 120
+ D HV ++ + + P G Y+ E K + ++A
Sbjct: 64 ----ASVDNPHVCRLLGICLTSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIA 119
Query: 121 QAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSI----VPVGTPE 176
+ + YL VHRD+ N+L+ H+K+TDFG A + + + VP+ +
Sbjct: 120 KGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPI---K 176
Query: 177 YVAPE-VLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPFN 219
++A E +L + YT D+WS GV +EL+T GS P++
Sbjct: 177 WMALESILHRI--------YTHQSDVWSYGVTVWELMTFGSKPYD 213
>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine
Kinase, Fibroblast Growth Factor Receptor 3. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor 3 (FGFR3); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. FGFR3 is
part of the FGFR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular
ligand-binding region with three immunoglobulin-like
domains, a transmembrane segment, and an intracellular
catalytic domain. The binding of FGFRs to their ligands,
the FGFs, results in receptor dimerization and
activation, and intracellular signaling. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. Many FGFR3 splice
variants have been reported with the IIIb and IIIc
isoforms being the predominant forms. FGFR3 IIIc is the
isoform expressed in chondrocytes, the cells affected in
dwarfism, while IIIb is expressed in epithelial cells.
FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and
FGF23. It is a negative regulator of long bone growth.
In the cochlear duct and in the lens, FGFR3 is involved
in differentiation while it appears to have a role in
cell proliferation in epithelial cells. Germline
mutations in FGFR3 are associated with skeletal
disorders including several forms of dwarfism. Some
missense mutations are associated with multiple myeloma
and carcinomas of the bladder and cervix. Overexpression
of FGFR3 is found in thyroid carcinoma.
Length = 334
Score = 52.7 bits (126), Expect = 3e-07
Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 50/243 (20%)
Query: 12 VSASDFDIKRFIQQGNFGDIYLVE------EKQSHNTFVMKKVLREKMPNTIERDI---- 61
+S + + + + +G FG + + E +K + V K+L++ + D+
Sbjct: 9 LSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEM 68
Query: 62 -MVK--SKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLE-NQPHGY--------LSE 109
M+K K I+NL + +Y ++EY + G+ L +P G L E
Sbjct: 69 EMMKMIGKHKNIINLLGACTQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPE 128
Query: 110 SKARFY-----IYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDK-- 162
+ F Y++A+ ++YL +HRD+ N+L++ +K+ DFG A V
Sbjct: 129 EQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNID 188
Query: 163 ------NGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GS 215
NGR+ PV +++APE L YT D+WS GV+ +E+ T G
Sbjct: 189 YYKKTTNGRL----PV---KWMAPEAL-------FDRVYTHQSDVWSFGVLLWEIFTLGG 234
Query: 216 TPF 218
+P+
Sbjct: 235 SPY 237
>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine
Kinase-like Protein Tyrosine Kinases. Protein Tyrosine
Kinase (PTK) family; Spleen Tyrosine Kinase (Syk)
subfamily; catalytic (c) domain. The Syk subfamily is
composed of Syk, ZAP-70, Shark, and similar proteins.
The PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk
subfamily kinases are cytoplasmic (or nonreceptor) tyr
kinases containing two Src homology 2 (SH2) domains
N-terminal to the catalytic tyr kinase domain. They are
involved in the signaling downstream of activated
receptors (including B-cell, T-cell, and Fc receptors)
that contain ITAMs (immunoreceptor tyr activation
motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. Syk is important in B-cell
receptor (BCR) signaling, while Zap-70 is primarily
expressed in T-cells and NK cells, and is a crucial
component in T-cell receptor (TCR) signaling. Syk also
plays a central role in Fc receptor-mediated
phagocytosis in the adaptive immune system. Shark is
exclusively expressed in ectodermally derived epithelia,
and is localized preferentially to the apical surface of
the epithelial cells, it may play a role in a signaling
pathway for epithelial cell polarity.
Length = 257
Score = 51.6 bits (124), Expect = 5e-07
Identities = 49/229 (21%), Positives = 93/229 (40%), Gaps = 41/229 (17%)
Query: 23 IQQGNFGDI---YLVEEKQSHNTFVMKKVLREKMPN-----TIERDIMVKSKCPYIVNLF 74
+ GNFG + + + +K + +E + E +M + P IV L
Sbjct: 3 LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLI 62
Query: 75 -YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVH 133
+ + +ME G + L+ + + S + +++A + YL +VH
Sbjct: 63 GVCKGEP--LMLVMELAPLGPLLKYLKKRRE--IPVSDLKELAHQVAMGMAYLESKHFVH 118
Query: 134 RDIKPDNMLLSATGHLKLTDFG--SATQVDKN-------GRIKSIVPVGTPEYVAPEVLE 184
RD+ N+LL K++DFG A + GR P+ ++ APE +
Sbjct: 119 RDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRW----PL---KWYAPECIN 171
Query: 185 WMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPFNYETLDMTYSSILA 232
+ + + S D+WS GV +E + G+ P+ +M + ++A
Sbjct: 172 YGKFSSKS-------DVWSYGVTLWEAFSYGAKPYG----EMKGAEVIA 209
>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase;
Provisional.
Length = 507
Score = 52.0 bits (124), Expect = 7e-07
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 126 LHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVL 183
LH +G VHRDIKP+N+L++ G +K+ DFG+A + + + P Y PE L
Sbjct: 325 LHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEEL 382
>gnl|CDD|133246 cd05115, PTKc_Zap-70, Catalytic domain of the Protein Tyrosine
Kinase, Zeta-chain-associated protein of 70kDa. Protein
Tyrosine Kinase (PTK) family; Zeta-chain-associated
protein of 70kDa (Zap-70); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Zap-70 is
a member of the Syk subfamily of kinases, which are
cytoplasmic (or nonreceptor) tyr kinases containing two
Src homology 2 (SH2) domains N-terminal to the catalytic
tyr kinase domain. Zap-70 is primarily expressed in
T-cells and NK cells, and is a crucial component in
T-cell receptor (TCR) signaling. Zap-70 binds the
phosphorylated ITAM (immunoreceptor tyr activation
motif) sequences of the activated TCR zeta-chain through
its SH2 domains, leading to its phosphorylation and
activation. It then phosphorylates target proteins,
which propagate the signals to downstream pathways.
Zap-70 is hardly detected in normal peripheral B-cells,
but is present in some B-cell malignancies. It is used
as a diagnostic marker for chronic lymphocytic leukemia
(CLL) as it is associated with the more aggressive
subtype of the disease.
Length = 257
Score = 50.7 bits (121), Expect = 9e-07
Identities = 51/209 (24%), Positives = 94/209 (44%), Gaps = 31/209 (14%)
Query: 26 GNFG----DIYLVEEKQSHNTFVMKKVLREKMPNTI------ERDIMVKSKCPYIVNLFY 75
GNFG +Y + +KQ V KVL+ + ++ E +IM + PYIV +
Sbjct: 6 GNFGCVKKGVYKMRKKQID---VAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIG 62
Query: 76 SFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRD 135
+ + +ME +GG L + + +++++ ++YL G +VHRD
Sbjct: 63 VCEAEA-LMLVMEMASGGPLNKFLSGKKDEITVSNVVEL-MHQVSMGMKYLEGKNFVHRD 120
Query: 136 IKPDNMLLSATGHLKLTDFG--SATQVDKN---GRIKSIVPVGTPEYVAPEVLEWMEGNH 190
+ N+LL + K++DFG A D + R P+ ++ APE + + +
Sbjct: 121 LAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPL---KWYAPECINFRK--- 174
Query: 191 GSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
++ D+WS G+ +E + G P+
Sbjct: 175 ----FSSRSDVWSYGITMWEAFSYGQKPY 199
>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine
Kinase, Vascular Endothelial Growth Factor Receptor 2.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR2 (or Flk1) is a member of the VEGFR subfamily of
proteins, which are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of VEGFRs to their ligands, the VEGFs, leads to
receptor dimerization, activation, and intracellular
signaling. The carboxyl terminus of VEGFR2 plays an
important role in its autophosphorylation and
activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD
and VEGFE. VEGFR2 signaling is implicated in all aspects
of normal and pathological vascular endothelial cell
biology. It induces a variety of cellular effects
including migration, survival, and proliferation. It is
critical in regulating embryonic vascular development
and angiogenesis. VEGFR2 is the major signal transducer
in pathological angiogenesis including cancer and
diabetic retinopathy, and is a target for inhibition in
cancer therapy.
Length = 343
Score = 51.2 bits (122), Expect = 1e-06
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 17/110 (15%)
Query: 115 YIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGT 174
Y +++A+ +++L +HRD+ N+LLS +K+ DFG A + K+
Sbjct: 184 YSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKD----------- 232
Query: 175 PEYV----APEVLEWMEGNHGSDG-YTGSCDLWSIGVVSYELLT-GSTPF 218
P+YV A L+WM D YT D+WS GV+ +E+ + G++P+
Sbjct: 233 PDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPY 282
>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine
Kinase, HER2. Protein Tyrosine Kinase (PTK) family;
HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER2 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER2 does not bind to any known EGFR
subfamily ligands, but contributes to the kinase
activity of all possible heterodimers. It acts as the
preferred partner with other ligand-bound EGFR proteins
and functions as a signal amplifier, with the HER2-HER3
heterodimer being the most potent pair in mitogenic
signaling. HER2 plays an important role in cell
development, proliferation, survival and motility.
Overexpression of HER2 results in its activation and
downstream signaling, even in the absence of ligand.
HER2 overexpression, mainly due to gene amplification,
has been shown in a variety of human cancers. Its role
in breast cancer is especially well-documented. HER2 is
up-regulated in about 25% of breast tumors and is
associated with increases in tumor aggressiveness,
recurrence and mortality. HER2 is a target for
monoclonal antibodies and small molecule inhibitors,
which are being developed as treatments for cancer. The
first humanized antibody approved for clinical use is
Trastuzumab (Herceptin), which is being used in
combination with other therapies to improve the survival
rates of patients with HER2-overexpressing breast
cancer.
Length = 279
Score = 50.4 bits (120), Expect = 1e-06
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 26/133 (19%)
Query: 103 PHG----YLSESKARF-------YIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKL 151
P+G Y+ E+K R + ++A+ + YL + VHRD+ N+L+ + H+K+
Sbjct: 91 PYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKI 150
Query: 152 TDFGSATQVDKNGRIKSIVPVGTPEYVA---PEVLEWME-GNHGSDGYTGSCDLWSIGVV 207
TDFG A +D + EY A ++WM + +T D+WS GV
Sbjct: 151 TDFGLARLLD----------IDETEYHADGGKVPIKWMALESILHRRFTHQSDVWSYGVT 200
Query: 208 SYELLT-GSTPFN 219
+EL+T G+ P++
Sbjct: 201 VWELMTFGAKPYD 213
>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine
Kinase, Colon Carcinoma Kinase 4. Protein Tyrosine
Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4);
pseudokinase domain. The PTKc (catalytic domain) family,
to which this subfamily belongs, includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CCK4,
also called protein tyrosine kinase 7 (PTK7), is an
orphan receptor tyr kinase (RTK) containing an
extracellular region with seven immunoglobulin domains,
a transmembrane segment, and an intracellular inactive
pseudokinase domain. Studies in mice reveal that CCK4 is
essential for neural development. Mouse embryos
containing a truncated CCK4 die perinatally and display
craniorachischisis, a severe form of neural tube defect.
The mechanism of action of the CCK4 pseudokinase is
still unknown. Other pseudokinases such as HER3 rely on
the activity of partner RTKs.
Length = 275
Score = 50.2 bits (120), Expect = 1e-06
Identities = 49/217 (22%), Positives = 97/217 (44%), Gaps = 31/217 (14%)
Query: 23 IQQGNFGDIYLVEEK----QSHNTFVMKKVLREKMPNTI------ERDIMVKSKCPYIVN 72
+ +G FG+++L + K + T V+ K L++ + E D+ K +V
Sbjct: 13 LGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVR 72
Query: 73 LFYSFQDMNHVYFIMEYVTGGDFVT-LLENQPHGYLSE-----SKARFYI-YELAQAVQY 125
L ++ Y I+EY GD L + + +K + + ++A + +
Sbjct: 73 LLGLCREAEPHYMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDH 132
Query: 126 LHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIK---SIVPVGTPEYVAPEV 182
L +VHRD+ N L+S+ +K++ + V + K +++P+ ++APE
Sbjct: 133 LSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPL---RWLAPEA 189
Query: 183 LEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
++ D ++ D+WS GV+ +E+ T G PF
Sbjct: 190 VQ-------EDDFSTKSDVWSFGVLMWEVFTQGELPF 219
>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine
Kinase, HER4. Protein Tyrosine Kinase (PTK) family;
HER4 (ErbB4); catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER4 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. Ligands that bind HER4 fall into two groups,
the neuregulins (or heregulins) and some EGFR (HER1)
ligands including betacellulin, HBEGF, and epiregulin.
All four neuregulins (NRG1-4) interact with HER4. Upon
ligand binding, HER4 forms homo- or heterodimers with
other HER proteins. HER4 is essential in embryonic
development. It is implicated in mammary gland, cardiac,
and neural development. As a postsynaptic receptor of
NRG1, HER4 plays an important role in synaptic
plasticity and maturation. The impairment of NRG1/HER4
signaling may contribute to schizophrenia.
Length = 303
Score = 50.5 bits (120), Expect = 2e-06
Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 30/215 (13%)
Query: 21 RFIQQGNFGDIY---LVEEKQSHNTFVMKKVLREKMPNTIERDIMVKSKCPYIVNLFYSF 77
+ + G FG +Y V E ++ V K+L E + M ++ L +
Sbjct: 13 KVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEA-------LIMAS 65
Query: 78 QDMNHVYFIMEYVTGGDFVTLLENQPHG----YLSESKARF-------YIYELAQAVQYL 126
D H+ ++ + + PHG Y+ E K + ++A+ + YL
Sbjct: 66 MDHPHLVRLLGVCLSPTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYL 125
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTP-EYVAPEVLEW 185
VHRD+ N+L+ + H+K+TDFG A ++ + + + P +++A E + +
Sbjct: 126 EERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHY 185
Query: 186 MEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPFN 219
+ H S D+WS GV +EL+T G P++
Sbjct: 186 RKFTHQS-------DVWSYGVTIWELMTFGGKPYD 213
>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine
Kinase, Tie2. Protein Tyrosine Kinase (PTK) family;
Tie2; catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tie2 is a receptor tyr
kinase (RTK) containing an extracellular region, a
transmembrane segment, and an intracellular catalytic
domain. The extracellular region contains an
immunoglobulin (Ig)-like domain, three epidermal growth
factor (EGF)-like domains, a second Ig-like domain, and
three fibronectin type III repeats. Tie2 is expressed
mainly in endothelial cells and hematopoietic stem
cells. It is also found in a subset of tumor-associated
monocytes and eosinophils. The angiopoietins (Ang-1 to
Ang-4) serve as ligands for Tie2. The binding of Ang-1
to Tie2 leads to receptor autophosphorylation and
activation, promoting cell migration and survival. In
contrast, Ang-2 binding to Tie2 does not result in the
same response, suggesting that Ang-2 may function as an
antagonist. Tie2 signaling plays key regulatory roles in
vascular integrity and quiescence, and in inflammation.
Length = 303
Score = 50.0 bits (119), Expect = 2e-06
Identities = 62/255 (24%), Positives = 104/255 (40%), Gaps = 43/255 (16%)
Query: 15 SDFDIKRFIQQGNFGDIYLVE-EKQSHNTFVMKKVLREKMPNTIERDIM--VKSKC---- 67
+D + I +GNFG + +K K ++E RD ++ C
Sbjct: 7 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 66
Query: 68 -PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLE--------------NQPHGYLSESKA 112
P I+NL + + ++Y +EY G+ + L N LS +
Sbjct: 67 HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 126
Query: 113 RFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFG-SATQVDKNGRIKSIVP 171
+ ++A+ + YL ++HRD+ N+L+ K+ DFG S Q + +P
Sbjct: 127 LHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLP 186
Query: 172 VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPFN-------YETL 223
V ++A E L + YT + D+WS GV+ +E+++ G TP+ YE L
Sbjct: 187 V---RWMAIESLNY-------SVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKL 236
Query: 224 DMTY--SSILACDTE 236
Y L CD E
Sbjct: 237 PQGYRLEKPLNCDDE 251
>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA10
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). EphA10,
which contains an inactive tyr kinase domain, may
function to attenuate signals of co-clustered active
receptors. EphA10 is mainly expressed in the testis.
Ephrin/EphR interaction results in cell-cell repulsion
or adhesion, making it important in neural development
and plasticity, cell morphogenesis, cell-fate
determination, embryonic development, tissue patterning,
and angiogenesis.
Length = 266
Score = 49.5 bits (118), Expect = 2e-06
Identities = 39/165 (23%), Positives = 79/165 (47%), Gaps = 16/165 (9%)
Query: 81 NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
N + + EY++ G + L G L + + LA ++YL +GYVH+ +
Sbjct: 79 NTMMIVTEYMSNGALDSFLRKH-EGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHK 137
Query: 141 MLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPE-YVAPEVLEWMEGNHGSDGYTGSC 199
+L+++ K++ F Q DK+ I + + +P + APE +++ ++ +
Sbjct: 138 VLVNSDLVCKISGFRRL-QEDKSEAIYTTMSGKSPVLWAAPEAIQYHH-------FSSAS 189
Query: 200 DLWSIGVVSYELLT-GSTPFNYETLDMTYSSILACDTEDTVSFPS 243
D+WS G+V +E+++ G P+ DM+ ++ ED P+
Sbjct: 190 DVWSFGIVMWEVMSYGERPY----WDMSGQDVIKA-VEDGFRLPA 229
>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine
Kinases, Fibroblast Growth Factor Receptors. Protein
Tyrosine Kinase (PTK) family; Fibroblast Growth Factor
Receptor (FGFR) subfamily; catalytic (c) domain. The
FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4,
and similar proteins. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K).PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. FGFR subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with three
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
FGFRs to their ligands, the FGFs, and to heparin/heparan
sulfate (HS) results in the formation of a ternary
complex, which leads to receptor dimerization and
activation, and intracellular signaling. There are at
least 23 FGFs and four types of FGFRs. The binding of
FGFs to FGFRs is promiscuous, in that a receptor may be
activated by several ligands and a ligand may bind to
more that one type of receptor. FGF/FGFR signaling is
important in the regulation of embryonic development,
homeostasis, and regenerative processes. Depending on
the cell type and stage, FGFR signaling produces diverse
cellular responses including proliferation, growth
arrest, differentiation, and apoptosis. Aberrant
signaling leads to many human diseases such as skeletal,
olfactory, and metabolic disorders, as well as cancer.
Length = 293
Score = 49.7 bits (119), Expect = 2e-06
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 54/231 (23%)
Query: 25 QGNFGDIYLVE----EKQSHNTFVMKKVLREKMPNTIERDI--------MVKS--KCPYI 70
+G FG + E + + + V K+L++ + E+D+ M+K K I
Sbjct: 22 EGAFGQVVKAEAVGLDNPNETSTVAVKMLKD---DATEKDLSDLVSEMEMMKMIGKHKNI 78
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLE-NQPHG-YLSESKARFYI------------ 116
+NL +Y ++EY G+ L +P G Y S R
Sbjct: 79 INLLGVCTQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFA 138
Query: 117 YELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDK--------NGRIKS 168
Y++A+ +++L +HRD+ N+L++ +K+ DFG A + NGR+
Sbjct: 139 YQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRL-- 196
Query: 169 IVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
PV +++APE L YT D+WS GV+ +E+ T G +P+
Sbjct: 197 --PV---KWMAPEALF-------DRVYTHQSDVWSFGVLLWEIFTLGGSPY 235
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 50.8 bits (122), Expect = 3e-06
Identities = 102/457 (22%), Positives = 175/457 (38%), Gaps = 67/457 (14%)
Query: 358 RDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQ 417
+ + QL QL EAK SLE+ S R R LQAQ+ L+ DL S L ++ E L +
Sbjct: 236 KLKSQLESQLEEAKRSLEEES--RER-ANLQAQLRQLEHDLDSLREQLEEESEAKAELER 292
Query: 418 EMVKKESDLVATSS----DLVATRHELEEVR-------SELKEK--------ENLEKTDD 458
++ K +++ S + ELEE++ SEL+E ++LEKT
Sbjct: 293 QLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKS 352
Query: 459 R-KLEVCEVSKELEVLRGELEE----QKTATKQ---WKKDWYQSVKERNAAVAELKQAQT 510
R + E+ ++ ELE E QK K WK+ + E + A E + T
Sbjct: 353 RLQSELEDLQIELERANAAASELEKKQKNFDKILAEWKRKVDELQAELDTAQREARNLST 412
Query: 511 EN-------EALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQ 563
E E LK+++ +L +E K ++ + + L R + ++K +
Sbjct: 413 ELFRLKNELEELKDQVEALRRENKNLQDEIHDLTDQLGEGGR-------NVHELEKARRR 465
Query: 564 SAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIEL 623
E+ E+ E + +S R ++E+ + ++E RR E K++ E
Sbjct: 466 LEAEKDELQAALEEAEAALE---LEESKVLRAQVELSQIRSEIE--RRLAE--KEEEFEN 518
Query: 624 RAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENK 683
K+ ++A L E K K RL + KLE EL +
Sbjct: 519 TRKN-HQRAIESLQATLEAEAKGKAEASRL-----------KKKLEGDINELEIALDHAN 566
Query: 684 KLKVSFFFTLESNSLFWLDPNTFLS----SLEDLKSNYTERESKLRSANEIIGEYETKIT 739
K ++ + T + + ED + E + + + E + +
Sbjct: 567 KANAEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALE 626
Query: 740 ALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQL 776
E ++E+ E E + L N L +L
Sbjct: 627 QAERARKQAETELAEASERVNELTAQNSSLIAQKRKL 663
Score = 48.5 bits (116), Expect = 1e-05
Identities = 78/347 (22%), Positives = 140/347 (40%), Gaps = 73/347 (21%)
Query: 354 RHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEID 413
R + ++ +L L EA+A+LE ++VL Q ++S ++ ++ L++KEEE +
Sbjct: 464 RRLEAEKDELQAALEEAEAALELEE---SKVLRAQVELSQIRSEIERR---LAEKEEEFE 517
Query: 414 RLRQEMVKKESDLVAT-------SSDLVATRHELEEVRSEL--------KEKENLEKT-- 456
R+ + L AT ++ + +LE +EL K +K
Sbjct: 518 NTRKNHQRAIESLQATLEAEAKGKAEASRLKKKLEGDINELEIALDHANKANAEAQKNVK 577
Query: 457 --------------------DDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVK 496
+D + ++ + L ELEE ++A +Q ++ Q+
Sbjct: 578 KYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALEQAERARKQAET 637
Query: 497 ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLD--------------- 541
E A + + +N +L + LE EL + L A N L
Sbjct: 638 ELAEASERVNELTAQNSSLIAQKRKLEGELAALQSDLDEAVNELKAAEERAKKAQADAAR 697
Query: 542 --SKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEV 599
+LR+ Q S +E ++K++E V+E+ ++ E L K ++LE V
Sbjct: 698 LAEELRQEQEHSQHLERLRKQLESQ---VKELQVRLDEAE--AAALKGGKKMIQKLEARV 752
Query: 600 RGYKLDLES-TRRELETNKDQTIELRAKSKLEKAEGELTTVREENKK 645
R + +L+ RR ET K+ K+E+ EL EE+KK
Sbjct: 753 RELEAELDGEQRRHAETQKNLR-------KMERRVKELQFQVEEDKK 792
Score = 37.3 bits (87), Expect = 0.034
Identities = 71/298 (23%), Positives = 133/298 (44%), Gaps = 39/298 (13%)
Query: 350 SEDMRHWKRDRLQ---LLQQLAEAKASLED----LSCSRTRVLALQAQVSSLQQDLTSHT 402
+E ++ K+ + Q L Q+ E + + ED L+ + R AL+A++ L+ L
Sbjct: 570 AEAQKNVKKYQQQVKELQTQVEEEQRAREDAREQLAVAERRATALEAELEELRSALEQAE 629
Query: 403 SLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELE----EVRSELKEKEN-LEKTD 457
+ E E+ + + ++L A +S L+A + +LE ++S+L E N L+ +
Sbjct: 630 RARKQAETELAEASERV----NELTAQNSSLIAQKRKLEGELAALQSDLDEAVNELKAAE 685
Query: 458 DR-KLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALK 516
+R K + ++ E LR E E + + +K VKE + E + A + K
Sbjct: 686 ERAKKAQADAARLAEELRQEQEHSQHLERL-RKQLESQVKELQVRLDEAEAAALKG--GK 742
Query: 517 EKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISE 576
+ + LE ++ E L Q R H QK + + RV+E+
Sbjct: 743 KMIQKLEARVRELEAELDGEQ-------RRHA-------ETQKNLRKMERRVKELQ---F 785
Query: 577 KYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEG 634
+ E+D+K L L+ ++L+ +++ YK LE E + + +A+ +LE AE
Sbjct: 786 QVEEDKKNLERLQDLVDKLQAKIKTYKRQLEEA--EEVAQINLSKYRKAQRELEDAEE 841
Score = 35.8 bits (83), Expect = 0.12
Identities = 66/328 (20%), Positives = 128/328 (39%), Gaps = 65/328 (19%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRV----LALQAQVSSLQQDL-------TSHTSLLSKKEE 410
+L ++ E + LE +R + L ++ L + L + L K+E
Sbjct: 43 ELEARIRELEEELEAERAARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREA 102
Query: 411 EIDRLRQ--------------EMVKKESDLVATSSDLV---------------ATRHELE 441
E+ +LR+ + KK D + S+ + + E++
Sbjct: 103 ELAKLRKDLEEANLQHEEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVD 162
Query: 442 EVRSEL----KEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKE 497
++ ++L K K N EK +K+LE EL+ K Q + + S K
Sbjct: 163 DLLAQLDQIAKAKLNAEK----------KAKQLESQLSELQ-VKLDELQRQLNDLTSQKS 211
Query: 498 R-NAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIES 556
R + ++L + E EA L+ L+ +L E L A+ SL+ + RE L +
Sbjct: 212 RLQSENSDLTRQLEEAEAQVSNLSKLKSQL---ESQLEEAKRSLEEESRERANLQAQLRQ 268
Query: 557 MQKEMEQSAVRVREMSGISEKYEKD-RKTLLELKSAKERLELEVRGYKLDLESTRRELET 615
++ +++ ++ E S + E+ K E++ + + E E +LE +++L
Sbjct: 269 LEHDLDSLREQLEEESEAKAELERQLSKANAEIQQWRSKFESEGALRAEELEELKKKLNQ 328
Query: 616 N----KDQTIELRAK-SKLEKAEGELTT 638
++ AK LEK + L +
Sbjct: 329 KISELEEAAEAANAKCDSLEKTKSRLQS 356
Score = 35.4 bits (82), Expect = 0.13
Identities = 82/359 (22%), Positives = 145/359 (40%), Gaps = 45/359 (12%)
Query: 358 RDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQ 417
R + +L QL ++ L LS +++ QA V+ LQ+ + + + + EEE++ R
Sbjct: 4 RQKRELENQLYRKESELSQLS---SKLEDEQALVAQLQKKIKELEARIRELEEELEAERA 60
Query: 418 EMVKKESDLVATSSDLVATRHELEE------VRSELKEKENLEKTDDRK-LEVCEVSKE- 469
K E S +L LEE + EL +K E RK LE + E
Sbjct: 61 ARAKAEKARADLSRELEELSERLEEAGGATAAQIELNKKREAELAKLRKDLEEANLQHEE 120
Query: 470 -LEVLRG--------------ELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEA 514
L LR +L++QK ++ K V + A + ++ +A+ E
Sbjct: 121 ALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQIAKAKLNAEK 180
Query: 515 LKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRV----RE 570
++L S EL+V + L N L S+ L + + +++E++ +V +
Sbjct: 181 KAKQLESQLSELQVKLDELQRQLNDLTSQK---SRLQSENSDLTRQLEEAEAQVSNLSKL 237
Query: 571 MSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELR------ 624
S + + E+ +++L E + L+ ++R + DL+S R +LE + EL
Sbjct: 238 KSQLESQLEEAKRSLEEESRERANLQAQLRQLEHDLDSLREQLEEESEAKAELERQLSKA 297
Query: 625 ------AKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTT 677
+SK E EE KK KI + + LEK + L +
Sbjct: 298 NAEIQQWRSKFESEGALRAEELEELKKKLNQKISELEEAAEAANAKCDSLEKTKSRLQS 356
>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase,
Interleukin-2-inducible T-cell Kinase. Protein Tyrosine
Kinase (PTK) family; Interleukin-2 (IL-2)-inducible
T-cell kinase (Itk); catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Itk (also
known as Tsk or Emt) is a member of the Tec subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases with similarity to Src kinases in that they
contain Src homology protein interaction domains (SH3,
SH2) N-terminal to the catalytic tyr kinase domain.
Unlike Src kinases, most Tec subfamily members (except
Rlk) also contain an N-terminal pleckstrin homology (PH)
domain, which binds the products of PI3K and allows
membrane recruitment and activation. In addition, Itk
contains the Tec homology (TH) domain containing one
proline-rich region and a zinc-binding region. Tec
kinases are expressed mainly by haematopoietic cells.
Itk is expressed in T-cells and mast cells, and is
important in their development and differentiation. Of
the three Tec kinases expressed in T-cells, Itk plays
the predominant role in T-cell receptor (TCR) signaling.
It is activated by phosphorylation upon TCR crosslinking
and is involved in the pathway resulting in
phospholipase C-gamma1 activation and actin
polymerization. It also plays a role in the downstream
signaling of the T-cell costimulatory receptor CD28, the
T-cell surface receptor CD2, and the chemokine receptor
CXCR4. In addition, Itk is crucial for the development
of T-helper(Th)2 effector responses.
Length = 256
Score = 49.2 bits (117), Expect = 3e-06
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 9/166 (5%)
Query: 58 ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIY 117
E +M+K P +V L+ + + + + E++ G L Q G S+
Sbjct: 49 EAQVMMKLSHPKLVQLYGVCTERSPICLVFEFMEHGCLSDYLRAQ-RGKFSQETLLGMCL 107
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEY 177
++ + + YL +HRD+ N L+ +K++DFG V + S ++
Sbjct: 108 DVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKW 167
Query: 178 VAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPFNYET 222
+PEV + + Y+ D+WS GV+ +E+ + G TP+ +
Sbjct: 168 SSPEVFSFSK-------YSSKSDVWSFGVLMWEVFSEGKTPYENRS 206
>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine
Kinases, Vascular Endothelial Growth Factor Receptors.
Protein Tyrosine Kinase (PTK) family; Vascular
Endothelial Growth Factor Receptor (VEGFR) subfamily;
catalytic (c) domain. The VEGFR subfamily consists of
VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar
proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
VEGFR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular ligand-binding region with
seven immunoglobulin (Ig)-like domains, a transmembrane
segment, and an intracellular catalytic domain. In
VEGFR3, the fifth Ig-like domain is replaced by a
disulfide bridge. The binding of VEGFRs to their
ligands, the VEGFs, leads to receptor dimerization,
activation, and intracellular signaling. There are five
VEGF ligands in mammals, which bind, in an overlapping
pattern to the three VEGFRs, which can form homo or
heterodimers. VEGFRs regulate the cardiovascular system.
They are critical for vascular development during
embryogenesis and blood vessel formation in adults. They
induce cellular functions common to other growth factor
receptors such as cell migration, survival, and
proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta
growth factor (PLGF). It regulates monocyte and
macrophage migration, vascular permeability,
haematopoiesis, and the recruitment of haematopietic
progenitor cells from the bone marrow.
Length = 337
Score = 49.8 bits (119), Expect = 3e-06
Identities = 34/110 (30%), Positives = 58/110 (52%), Gaps = 17/110 (15%)
Query: 115 YIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGT 174
Y +++A+ +++L +HRD+ N+LLS +K+ DFG A + K+
Sbjct: 178 YSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKD----------- 226
Query: 175 PEYV----APEVLEWMEGNHGSDG-YTGSCDLWSIGVVSYELLT-GSTPF 218
P+YV A L+WM D YT D+WS GV+ +E+ + G++P+
Sbjct: 227 PDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGASPY 276
>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine
Kinase, Activated Cdc42-associated kinase. Protein
Tyrosine Kinase (PTK) family; Activated Cdc42-associated
kinase (Ack) subfamily; catalytic (c) domain. Ack
subfamily members include Ack1, thirty-eight-negative
kinase 1 (Tnk1), and similar proteins. The PTKc family
is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ack
subfamily members are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal catalytic domain, an
SH3 domain, a Cdc42-binding CRIB domain, and a
proline-rich region. They are mainly expressed in brain
and skeletal tissues and are involved in the regulation
of cell adhesion and growth, receptor degradation, and
axonal guidance. Ack1 is also associated with
androgen-independent prostate cancer progression. Tnk1
regulates TNFalpha signaling and may play an important
role in cell death.
Length = 257
Score = 49.3 bits (118), Expect = 3e-06
Identities = 50/210 (23%), Positives = 86/210 (40%), Gaps = 25/210 (11%)
Query: 23 IQQGNFGDIYLVEEKQSHNTF--VMKKVLR-EKMPNTI-----ERDIMVKSKCPYIVNLF 74
+ G+FG + E S V K L+ +K+ + + E IM ++ L
Sbjct: 3 LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRL- 61
Query: 75 YSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHR 134
Y + + + E G + L G+ S Y ++A ++YL ++HR
Sbjct: 62 YGVVLTHPLMMVTELAPLGSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHR 121
Query: 135 DIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSI-----VPVGTPEYVAPEVLEWMEGN 189
D+ N+LL++ +K+ DFG + +N + VP + APE L +
Sbjct: 122 DLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFA---WCAPESLRTRTFS 178
Query: 190 HGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
H S D+W GV +E+ T G P+
Sbjct: 179 HAS-------DVWMFGVTLWEMFTYGEEPW 201
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 50.7 bits (121), Expect = 3e-06
Identities = 59/346 (17%), Positives = 120/346 (34%), Gaps = 38/346 (10%)
Query: 437 RHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVK 496
R E+EE + +EK ++ + +E E EL + EL+ Q+ K
Sbjct: 156 RLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQEL-----KLKEQAKKA 210
Query: 497 ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIES 556
+ E + + EN + L E+ + + +E L Q ++S +E + +
Sbjct: 211 LEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQ 270
Query: 557 MQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETN 616
+ KE ++ + + K+ + L ER +++ + E ++LE
Sbjct: 271 VLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKE 330
Query: 617 KDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELT 676
+ E + + E E E+ EE ++ +LEK + +L
Sbjct: 331 LKKEKEEIEELEKELKELEIKREAEEEEE--------------------EQLEKLQEKLE 370
Query: 677 TVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYET 736
+ EE K L+ S+ + + + + + A ++ E
Sbjct: 371 QLEEELLAKKK-------------LESERLSSAAKLKEEELELKNEEEKEAKLLLELSEQ 417
Query: 737 KITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNND 782
+ L+ +E+ E LET Q + E+ K
Sbjct: 418 EEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLK 463
Score = 47.7 bits (113), Expect = 3e-05
Identities = 49/265 (18%), Positives = 102/265 (38%), Gaps = 21/265 (7%)
Query: 390 QVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKE 449
++ +Q+ + +KEEEI + K+E E + ELK
Sbjct: 245 ELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEK-------------EKKLQEEELKL 291
Query: 450 KENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQ 509
E+ +L E K + + + E++ + + + E + + +
Sbjct: 292 LAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIK 351
Query: 510 TENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVR 569
E E +E EQ K+ E+ + L K E + LS+ + ++E+E +
Sbjct: 352 REAEEEEE-----EQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELKNEEEK 406
Query: 570 EMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKL 629
E + E E++ L E K + ++ E+ + LE+ + +L K++ + K
Sbjct: 407 EAKLLLELSEQEEDLLKEEKKEELKIVEEL---EESLETKQGKLTEEKEELEKQALKLLK 463
Query: 630 EKAEGELTTVREENKKLKQGKIRLV 654
+K E + + + KL + +L
Sbjct: 464 DKLELKKSEDLLKETKLVKLLEQLE 488
Score = 41.9 bits (98), Expect = 0.002
Identities = 43/257 (16%), Positives = 88/257 (34%), Gaps = 12/257 (4%)
Query: 363 LLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKK 422
L Q L E K ++ + L + L+ +L EE++ +E+ K
Sbjct: 268 LAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKL 327
Query: 423 ESDLVATSSDLVATRHELEEV--RSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQ 480
E +L ++ EL+E+ + E +E+E + ++ + L + E E
Sbjct: 328 EKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERL 387
Query: 481 KTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSL 540
+A K +++ +E A L+ ++ E + LKE+ + ++ EE+L T Q
Sbjct: 388 SSAAKLKEEELELKNEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQ--- 444
Query: 541 DSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVR 600
Q + S + ++ + L + L ++
Sbjct: 445 -----GKLTEEKEELEKQALKLLKDKLELKKS--EDLLKETKLVKLLEQLELLLLRQKLE 497
Query: 601 GYKLDLESTRRELETNK 617
R L
Sbjct: 498 EASQKESKAREGLAVLL 514
Score = 37.3 bits (86), Expect = 0.037
Identities = 49/279 (17%), Positives = 117/279 (41%), Gaps = 17/279 (6%)
Query: 408 KEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVS 467
K ++ +RL++ + + E+ +L+ EL+ +LKE+ + E E+
Sbjct: 169 KRKKKERLKKLIEETENLA-----ELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELE 223
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
+E + L+ + ++ +E ++ EL++ + + ++ E+E K
Sbjct: 224 EENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKK 283
Query: 528 VSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE 587
+ EE L + E L ++++++S +++ + ++ +K+++ + E
Sbjct: 284 LQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKK---LEKELKKEKEEIEE 340
Query: 588 LKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLK 647
L+ + LE++ + + E + E + EL AK KLE +E +
Sbjct: 341 LEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELEL 400
Query: 648 QGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLK 686
+ + + A+ LE +E E ++EE K+
Sbjct: 401 KNEEE---------KEAKLLLELSEQEEDLLKEEKKEEL 430
Score = 36.9 bits (85), Expect = 0.050
Identities = 41/224 (18%), Positives = 83/224 (37%), Gaps = 3/224 (1%)
Query: 570 EMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKL 629
E + S + K ++ L +L E L + + + E K + K KL
Sbjct: 161 EEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKL 220
Query: 630 EKAEGELTTVREE--NKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKV 687
E E L + N++ L+ ++ + ++ +LEK E L V +ENK+ +
Sbjct: 221 ELEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEK 280
Query: 688 SFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYETKITALESTMTR 747
E L + S L L+ + E KL+ + + + + E ++ + +
Sbjct: 281 EKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEE 340
Query: 748 SESYCKEMVEYLETLQKNNDILSH-DNEQLRKKNNDILSHDNEQ 790
E KE+ E ++ + L + + + + E
Sbjct: 341 LEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLES 384
>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein
Tyrosine Kinase, Janus kinase 1. Protein Tyrosine
Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic
(c) domain (repeat 2). The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Jak1 is a member of the
Janus kinase (Jak) subfamily of proteins, which are
cytoplasmic (or nonreceptor) tyr kinases containing an
N-terminal FERM domain, followed by a Src homology 2
(SH2) domain, a pseudokinase domain, and a C-terminal
tyr kinase domain. Jaks are crucial for cytokine
receptor signaling. They are activated by
autophosphorylation upon cytokine-induced receptor
aggregation, and subsequently trigger downstream
signaling events such as the phosphorylation of signal
transducers and activators of transcription (STATs).
Jak1 is widely expressed in many tissues. Many cytokines
are dependent on Jak1 for signaling, including those
that use the shared receptor subunits common gamma chain
(IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6,
IL-11, oncostatin M, G-CSF, and IFNs, among others). The
many varied interactions of Jak1 and its ubiquitous
expression suggest many biological roles. Jak1 is
important in neurological development, as well as in
lymphoid development and function. It also plays a role
in the pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 284
Score = 49.2 bits (117), Expect = 3e-06
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 30/145 (20%)
Query: 81 NHVYFIMEYVTGGDFVTLLENQPHGYLSESKARF-------YIYELAQAVQYLHGLGYVH 133
N + IME++ G +L E YL +K + Y ++ + + YL YVH
Sbjct: 81 NGIKLIMEFLPSG---SLKE-----YLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVH 132
Query: 134 RDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSI-----VPVGTPEYVAPEVLEWMEG 188
RD+ N+L+ + +K+ DFG ++ + ++ PV + APE L
Sbjct: 133 RDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVF---WYAPECL----- 184
Query: 189 NHGSDGYTGSCDLWSIGVVSYELLT 213
S Y S D+WS GV YELLT
Sbjct: 185 -IQSKFYIAS-DVWSFGVTLYELLT 207
>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 1.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 1 (Ror1); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror kinases are expressed in many
tissues during development. Avian Ror1 was found to be
involved in late limb development. Studies in mice
reveal that Ror1 is important in the regulation of
neurite growth in central neurons, as well as in
respiratory development. Loss of Ror1 also enhances the
heart and skeletal abnormalities found in Ror2-deficient
mice.
Length = 283
Score = 48.8 bits (116), Expect = 5e-06
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 34/204 (16%)
Query: 58 ERDIMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVT-LLENQPHG----------- 105
E +M + P IV L V + EY+ GD L+ PH
Sbjct: 57 EASLMAELHHPNIVCLLGVVTQEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGT 116
Query: 106 ---YLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDK 162
L ++A ++YL +VH+D+ N+L+ H+K++D G + ++
Sbjct: 117 VKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYS 176
Query: 163 NG----RIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTP 217
+ KS++P+ ++ PE + M G SD D+WS GVV +E+ + G P
Sbjct: 177 ADYYRVQPKSLLPI---RWMPPEAI--MYGKFSSDS-----DIWSFGVVLWEIFSFGLQP 226
Query: 218 F----NYETLDMTYSSILACDTED 237
+ N E ++M L +ED
Sbjct: 227 YYGFSNQEVIEMVRKRQLLPCSED 250
>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain
Receptor-like Protein Tyrosine Kinases. Protein
Tyrosine Kinase (PTK) family; Discoidin Domain Receptor
(DDR)-like proteins; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR-like
proteins are members of the DDR subfamily, which are
receptor tyr kinases (RTKs) containing an extracellular
discoidin homology domain, a transmembrane segment, an
extended juxtamembrane region, and an intracellular
catalytic domain. The binding of the ligand, collagen,
to DDRs results in a slow but sustained receptor
activation. DDRs regulate cell adhesion, proliferation,
and extracellular matrix remodeling. They have been
linked to a variety of human cancers including breast,
colon, ovarian, brain, and lung. There is no evidence
showing that DDRs act as transforming oncogenes. They
are more likely to play a role in the regulation of
tumor growth and metastasis.
Length = 295
Score = 48.4 bits (115), Expect = 7e-06
Identities = 55/231 (23%), Positives = 93/231 (40%), Gaps = 49/231 (21%)
Query: 19 IKRFIQQGNFGDIYLVE-------------EKQSHNTFVMKKVLREKMPNTIERD----- 60
+K + +G FG+++L E E V K+LR + T D
Sbjct: 9 LKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEI 68
Query: 61 -IMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDF------------VTLLENQPHGYL 107
IM + K P I+ L + + I EY+ GD T N P +
Sbjct: 69 KIMSRLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPS--V 126
Query: 108 SESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNG--R 165
S + + ++A ++YL L +VHRD+ N L+ +K+ DFG + + R
Sbjct: 127 SIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYR 186
Query: 166 I--KSIVPVGTPEYVAPEVLEWMEGNHGSDG-YTGSCDLWSIGVVSYELLT 213
I ++++P+ WM G +T + D+W+ GV +E+ T
Sbjct: 187 IQGRAVLPI-----------RWMAWESILLGKFTTASDVWAFGVTLWEMFT 226
>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor alpha.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) alpha; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
alpha is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR alpha forms homodimers or heterodimers
with PDGFR beta, depending on the nature of the PDGF
ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
alpha signaling is important in the formation of lung
alveoli, intestinal villi, mesenchymal dermis, and hair
follicles, as well as in the development of
oligodendrocytes, retinal astrocytes, neural crest
cells, and testicular cells. Aberrant PDGFR alpha
expression is associated with some human cancers.
Mutations in PDGFR alpha have been found within a subset
of gastrointestinal stromal tumors (GISTs). An active
fusion protein FIP1L1-PDGFR alpha, derived from
interstitial deletion, is associated with idiopathic
hypereosinophilic syndrome (HES) and chronic
eosinophilic leukemia (CEL).
Length = 400
Score = 48.9 bits (116), Expect = 8e-06
Identities = 34/118 (28%), Positives = 64/118 (54%), Gaps = 15/118 (12%)
Query: 115 YIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV--DKN--GRIKSIV 170
+ Y++A+ +++L VHRD+ N+LL+ +K+ DFG A + D N + + +
Sbjct: 242 FTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFL 301
Query: 171 PVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPFNYETLDMTY 227
PV +++APE + + YT D+WS G++ +E+ + G TP+ +D T+
Sbjct: 302 PV---KWMAPESI-------FDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIVDSTF 349
>gnl|CDD|226699 COG4248, COG4248, Uncharacterized protein with protein kinase and
helix-hairpin-helix DNA-binding domains [General
function prediction only].
Length = 637
Score = 48.8 bits (116), Expect = 8e-06
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEY 177
LA A LH G+V D+ ++ L+S + L D S Q++ NG + + PVG E+
Sbjct: 125 NLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSDS-FQINANGTL-HLCPVGVSEF 182
Query: 178 VAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGST-PF 218
PE+ T + D + + V+ + LL G P+
Sbjct: 183 TPPELQTLPSFVGF--ERTANHDNFGLAVLIFHLLFGGRHPY 222
Score = 31.1 bits (70), Expect = 2.9
Identities = 29/137 (21%), Positives = 50/137 (36%), Gaps = 8/137 (5%)
Query: 346 LPPSSEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLL 405
L P+ + +R LQQ+A + SL L C V L +
Sbjct: 372 LQPTGRPLPLGRR-EYIHLQQIALSALSL--LLCGLQAEPRYIILVPVLAAIWIIGSLTS 428
Query: 406 SKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCE 465
+ + E+ + R+ + + D LVA + + + ++ LEK D L + E
Sbjct: 429 KRYKAELQQRREAFNRAKMDY----DHLVAQIQQRGGLEGFIAKRAMLEKMKDEILGLPE 484
Query: 466 VSK-ELEVLRGELEEQK 481
K L L E++
Sbjct: 485 EEKRALAALHDTARERQ 501
>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine
Kinases, Met and Ron. Protein Tyrosine Kinase (PTK)
family; Met and Ron; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Met and
Ron are receptor tyr kinases (RTKs) composed of an
alpha-beta heterodimer. The extracellular alpha chain is
disulfide linked to the beta chain, which contains an
extracellular ligand-binding region with a sema domain,
a PSI domain and four IPT repeats, a transmembrane
segment, and an intracellular catalytic domain. Binding
to their ligands leads to receptor dimerization,
autophosphorylation, activation, and intracellular
signaling. Met binds to the ligand, hepatocyte growth
factor/scatter factor (HGF/SF), and is also called the
HGF receptor. HGF/Met signaling plays a role in growth,
transformation, cell motility, invasion, metastasis,
angiogenesis, wound healing, and tissue regeneration.
Aberrant expression of Met through mutations or gene
amplification is associated with many human cancers
including hereditary papillary renal and gastric
carcinomas. The ligand for Ron is macrophage stimulating
protein (MSP). Ron signaling is important in regulating
cell motility, adhesion, proliferation, and apoptosis.
Aberrant Ron expression is implicated in tumorigenesis
and metastasis.
Length = 262
Score = 47.9 bits (114), Expect = 9e-06
Identities = 34/117 (29%), Positives = 65/117 (55%), Gaps = 18/117 (15%)
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV-DK-----NGRIKSIVP 171
++A+ ++YL +VHRD+ N +L + +K+ DFG A + DK + + +P
Sbjct: 106 QVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLP 165
Query: 172 VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF-NYETLDMT 226
V +++A E L+ + +T D+WS GV+ +EL+T G+ P+ + ++ D+T
Sbjct: 166 V---KWMALESLQ-------TQKFTTKSDVWSFGVLLWELMTRGAPPYPDVDSFDIT 212
>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein,
HlyD family. Type I secretion is an ABC transport
process that exports proteins, without cleavage of any
signal sequence, from the cytosol to extracellular
medium across both inner and outer membranes. The
secretion signal is found in the C-terminus of the
transported protein. This model represents the adaptor
protein between the ATP-binding cassette (ABC) protein
of the inner membrane and the outer membrane protein,
and is called the membrane fusion protein. This model
selects a subfamily closely related to HlyD; it is
defined narrowly and excludes, for example, colicin V
secretion protein CvaA and multidrug efflux proteins
[Protein fate, Protein and peptide secretion and
trafficking].
Length = 423
Score = 48.5 bits (116), Expect = 9e-06
Identities = 45/232 (19%), Positives = 91/232 (39%), Gaps = 52/232 (22%)
Query: 423 ESDLVATSSDLVATRHELEEVRSELKEKENLEKTDD-RKLEVCEVSKELEVLRGELEEQK 481
E+D S ++ E+ +R+E + +E DD E V + ++ + E +K
Sbjct: 80 EADAAELESQVLRLEAEVARLRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSLFESRK 139
Query: 482 TATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLD 541
+ ++ + +A++KQ + E L+ +L +L Q+L+V E
Sbjct: 140 ST--------LRA--QLELILAQIKQLEAELAGLQAQLQALRQQLEVISE---------- 179
Query: 542 SKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRG 601
+E+ +K E+ V R LLEL+ + + E+
Sbjct: 180 -----------ELEARRKLKEKGLVS--------------RLELLELERERAEAQGELGR 214
Query: 602 YKLDLESTRRELE------TNKDQTIELRAKSKLEKAEGELTTVREENKKLK 647
+ +LE +R+++ +QT +L +A+ L +RE K +
Sbjct: 215 LEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQARLAELRERLNKAR 266
Score = 46.2 bits (110), Expect = 5e-05
Identities = 22/95 (23%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 357 KRDRLQLLQQLAEAKASLEDLS-CSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRL 415
R +L+++ + EA+ L++ SR +L L+ + + Q +L + L + +ID L
Sbjct: 170 LRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEAELEVLKRQIDEL 229
Query: 416 RQEMVKKESDLVATSSD-LVATRHELEEVRSELKE 449
+ E + E + L + L E+R L +
Sbjct: 230 QLERQQIEQTFREEVLEELTEAQARLAELRERLNK 264
Score = 43.8 bits (104), Expect = 2e-04
Identities = 38/181 (20%), Positives = 76/181 (41%), Gaps = 20/181 (11%)
Query: 364 LQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKE 423
L+ A+++A++E + ++ QQ L S S +++ + ++ + E
Sbjct: 100 LRAEADSQAAIEFPDDLLSAEDPAVPELIKGQQSL--FESRKSTLRAQLELILAQIKQLE 157
Query: 424 SDLVATSSDLVATRHELEEVRSELKEKENLEK--------TDDRKLEVCEVSKELEVLRG 475
++L + L A R +LE + EL+ + L++ + + E E EL L
Sbjct: 158 AELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGELGRLEA 217
Query: 476 ELEEQKTATKQWKKDWYQSVKE--RNAAVAELKQAQTENEALKEKLTSLEQELKVSEEAL 533
ELE K + + + Q +++ R + EL +AQ L L + L + + L
Sbjct: 218 ELEVLKRQIDELQLE-RQQIEQTFREEVLEELTEAQAR-------LAELRERLNKARDRL 269
Query: 534 A 534
Sbjct: 270 Q 270
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 48.5 bits (115), Expect = 1e-05
Identities = 59/313 (18%), Positives = 126/313 (40%), Gaps = 20/313 (6%)
Query: 338 TNTSSDSTLPPSSEDMRHWKRDRLQLLQQLAEA-KASLEDLSCSRTRVLALQAQVSSLQQ 396
T+T++D+ L + + +R +L +Q + E+ + L+ +V +LQ
Sbjct: 427 TDTNTDTALEKLEKALAEKERIIERLKEQRDRDERYEQEEFETYKKEFEDLKEEVQNLQL 486
Query: 397 DLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKT 456
L+ L +EE+ +L +K+ SDL +L R + E++ ELK ++
Sbjct: 487 KLSERELQLELLKEEVSKLASNQLKQRSDLERAHIELEKIREKHEKLEKELKRLRANPES 546
Query: 457 DDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALK 516
DR V R + + + L++A+ E + +
Sbjct: 547 ADR---GSAVDAGTSRSRADSAGARNEVDRLLD--------------RLEKAEQERDDTE 589
Query: 517 EKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISE 576
+ L +EL+ ++ L Q ++ E + S + + +E+S + ++
Sbjct: 590 MEAGRLAKELEKAQRHLTKQQEKTEATRIEFERKSAELLEEAERLEKSEAEEETLRQSTQ 649
Query: 577 KYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGEL 636
++ ++LE +++ + + E +LE ++ +E + +L AE E
Sbjct: 650 IGHAQAAAHNHIEHHVQKLESDLKQLRAEREQLVAQLEKSQQSLMEFQQ--ELNAAEAER 707
Query: 637 TTVREENKKLKQG 649
EEN++LKQ
Sbjct: 708 RKHLEENRELKQE 720
Score = 43.5 bits (102), Expect = 4e-04
Identities = 64/382 (16%), Positives = 143/382 (37%), Gaps = 54/382 (14%)
Query: 383 RVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEE 442
+ A Q + ++ ++ K E ++ L++++ + L + L
Sbjct: 365 SLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFRRKERRLKEEKERLRS 424
Query: 443 VRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAV 502
++++ LEK + + E E + L+EQ+ ++++++
Sbjct: 425 LQTDTNTDTALEKLE-------KALAEKERIIERLKEQRDRDERYEQE------------ 465
Query: 503 AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEME 562
E + + E E LKE++ +L+ +L E L + + + +E E+E
Sbjct: 466 -EFETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVSKLASNQLKQRSDLERAHIELE 524
Query: 563 QSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIE 622
+ EK K ELK + E RG +D ++R ++ +
Sbjct: 525 K-------------IREKHEKLEKELKRLRANPESADRGSAVDAGTSRSRADSAGARNEV 571
Query: 623 LRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQS---------------- 666
R +LEKAE E E +L + + L K + ++
Sbjct: 572 DRLLDRLEKAEQERDDTEMEAGRLAKELEKAQRHLTKQQEKTEATRIEFERKSAELLEEA 631
Query: 667 -KLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLR 725
+LEK+E E T+R+ + +++ S L+ L++ + ++L
Sbjct: 632 ERLEKSEAEEETLRQSTQIGHAQA----AAHNHIEHHVQKLESDLKQLRAEREQLVAQLE 687
Query: 726 SANEIIGEYETKITALESTMTR 747
+ + + E++ ++ A E+ +
Sbjct: 688 KSQQSLMEFQQELNAAEAERRK 709
Score = 42.3 bits (99), Expect = 0.001
Identities = 74/349 (21%), Positives = 143/349 (40%), Gaps = 43/349 (12%)
Query: 368 AEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLV 427
AE + +L R + LQ ++ LQQ L ++EEI +L + + K
Sbjct: 121 AERERQAMELFLLRDTLEKLQLRMERLQQT-------LDARDEEIKKLLEMLQSKGLSAK 173
Query: 428 ATSSDLVATR---------HELEEVRSELKEKENLEKTDD--RKLEVCEVSKELEVLRGE 476
A D LE + + KEKE++ ++ +KL++ + E +
Sbjct: 174 AEEEDSERLGRIREAEDQQSHLEVLLEQ-KEKEHMMLREEIHQKLQMERDDAKTEASQKL 232
Query: 477 LEEQKTATKQWKKDWYQ--------------SVKERNAAVAELKQAQTENEALKEKLTSL 522
++E+ T K+++K + S +RN E++ ++ A+K K
Sbjct: 233 IDEKDTKIKEFEKMLEKAENEIYRLQSRCDTSEADRNRLDKEVEAERSALAAMKAKCDRA 292
Query: 523 EQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISE--KYEK 580
QEL + L Q L++ + + ++ +++++ ++ + + +YE
Sbjct: 293 AQELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAILQTEVDALRYEL 352
Query: 581 DRK-TLLELKSAK-ERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTT 638
+RK L K+A + + E Y ++E R E + + L+ +K E T
Sbjct: 353 ERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQ-----KKIENLQET 407
Query: 639 VREENKKLKQGKIRL-VYSLFKDPQPAQSKLEKAEGELTTVREENKKLK 686
R + ++LK+ K RL + A KLEKA E + E K+ +
Sbjct: 408 FRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQR 456
Score = 41.2 bits (96), Expect = 0.002
Identities = 66/278 (23%), Positives = 102/278 (36%), Gaps = 45/278 (16%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVC 464
L K E EI RL+ E+D E+E RS L + K D E+
Sbjct: 247 LEKAENEIYRLQSRCDTSEADRNRLDK-------EVEAERSALAAMKA--KCDRAAQELS 297
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
EL L+ ELE + +KE +L +A+ E L+ ++ +L
Sbjct: 298 RKKTELLGLQTELET-LANQDSDMRQHLDKLKE------DLTRAEQEKAILQTEVDALRY 350
Query: 525 ELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSG-ISEKYEKDRK 583
EL+ L SL + E + IE M+ E++ ++R + I E R+
Sbjct: 351 ELERKHNTLTKKTASLQAAQEEKATYAGEIEDMRDRYEKTERKLRVLQKKIENLQETFRR 410
Query: 584 TLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREEN 643
LK KERL + + T A KLEKA E + E
Sbjct: 411 KERRLKEEKERLR------------------SLQTDTNTDTALEKLEKALAEKERIIERL 452
Query: 644 KKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREE 681
K+ + +D + Q + E + E ++EE
Sbjct: 453 KEQRD----------RDERYEQEEFETYKKEFEDLKEE 480
Score = 41.2 bits (96), Expect = 0.003
Identities = 61/270 (22%), Positives = 117/270 (43%), Gaps = 18/270 (6%)
Query: 377 LSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVAT 436
L+ + + ++S + +L + L + +RQ + K + DL +
Sbjct: 282 LAAMKAKCDRAAQELSRKKTELLGLQTELETLANQDSDMRQHLDKLKEDLTRAEQEKAIL 341
Query: 437 RHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVK 496
+ E++ +R EL+ K N L+ +E GE+E+ +D Y+
Sbjct: 342 QTEVDALRYELERKHNTLTKKTASLQ--AAQEEKATYAGEIED--------MRDRYE-KT 390
Query: 497 ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIES 556
ER +L+ Q + E L+E E+ LK +E L + Q ++ + E
Sbjct: 391 ER-----KLRVLQKKIENLQETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEK 445
Query: 557 MQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETN 616
+ R R+ E++E +K +LK + L+L++ +L LE + E+
Sbjct: 446 ERIIERLKEQRDRDERYEQEEFETYKKEFEDLKEEVQNLQLKLSERELQLELLKEEVS-- 503
Query: 617 KDQTIELRAKSKLEKAEGELTTVREENKKL 646
K + +L+ +S LE+A EL +RE+++KL
Sbjct: 504 KLASNQLKQRSDLERAHIELEKIREKHEKL 533
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 46.6 bits (111), Expect = 2e-05
Identities = 44/183 (24%), Positives = 83/183 (45%), Gaps = 4/183 (2%)
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
++ L E + + K+ +K ++ E A L+ + E E L+ +++ LE E++
Sbjct: 10 LAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQ 69
Query: 528 VSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE 587
E + A+ L + E + + IE +Q E+ E++ + E+ EK K + +
Sbjct: 70 EIRERIKRAEEKLSAVKDERELRALNIE-IQIAKERINSLEDELAELMEEIEKLEKEIED 128
Query: 588 LKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKL-EKAEGELTTVREENKKL 646
LK ERLE + + LE E ++ + +L EK + EL + E +K
Sbjct: 129 LKERLERLEKNLAEAEARLEE--EVAEIREEGQELSSKREELKEKLDPELLSEYERIRKN 186
Query: 647 KQG 649
K+G
Sbjct: 187 KKG 189
Score = 43.9 bits (104), Expect = 1e-04
Identities = 38/183 (20%), Positives = 79/183 (43%), Gaps = 11/183 (6%)
Query: 404 LLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEV 463
+ K + E DRL + + L ++L A LE + EL++ EN + E+
Sbjct: 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVS--QLESEI 68
Query: 464 CEVSKELEVLRGELEEQKTAT--KQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTS 521
E+ + ++ +L K + + + + N+ EL + E E L++++
Sbjct: 69 QEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIED 128
Query: 522 LEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREM-SGISEKYEK 580
L++ L+ E+ LA A+ L+ ++ E E Q+ + ++ + +YE+
Sbjct: 129 LKERLERLEKNLAEAEARLEEEVAE------IREEGQELSSKREELKEKLDPELLSEYER 182
Query: 581 DRK 583
RK
Sbjct: 183 IRK 185
Score = 32.3 bits (74), Expect = 0.70
Identities = 35/160 (21%), Positives = 73/160 (45%), Gaps = 20/160 (12%)
Query: 367 LAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDL 426
L +AKA LE L + AL+ ++ L+ ++ S + + E I R +++
Sbjct: 33 LKKAKAELEAL---NKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL-----SA 84
Query: 427 VATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQ 486
V +L A E++ + + E+ E+ E+ +E+E L E+E+ K ++
Sbjct: 85 VKDERELRALNIEIQIAKERINSLED---------ELAELMEEIEKLEKEIEDLKERLER 135
Query: 487 WKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
+K+ ++ VAE+++ + L K L+++L
Sbjct: 136 LEKNLAEAEARLEEEVAEIREEG---QELSSKREELKEKL 172
Score = 31.6 bits (72), Expect = 1.3
Identities = 20/121 (16%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 351 EDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEE 410
ED+ + +Q++ E E+ + + ++ +L ++ ++ E+
Sbjct: 55 EDLENQVSQLESEIQEIRERIKRAEEKLSAVKD----ERELRALNIEIQIAKERINSLED 110
Query: 411 EIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKEL 470
E+ L +E+ K E ++ L L E + L+E+ + + + E+ +EL
Sbjct: 111 ELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEE--VAEIREEGQELSSKREEL 168
Query: 471 E 471
+
Sbjct: 169 K 169
Score = 29.6 bits (67), Expect = 5.9
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 25/111 (22%)
Query: 576 EKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGE 635
+ E K L L+ E LE +V + +++ R ++ + E+
Sbjct: 38 AELEALNKALEALEIELEDLENQVSQLESEIQEIRERIK-------------RAEEKLSA 84
Query: 636 LTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLK 686
+ RE L + Q A+ ++ E EL + EE +KL+
Sbjct: 85 VKDERELRA------------LNIEIQIAKERINSLEDELAELMEEIEKLE 123
>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine
Kinase, Platelet Derived Growth Factor Receptor beta.
Protein Tyrosine Kinase (PTK) family; Platelet Derived
Growth Factor Receptor (PDGFR) beta; catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. PDGFR
beta is a receptor tyr kinase (RTK) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding to
its ligands, the PDGFs, leads to receptor dimerization,
trans phosphorylation and activation, and intracellular
signaling. PDGFR beta forms homodimers or heterodimers
with PDGFR alpha, depending on the nature of the PDGF
ligand. PDGF-BB and PDGF-DD induce PDGFR beta
homodimerization. PDGFR signaling plays many roles in
normal embryonic development and adult physiology. PDGFR
beta signaling leads to a variety of cellular effects
including the stimulation of cell growth and chemotaxis,
as well as the inhibition of apoptosis and GAP
junctional communication. It is critical in normal
angiogenesis as it is involved in the recruitment of
pericytes and smooth muscle cells essential for vessel
stability. Aberrant PDGFR beta expression is associated
with some human cancers. The continuously-active fusion
proteins of PDGFR beta with COL1A1 and TEL are
associated with dermatofibrosarcoma protuberans (DFSP)
and a subset of chronic myelomonocytic leukemia (CMML),
respectively.
Length = 401
Score = 47.7 bits (113), Expect = 2e-05
Identities = 35/129 (27%), Positives = 62/129 (48%), Gaps = 11/129 (8%)
Query: 92 GGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKL 151
TL+ P LS + Y++A +++L VHRD+ N+L+ +K+
Sbjct: 223 RTRRDTLINESP--ALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKI 280
Query: 152 TDFGSATQVDKNGRIKSIVPVGTP-EYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYE 210
DFG A + ++ S P +++APE + ++ YT D+WS G++ +E
Sbjct: 281 CDFGLARDIMRDSNYISKGSTFLPLKWMAPESI-------FNNLYTTLSDVWSFGILLWE 333
Query: 211 LLT-GSTPF 218
+ T G TP+
Sbjct: 334 IFTLGGTPY 342
>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase,
Axl. Protein Tyrosine Kinase (PTK) family; Axl;
catalytic (c) domain. The PTKc family is part of a
larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl is a member of the
Axl subfamily, which is composed of receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with two immunoglobulin-like domains followed by two
fibronectin type III repeats, a transmembrane segment,
and an intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl is widely expressed in a
variety of organs and cells including epithelial,
mesenchymal, hematopoietic, as well as non-transformed
cells. Axl signaling is important in many cellular
functions such as survival, anti-apoptosis,
proliferation, migration, and adhesion. Axl was
originally isolated from patients with chronic
myelogenous leukemia and a chronic myeloproliferative
disorder. Axl is overexpressed in many human cancers
including colon, squamous cell, thyroid, breast, and
lung carcinomas.
Length = 272
Score = 46.9 bits (111), Expect = 2e-05
Identities = 38/144 (26%), Positives = 70/144 (48%), Gaps = 23/144 (15%)
Query: 86 IMEYVTGGDFVTLL-----ENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
I+ ++ GD + L + P YL ++ ++A ++YL ++HRD+ N
Sbjct: 84 ILPFMKHGDLHSFLLYSRLGDCPQ-YLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARN 142
Query: 141 MLLSATGHLKLTDFGSATQV-----DKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGY 195
+L+ ++ + DFG + ++ + GRI + +PV +++A E L Y
Sbjct: 143 CMLNENMNVCVADFGLSKKIYNGDYYRQGRI-AKMPV---KWIAIESL-------ADRVY 191
Query: 196 TGSCDLWSIGVVSYELLT-GSTPF 218
T D+WS GV +E+ T G TP+
Sbjct: 192 TTKSDVWSFGVTMWEIATRGQTPY 215
>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase,
Spleen tyrosine kinase. Protein Tyrosine Kinase (PTK)
family; Spleen tyrosine kinase (Syk); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Syk,
together with Zap-70, form the Syk subfamily of kinases
which are cytoplasmic (or nonreceptor) tyr kinases
containing two Src homology 2 (SH2) domains N-terminal
to the catalytic tyr kinase domain. Syk was first cloned
from the spleen, and its function in hematopoietic cells
is well-established. Syk is involved in the signaling
downstream of activated receptors (including B-cell and
Fc receptors) that contain ITAMs (immunoreceptor tyr
activation motifs), leading to processes such as cell
proliferation, differentiation, survival, adhesion,
migration, and phagocytosis. More recently, Syk
expression has been detected in other cell types
(including epithelial cells, vascular endothelial cells,
neurons, hepatocytes, and melanocytes), suggesting a
variety of biological functions in non-immune cells. Syk
plays a critical role in maintaining vascular integrity
and in wound healing during embryogenesis. It also
regulates Vav3, which is important in osteoclast
function including bone development. In breast
epithelial cells, where Syk acts as a negative regulator
for epidermal growth factor receptor (EGFR) signaling,
loss of Syk expression is associated with abnormal
proliferation during cancer development suggesting a
potential role as a tumor suppressor. In mice, Syk has
been shown to inhibit malignant transformation of
mammary epithelial cells induced with murine mammary
tumor virus (MMTV).
Length = 257
Score = 46.5 bits (110), Expect = 2e-05
Identities = 51/208 (24%), Positives = 94/208 (45%), Gaps = 29/208 (13%)
Query: 26 GNFGDIY--LVEEKQSHNTFVMKKVLREKMPNTIERD-------IMVKSKCPYIVNLFYS 76
GNFG + + + K+S T V K+L+ + +D +M + PYIV +
Sbjct: 6 GNFGTVKKGMYKMKKSEKT-VAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMI-G 63
Query: 77 FQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDI 136
+ +ME G L+ H ++E +++++ ++YL +VHRD+
Sbjct: 64 ICEAESWMLVMELAELGPLNKFLQKNKH--VTEKNITELVHQVSMGMKYLEETNFVHRDL 121
Query: 137 KPDNMLLSATGHLKLTDFG--SATQVDKN---GRIKSIVPVGTPEYVAPEVLEWMEGNHG 191
N+LL + K++DFG A D+N + PV ++ APE + + +
Sbjct: 122 AARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPV---KWYAPECMNYYK---- 174
Query: 192 SDGYTGSCDLWSIGVVSYELLT-GSTPF 218
++ D+WS GV+ +E + G P+
Sbjct: 175 ---FSSKSDVWSFGVLMWEAFSYGQKPY 199
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 47.7 bits (113), Expect = 2e-05
Identities = 56/395 (14%), Positives = 116/395 (29%), Gaps = 34/395 (8%)
Query: 351 EDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEE 410
+ + ++ + L Q+L L+ L + + + LQ L ++
Sbjct: 379 QHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAHAKKQQELQQR 438
Query: 411 EIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKEL 470
+ + L + L+E +L+ KE + + RK V
Sbjct: 439 YAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHLQETRKKAVVLARLL- 497
Query: 471 EVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSE 530
EL+E+ + +Q L ++ EQ E
Sbjct: 498 -----ELQEEP-----------CPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLE 541
Query: 531 EALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKS 590
+ + L S+ ++ +L ++ +Q+ + L +L
Sbjct: 542 TSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTE 601
Query: 591 AKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSK--------LEKAEGELTTVREE 642
E + + L + + +D + L+ S+ L + LT R
Sbjct: 602 KLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVR 661
Query: 643 NKKL--KQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFW 700
L + L+ S Q QS+ E+ + + L+ E + F
Sbjct: 662 EHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHIEEYDREFN 721
Query: 701 LDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYE 735
N S DL ++ + N+ + E
Sbjct: 722 EIENASSSLGSDL-------AAREDALNQSLKELM 749
Score = 40.0 bits (93), Expect = 0.006
Identities = 42/285 (14%), Positives = 99/285 (34%), Gaps = 22/285 (7%)
Query: 404 LLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKEN--------LEK 455
LL+ + + + M + + L E + ++ E+
Sbjct: 198 LLTLRSQLLTLCTPCMPDTYHERKQVLEKELK---HLREALQQTQQSHAYLTQKREAQEE 254
Query: 456 TDDRKLEVCEVSKELEVLRGE---LEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTEN 512
++ + ++ +E LR + LEE + + +K A +QAQ +
Sbjct: 255 QLKKQQLLKQLRARIEELRAQEAVLEETQERINRARK-AAPLAAHIKAVTQIEQQAQRIH 313
Query: 513 EALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMS 572
L+ K+ S + L + + + E + L T+ S + + + +
Sbjct: 314 TELQSKMRSRAKLLMKRAAHVKQQSS-----IEEQRRLLQTLHSQEIHIRDAHEVATSIR 368
Query: 573 GISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRA-KSKLEK 631
IS + + + L+ K L +++ +L+ +RE T +T R + +L
Sbjct: 369 EISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQGQLAH 428
Query: 632 AEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELT 676
A+ + +++ +L I K + + ++ E
Sbjct: 429 AKKQQ-ELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKERE 472
Score = 38.0 bits (88), Expect = 0.025
Identities = 66/463 (14%), Positives = 135/463 (29%), Gaps = 46/463 (9%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVK 421
Q+ QQ L+ SR ++L +A Q + LL + +R
Sbjct: 304 QIEQQAQRIHTELQSKMRSRAKLLMKRAAHVKQQSSIEEQRRLLQTLHSQEIHIRDAHEV 363
Query: 422 KESDLVATSSDLVATRH--ELEEVRSELKEKENL--EKTDDRKLEVCEVSKELE---VLR 474
S + T+H L++ ++ L +K ++ D + E + L+
Sbjct: 364 ATSIREISCQQHTLTQHIHTLQQQKTTLTQKLQSLCKELDILQREQATIDTRTSAFRDLQ 423
Query: 475 GELEEQKTATKQWKKDW----------YQSVKERNAAVAELKQA---QTENEALKEKLTS 521
G+L K + ++ Q K + E Q+ + + KE++
Sbjct: 424 GQLAHAKKQQELQQRYAELCAAAITCTAQCEKLEKIHLQESAQSLKEREQQLQTKEQIHL 483
Query: 522 LEQELKVSEEALATAQNSLDSKLRE-------HQALSNTIESMQKEMEQSAVRVREMSGI 574
E K A L + + + + M++ ++
Sbjct: 484 QETRKKAVVLARLLELQEEPCPLCGSCIHPNPARQDIDNPGPLTRRMQRGEQTYAQLETS 543
Query: 575 SEKYEKDRKTLLE-LKSAKERLELEVR----------GYKLDLESTRRELETNKDQTIEL 623
E + + S KE+++ + K D+ + + +D
Sbjct: 544 EEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQD---LT 600
Query: 624 RAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENK 683
S+ E + +Q + L + Q KL T+ +E
Sbjct: 601 EKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQE-- 658
Query: 684 KLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYETKITALES 743
+++ L ++ K T + L ++ E ET I E
Sbjct: 659 RVREHALSIRVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETHI--EEY 716
Query: 744 TMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDILSH 786
+E L D L+ ++L + +L
Sbjct: 717 DREFNE-IENASSSLGSDLAAREDALNQSLKELMHQARTVLKA 758
Score = 34.2 bits (78), Expect = 0.38
Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 18/207 (8%)
Query: 357 KRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLR 416
+ +LL A ++ T + AQ +L ++L +H EE DR
Sbjct: 668 RVLPKELLASRQLALQKMQSEKEQLTYWKEMLAQCQTLLRELETH-------IEEYDREF 720
Query: 417 QEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGE 476
E+ E+ + SDL A L + LKE + +T + + EV
Sbjct: 721 NEI---ENASSSLGSDLAAREDALNQS---LKELMHQARTVLKARTEAHFNNNEEVTAAL 774
Query: 477 LEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATA 536
+ + + + R LK + E + +++ S E L + E L
Sbjct: 775 QTGAELS--HLAAEIQFFNRLREEDTHLLKTLEAE---IGQEIPSDEDILNLQCETLVQE 829
Query: 537 QNSLDSKLREHQALSNTIESMQKEMEQ 563
+ S+L E A I + E+
Sbjct: 830 EEQFLSRLEEKSATLGEITHQLLKYEE 856
>gnl|CDD|173646 cd05087, PTKc_Aatyk1_Aatyk3, Catalytic domain of the Protein
Tyrosine Kinases, Apoptosis-associated tyrosine kinases
1 and 3. Protein Tyrosine Kinase (PTK) family;
Apoptosis-associated tyrosine kinase 1 (Aatyk1) and
Aatyk3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Aatyk1 and Aatyk3 are
members of the Aatyk subfamily of proteins. Aatyk3 is a
receptor kinase containing a transmembrane segment and a
long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk1 has a similar domain arrangement but
without the transmembrane segment and is thus, a
cytoplasmic (or nonreceptor) kinase. The expression of
Aatyk1 (also referred simply as Aatyk) is upregulated
during growth arrest and apoptosis in myeloid cells.
Aatyk1 has been implicated in neural differentiation,
and is a regulator of the Na-K-2Cl cotransporter, a
membrane protein involved in cell proliferation and
survival, epithelial transport, and blood pressure
control. The function of Aatyk3 is still unknown.
Length = 269
Score = 46.5 bits (110), Expect = 2e-05
Identities = 30/104 (28%), Positives = 54/104 (51%), Gaps = 2/104 (1%)
Query: 117 YELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTP- 175
E+A + +LH ++H D+ N LL+A +K+ D+G + K + + P
Sbjct: 107 CEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPL 166
Query: 176 EYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
++APE+++ + GN T ++WS+GV +EL GS P+
Sbjct: 167 RWIAPELVDEVHGNLLVVDQTKESNVWSLGVTIWELFELGSQPY 210
>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine
Kinase, Discoidin Domain Receptor 1. Protein Tyrosine
Kinase (PTK) family; mammalian Discoidin Domain Receptor
1 (DDR1) and homologs; catalytic (c) domain. The PTKc
family is part of a larger superfamily that includes the
catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. DDR1 is a
member of the DDR subfamily, which are receptor tyr
kinases (RTKs) containing an extracellular discoidin
homology domain, a transmembrane segment, an extended
juxtamembrane region, and an intracellular catalytic
domain. The binding of the ligand, collagen, to DDRs
results in a slow but sustained receptor activation.
DDR1 binds to all collagens tested to date (types I-IV).
It is widely expressed in many tissues. It is abundant
in the brain and is also found in keratinocytes, colonic
mucosa epithelium, lung epithelium, thyroid follicles,
and the islets of Langerhans. During embryonic
development, it is found in the developing
neuroectoderm. DDR1 is a key regulator of cell
morphogenesis, differentiation and proliferation. It is
important in the development of the mammary gland, the
vasculator and the kidney. DDR1 is also found in human
leukocytes, where it facilitates cell adhesion,
migration, maturation, and cytokine production.
Length = 304
Score = 46.5 bits (110), Expect = 3e-05
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 54/231 (23%)
Query: 25 QGNFGDIYLVE---------------EKQSHNTFVMKKVLREKMPNTIERD------IMV 63
+G FG+++L E ++ V K+LR D I+
Sbjct: 15 EGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILS 74
Query: 64 KSKCPYIVNLFYSFQDMNHVYFIMEYVTGGD---FVT---LLENQPHGYLSESKAR---- 113
+ K P I+ L D + + I EY+ GD F++ L + + +G + A
Sbjct: 75 RLKDPNIIRLLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPA 134
Query: 114 -------FYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNG-- 164
++A ++YL L +VHRD+ N L+ +K+ DFG + +
Sbjct: 135 ISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYY 194
Query: 165 RI--KSIVPVGTPEYVAPEVLEWMEGNHGSDG-YTGSCDLWSIGVVSYELL 212
RI ++++P+ WM G +T + D+W+ GV +E+L
Sbjct: 195 RIQGRAVLPI-----------RWMAWECILMGKFTTASDVWAFGVTLWEIL 234
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 46.9 bits (111), Expect = 3e-05
Identities = 66/371 (17%), Positives = 136/371 (36%), Gaps = 41/371 (11%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVK 421
L +++ EA + + R + AL++ + + + + + ++++L+ E+
Sbjct: 282 NLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIEL 341
Query: 422 KESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQK 481
KE ++ A L+ EL ++ L K + +++E E L EL++
Sbjct: 342 KEEEIKA-----------LQSNIDELHKQ--LRKQGISTEQFELMNQEREKLTRELDKIN 388
Query: 482 TATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLD 541
+ + K E L E + SL Q + S + N
Sbjct: 389 IQSDKLTKSVKSRKLEAQGIFKSL-------EKTLRQYDSLIQNITRSRSQIGHNVNDSS 441
Query: 542 SKLREHQA------LSNTIESMQKEM-EQSAVRVREMSGISEKYEKDRKTLLELKSAKER 594
K+ Q ++ +I+ E+ ++ R++ S E+D K LK
Sbjct: 442 LKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIK---NLKHDINE 498
Query: 595 LELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLV 654
L + +L+L + E +K++ ++E + E K+L +
Sbjct: 499 LTQILEKLELELSEANSKFELSKEENERELVAQRIEIEKLE--------KELNDLNLLSK 550
Query: 655 YSLFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLK 714
S+ Q QS K + + + K+ ++ S F + SSLEDL+
Sbjct: 551 TSILDAEQLVQSTEIKLDELKVDLNRKRYKIHKQVIHVIDITSKFKI---NIQSSLEDLE 607
Query: 715 SNYTERESKLR 725
+ + +LR
Sbjct: 608 NELGKVIEELR 618
Score = 35.3 bits (81), Expect = 0.12
Identities = 50/290 (17%), Positives = 105/290 (36%), Gaps = 31/290 (10%)
Query: 510 TENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQ-SAVRV 568
T+ LK + +L ++++ + + ++ +L K R ++ SN E+ M+Q S
Sbjct: 271 TDIANLKTQNDNLYEKIQEAMK-ISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWP 329
Query: 569 REMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIEL-RAKS 627
++ + + E + + L+S + L ++R + E + E + +L R
Sbjct: 330 GKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTE----QFELMNQEREKLTRELD 385
Query: 628 KLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKV 687
K+ +LT + K QG + + + + +T R +
Sbjct: 386 KINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQ-------YDSLIQNITRSRSQIGHNVN 438
Query: 688 SFFFTLESNSLFWLD---PNTFLSSLEDLKSNYTER-----------ESKLRSANEIIGE 733
+ LF + S+ +L ER E +++ I E
Sbjct: 439 DSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINE 498
Query: 734 YETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDI 783
+ LE ++ + S + E E I + E+L K+ ND+
Sbjct: 499 LTQILEKLELELSEANSKFELSKEENERELVAQRI---EIEKLEKELNDL 545
Score = 29.6 bits (66), Expect = 8.5
Identities = 28/167 (16%), Positives = 69/167 (41%), Gaps = 24/167 (14%)
Query: 448 KEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQ 507
+ NL+ +D E + + ++ L E+ A K + N +
Sbjct: 271 TDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALK----------SDSNKYENYVNA 320
Query: 508 AQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVR 567
+ +++ KL L+ E+++ EE + +AL + I+ + K++ + +
Sbjct: 321 MKQKSQEWPGKLEKLKSEIELKEEEI--------------KALQSNIDELHKQLRKQGIS 366
Query: 568 VREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELE 614
+ ++++ EK + L ++ ++L V+ KL+ + + LE
Sbjct: 367 TEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLE 413
>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to
tyrosine kinase). Protein Tyrosine Kinase (PTK) family;
Receptor related to tyrosine kinase (Ryk); pseudokinase
domain. The PTKc (catalytic domain) family to which this
subfamily belongs, is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ryk is a
receptor tyr kinase (RTK) containing an extracellular
region with two leucine-rich motifs, a transmembrane
segment, and an intracellular inactive pseudokinase
domain. The extracellular region of Ryk shows homology
to the N-terminal domain of Wnt inhibitory factor-1
(WIF) and serves as the ligand (Wnt) binding domain of
Ryk. Ryk is expressed in many different tissues both
during development and in adults, suggesting a
widespread function. It acts as a chemorepulsive axon
guidance receptor of Wnt glycoproteins and is
responsible for the establishment of axon tracts during
the development of the central nervous system. In
addition, studies in mice reveal that Ryk is essential
in skeletal, craniofacial, and cardiac development.
Thus, it appears Ryk is involved in signal transduction
despite its lack of kinase activity. Ryk may function as
an accessory protein that modulates the signals coming
from catalytically active partner RTKs such as the Eph
receptors.
Length = 280
Score = 45.9 bits (109), Expect = 4e-05
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 33/120 (27%)
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVD------------KNGR 165
++A + YLH G +H+DI N ++ +K+TD +A D +N
Sbjct: 125 QIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITD--NALSRDLFPMDYHCLGDNENRP 182
Query: 166 IKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPFNYETLD 224
+K ++A E L E + S D+WS GV+ +EL+T G TP Y +D
Sbjct: 183 VK---------WMALESLVNKEYSSAS-------DVWSFGVLLWELMTLGQTP--YVEID 224
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 46.6 bits (110), Expect = 5e-05
Identities = 50/280 (17%), Positives = 106/280 (37%), Gaps = 70/280 (25%)
Query: 426 LVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATK 485
L + +L + +L+++R +L+ EL +GE +T
Sbjct: 62 LFLLNRNLRSGVFQLDDIRPQLRALRT----------------ELGTAQGEKRAAET--- 102
Query: 486 QWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQ---NSLDS 542
ER AA +EL++A+ E EA++++L + Q L +++ LA L +
Sbjct: 103 -----------EREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQT 151
Query: 543 KLR-----------EHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSA 591
+L+ + Q+L + + +Q Q +V ++ S + E++ + L +A
Sbjct: 152 RLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEAQNLATRANA 211
Query: 592 KERLELEVRGYKLDLESTRRELET------NKDQTIELRAK------SKLEKAEGELTTV 639
+ E+ + T + ++ K Q I RA+ +L++ E +
Sbjct: 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARL 271
Query: 640 REENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVR 679
+E +L+ Q+ + + T R
Sbjct: 272 EQEVAQLEAY--------------YQAYVRLRQQAAATQR 297
Score = 43.1 bits (101), Expect = 5e-04
Identities = 49/242 (20%), Positives = 95/242 (39%), Gaps = 40/242 (16%)
Query: 363 LLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKK 422
L + + L RT E+ + E
Sbjct: 69 LRSGVFQLDDIRPQLRALRT----------------------------ELGTAQGEKRAA 100
Query: 423 ESDLVATSSDLVATRHELEEVRSELKE-KENLEKTDDRKLEVCEVSKELEVLRGELEEQK 481
E++ A S+L R E E VR EL ++NL K + + +++L+ L EQ+
Sbjct: 101 ETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQR 160
Query: 482 TATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLD 541
+ + S K+ A+ +LK ++ LK + +EQE + LAT N+
Sbjct: 161 RQLEAQAQSLQASQKQLQASATQLK---SQVLDLKLRSAQIEQEAQN----LATRANAAQ 213
Query: 542 SKLREHQALSNTIESMQKEMEQSAV----RVREMSGISEKYEKDRKTLLELKSAKERLEL 597
++ E + + + ++Q + ++++ +E+ + + L L++A+ RLE
Sbjct: 214 ARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQRLETAQARLEQ 273
Query: 598 EV 599
EV
Sbjct: 274 EV 275
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 45.8 bits (109), Expect = 8e-05
Identities = 42/183 (22%), Positives = 84/183 (45%), Gaps = 12/183 (6%)
Query: 354 RHWKRDRLQLLQQLAEAKASLED----LSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKE 409
H+ + +L++QL E E +L + + S + D+ +LL E
Sbjct: 274 AHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKENSEFKLDVEELKALLEALE 333
Query: 410 EEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKE-----KENLEKTDDRKLEVC 464
E +++ Q++ +K D +TS +L + +E + + +E+ EK D+ K E
Sbjct: 334 EILEKNLQKLEEKLKD-PSTSIELESITDLIESINDIIDAINELIREHNEKIDNLKKEKN 392
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
+ K+L + E K ++K+ K N+ E+KQ + E +AL++++ LE+
Sbjct: 393 KAKKKLW--LHLVAELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEK 450
Query: 525 ELK 527
+L
Sbjct: 451 QLT 453
Score = 29.6 bits (67), Expect = 8.5
Identities = 61/320 (19%), Positives = 119/320 (37%), Gaps = 51/320 (15%)
Query: 501 AVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKE 560
A++++ + E + L+EK+ LE E++ EE L A+N K + L+ +S E
Sbjct: 93 IEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKK--LAKKYDSNLSE 150
Query: 561 MEQSAVRVREMSGISEKYEKDRKTLLELKS----AKERLELEVRGYKLDLESTRRELETN 616
+ G++ K K L ELKS A L LE +L++ + L ++
Sbjct: 151 ---------ALKGLNYKKNFKEKLLKELKSVILNASSLLSLE------ELKAKIKTLFSS 195
Query: 617 KDQTIELRAKSKLEKAEGELTTVREENKKLKQGKI--RLVYSL----------------- 657
+ L S ++ E E + E++ L+ +L
Sbjct: 196 NKPELALLTLSVIDFDEIEQAEILEKSIIGSSDVPISELINNLGNSDWVKEGLEYHEEGD 255
Query: 658 ---FKDPQPAQSKLEKAEG----ELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSL 710
F + + + E E + E+ ++L + +E
Sbjct: 256 TCPFCQQTITEERKAELEAHFDEEYQELIEQLEELIDKYESHIEKALEELESILDTEKEN 315
Query: 711 EDLKSNYTERESKLRSANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILS 770
+ K + E ++ L + EI+ + K+ + S E+ + ++ NDI+
Sbjct: 316 SEFKLDVEELKALLEALEEILEKNLQKLEEKLKDPSTSI----ELESITDLIESINDIID 371
Query: 771 HDNEQLRKKNNDILSHDNEQ 790
NE +R+ N I + E+
Sbjct: 372 AINELIREHNEKIDNLKKEK 391
>gnl|CDD|214801 smart00750, KIND, kinase non-catalytic C-lobe domain. It is an
interaction domain identified as being similar to the
C-terminal protein kinase catalytic fold (C lobe). Its
presence at the N terminus of signalling proteins and
the absence of the active-site residues in the catalytic
and activation loops suggest that it folds independently
and is likely to be non-catalytic. The occurrence of
KIND only in metazoa implies that it has evolved from
the catalytic protein kinase domain into an interaction
domain possibly by keeping the substrate-binding
features.
Length = 176
Score = 43.5 bits (103), Expect = 9e-05
Identities = 32/103 (31%), Positives = 45/103 (43%), Gaps = 15/103 (14%)
Query: 119 LAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIKSIVPVGTPEYV 178
A +Q L L +HR K N+LL+ G LKL GS P ++
Sbjct: 20 WAVCLQCLGALRELHRQAKSGNILLTWDGLLKL--DGSVAFKTPEQSR------PDPYFM 71
Query: 179 APEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYE 221
APEV++ YT D++S+G+ YE L P+N E
Sbjct: 72 APEVIQGQS-------YTEKADIYSLGITLYEALDYELPYNEE 107
>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional.
Length = 467
Score = 45.3 bits (107), Expect = 1e-04
Identities = 39/141 (27%), Positives = 57/141 (40%), Gaps = 36/141 (25%)
Query: 104 HGYLSESKARFYIYELAQAVQYLHG-LGYVHRDIKPDNMLLSATG--------------- 147
HG S I++ A+ Y H L +H D+KP+N+L+ +
Sbjct: 225 HGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDP 284
Query: 148 -HLKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEV---LEWMEGNHGSDGYTGSCDLWS 203
+++ D G + R V T Y +PEV L WM S D+WS
Sbjct: 285 CRVRICDLGGCC----DERHSRTAIVSTRHYRSPEVVLGLGWMY----------STDMWS 330
Query: 204 IGVVSYELLTGSTPFNYETLD 224
+G + YEL TG Y+T D
Sbjct: 331 MGCIIYELYTGK--LLYDTHD 349
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 45.5 bits (107), Expect = 1e-04
Identities = 50/281 (17%), Positives = 117/281 (41%), Gaps = 10/281 (3%)
Query: 407 KKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEV 466
KK +E + + E KK++D + ++ E ++ E K+ + +K + + E
Sbjct: 1391 KKADEAKK-KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEA 1449
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
K+ E + E +K A + K D + E E K+ E + ++ +
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK 1509
Query: 527 KVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLL 586
K ++EA + + ++ + E+ + E ++ A +++ + + EK K
Sbjct: 1510 KKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEK--KKAE 1567
Query: 587 ELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKL 646
E K A+E + +R E ++ E ++ ++L + K KAE + E K+
Sbjct: 1568 EAKKAEEDKNMALR----KAEEAKKAEEARIEEVMKLYEEEKKMKAE---EAKKAEEAKI 1620
Query: 647 KQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKV 687
K +++ K + + K + + + +++ ++ K+
Sbjct: 1621 KAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKI 1661
Score = 42.1 bits (98), Expect = 0.001
Identities = 60/282 (21%), Positives = 113/282 (40%), Gaps = 25/282 (8%)
Query: 407 KKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRK----LE 462
K EE + +E +E + R + E ++ + L+K +++K +
Sbjct: 1237 KDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAK 1296
Query: 463 VCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSL 522
E K+ + + + EE K A + KK ++ K+ +AA + ++A+ EA K + +
Sbjct: 1297 KAEEKKKADEAKKKAEEAKKA-DEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAA 1355
Query: 523 EQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDR 582
E + +EE A+ + ++ A E +K E +K E+D+
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE-----------AKKKAEEDK 1404
Query: 583 KTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREE 642
K ELK A K + +++ E K + E + K++ K E EE
Sbjct: 1405 KKADELKKAAAA--------KKKADEAKKKAE-EKKKADEAKKKAEEAKKADEAKKKAEE 1455
Query: 643 NKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKK 684
KK ++ K + + D +++ K E EE KK
Sbjct: 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKK 1497
Score = 42.1 bits (98), Expect = 0.001
Identities = 48/220 (21%), Positives = 85/220 (38%), Gaps = 11/220 (5%)
Query: 437 RHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVK 496
+ E+ L++ E +K ++ ++E E E E +K + K + + +
Sbjct: 1570 KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
Query: 497 ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIES 556
E V +LK+ + E + E+L E+E K+ A K E E
Sbjct: 1630 EEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEE---AKKAEED 1686
Query: 557 MQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETN 616
+K E E ++K E+ +K E K E L+ K+ E ++E E +
Sbjct: 1687 EKKAAEALKKEAEE----AKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEED 1742
Query: 617 KDQTIELRA----KSKLEKAEGELTTVREENKKLKQGKIR 652
K + E + K K+ + E EE +K K+ I
Sbjct: 1743 KKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIE 1782
Score = 40.9 bits (95), Expect = 0.003
Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 19/250 (7%)
Query: 441 EEVRS--ELKEK-ENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKE 497
EE + E K+K E +K D+ K + E K+ + + + EE K A + K + + E
Sbjct: 1299 EEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADE 1358
Query: 498 RNAAVAELKQAQTENEALKEKLTSLE---QELKVSEEALATAQNSLDSKLREHQALSNTI 554
AA + + A+ + E K+K + + +E K ++EA A+ D K + +
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEE--DKKKADELKKAAAA 1416
Query: 555 ESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELE 614
+ E ++ A ++ +K E+ +K K A+E + E K + ++ +
Sbjct: 1417 KKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE---EAKKAD 1473
Query: 615 TNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGE 674
K + E + + +K E +E KK + K K A+ E + +
Sbjct: 1474 EAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAK--------KKADEAKKAEEAKKAD 1525
Query: 675 LTTVREENKK 684
EE KK
Sbjct: 1526 EAKKAEEAKK 1535
Score = 39.0 bits (90), Expect = 0.011
Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 17/252 (6%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDD-RKLEV 463
KK EE + E K A A + E + E K+ E +K D+ +K E
Sbjct: 1488 AKKKAEEAKKKADEAKKAAE---AKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAE- 1543
Query: 464 CEVSKELEVLRGE----LEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKL 519
E K E+ + E EE+K A + K + +++ R A E K+A+ KL
Sbjct: 1544 -EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAE--EAKKAEEARIEEVMKL 1600
Query: 520 TSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISE--- 576
E+++K E A +L++ + +E ++K+ + + E+ E
Sbjct: 1601 YEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENK 1660
Query: 577 -KYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGE 635
K ++ K E K E + K E+ ++E E K + EL+ K EK + E
Sbjct: 1661 IKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAK-KAEELKKKEAEEKKKAE 1719
Query: 636 LTTVREENKKLK 647
EE K+K
Sbjct: 1720 ELKKAEEENKIK 1731
Score = 33.6 bits (76), Expect = 0.55
Identities = 36/204 (17%), Positives = 89/204 (43%), Gaps = 9/204 (4%)
Query: 350 SEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQA-QVSSLQQDLTSHTSLLSKK 408
+E+ + + R++ + +L E + ++ + ++A ++ +++ L K+
Sbjct: 1583 AEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKE 1642
Query: 409 EEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSE--LKEKENLEKTDDRKLEVCEV 466
EE + E +KK + + A + E ++ ++E K +E+ +K + + E
Sbjct: 1643 AEEKK--KAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEE 1700
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
+K+ E L+ + E+K ++ KK + +E E K+ E++ E+ E+E
Sbjct: 1701 AKKAEELKKKEAEEKKKAEELKK----AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEK 1756
Query: 527 KVSEEALATAQNSLDSKLREHQAL 550
K + + +E +A+
Sbjct: 1757 KKIAHLKKEEEKKAEEIRKEKEAV 1780
Score = 30.9 bits (69), Expect = 4.1
Identities = 39/218 (17%), Positives = 81/218 (37%), Gaps = 6/218 (2%)
Query: 435 ATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQS 494
A R EE ++E K K + + E K+ E + EE+ + ++ +
Sbjct: 1204 AARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMA 1263
Query: 495 VKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEAL-ATAQNSLDSKLREHQALSNT 553
R A + ++A+ +E K + E K +EE A + ++
Sbjct: 1264 HFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Query: 554 IESMQKEMEQSAVRVREMSGISE-KYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRE 612
E +K+ + + + E +E + E ++A+E+ E + E +++
Sbjct: 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAA----EKKKEEAKKK 1379
Query: 613 LETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGK 650
+ K + E + + +K E +E KK K
Sbjct: 1380 ADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAK 1417
>gnl|CDD|133235 cd05104, PTKc_Kit, Catalytic domain of the Protein Tyrosine Kinase,
Kit. Protein Tyrosine Kinase (PTK) family; Kit (or
c-Kit); catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Kit is a member of the
Platelet Derived Growth Factor Receptor (PDGFR)
subfamily of proteins, which are receptor tyr kinases
(RTKs) containing an extracellular ligand-binding region
with five immunoglobulin-like domains, a transmembrane
segment, and an intracellular catalytic domain. The
binding of Kit to its ligand, the stem-cell factor
(SCF), leads to receptor dimerization, trans
phosphorylation and activation, and intracellular
signaling. Kit is important in the development of
melanocytes, germ cells, mast cells, hematopoietic stem
cells, the interstitial cells of Cajal, and the
pacemaker cells of the GI tract. Kit signaling is
involved in major cellular functions including cell
survival, proliferation, differentiation, adhesion, and
chemotaxis. Mutations in Kit, which result in
constitutive ligand-independent activation, are found in
human cancers such as gastrointestinal stromal tumor
(GIST) and testicular germ cell tumor (TGCT). The
aberrant expression of Kit and/or SCF is associated with
other tumor types such as systemic mastocytosis and
cancers of the breast, neurons, lung, prostate, colon,
and rectum. Although the structure of the human Kit
catalytic domain is known, it is excluded from this
specific alignment model because it contains a deletion
in its sequence.
Length = 375
Score = 44.9 bits (106), Expect = 1e-04
Identities = 32/108 (29%), Positives = 59/108 (54%), Gaps = 17/108 (15%)
Query: 117 YELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV--DKNGRIK--SIVPV 172
Y++A+ + +L +HRD+ N+LL+ K+ DFG A + D N +K + +PV
Sbjct: 221 YQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPV 280
Query: 173 GTPEYVAPE-VLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
+++APE + + YT D+WS G++ +E+ + GS+P+
Sbjct: 281 ---KWMAPESIFNCV--------YTFESDVWSYGILLWEIFSLGSSPY 317
>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine
Kinase, HER3. Protein Tyrosine Kinase (PTK) family;
HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. HER3 is a
member of the EGFR (HER, ErbB) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular EGF-related ligand-binding region, a
transmembrane helix, and a cytoplasmic region with a tyr
kinase domain and a regulatory C-terminal tail. Unlike
other tyr kinases, phosphorylation of the activation
loop of EGFR proteins is not critical to their
activation. Instead, they are activated by
ligand-induced dimerization, leading to the
phosphorylation of tyr residues in the C-terminal tail,
which serve as binding sites for downstream signaling
molecules. HER3 binds the neuregulin ligands, NRG1 and
NRG2. HER3 contains an impaired tyr kinase domain and
relies on its heterodimerization partners for activity
following ligand binding. The HER2-HER3 heterodimer
constitutes a high affinity co-receptor capable of
potent mitogenic signaling. HER3 participates in a
signaling pathway involved in the proliferation,
survival, adhesion, and motility of tumor cells.
Length = 279
Score = 44.6 bits (105), Expect = 1e-04
Identities = 31/130 (23%), Positives = 60/130 (46%), Gaps = 19/130 (14%)
Query: 97 TLLEN--QPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDF 154
+LL++ Q L + + ++A+ + YL VHR++ N+LL + +++ DF
Sbjct: 94 SLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADF 153
Query: 155 GSATQVDKNGRIKSIVPVGTPEYVAPEV---LEWM--EGNHGSDGYTGSCDLWSIGVVSY 209
G + ++ +Y E ++WM E YT D+WS GV +
Sbjct: 154 G----------VADLLYPDDKKYFYSEHKTPIKWMALESILFGR-YTHQSDVWSYGVTVW 202
Query: 210 ELLT-GSTPF 218
E+++ G+ P+
Sbjct: 203 EMMSYGAEPY 212
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 45.1 bits (107), Expect = 1e-04
Identities = 50/223 (22%), Positives = 81/223 (36%), Gaps = 41/223 (18%)
Query: 440 LEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERN 499
LE+V +L E + + K V E L EE++ K+ E
Sbjct: 361 LEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKE--------GTEEE 412
Query: 500 AAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQA----LSNTIE 555
E+ + + L+E + LE+E L +L E + L + +E
Sbjct: 413 ERR-EITVYEKRIKKLEETVERLEEENS-----------ELKRELEELKREIEKLESELE 460
Query: 556 SMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELET 615
++E+ + RE+ + E+ K L E K E LE R+ E
Sbjct: 461 RFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELE-------------RKLAEL 507
Query: 616 NKDQTIELRAK----SKLEKAEGELTTVREENKKLKQGKIRLV 654
K + +EL K +EK E EE +K+G + LV
Sbjct: 508 RKMRKLELSGKGTPVKVVEKLTLEAIEEAEEEYGIKEGDVILV 550
Score = 40.1 bits (94), Expect = 0.005
Identities = 35/174 (20%), Positives = 67/174 (38%), Gaps = 22/174 (12%)
Query: 515 LKEKLTSLEQELKVSEEALATAQNSLD--SKLREHQALSNTIESMQKEMEQSAVRVREMS 572
L E L+ +++E + E+ + + + + L T+E +++E + + E+
Sbjct: 390 LAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELK 449
Query: 573 GISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKA 632
EK E EL+ + + +VR D E R+ + + K ++E+
Sbjct: 450 REIEKLES------ELERFRREVRDKVR---KDREIRARDRRIERLEKELEEKKKRVEEL 500
Query: 633 EGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLK 686
E +L +R+ K GK V +EK E EE +K
Sbjct: 501 ERKLAELRKMRKLELSGKGTPV-----------KVVEKLTLEAIEEAEEEYGIK 543
Score = 36.2 bits (84), Expect = 0.064
Identities = 27/118 (22%), Positives = 53/118 (44%), Gaps = 14/118 (11%)
Query: 418 EMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDR-KLEVCEVSKELEVLRGE 476
VK+E E E+ K + LE+T +R + E E+ +ELE L+ E
Sbjct: 395 SKVKEEER---PREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKRE 451
Query: 477 LEEQKTATKQWKKDWYQSVKERNAAVA----------ELKQAQTENEALKEKLTSLEQ 524
+E+ ++ ++++++ V++ A EL++ + E L+ KL L +
Sbjct: 452 IEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELRK 509
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 43.9 bits (104), Expect = 2e-04
Identities = 55/261 (21%), Positives = 114/261 (43%), Gaps = 8/261 (3%)
Query: 430 SSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKK 489
S ++ ELE R +LKE +E+ +++ E+ + + EL R EL + ++ +
Sbjct: 1 SLAMLDKLDELELKRKQLKE--EIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQ 58
Query: 490 DWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQA 549
+ + E N V ELK+ + E A ++L +ELK S+ S RE +
Sbjct: 59 ELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIER 118
Query: 550 LSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLEST 609
L ++ E+ V+++ + ++ E D K LE + L+ E+ K
Sbjct: 119 LEKKQQTSVLTPEEERELVQKIKELRKELE-DAKKALEENEKLKELKAEIDELKKKAREI 177
Query: 610 RRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQ---GKIRLVYSLFKDPQPAQS 666
+++ ++ E ++ K E +R+E +L + + + L ++ + Q+
Sbjct: 178 HEKIQELANEAQEY--HEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQN 235
Query: 667 KLEKAEGELTTVREENKKLKV 687
+L + E ++ +R + K K
Sbjct: 236 ELRELEKKIKALRAKEKAAKR 256
Score = 34.7 bits (80), Expect = 0.17
Identities = 51/248 (20%), Positives = 117/248 (47%), Gaps = 9/248 (3%)
Query: 402 TSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEK--ENLEKTDDR 459
L ++ EE+ R E+ K+ S+L +L A EL E EL+E+ E E+ +
Sbjct: 15 RKQLKEEIEELKEKRDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQEL 74
Query: 460 KLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKL 519
K + E++ +L+ LR E E K + +S+K + L++ Q + E+
Sbjct: 75 KEKRDEINAKLQELRKEYRELKE-KRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEE 133
Query: 520 TSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYE 579
L Q++K + L A+ +L+ + + L I+ ++K+ + +++E++ +++Y
Sbjct: 134 RELVQKIKELRKELEDAKKALEENE-KLKELKAEIDELKKKAREIHEKIQELANEAQEYH 192
Query: 580 KDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTV 639
++ +++L + L E + ++++ ++ L +++L + E ++ +
Sbjct: 193 EE---MIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNL--QNELRELEKKIKAL 247
Query: 640 REENKKLK 647
R + K K
Sbjct: 248 RAKEKAAK 255
Score = 33.5 bits (77), Expect = 0.41
Identities = 44/238 (18%), Positives = 99/238 (41%), Gaps = 9/238 (3%)
Query: 360 RLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEM 419
R +L ++ +E ++L+ + ++ + ++ L +K +EI+ QE+
Sbjct: 29 RDELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQEL 88
Query: 420 VKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEV-CEVSKELEVLRGELE 478
K+ +L ++ ++ + E++ E ++T E E+ ++++ LR ELE
Sbjct: 89 RKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELE 148
Query: 479 EQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQN 538
+ K A ++ +K AE+ + + + + EK+ L E + E +
Sbjct: 149 DAKKALEENEK--------LKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFE 200
Query: 539 SLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLE 596
D +E L + K++++ R + + EK K L + A +R E
Sbjct: 201 EADELRKEADELHEEFVELSKKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRRE 258
>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine
Kinases, Apoptosis-associated tyrosine kinases. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase (Aatyk) subfamily; catalytic (c) domain.
The Aatyk subfamily is also referred to as the lemur
tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1
(Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Aatyk proteins are mostly receptor tyr kinases (RTKs)
containing a transmembrane segment and a long C-terminal
cytoplasmic tail with a catalytic domain. Aatyk1 does
not contain a transmembrane segment and is a cytoplasmic
(or nonreceptor) kinase. Aatyk proteins are classified
as tyr kinases based on overall sequence similarity and
the phylogenetic tree. However, analysis of catalytic
residues suggests that Aatyk proteins may be
multispecific kinases, functioning also as
serine/threonine kinases. They are involved in neural
differentiation, nerve growth factor (NGF) signaling,
apoptosis, and spermatogenesis.
Length = 269
Score = 43.7 bits (103), Expect = 2e-04
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRI----KSIVPVG 173
E+A + +LH ++H D+ N L+A +K+ D+G A + VP+
Sbjct: 108 EVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPL- 166
Query: 174 TPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGST 216
++APE++E + T ++WS+GV +EL T +
Sbjct: 167 --RWLAPELVEIRGQDLLPKDQTKKSNIWSLGVTMWELFTAAD 207
>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein
Tyrosine Kinases. Protein Tyrosine Kinase (PTK) family;
Axl subfamily; catalytic (c) domain. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). The Axl subfamily
consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and
similar proteins. PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Axl subfamily members
are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with two
immunoglobulin-like domains followed by two fibronectin
type III repeats, a transmembrane segment, and an
intracellular catalytic domain. Binding to their
ligands, Gas6 and protein S, leads to receptor
dimerization, autophosphorylation, activation, and
intracellular signaling. Axl subfamily members are
implicated in a variety of cellular effects including
survival, proliferation, migration, and phagocytosis.
They are also associated with several types of cancer as
well as inflammatory, autoimmune, vascular, and kidney
diseases. Mer is named after its original reported
expression pattern (monocytes, epithelial, and
reproductive tissues). It is required for the ingestion
of apoptotic cells by phagocytes such as macrophages,
retinal pigment epithelial cells, and dendritic cells.
Mer is also important in maintaining immune homeostasis.
Length = 273
Score = 43.7 bits (103), Expect = 2e-04
Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 38/228 (16%)
Query: 17 FDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERDI---------MVKSKC 67
+ + + +G FG + + Q + + V K+ +I M
Sbjct: 1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDH 60
Query: 68 PYIVNLF------YSFQDMNHVYFIMEYVTGGD-----FVTLLENQPHGYLSESKARFYI 116
P ++ L S Q + I+ ++ GD + L P ++ +F +
Sbjct: 61 PNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMV 120
Query: 117 YELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV-----DKNGRIKSIVP 171
++A ++YL ++HRD+ N +L + + DFG + ++ + GRI + +P
Sbjct: 121 -DIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRI-AKMP 178
Query: 172 VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
V +++A E L YT D+W+ GV +E+ T G TP+
Sbjct: 179 V---KWIAIESL-------ADRVYTSKSDVWAFGVTMWEIATRGQTPY 216
>gnl|CDD|220368 pfam09730, BicD, Microtubule-associated protein Bicaudal-D. BicD
proteins consist of three coiled-coiled domains and are
involved in dynein-mediated minus end-directed transport
from the Golgi apparatus to the endoplasmic reticulum
(ER). For full functioning they bind with GSK-3beta
pfam05350 to maintain the anchoring of microtubules to
the centromere. It appears that amino-acid residues
437-617 of BicD and the kinase activity of GSK-3 are
necessary for the formation of a complex between BicD
and GSK-3beta in intact cells.
Length = 711
Score = 44.1 bits (104), Expect = 3e-04
Identities = 96/420 (22%), Positives = 163/420 (38%), Gaps = 53/420 (12%)
Query: 395 QQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVAT----SSDLVATRHELEEVRSELKEK 450
Q +SH + + EE + L QE KE+ + ++L R EL V++E
Sbjct: 1 GQAYSSHRKVAADGEEREESLLQESASKEAYYLQRILELQAELKQLRAELSNVQAEN--- 57
Query: 451 ENLEKTDDRKLEVCEVSKELEV--LRGELEEQKTATKQWKKDWYQSVKERNAA----VAE 504
E L E E+ EL+ LR E++E K + +D Y ++E N + V+
Sbjct: 58 ERLSSLSQELKEENEML-ELQRGRLRDEIKEYKFREARLLQD-YSELEEENISLQKQVSV 115
Query: 505 LKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQS 564
L+Q+Q E E LK ++ LE+E ++ L A ++ E Q L +E+++ E EQ
Sbjct: 116 LRQSQVEFEGLKHEIRRLEEETELLNSQLEEAARL--KEIAEKQ-LEEALETLKTEREQK 172
Query: 565 AVRVREMSG--------------ISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTR 610
+E+S IS K + E E G+
Sbjct: 173 NALRKELSHHLNLEDFYSLSNLSISLDGLKFSEDPEASTEPNNDGEDE-NGHLNGGPGLA 231
Query: 611 RELETNKDQTIELRAKSKLEK-AEGELTTVREENKKLKQGKI---RLVYSLFKDPQPAQS 666
+ L T + + A + +E L+ E +KLKQ R SL + Q Q+
Sbjct: 232 KSLGTPRKGELFPPAPGVSDLFSELNLS----EIQKLKQQLEQVEREKASLLANLQELQT 287
Query: 667 KLEKAEGELTTVREE----------NKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSN 716
+LE++EG L+ E+ + L+ S +S + E +
Sbjct: 288 QLEQSEGALSEQHEKVNRLTEHLNALRNLQASKEQQDGLDSEKDRGSHEDGDYYEVDING 347
Query: 717 YTERESKLRSANEIIGEYETKITALESTMTRSESYCK-EMVEYLETLQK-NNDILSHDNE 774
E K R A +GE + ++ AL++ + + E +Q +LS +
Sbjct: 348 PEILECKYRVAVSEVGELKAELKALKARYNELQERYEDEKDRLRNEIQNLAEKLLSLEKS 407
Score = 31.0 bits (70), Expect = 3.3
Identities = 28/162 (17%), Positives = 68/162 (41%), Gaps = 4/162 (2%)
Query: 411 EIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKEL 470
EI +L+Q++ + E + + ++L + +LE+ L E+ L +
Sbjct: 260 EIQKLKQQLEQVEREKASLLANLQELQTQLEQSEGALSEQHEKVNRLTEHLNALRNLQAS 319
Query: 471 EVLRGELEEQKTATKQWKKDWYQ-SVKERNAAVAELKQAQTENEALKEKLTSLEQELKVS 529
+ + L+ +K D+Y+ + + + A +E LK +L +L+
Sbjct: 320 KEQQDGLDSEKDRGSHEDGDYYEVDINGPEILECKYRVAVSEVGELKAELKALKARYNEL 379
Query: 530 EEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREM 571
+E ++ L +++ Q L+ + S++K + R ++
Sbjct: 380 QERYEDEKDRLRNEI---QNLAEKLLSLEKSSHEDQERSGDL 418
Score = 31.0 bits (70), Expect = 3.3
Identities = 38/175 (21%), Positives = 69/175 (39%), Gaps = 11/175 (6%)
Query: 385 LALQAQVSSLQQDLTSHTSLLSKKEEEIDRL-------RQEMVKKESDLVATSSDLVATR 437
+L A + LQ L LS++ E+++RL R KE S +
Sbjct: 276 ASLLANLQELQTQLEQSEGALSEQHEKVNRLTEHLNALRNLQASKEQQDGLDSEKDRGSH 335
Query: 438 HELEEVRSELKEKENLE-KTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVK 496
+ + ++ E LE K EV E+ EL+ L+ E + + K ++
Sbjct: 336 EDGDYYEVDINGPEILECKYRVAVSEVGELKAELKALKARYNELQERYEDEKDRLRNEIQ 395
Query: 497 ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALS 551
+ L+++ E+ +E+ LE+EL+ +Q SL++ E S
Sbjct: 396 NLAEKLLSLEKSSHED---QERSGDLEKELRKLTHVAGESQGSLNAAQDELVTFS 447
>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7;
Provisional.
Length = 566
Score = 43.6 bits (103), Expect = 3e-04
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLS-ATGHLKLTDFGSAT--QVDKNGRIKSIVPVGT 174
++ A+ LH G VHRD+KP N++ S +G K+ D G+A +V N K +
Sbjct: 263 QILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLL--D 320
Query: 175 PEYVAPE 181
P Y APE
Sbjct: 321 PRYAAPE 327
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 44.2 bits (105), Expect = 3e-04
Identities = 59/305 (19%), Positives = 115/305 (37%), Gaps = 58/305 (19%)
Query: 381 RTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRH-- 438
R + L+ ++ + S L + +E + L + + +L+A
Sbjct: 843 NRRRVELERALADHESQEQQQRSQLEQAKEGLSALNR---------LLPRLNLLADETLA 893
Query: 439 -ELEEVRSELKEKENLEKTDDRKLEVCE-VSKELEVLR---GELEEQKTATKQWKKDWYQ 493
+EE+R +L E E ++ + + + VL+ + E+ K +Q ++ +
Sbjct: 894 DRVEEIREQLDEAEEAKRFVQQHGNALAQLEPIVSVLQSDPEQFEQLKQDYQQAQQTQ-R 952
Query: 494 SVKERNAAVAELKQAQTE----------------NEALKEKLTSLEQELKVSEEALATAQ 537
K++ A+ E+ Q + NE L+++L EQE + E L AQ
Sbjct: 953 DAKQQAFALTEVVQRRAHFSYEDAAEMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQ 1012
Query: 538 NSLDSKLREHQALSNTIES---MQKEMEQ--SAVRVREMSGISEKYEKDRKTLLE-LKSA 591
L + +L ++ ++ M +E++Q + V SG E+ R L L +
Sbjct: 1013 AQLAQYNQVLASLKSSYDAKRQMLQELKQELQDLGVPADSGAEERARARRDELHARLSAN 1072
Query: 592 KERLELEVRGYKLDLESTRRELETNKDQTIELRAKS---KLEKAEGELTTVREENKKLKQ 648
+ R R +LE + E + KL K E + +RE+ K
Sbjct: 1073 RSR---------------RNQLEK-QLTFCEAEMDNLTKKLRKLERDYHEMREQVVNAKA 1116
Query: 649 GKIRL 653
G +
Sbjct: 1117 GWCAV 1121
Score = 42.6 bits (101), Expect = 8e-04
Identities = 50/248 (20%), Positives = 106/248 (42%), Gaps = 43/248 (17%)
Query: 367 LAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHT---SLLSKKEEEIDRLR-----QE 418
L E +A ++ + +L+L+ ++S Q + L+ K E+ R +E
Sbjct: 444 LEEFQAKEQEAT---EELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARE 500
Query: 419 MVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVS----KELEVLR 474
++++ + + L R L E+ L++++ E+ + + ELE L+
Sbjct: 501 LLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQ 560
Query: 475 GELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALA 534
ELE + ++ + +V+E ++ + E+L + Q L A
Sbjct: 561 EELEAR--------------LESLSESVSEARERRMALRQQLEQLQARIQRLAARAPAWL 606
Query: 535 TAQNSLDSKLREH--QALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAK 592
AQ++L ++LRE + ++ + + M+Q R RE++ E+D EL + K
Sbjct: 607 AAQDAL-ARLREQSGEEFEDSQDVTE-YMQQLLERERELT-----VERD-----ELAARK 654
Query: 593 ERLELEVR 600
+ L+ E+
Sbjct: 655 QALDEEIE 662
Score = 40.3 bits (95), Expect = 0.004
Identities = 38/192 (19%), Positives = 79/192 (41%), Gaps = 35/192 (18%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVK 421
+LL++L E + E ++ L+ ++S L+Q L +RL E K
Sbjct: 500 ELLRRLREQRHLAE-------QLQQLRMRLSELEQRLRQQQRA--------ERLLAEFCK 544
Query: 422 KESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQK 481
+ + +L + ELE L E + + +R++ + + ++L+ L +
Sbjct: 545 RLGKNLDDEDELEQLQEELEARLESLSES--VSEARERRMALRQQLEQLQARIQRLAARA 602
Query: 482 TATKQWKKDWYQSVKERNAAVAELK----QAQTENEALKEKLTSL---EQELKVSEEALA 534
A W + A+A L+ + +++ + E + L E+EL V + LA
Sbjct: 603 PA-------WLAA----QDALARLREQSGEEFEDSQDVTEYMQQLLERERELTVERDELA 651
Query: 535 TAQNSLDSKLRE 546
+ +LD ++
Sbjct: 652 ARKQALDEEIER 663
Score = 37.2 bits (87), Expect = 0.041
Identities = 35/148 (23%), Positives = 65/148 (43%), Gaps = 12/148 (8%)
Query: 488 KKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREH 547
+++ Y S ++ A L + E L E + LEQ+ + + + L Q +L
Sbjct: 292 RRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTAL------- 344
Query: 548 QALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLE 607
IE Q ++E+ R+ E + + E E D + E ++ E E EV K L
Sbjct: 345 -RQQEKIERYQADLEELEERLEEQNEVVE--EADEQ-QEENEARAEAAEEEVDELKSQLA 400
Query: 608 STRRELETNKDQTIELR-AKSKLEKAEG 634
++ L+ + + I+ + A LE+A+
Sbjct: 401 DYQQALDVQQTRAIQYQQAVQALERAKQ 428
Score = 34.5 bits (80), Expect = 0.26
Identities = 70/339 (20%), Positives = 132/339 (38%), Gaps = 75/339 (22%)
Query: 353 MRHWKRDR------LQLLQQLAEAKASL----EDLSCSRTRVLALQAQVSSLQQDLTSHT 402
MRH R L+L ++L ++ L L + L S L+QD + +
Sbjct: 275 MRHANERRVHLEEALELRRELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAAS 334
Query: 403 SLLSK------KEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEK--ENLE 454
L+ ++E+I+R + ++ + E L E EV E E+ EN
Sbjct: 335 DHLNLVQTALRQQEKIERYQADLEELEERL-----------EEQNEVVEEADEQQEENEA 383
Query: 455 KTDDRKLEVCEVSKELEVLRGELEEQKTATKQWK--KDWYQSVKERNA--------AVAE 504
+ + + EV E+ +L + L+ Q+T Q++ + K+ A
Sbjct: 384 RAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDW 443
Query: 505 LKQAQTENEALKEKLTSLEQELKVSEEALA-------------------TAQNSLDSKLR 545
L++ Q + + E+L SLEQ+L V++ A + A + LR
Sbjct: 444 LEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLR 503
Query: 546 EH---QALSNTIESMQ---KEME------QSAVRVRE----MSGISEKYEKDRKTLL-EL 588
+ L+ ++ ++ E+E Q A R+ G + E + + L EL
Sbjct: 504 RLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEEL 563
Query: 589 KSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKS 627
++ E L V + + R++LE + + L A++
Sbjct: 564 EARLESLSESVSEARERRMALRQQLEQLQARIQRLAARA 602
Score = 33.0 bits (76), Expect = 0.73
Identities = 46/240 (19%), Positives = 94/240 (39%), Gaps = 33/240 (13%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKE----EEIDRLRQ 417
QL ++ ++ E + Q +Q + T ++ ++ E+
Sbjct: 922 QLEPIVSVLQSDPEQFEQLKQDYQQAQQTQRDAKQQAFALTEVVQRRAHFSYED----AA 977
Query: 418 EMVKKESDLV-ATSSDLVATRHELEEVRSELKEKEN-----------LEKTDDRKLE-VC 464
EM+ K SDL L E R +L++ + L+ + D K + +
Sbjct: 978 EMLAKNSDLNEKLRQRLEQAEQERTRAREQLRQAQAQLAQYNQVLASLKSSYDAKRQMLQ 1037
Query: 465 EVSKELEVL--RGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEA----LKEK 518
E+ +EL+ L + ++ A + + + + + + +L++ T EA L +K
Sbjct: 1038 ELKQELQDLGVPADSGAEERARAR-RDELHARLSANRSRRNQLEKQLTFCEAEMDNLTKK 1096
Query: 519 LTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIES--MQKEM-EQSAVRVREMSGIS 575
L LE++ E + A+ + LR N +E ++E+ SA +R MS +
Sbjct: 1097 LRKLERDYHEMREQVVNAKAGWCAVLR--LVKDNGVERRLHRRELAYLSADELRSMSDKA 1154
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 43.1 bits (102), Expect = 5e-04
Identities = 64/348 (18%), Positives = 129/348 (37%), Gaps = 41/348 (11%)
Query: 383 RVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEE 442
+ + L Q++ + L + + ++ L ++ + DL L E+E
Sbjct: 217 ELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEA 276
Query: 443 VRSELKEK--------------ENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWK 488
R + + NL + +L+ E S++ ++ + ELEE+ +
Sbjct: 277 ARKANRAQLRELAADPLPLLLIPNLLDSTKAQLQKEEQSQQNQLTQEELEER----DKEL 332
Query: 489 KDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQ 548
+ + V E+ A+ E K T E ++S L + + RE Q
Sbjct: 333 LESLPKLALPAEHVKEI-AAELA-EIDKPATTDSEIPHRLSGSELTQLEVLIQQVKRELQ 390
Query: 549 ALSNTIESMQKEMEQSAVRV-REMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLE 607
+ + +E+E+ V +++S I + + +L + E+ + ++E
Sbjct: 391 DAKSQLLKELRELEEELAEVDKKISTIP-----SEEQIAQLLEELGEAQNELFRSEAEIE 445
Query: 608 STRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSK 667
R+LET K+ LR + + E + K + F++ + K
Sbjct: 446 ELLRQLETLKEAIEALRKTLDEKTKQKINAFELERAITIAD-KAKKTLKEFREKL-LERK 503
Query: 668 LEKAEGELTTVREENKKLKVSFFFTLESNSLFW---LDPNTFLSSLED 712
L++ E E+T SF + ++L +DP TF SL D
Sbjct: 504 LQQLEEEITK----------SFKKLMRKHNLISRLKIDPETFAVSLYD 541
Score = 31.6 bits (72), Expect = 2.0
Identities = 21/110 (19%), Positives = 43/110 (39%), Gaps = 15/110 (13%)
Query: 451 ENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQT 510
N+ + + + E+E L EL+EQ Y+ + + E+ +
Sbjct: 192 TNVLRRRKKSELPSSILSEIEALEAELKEQSEK--------YEDLAQ------EIAHLRN 237
Query: 511 ENEALKEKLTSLEQELKVSEEALATAQNSLDSKLRE-HQALSNTIESMQK 559
E E + L SLE++ + L + L+ +L+E A +++
Sbjct: 238 ELEEAQRSLESLEKKFRSEGGDLFEEREQLERQLKEIEAARKANRAQLRE 287
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 43.1 bits (101), Expect = 5e-04
Identities = 77/331 (23%), Positives = 144/331 (43%), Gaps = 53/331 (16%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKE--------KENLEKT 456
L +EE ++L++E+ E + + +L +T+ +E+++ +L++ K++ E
Sbjct: 38 LMLAQEEANKLKKELEVAEKEKLQVLKELESTKRTVEDLKLKLEKAEKEEQQAKQDSELA 97
Query: 457 DDRKLEVCEVSKELEVLR-----GELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTE 511
R E+ + +ELEV R EL+ K ++ ++++ V+ER+AA+ ++A
Sbjct: 98 KLRAEELEQGIQELEVERYITATAELDSVKEELRKIRQEYDALVEERDAALKRAEEAICA 157
Query: 512 NEALKEKLTSLEQELKVSEEALATAQNSLDSKL-------------------------RE 546
++ ++K+ L +E+ +E+L A + +E
Sbjct: 158 SKVNEKKVEELTKEIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETYEKELKEAEKE 217
Query: 547 HQALSNTIES---MQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLE---LEVR 600
+ L ++ ++K E SA IS L EL+ AK LE E +
Sbjct: 218 LERLKQDLDPEKDLEKLAEASAELESLQKEISIM-ASVASVLKELEEAKANLEKAAEEEK 276
Query: 601 GYKLDLESTRRELETNKDQTIELRAKSKLEKA-----EGELTTVREENKKLKQGKIRLVY 655
+ +ES ++ELE K + ELR K + E EL + E + + K+
Sbjct: 277 SLRNLVESLKQELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKESKAREKMV--- 333
Query: 656 SLFKDPQPAQSKLEKAEGELTTVREENKKLK 686
+ Q A S+ E+A E REE +KLK
Sbjct: 334 EIPLKLQQASSEAEEARKEAEAAREELRKLK 364
Score = 33.8 bits (77), Expect = 0.40
Identities = 39/190 (20%), Positives = 76/190 (40%), Gaps = 11/190 (5%)
Query: 506 KQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSA 565
+TE +E+ L++EL+V+E+ L+S R + L +E +KE +Q+
Sbjct: 32 LVKETELMLAQEEANKLKKELEVAEKEKLQVLKELESTKRTVEDLKLKLEKAEKEEQQAK 91
Query: 566 V-------RVREMSGISEKYEKDR--KTLLELKSAKERLELEVRGYKLDLESTRRELETN 616
R E+ ++ E +R EL S KE L + Y +E R+
Sbjct: 92 QDSELAKLRAEELEQGIQELEVERYITATAELDSVKEELRKIRQEYDALVEE--RDAALK 149
Query: 617 KDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELT 676
+ + +K +K E + + L++ + + + A K + E
Sbjct: 150 RAEEAICASKVNEKKVEELTKEIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETYEK 209
Query: 677 TVREENKKLK 686
++E K+L+
Sbjct: 210 ELKEAEKELE 219
Score = 32.3 bits (73), Expect = 1.1
Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 37/272 (13%)
Query: 364 LQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEE-------IDRLR 416
L++LAEA A LE L + +++ A V+S+ ++L + L K EE ++ L+
Sbjct: 231 LEKLAEASAELESLQ----KEISIMASVASVLKELEEAKANLEKAAEEEKSLRNLVESLK 286
Query: 417 QEMVKKESDLVATS------SDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKEL 470
QE+ +++ +L + ++ KE + EK + L++ + S E
Sbjct: 287 QELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKESKAREKMVEIPLKLQQASSEA 346
Query: 471 EVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALK--EKLTSLEQELKV 528
E R E E + ++ K++ Q+ A L+ A E EA K E L
Sbjct: 347 EEARKEAEAAREELRKLKEEAEQTKAALETAELRLEAALKEAEAAKAAEAL--------- 397
Query: 529 SEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLEL 588
ALA + +S+ I +E E+ + + E ++EK K L ++
Sbjct: 398 ---ALAEIKALQESEESAKADSPRKITLSLEEYEELSKKAEEAEELAEK--KVAAALAQV 452
Query: 589 KSAKERLELEVRGYKLDLESTRRELETNKDQT 620
+ AKE E K LE +E+E K
Sbjct: 453 EEAKES---ENESLK-KLEEASKEIEEKKAAL 480
Score = 30.7 bits (69), Expect = 3.4
Identities = 51/242 (21%), Positives = 98/242 (40%), Gaps = 25/242 (10%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSL-QQDLTSHTSLLSKKEEEIDRLRQEMV 420
+L +++ K SLE + + + QD ++ L + E+E++RL+Q++
Sbjct: 167 ELTKEIIAMKESLERAHAAHLEAEEERIGAALEKDQDRETYEKELKEAEKELERLKQDL- 225
Query: 421 KKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQ 480
D L ELE ++ E+ ++ V KELE + LE+
Sbjct: 226 ----DPEKDLEKLAEASAELESLQKEISIMASVAS----------VLKELEEAKANLEKA 271
Query: 481 KTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSL 540
K + V+ EL++ + E E L+EK E+ E L ++
Sbjct: 272 AEEEKSLR----NLVESLK---QELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEK 324
Query: 541 DSKLREHQA-LSNTIESMQKEMEQSAVRVREM-SGISEKYEKDRKTLLELKSAKERLELE 598
+SK RE + ++ E E++ + + E+ +T L++A+ RLE
Sbjct: 325 ESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTKAALETAELRLEAA 384
Query: 599 VR 600
++
Sbjct: 385 LK 386
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 43.2 bits (102), Expect = 6e-04
Identities = 60/338 (17%), Positives = 111/338 (32%), Gaps = 37/338 (10%)
Query: 298 KKDKRKASPSLKAFQKEGRYLDSALPLIGISYTGEPMGANTNTSSDSTLPPSSEDMRHWK 357
++ + A L+ +KE L+ AL + ++ + A LP + +M W
Sbjct: 560 RQQEEAARRRLEQLEKELEVLELALAALREAWQAQWAAAG--------LPLTPAEMEDWL 611
Query: 358 RDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSL------QQDLTSHTSLLSKKEEE 411
+R +Q+ + +L R L+A + + LL +
Sbjct: 612 AERATAREQVRAYFKARAELDALLDRRARLRAALRAALKAVAIVLPGEELAELLELARQL 671
Query: 412 IDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELE 471
++ ++ +K S L D LEE E E +
Sbjct: 672 LEEAEKQAARKAS-LDERLRD---AERALEEAEERHDE------AQSALEAWQEQWYDAL 721
Query: 472 VLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEE 531
+ G A + Q++KE+ A +L+Q A++ L E+E++ E
Sbjct: 722 LEAGLGGRASPAGALDALELLQNIKEKLQAADDLRQ---RIAAMERDLARFEEEVEALAE 778
Query: 532 ALATAQN--SLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE-L 588
A+A D R + K +A +++ E+ EK+ L
Sbjct: 779 AVAPEMLGTPADETARALKQRL-------KRARDTAAAAEKLAEEIEEAEKEVSEAAAAL 831
Query: 589 KSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAK 626
A+ RL +R + D ELR +
Sbjct: 832 DEAEARLTALLRAARCTTIEELLAAVERSDTYRELRKR 869
Score = 40.9 bits (96), Expect = 0.003
Identities = 81/371 (21%), Positives = 129/371 (34%), Gaps = 70/371 (18%)
Query: 440 LEEVRSEL-KEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKER 498
L VR EL KE + L K RK E+ KEL+ L E+ E + T+ WK VK
Sbjct: 128 LGSVRDELEKEADELWKPRGRKPEINVALKELKELEAEIREVQLKTRTWKD----LVKAL 183
Query: 499 NAAVAELKQAQTE---NEALKEKLTSLEQ------ELKVSEEALA--------------- 534
+ A EL + E E K++L L + E K E+ LA
Sbjct: 184 DEAEEELANLRKELRQLEKEKQRLERLRRLLPLLAERKALEQQLAALGEVIDLPPDAVER 243
Query: 535 --TAQNSLDSKLREHQALSNTIESMQKEME---------QSAVRVREMSGISEKYEKDRK 583
A+ L + R + L+ +E++Q E++ A + + +Y +
Sbjct: 244 YEEARAELRAARRNLELLTERLEALQAELDEISLDEELLAQAAAIEALHQQRGEYRNAEQ 303
Query: 584 TLLEL-------KSAKERLELEVRGYKLDLESTR------------RELETNK---DQTI 621
L + + A L ++ G D E+ ELE K DQ +
Sbjct: 304 DLPDREGEIANAREAAAALLAQI-GPDADEEAVESLRPSLAAKETVTELEKRKEALDQAL 362
Query: 622 ELRAKSKLEKAEGELTTVREENKKL--KQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVR 679
+ A+ LE+ E EL VR + L L +L + A E
Sbjct: 363 KS-ARDALEERERELKQVRAQLAALPTVTVPEPLRAALADALRAGDIDAALAALEQEVAV 421
Query: 680 EENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKS---NYTERESKLRSANEIIGEYET 736
+ + + L L L + S E +++ E R + + E E
Sbjct: 422 AKRELAQALSRLGLWRGDLEELVA-LPVPSAEQVQAFLKEAEEIMQAKRQKRDRLLELEE 480
Query: 737 KITALESTMTR 747
+ LE +
Sbjct: 481 DLETLELQLRH 491
Score = 32.8 bits (75), Expect = 0.85
Identities = 67/307 (21%), Positives = 106/307 (34%), Gaps = 48/307 (15%)
Query: 357 KRDRLQLLQQLAEAKASLEDLSC----SRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEI 412
KR+ Q L +L + LE+L S +V A + + Q L + EE++
Sbjct: 423 KRELAQALSRLGLWRGDLEELVALPVPSAEQVQAFLKEAEEIMQAKRQKRDRLLELEEDL 482
Query: 413 DRLR-QEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLE--VCEVSKE 469
+ L Q + V T ++ A R + + +++ L + E V +
Sbjct: 483 ETLELQLRHLDAAGAVPTEEEVAAARARRDALWQDIRRGYALLEPTASAYEEAVESADQL 542
Query: 470 LEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVS 529
+ L E + V EL+ + + EA + +L LE+EL+V
Sbjct: 543 ADRLLREAQL----------------------VGELQSLRQQEEAARRRLEQLEKELEVL 580
Query: 530 EEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELK 589
E ALA L + Q + + EME Y K R L L
Sbjct: 581 ELALAA----LREAWQA-QWAAAGLPLTPAEMEDWLAERATAREQVRAYFKARAELDALL 635
Query: 590 SAKERLELEVR-----------GYKLD--LESTRRELET-NKDQTIELRAKSKLEKAEGE 635
+ RL +R G +L LE R+ LE K + +L AE
Sbjct: 636 DRRARLRAALRAALKAVAIVLPGEELAELLELARQLLEEAEKQAARKASLDERLRDAERA 695
Query: 636 LTTVREE 642
L E
Sbjct: 696 LEEAEER 702
>gnl|CDD|219189 pfam06818, Fez1, Fez1. This family represents the eukaryotic Fez1
protein. Fez1 contains a leucine-zipper region with
similarity to the DNA-binding domain of the
cAMP-responsive activating-transcription factor 5. There
is evidence that Fez1 inhibits cancer cell growth
through regulation of mitosis, and that its alterations
result in abnormal cell growth. Note that some family
members contain more than one copy of this region.
Length = 200
Score = 41.4 bits (97), Expect = 6e-04
Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 41/219 (18%)
Query: 407 KKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEV 466
+K EI L+Q++ + +++L + ++V+ R +L E R++L+E E E+ + + +
Sbjct: 7 QKSGEISLLKQQLKESQAELAQKAGEIVSLRAQLREARAQLRESE--EQLQELQDALRTK 64
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
+ ELEV EL+ +K +E E L+EK LE EL
Sbjct: 65 TLELEVCENELQRKK----------------------------SEAELLREKAGRLEAEL 96
Query: 527 KVSEEALATAQNSLDSKLRE-------HQALSNTIESMQKEMEQSAVRVREMSGISEK-- 577
EALA+ L L E QA + +++++E+ +R E+
Sbjct: 97 AELREALASCPAPLPVLLTESDEAKAQRQAGEAGLRELRRQVERLRAELRYERRRREEQA 156
Query: 578 --YEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELE 614
+E++R+ E K R + +++ + + +ELE
Sbjct: 157 SSFEQERRVWQEEKEKVIRYQKQLQQSYVQMYQRNQELE 195
Score = 31.0 bits (70), Expect = 1.8
Identities = 45/180 (25%), Positives = 77/180 (42%), Gaps = 32/180 (17%)
Query: 460 KLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKL 519
K EVC+ S E+ +L+ +L+E + AEL Q E +L+ +L
Sbjct: 2 KWEVCQKSGEISLLKQQLKESQ---------------------AELAQKAGEIVSLRAQL 40
Query: 520 TSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYE 579
+L+ SEE L Q++L +K E + N ++ + E E +RE +G E
Sbjct: 41 REARAQLRESEEQLQELQDALRTKTLELEVCENELQRKKSEAEL----LREKAGRLEAEL 96
Query: 580 KDRKTLLELKSAKERLEL----EVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGE 635
+ + L A + L E + + E+ REL ++ LRA+ + E+ E
Sbjct: 97 AELREALASCPAPLPVLLTESDEAKAQRQAGEAGLRELRRQVER---LRAELRYERRRRE 153
>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine
Kinase, Tyro3. Protein Tyrosine Kinase (PTK) family;
Tyro3; catalytic (c) domain. The PTKc family is part of
a larger superfamily that includes the catalytic domains
of other kinases such as protein serine/threonine
kinases, RIO kinases, and phosphoinositide 3-kinase
(PI3K). PTKs catalyze the transfer of the
gamma-phosphoryl group from ATP to tyrosine (tyr)
residues in protein substrates. Tyro3 (or Sky) is a
member of the Axl subfamily, which is composed of
receptor tyr kinases (RTKs) containing an extracellular
ligand-binding region with two immunoglobulin-like
domains followed by two fibronectin type III repeats, a
transmembrane segment, and an intracellular catalytic
domain. Binding to their ligands, Gas6 and protein S,
leads to receptor dimerization, autophosphorylation,
activation, and intracellular signaling. Tyro3 is
predominantly expressed in the central nervous system
and the brain, and functions as a neurotrophic factor.
It is also expressed in osteoclasts and has a role in
bone resorption.
Length = 273
Score = 41.4 bits (97), Expect = 0.001
Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 21/143 (14%)
Query: 86 IMEYVTGGDFVTLL-----ENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDN 140
I+ ++ GD T L +P ++ RF I ++A ++YL ++HRD+ N
Sbjct: 85 ILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMI-DIASGMEYLSSKNFIHRDLAARN 143
Query: 141 MLLSATGHLKLTDFGSATQVDKNGRIK----SIVPVGTPEYVAPEVLEWMEGNHGSDGYT 196
+L+ + + DFG + ++ + S +PV +++A E L + YT
Sbjct: 144 CMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPV---KWLALESL-------ADNVYT 193
Query: 197 GSCDLWSIGVVSYELLT-GSTPF 218
D+W+ GV +E++T G TP+
Sbjct: 194 THSDVWAFGVTMWEIMTRGQTPY 216
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 42.2 bits (99), Expect = 0.001
Identities = 60/309 (19%), Positives = 112/309 (36%), Gaps = 39/309 (12%)
Query: 515 LKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGI 574
L+EKL S EL+ ++ +A + S L+E + LS + + + E+S +
Sbjct: 188 LEEKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSL 247
Query: 575 SE---KYEKDRKT-----------LLELKSAKERLEL-----------EVRGY---KLDL 606
+ +YE + KT K +ER + Y K D+
Sbjct: 248 EDMKNRYESEIKTAESDLSMELEKNNYYKELEERHMKIINDPVYKNRNYINDYFKYKNDI 307
Query: 607 ESTRRELETNKDQTIE----LRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQ 662
E+ ++ L + + ++ S L+K + + K + L
Sbjct: 308 ENKKQILSNIDAEINKYHAIIKKLSVLQKDYNDY----IKKKSRYDDLNNQILELEGYEM 363
Query: 663 PAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERES 722
S L+ E + E +K ++ F E + +DP+ L ++ + S
Sbjct: 364 DYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEINVKLQDISS 423
Query: 723 KLRSANEIIGEYETKITALESTMT--RSESYCKEMVEYLETLQKNNDILSHDNEQLRKKN 780
K+ S N+ I + L M +S C L +K+N I++H NE+ +
Sbjct: 424 KVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGE-EKSNHIINHYNEKKSRLE 482
Query: 781 NDILSHDNE 789
I + E
Sbjct: 483 EKIREIEIE 491
Score = 41.0 bits (96), Expect = 0.003
Identities = 75/488 (15%), Positives = 169/488 (34%), Gaps = 65/488 (13%)
Query: 351 EDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEE 410
E ++ + + +Q+A+ + S R+ +L S + LS E+
Sbjct: 190 EKLKSSNLELENIKKQIADDEKSHSITLKEIERLSIEYNNAMDDYNNLKSALNELSSLED 249
Query: 411 EIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKEL 470
+R E+ ESDL +E+ + N +R +
Sbjct: 250 MKNRYESEIKTAESDLSMELEKNN----YYKELEERHMKIINDPVYKNR-----NYINDY 300
Query: 471 EVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSE 530
+ ++E +K + ++ L++ + K + L ++
Sbjct: 301 FKYKNDIENKKQILSNIDAE-INKYHAIIKKLSVLQKDYNDYIKKKSRYDDLNNQI---- 355
Query: 531 EALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISE--------KYEKDR 582
L + +S L+ ++L IE K +E+ + + E+ I E + +
Sbjct: 356 LELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKELNEIN 415
Query: 583 KTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTI--------------------- 621
L ++ S L +R + +L+ R +E Q++
Sbjct: 416 VKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYN 475
Query: 622 --ELRAKSKLEKAEGELTTVREENKKLKQ-------GKIRLVYSLFKDPQPAQSKLEKAE 672
+ R + K+ + E E+ + E+ LK+ +I + + + A++ LE +
Sbjct: 476 EKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLESEEINKSINEYNKIESARADLEDIK 535
Query: 673 GELTTVREENKK-------LKVSFFFTLESNSLFWLDPNTFLSS--LEDLKSNYTERESK 723
++ +++++ K K L+S WL+ +S +E +S E + +
Sbjct: 536 IKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIETNRSRSNEIKKQ 595
Query: 724 LRSANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDI 783
L + E E +S + +E+ L N +N+ L +K
Sbjct: 596 LNDLESRLQEIEIGFPDDKSY---IDKSIREIENEANNL-NNKYNEIQENKILIEKLRGK 651
Query: 784 LSHDNEQL 791
+ + +Q+
Sbjct: 652 IDNYKKQI 659
Score = 29.5 bits (66), Expect = 8.3
Identities = 69/449 (15%), Positives = 166/449 (36%), Gaps = 66/449 (14%)
Query: 354 RHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKE--EE 411
R++ D + + K L ++ + A+ ++S LQ+D + + KK ++
Sbjct: 294 RNYINDYFKYKNDIENKKQILSNIDAEINKYHAIIKKLSVLQKD---YNDYIKKKSRYDD 350
Query: 412 IDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKE--KENLEKTDDRKLEVCEVSKE 469
++ E+ E D + + + + ++EE ++ E ++++ + KE
Sbjct: 351 LNNQILELEGYEMDYNSYLKSIESLKKKIEEYSKNIERMSAFISEILKIQEIDPDAIKKE 410
Query: 470 LEVLRGELEE--QKTATKQWKKDWYQSVKE---RNAAVAE-----------LKQAQTEN- 512
L + +L++ K ++ + + + RN + L + ++ +
Sbjct: 411 LNEINVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHI 470
Query: 513 -EALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREM 571
EK + LE++++ E + +D K+ + + +ES +E+ +S ++
Sbjct: 471 INHYNEKKSRLEEKIREIEIEV----KDIDEKIVDLKKRKEYLES--EEINKSINEYNKI 524
Query: 572 SGISEKYEKDRKTLLELKSAK---ERLELEVRGYKL-DLESTRRE------------LET 615
E + + ELK E ++ + KL DL+S R +ET
Sbjct: 525 ESARADLEDIKIKINELKDKHDKYEEIKNRYKSLKLEDLDSKRTSWLNALAVISLIDIET 584
Query: 616 NKDQTIELRAK-----SKLEKAEGELTTVR----------EENKKLKQGKIRLVYSLFKD 660
N+ ++ E++ + S+L++ E + E K +
Sbjct: 585 NRSRSNEIKKQLNDLESRLQEIEIGFPDDKSYIDKSIREIENEANNLNNKYNEIQENKIL 644
Query: 661 PQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTER 720
+ + K++ + ++ + LK + + +L+D K+N
Sbjct: 645 IEKLRGKIDNYKKQIAEIDSIIPDLKEITSRINDIED----NLKKSRKALDDAKANRARL 700
Query: 721 ESKLRSANEIIGEYETKITALESTMTRSE 749
ES + I E +I + T+ +
Sbjct: 701 ESTIEILRTRINELSDRINDINETLESMK 729
>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine
Kinase, Colony-Stimulating Factor-1 Receptor. Protein
Tyrosine Kinase (PTK) family; Colony-Stimulating
Factor-1 Receptor (CSF-1R); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. CSF-1R,
also called c-Fms, is a member of the Platelet Derived
Growth Factor Receptor (PDGFR) subfamily of proteins,
which are receptor tyr kinases (RTKs) containing an
extracellular ligand-binding region with five
immunoglobulin-like domains, a transmembrane segment,
and an intracellular catalytic domain. The binding of
CSF-1R to its ligand, CSF-1, leads to receptor
dimerization, trans phosphorylation and activation, and
intracellular signaling. CSF-1R signaling is critical in
the regulation of macrophages and osteoclasts. It leads
to increases in gene transcription and protein
translation, and induces cytoskeletal remodeling. CSF-1R
signaling leads to a variety of cellular responses
including survival, proliferation, and differentiation
of target cells. It plays an important role in innate
immunity, tissue development and function, and the
pathogenesis of some diseases including atherosclerosis
and cancer. CSF-1R signaling is also implicated in
mammary gland development during pregnancy and
lactation. Aberrant CSF-1/CSF-1R expression correlates
with tumor cell invasiveness, poor clinical prognosis,
and bone metastasis in breast cancer. Although the
structure of the human CSF-1R catalytic domain is known,
it is excluded from this specific alignment model
because it contains a deletion in its sequence.
Length = 374
Score = 41.4 bits (97), Expect = 0.001
Identities = 31/108 (28%), Positives = 58/108 (53%), Gaps = 17/108 (15%)
Query: 117 YELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQV--DKNGRIK--SIVPV 172
++AQ + +L +HRD+ N+LL+ K+ DFG A + D N +K + +PV
Sbjct: 219 SQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPV 278
Query: 173 GTPEYVAPE-VLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
+++APE + + + YT D+WS G++ +E+ + G +P+
Sbjct: 279 ---KWMAPESIFDCV--------YTVQSDVWSYGILLWEIFSLGKSPY 315
>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine
Kinases, Discoidin Domain Receptors. Protein Tyrosine
Kinase (PTK) family; Discoidin Domain Receptor (DDR)
subfamily; catalytic (c) domain. The DDR subfamily
consists of homologs of mammalian DDR1, DDR2, and
similar proteins. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
DDR subfamily members are receptor tyr kinases (RTKs)
containing an extracellular discoidin homology domain, a
transmembrane segment, an extended juxtamembrane region,
and an intracellular catalytic domain. The binding of
the ligand, collagen, to DDRs results in a slow but
sustained receptor activation. DDRs regulate cell
adhesion, proliferation, and extracellular matrix
remodeling. They have been linked to a variety of human
cancers including breast, colon, ovarian, brain, and
lung. There is no evidence showing that DDRs act as
transforming oncogenes. They are more likely to play a
role in the regulation of tumor growth and metastasis.
Length = 296
Score = 41.2 bits (97), Expect = 0.002
Identities = 53/235 (22%), Positives = 87/235 (37%), Gaps = 56/235 (23%)
Query: 19 IKRFIQQGNFGDIYLVE-------EKQSHNTFVMK--------KVLR----EKMPNTIER 59
+ +G FG+++L E +++ KVLR + +
Sbjct: 9 FVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLK 68
Query: 60 D--IMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDF-----------VTLLENQPHGY 106
+ I+ + P I L + IMEY+ GD L N
Sbjct: 69 EVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSK--S 126
Query: 107 LSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKN--- 163
LS S + ++A ++YL L +VHRD+ N L+ +K+ DFG + + +
Sbjct: 127 LSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYY 186
Query: 164 ---GRIKSIVPVGTPEYVAPEVLEWM--EGNHGSDGYTGSCDLWSIGVVSYELLT 213
GR AP + WM E +T D+W+ GV +E+LT
Sbjct: 187 RVQGR-------------APLPIRWMAWESVLL-GKFTTKSDVWAFGVTLWEILT 227
>gnl|CDD|234084 TIGR03007, pepcterm_ChnLen, polysaccharide chain length determinant
protein, PEP-CTERM locus subfamily. Members of this
protein family belong to the family of polysaccharide
chain length determinant proteins (pfam02706). All are
found in species that encode the PEP-CTERM/exosortase
system predicted to act in protein sorting in a number
of Gram-negative bacteria, and are found near the epsH
homolog that is the putative exosortase gene [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 498
Score = 41.2 bits (97), Expect = 0.002
Identities = 34/186 (18%), Positives = 68/186 (36%), Gaps = 30/186 (16%)
Query: 405 LSKKEEEIDRLRQE----MVKKESDLVATSSDLVATRHELEEVRSELKEKEN----LEK- 455
L E + +QE + +E D S++ + ELE R EL E L++
Sbjct: 177 LEAAENRLKAFKQENGGILPDQEGDYY---SEISEAQEELEAARLELNEAIAQRDALKRQ 233
Query: 456 -TDDRKLEVCEVSKELEVLRGELEEQKTATKQWK---KDWYQSVKERNAAVAELKQAQTE 511
+ + + S L G +E + + D + V +A+L++ + E
Sbjct: 234 LGGEEPVLLAGSSVANSELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQKEE 293
Query: 512 NEALK--------------EKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESM 557
+ K ++L E + +L L +++ ++L TI +
Sbjct: 294 EGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEV 353
Query: 558 QKEMEQ 563
+ E+ Q
Sbjct: 354 EAELTQ 359
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 40.9 bits (97), Expect = 0.002
Identities = 45/194 (23%), Positives = 74/194 (38%), Gaps = 46/194 (23%)
Query: 448 KEKENLEKTDDRKLEVCEVSKELEVLRGELE-EQKTATKQWKKDWYQSVKERNAAVAEL- 505
+ + E+ R LE E KE E ++ E E K + + ++ + ++ER + +L
Sbjct: 31 AKIKEAEEEAKRILE--EAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLE 88
Query: 506 KQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSA 565
K+ + E L KL LE+ EE L + L+ K +E +E ++E+E
Sbjct: 89 KRLLQKEENLDRKLELLEKR----EEELEKKEKELEQKQQE-------LEKKEEELE--- 134
Query: 566 VRVREMSGISEKYEKDRKTLLELKS-----AKERLELEVRGYKLDLESTRRELETNKDQT 620
E E+ + L + AKE L LE E
Sbjct: 135 ----------ELIEEQLQELERISGLTAEEAKEIL----------LEKVEEEARHEAAVL 174
Query: 621 I---ELRAKSKLEK 631
I E AK + +K
Sbjct: 175 IKEIEEEAKEEADK 188
Score = 34.8 bits (81), Expect = 0.18
Identities = 23/110 (20%), Positives = 48/110 (43%), Gaps = 16/110 (14%)
Query: 388 QAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSEL 447
+ ++ L++ L L +K E +++ +E+ KKE +L +L ELEE+ E
Sbjct: 81 RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQ 140
Query: 448 KEKENLEKTDDRKLEVCEVSKE------LEVLRGELEEQKTAT-KQWKKD 490
++ LE + ++ E LE + E + K+ +++
Sbjct: 141 LQE--LE-------RISGLTAEEAKEILLEKVEEEARHEAAVLIKEIEEE 181
Score = 29.7 bits (68), Expect = 6.9
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 36/163 (22%)
Query: 365 QQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKES 424
+ L EAK E + + +L + ++ L+ + L ++ E+ +L + +++KE
Sbjct: 42 RILEEAKKEAEAIK--KEALLEAKEEIHKLRNEFEKE---LRERRNELQKLEKRLLQKEE 96
Query: 425 DLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTAT 484
+L L ELE+ EL++K+ +ELE ELEE
Sbjct: 97 NLDRKLELLEKREEELEKKEKELEQKQ----------------QELEKKEEELEEL---- 136
Query: 485 KQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
+ + ++ L T EA + L +E+E +
Sbjct: 137 -------IEEQLQELERISGL----TAEEAKEILLEKVEEEAR 168
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 38.7 bits (91), Expect = 0.002
Identities = 35/144 (24%), Positives = 66/144 (45%), Gaps = 18/144 (12%)
Query: 441 EEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNA 500
EE+ +LKE E ++ +++ E+ + K+ + L E+E+ + +KE
Sbjct: 17 EELEEKLKELE--QENLEKEQEITSLQKKNQQLEEEVEKLEE-----------QLKEAKE 63
Query: 501 AVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKE 560
+ E ++ T EAL ++ LE+EL+ SE+ L KLRE + E K
Sbjct: 64 KLEESEKLATNAEALTRRIQLLEEELEESEKRLKET----TEKLREADKKAEESERKVKA 119
Query: 561 MEQSAVRV-REMSGISEKYEKDRK 583
+E + + +KY++ +K
Sbjct: 120 LENERDEWEEKYEELEKKYKEAKK 143
Score = 36.0 bits (84), Expect = 0.018
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 19/142 (13%)
Query: 409 EEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKE-KENLEKTDDRKLEVCEVS 467
EE++ L QE ++KE ++ + E+E++ +LKE KE LE+++ ++
Sbjct: 20 EEKLKELEQENLEKEQEITSLQKKNQQLEEEVEKLEEQLKEAKEKLEESEKLATNAEALT 79
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
+ +++L ELEE + K+ +L++A + E + K+ +LE E
Sbjct: 80 RRIQLLEEELEESEKRLKE--------------TTEKLREADKKAEESERKVKALENERD 125
Query: 528 VSEEALATAQNSLDSKLREHQA 549
EE L+ K +E +
Sbjct: 126 EWEEKY----EELEKKYKEAKK 143
>gnl|CDD|178768 PLN03229, PLN03229, acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha; Provisional.
Length = 762
Score = 41.0 bits (96), Expect = 0.003
Identities = 45/212 (21%), Positives = 89/212 (41%), Gaps = 20/212 (9%)
Query: 441 EEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGE-LEEQKTATKQWKKDWYQSVKERN 499
E V + + K N++K + K V E+ E+E L+ + L+ +++++K + + +++
Sbjct: 409 EGVPVDPERKVNMKKREAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLK 468
Query: 500 AAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQK 559
+ L+E+L +L +E + A +Q+ L H L IE ++
Sbjct: 469 KEIDLEYTEAVIAMGLQERLENLREEF-----SKANSQDQL-----MHPVLMEKIEKLKD 518
Query: 560 EMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQ 619
E + R + K + L E AK E + + KL E ++ E
Sbjct: 519 EFNKRLSRAPNYLSLKYKLDM----LNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRP 574
Query: 620 TIELRAKSKLEKAE---GELTTVREENKKLKQ 648
E++ K + KAE ++ E + LK+
Sbjct: 575 --EIKEKMEALKAEVASSGASSGDELDDDLKE 604
Score = 36.8 bits (85), Expect = 0.051
Identities = 51/260 (19%), Positives = 103/260 (39%), Gaps = 62/260 (23%)
Query: 383 RVLALQAQVSSLQ-QDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELE 441
R+ L+ + S QD H L+ K I++L+ E K+ ++ + + ++ +++L+
Sbjct: 487 RLENLREEFSKANSQDQLMHPVLMEK----IEKLKDEFNKR----LSRAPNYLSLKYKLD 538
Query: 442 EVRSELKEKENLEKTDDR---KLEV----------CEVSKELEVLRGELEEQKTAT-KQW 487
+ + K EK K E+ E+ +++E L+ E+ ++ +
Sbjct: 539 MLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGASSGDEL 598
Query: 488 KKDWYQSV-KERNAAVAELKQ--------------------AQTENEALKEKLTSLEQEL 526
D + V K + EL QT L+EK+ SL +E+
Sbjct: 599 DDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEI 658
Query: 527 -KVSEEALATAQNSLDSKLRE------------HQALSNTIESMQKEMEQSAVRVREMSG 573
K E + ++ L SK+ IE+++++++Q S
Sbjct: 659 NKKIERVIRSSD--LKSKIELLKLEVAKASKTPDVTEKEKIEALEQQIKQKIAEALNSSE 716
Query: 574 ISEKYEKDRKTLLELKSAKE 593
+ EK+E+ EL +A+E
Sbjct: 717 LKEKFEELEA---ELAAARE 733
Score = 31.4 bits (71), Expect = 2.5
Identities = 39/154 (25%), Positives = 65/154 (42%), Gaps = 19/154 (12%)
Query: 513 EALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMS 572
EA+K + LE E++ +E + A+ S SK E AL+ IE ++KE++
Sbjct: 425 EAVKTPVRELEGEVEKLKEQILKAKES-SSKPSE-LALNEMIEKLKKEIDLEYTEAVIAM 482
Query: 573 GISEKYEKDRKTLLELKSA--------KERLELEVRGYKLDL------ESTRRELETNKD 618
G+ E+ E R+ + S E++E + L S + +L+ +
Sbjct: 483 GLQERLENLREEFSKANSQDQLMHPVLMEKIEKLKDEFNKRLSRAPNYLSLKYKLDMLNE 542
Query: 619 QTIELRAKSKLEKAEGELTTVREENKKLKQGKIR 652
+ RAK+ EK E NKK K+ R
Sbjct: 543 FS---RAKALSEKKSKAEKLKAEINKKFKEVMDR 573
Score = 30.2 bits (68), Expect = 5.1
Identities = 71/340 (20%), Positives = 138/340 (40%), Gaps = 50/340 (14%)
Query: 369 EAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVA 428
E K +++ +T V L+ +V L++ + SK E E +KKE DL
Sbjct: 416 ERKVNMKKREAVKTPVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEY 475
Query: 429 TSS--------DLVATRHELEEVRSE-------LKEKENLEKTDDRKLEVCEVSKELEVL 473
T + L R E + S+ L EK +EK D + + L
Sbjct: 476 TEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEK--IEKLKDEFNKRLSRAPNYLSL 533
Query: 474 RGELEEQKTATKQWKKDWYQSVKERNAAVAELK-------QAQTENEALKEKLTSLEQEL 526
+ +L+ ++ +++ E+ + +LK + + +KEK+ +L+ E+
Sbjct: 534 KYKLDMLNEFSRA------KALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEV 587
Query: 527 KVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLL 586
S A++ + LD L+E +E M+KE+E V + G+ +
Sbjct: 588 ASSG---ASSGDELDDDLKE------KVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDT 638
Query: 587 ELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAE----GELTTVREE 642
++ L+ ++ E +++E ++ +L++K +L K E + V E+
Sbjct: 639 AEQTPPPNLQEKIESLN---EEINKKIE-RVIRSSDLKSKIELLKLEVAKASKTPDVTEK 694
Query: 643 NK--KLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVRE 680
K L+Q +I+ + + + K E+ E EL RE
Sbjct: 695 EKIEALEQ-QIKQKIAEALNSSELKEKFEELEAELAAARE 733
Score = 29.8 bits (67), Expect = 7.7
Identities = 41/175 (23%), Positives = 80/175 (45%), Gaps = 24/175 (13%)
Query: 381 RTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDL---VATR 437
+ ++ AL+A+V+ +S L +E+++++++E+ + E V S L T+
Sbjct: 577 KEKMEALKAEVA--SSGASSGDELDDDLKEKVEKMKKEI-ELELAGVLKSMGLEVIGVTK 633
Query: 438 HELEEVRS----ELKEK-ENLEKTDDRKLE----VCEVSKELEVLRGELEEQKTATKQWK 488
+ L+EK E+L + ++K+E ++ ++E+L+ E+ K K
Sbjct: 634 KNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDLKSKIELLKLEV------AKASK 687
Query: 489 KDWYQSVKERNAAVAELKQAQTE---NEALKEKLTSLEQELKVSEEALATAQNSL 540
++ A ++KQ E + LKEK LE EL + E A + SL
Sbjct: 688 TPDVTEKEKIEALEQQIKQKIAEALNSSELKEKFEELEAELAAARETAAESNGSL 742
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein
kinase; Provisional.
Length = 968
Score = 41.0 bits (96), Expect = 0.003
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 35/226 (15%)
Query: 1 KDVVKELRQKNVSASDFDIKRFIQQGNFGDIYLVEEKQSHNTFVMKKVLREKMPNTIERD 60
D++ L+++NV I +G G Y + ++ FV+K++ + E
Sbjct: 686 NDILSSLKEENV----------ISRGKKGASYKGKSIKNGMQFVVKEINDVNSIPSSEIA 735
Query: 61 IMVKSKCPYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELA 120
M K + P IV L + Y I EY+ G + +L N LS + R +A
Sbjct: 736 DMGKLQHPNIVKLIGLCRSEKGAYLIHEYIEGKNLSEVLRN-----LSWERRRKIAIGIA 790
Query: 121 QAVQYLH---GLGYVHRDIKPDNMLLSATG--HLKLTDFGSATQVDKNGRIKSIVPVGTP 175
+A+++LH V ++ P+ +++ HL+L+ G D I S
Sbjct: 791 KALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLRLSLPGLLC-TDTKCFISS------- 842
Query: 176 EYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGSTPFNYE 221
YVAPE E + T D++ G++ ELLTG +P + E
Sbjct: 843 AYVAPETRETKD-------ITEKSDIYGFGLILIELLTGKSPADAE 881
>gnl|CDD|149160 pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein. The sequences
featured in this family are similar to a region of human
TPR protein and to yeast myosin-like proteins 1 (MLP1)
and 2 (MLP2). These proteins share a number of features;
for example, they all have coiled-coil regions and all
three are associated with nuclear pores. TPR is thought
to be a component of nuclear pore complex- attached
intra-nuclear filaments, and is implicated in nuclear
protein import. Moreover, its N-terminal region is
involved in the activation of oncogenic kinases,
possibly by mediating the dimerisation of kinase domains
or by targeting these kinases to the nuclear pore
complex. MLP1 and MLP2 are involved in the process of
telomere length regulation, where they are thought to
interact with proteins such as Tel1p and modulate their
activity.
Length = 132
Score = 38.0 bits (89), Expect = 0.003
Identities = 24/125 (19%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 495 VKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTI 554
+E+++ AELK+ + E +EK+ L+++L+ E AQ + +L +H +
Sbjct: 2 EEEKSSLQAELKRLLEKKEDAEEKIQKLQEDLEEQAEIANEAQQKYERELVKHAEDIEEL 61
Query: 555 ESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELE 614
++++K++ + +K + +LK+ E + E+ + E ++ LE
Sbjct: 62 QALRKQLNEL-----------------KKEIAQLKAEAESAQAELSEAEESWEEQKKMLE 104
Query: 615 TNKDQ 619
+
Sbjct: 105 DELSE 109
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain
(CALCOCO1) like. Proteins found in this family are
similar to the coiled-coil transcriptional coactivator
protein coexpressed by Mus musculus (CoCoA/CALCOCO1).
This protein binds to a highly conserved N-terminal
domain of p160 coactivators, such as GRIP1, and thus
enhances transcriptional activation by a number of
nuclear receptors. CALCOCO1 has a central coiled-coil
region with three leucine zipper motifs, which is
required for its interaction with GRIP1 and may regulate
the autonomous transcriptional activation activity of
the C-terminal region.
Length = 546
Score = 40.4 bits (94), Expect = 0.004
Identities = 65/284 (22%), Positives = 138/284 (48%), Gaps = 30/284 (10%)
Query: 353 MRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEI 412
+RH +L +Q EA++S E +S R +LA +A+ +L L++K++E
Sbjct: 180 LRHSTEKTEELEEQHKEAQSSSESMSAERNALLAQRAENQQRILELEQDIQTLTQKKQEN 239
Query: 413 DRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEV 472
DR+ + E++L +L + L+++ + +++E + D +LE ++ ++L
Sbjct: 240 DRVLEGTQDIEAELERMKGEL---KQRLKKMTIQRRDEET--ERIDLQLENEQLHEDLRT 294
Query: 473 LRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEA 532
L+ LE + ++ R+ +AEL Q+ +L S + L++S+
Sbjct: 295 LQERLESSQQKAGLLGEELASLGSLRDHTIAELHQS---------RLESAQMSLQLSQLN 345
Query: 533 LATAQNSLDSKLREHQA-LSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSA 591
L L+E Q+ + E++++ E R++++S +E + + + L E +S
Sbjct: 346 L---------ALKEGQSQWAQERETLRQSAEADKDRIQKLS--AELLKLE-EWLQEERSQ 393
Query: 592 KERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGE 635
+E+LE+E+ K + R +L N+ + ELR+ ++ + E E
Sbjct: 394 REKLEVELGIEK---DCNRVQLSENRRELSELRSALRVLQKEKE 434
Score = 37.3 bits (86), Expect = 0.029
Identities = 60/310 (19%), Positives = 117/310 (37%), Gaps = 41/310 (13%)
Query: 504 ELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQ 563
E + AL+ ++ + ++ E AL + + +H+ ++ ESM E
Sbjct: 151 ERNDLMKKFLALEGDVSDMRSRIEQLETALRHSTEKTEELEEQHKEAQSSSESMSAERNA 210
Query: 564 SAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETN-KDQTIE 622
+ E + E+D +TL + K +R+ + + +LE + EL+ K TI+
Sbjct: 211 LLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKKMTIQ 270
Query: 623 LR----------------------AKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKD 660
R + +LE ++ + + EE L + + L
Sbjct: 271 RRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLRDHTIAELH-- 328
Query: 661 PQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTER 720
QS+LE A+ L + + N LK E S + + T S E K +
Sbjct: 329 ----QSRLESAQMSL-QLSQLNLALK-------EGQSQWAQERETLRQSAEADKDRIQKL 376
Query: 721 ESKLRSANEIIGEYETKITALESTMTR----SESYCKEMVEYLETLQKNNDILSHDNEQL 776
++L E + E ++ LE + + E L L+ +L + EQL
Sbjct: 377 SAELLKLEEWLQEERSQREKLEVELGIEKDCNRVQLSENRRELSELRSALRVLQKEKEQL 436
Query: 777 RKKNNDILSH 786
+++ ++L +
Sbjct: 437 QEEKQELLDY 446
Score = 36.1 bits (83), Expect = 0.073
Identities = 43/214 (20%), Positives = 88/214 (41%), Gaps = 13/214 (6%)
Query: 437 RHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVK 496
R++L + L+ + +D R + ++ L + EE + K+ +
Sbjct: 152 RNDLMKKFLALEG----DVSDMRS-RIEQLETALRHSTEKTEELEEQHKEAQSSSESMSA 206
Query: 497 ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIES 556
ERNA +A+ + Q L++ + +L Q+ + ++ L Q+ R L ++
Sbjct: 207 ERNALLAQRAENQQRILELEQDIQTLTQKKQENDRVLEGTQDIEAELERMKGELKQRLKK 266
Query: 557 MQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETN 616
M + ++ +E+ +D +TL E + ++ + L S R
Sbjct: 267 MTIQRRDEETERIDLQLENEQLHEDLRTLQERLESSQQKAGLLGEELASLGSLR------ 320
Query: 617 KDQTIELRAKSKLEKAEGELTTVREENKKLKQGK 650
D TI +S+LE A+ L + + N LK+G+
Sbjct: 321 -DHTIAELHQSRLESAQMSL-QLSQLNLALKEGQ 352
>gnl|CDD|200948 pfam00038, Filament, Intermediate filament protein.
Length = 312
Score = 39.5 bits (93), Expect = 0.004
Identities = 60/265 (22%), Positives = 113/265 (42%), Gaps = 51/265 (19%)
Query: 365 QQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKES 424
Q++ E + L++L+ R R LQ ++ +L+ K E+E+ LRQ
Sbjct: 54 QEIRELRKQLDELTNERAR---LQLEIDNLRLA---AEDFREKYEDEL-NLRQSA----- 101
Query: 425 DLVATSSDLVATRHELEEVRSELKEKENLEKTD-DRKLEVCEVSKELEVLRGELEEQ-KT 482
+D+V R +L+E L + D + K+E + +EL L+ EE+ +
Sbjct: 102 -----ENDIVGLRKDLDE--------ATLARVDLEMKIE--SLQEELAFLKKNHEEEVRE 146
Query: 483 ATKQWKKDWYQSV-----KERNAAVAELKQAQTENEALK----------EKLTSLEQELK 527
Q + + + A+AE++ AQ E A K KL L+Q
Sbjct: 147 LQSQIQGQVNVEMDAARKLDLTKALAEIR-AQYEELAEKNRQEAEEWYKSKLEELQQAAA 205
Query: 528 VSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE 587
+ +AL +A+ + R+ Q+L ++S++K+ ++ E+ E+YE + +
Sbjct: 206 RNGDALRSAKEEITELRRQIQSLEIELQSLKKQKASLERQLAEL---EERYELELADYQD 262
Query: 588 LKSAKERLELEVRGYKLDLESTRRE 612
S E E++ K ++ RE
Sbjct: 263 TISELEE---ELQQLKAEMARQLRE 284
Score = 30.6 bits (70), Expect = 2.6
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 569 REMSGISEKYEKD----RKTLLELKSAKERLELEVRGYKLDLESTRRELET--NKDQTIE 622
E S + YE++ RK L EL + + RL+LE+ +L E R + E N Q+ E
Sbjct: 43 AEPSRLYSLYEQEIRELRKQLDELTNERARLQLEIDNLRLAAEDFREKYEDELNLRQSAE 102
>gnl|CDD|236892 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 40.3 bits (95), Expect = 0.004
Identities = 44/217 (20%), Positives = 86/217 (39%), Gaps = 50/217 (23%)
Query: 441 EEVRSELKE-KENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERN 499
+V+++L + + KL ++ + L +L +++ QK T+Q K+ Q
Sbjct: 39 ADVQAQLDALNKQKLLEAEDKLVQQDLEQTLALL-DKIDRQKEETEQLKQQLAQ------ 91
Query: 500 AAVAELKQAQTENEALKE--------------------KLTSLEQELKVSEEALATAQNS 539
A A+L+QAQ E EALK+ +L +L+ ++ LA NS
Sbjct: 92 -APAKLRQAQAELEALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEY-NS 149
Query: 540 LDSKLREHQALSNTIESMQKEMEQSAVRVREMSGI-------SEKYEKDRKT-------L 585
L+ E Q + ++ R++++ + + ++ L
Sbjct: 150 QLVSLQ------TQPERAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQAL 203
Query: 586 LELKSAKERLELEVRGYKLDLESTRRELETNKDQTIE 622
L ++ +R LE DL +R+ T + Q +E
Sbjct: 204 LNAQNDLQRKSLEGNTQLQDLLQKQRDYLTARIQRLE 240
Score = 31.8 bits (73), Expect = 1.8
Identities = 43/175 (24%), Positives = 69/175 (39%), Gaps = 31/175 (17%)
Query: 387 LQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSE 446
L+A+ +QQDL +LL K IDR ++E L + A +L + ++E
Sbjct: 54 LEAEDKLVQQDLEQTLALLDK----IDRQKEETE----QLKQQLAQAPA---KLRQAQAE 102
Query: 447 LKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDW---------YQSVKE 497
L E L+ +D + + L L L + + + D Q+ E
Sbjct: 103 L---EALKDDNDEETRETLSTLSLRQLESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPE 159
Query: 498 RNAAV--AELKQAQTENEALK------EKLTSLEQELKVSEEALATAQNSLDSKL 544
R A A ++ Q LK + L ++ L +E+AL AQN L K
Sbjct: 160 RAQAALYANSQRLQQIRNLLKGGKVGGKALRPSQRVLLQAEQALLNAQNDLQRKS 214
Score = 31.0 bits (71), Expect = 2.8
Identities = 36/170 (21%), Positives = 74/170 (43%), Gaps = 38/170 (22%)
Query: 605 DLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPA 664
LE+ + ++ + +QT+ L L+K + +EE ++LKQ +L A
Sbjct: 53 LLEAEDKLVQQDLEQTLAL-----LDKID----RQKEETEQLKQ---QL--------AQA 92
Query: 665 QSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKL 724
+KL +A+ EL ++++N + TL SL L+S + +L
Sbjct: 93 PAKLRQAQAELEALKDDNDEETRETLSTL---------------SLRQLESRLAQTLDQL 137
Query: 725 RSANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNE 774
++A + EY +++ +L+ T+ E + + LQ+ ++L
Sbjct: 138 QNAQNDLAEYNSQLVSLQ---TQPERAQAALYANSQRLQQIRNLLKGGKV 184
Score = 30.7 bits (70), Expect = 4.4
Identities = 35/209 (16%), Positives = 83/209 (39%), Gaps = 39/209 (18%)
Query: 361 LQLLQQLAEAKASLEDL-----------SCSRTRVLALQAQ-VSSLQQDLTSHTSLLSKK 408
L LL ++ K E L ++ + AL+ ++ L++ + L +
Sbjct: 69 LALLDKIDRQKEETEQLKQQLAQAPAKLRQAQAELEALKDDNDEETRETLSTLS--LRQL 126
Query: 409 EEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKE-------------KENLEK 455
E + + ++ ++DL +S LV+ + + E ++ L +
Sbjct: 127 ESRLAQTLDQLQNAQNDLAEYNSQLVSLQTQPERAQAALYANSQRLQQIRNLLKGGKVGG 186
Query: 456 TDDRKLEVCEVSKELEVLRGELEEQKTATK-----QWKKDWYQSVKERNAAVAELKQAQT 510
R + + E +L + + Q+ + + Q D Q K+R+ A +++ +
Sbjct: 187 KALRPSQRVLLQAEQALLNAQNDLQRKSLEGNTQLQ---DLLQ--KQRDYLTARIQRLEH 241
Query: 511 ENEALKEKLTSLEQELKVSEEALATAQNS 539
+ + L+E + + L +SE+ + AQ+
Sbjct: 242 QLQLLQEAIN--SKRLTLSEKTVQEAQSQ 268
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 39.9 bits (94), Expect = 0.005
Identities = 47/238 (19%), Positives = 89/238 (37%), Gaps = 33/238 (13%)
Query: 431 SDLVATRHELEEVR-SELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTAT----- 484
+++ HEL V +LKE+ + E+ + + ++S+ L+ LR L +
Sbjct: 19 DEVLEALHELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKK 78
Query: 485 ---KQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLD 541
K ++ +E E+K+ + E L+ ++ LEQE++ E + D
Sbjct: 79 VSVKSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEIERLEPWG-----NFD 133
Query: 542 SKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRG 601
L V E K E D + + + + K + + V
Sbjct: 134 LDLSLLLGFKYVS--------VFVGTVPEDKLEELKLESDVENVEYISTDKGYVYVVVVV 185
Query: 602 YKLDLESTRRELETNKDQTIEL-----------RAKSKLEKAEGELTTVREENKKLKQ 648
K + EL+ + +EL K +LE+ E E ++ EE K+L +
Sbjct: 186 LKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAK 243
Score = 31.8 bits (73), Expect = 1.5
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 4/78 (5%)
Query: 437 RHELEEVRSELKEKENL-EKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSV 495
+ E + EL+E+ E + K E+ E+ KE E L EL+E + Y+ +
Sbjct: 199 KLGFERL--ELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYL 256
Query: 496 K-ERNAAVAELKQAQTEN 512
+ E A A K +T+
Sbjct: 257 EIELERAEALSKFLKTDK 274
Score = 29.5 bits (67), Expect = 7.6
Identities = 20/108 (18%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
Query: 550 LSNTIESMQKEMEQSAVRVREMS--GISEKYEKDRKTLLELKSAKERLE--LEVRGYKLD 605
+E++ E V + ++ +E+ K R L +L A ++L L +
Sbjct: 18 KDEVLEALH---ELGVVHIEDLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLRE 74
Query: 606 LESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRL 653
+ + + + +LEK E E+ + EE +L+ L
Sbjct: 75 EKKKVSVKSLEE---LIKDVEEELEKIEKEIKELEEEISELENEIKEL 119
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein. Members of this
protein family have a signal peptide, a strongly
conserved SH3 domain, a variable region, and then a
C-terminal hydrophobic transmembrane alpha helix region.
Length = 198
Score = 38.5 bits (90), Expect = 0.005
Identities = 23/110 (20%), Positives = 50/110 (45%)
Query: 505 LKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQS 564
L + ++ + +E+L L+QEL +E LA Q L +E+Q L + +++ E+E+
Sbjct: 54 LSRYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERL 113
Query: 565 AVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELE 614
+ + +S + + EL+ L+ E + + E + +
Sbjct: 114 QKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 37.7 bits (88), Expect = 0.010
Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALK---EKLTS 521
E+ +EL L+ EL E + + +++ + +E + AEL++ Q E +K
Sbjct: 70 ELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLSANAIE 129
Query: 522 LEQELKVSEEALATAQNSLDSKLREHQALSNTIE 555
L++E + E LA + ++ E++ L +
Sbjct: 130 LDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 36.9 bits (86), Expect = 0.017
Identities = 30/114 (26%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 431 SDLVATRHELEEVRSELKE-KENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKK 489
SD + R L E++ EL E +E L + + ++ E+ +E + L+ EL + ++ +K
Sbjct: 59 SDTPSARERLPELQQELAELQEELAELQE---QLAELQQENQELKQELSTLEAELERLQK 115
Query: 490 DWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSK 543
+ +K+ +A EL + EN L+E+L L+QE + E Q + +
Sbjct: 116 E-LARIKQLSANAIELDE---ENRELREELAELKQENEALEAENERLQENEQRR 165
Score = 36.9 bits (86), Expect = 0.022
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 15/108 (13%)
Query: 494 SVKERNAAV-AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSN 552
S +ER + EL + Q E L+E+L L+QE + ++ L+T + L
Sbjct: 63 SARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAEL------------ 110
Query: 553 TIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVR 600
E +QKE+ + + E+ + R+ L ELK E LE E
Sbjct: 111 --ERLQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENE 156
Score = 36.5 bits (85), Expect = 0.026
Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 381 RTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHEL 440
R R+ LQ +++ LQ++L + +E++ L+QE + + +L ++L + EL
Sbjct: 65 RERLPELQQELAELQEELA-------ELQEQLAELQQENQELKQELSTLEAELERLQKEL 117
Query: 441 EEVRSELKEKENLEKTDDR-KLEVCEVSKELEVLRGELEE-QKTATKQW 487
++ L++ + + E+ E+ +E E L E E Q+ ++W
Sbjct: 118 ARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQRRW 166
Score = 33.4 bits (77), Expect = 0.26
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 15/112 (13%)
Query: 415 LRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLR 474
R+ + + + +L +L + +L E++ E +E + T + ELE L+
Sbjct: 64 ARERLPELQQELAELQEELAELQEQLAELQQENQELKQELST---------LEAELERLQ 114
Query: 475 GELEEQKTATKQWKKDWYQSVKERNA-AVAELKQAQTENEALKEKLTSLEQE 525
EL K + + E N EL + + ENEAL+ + L++
Sbjct: 115 KELARIKQLSAN-----AIELDEENRELREELAELKQENEALEAENERLQEN 161
Score = 30.7 bits (70), Expect = 1.9
Identities = 23/119 (19%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 663 PAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERES 722
A+ +L + + EL ++EE +L+ L+ L+ + S
Sbjct: 63 SARERLPELQQELAELQEELAELQEQ------------------LAELQQENQELKQELS 104
Query: 723 KLRSANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNN 781
L + E + + +I L + + +E+ E L L++ N+ L +NE+L++
Sbjct: 105 TLEAELERLQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQENEQ 163
Score = 28.8 bits (65), Expect = 8.2
Identities = 21/100 (21%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 561 MEQSAVRVR------EMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELE 614
+ + R R E++ + E+ + ++ L EL+ + L+ E+ + +LE ++EL
Sbjct: 59 SDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELA 118
Query: 615 TNKDQTIE-LRAKSKLEKAEGELTTVREENKKLKQGKIRL 653
K + + + + EL +++EN+ L+ RL
Sbjct: 119 RIKQLSANAIELDEENRELREELAELKQENEALEAENERL 158
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 39.5 bits (93), Expect = 0.006
Identities = 50/231 (21%), Positives = 106/231 (45%), Gaps = 37/231 (16%)
Query: 435 ATRHELEEVRSELKEKENLEKTDDRKLEVCEVSK------ELEVLRGELEEQK---TATK 485
R ELE+++ KE+E ++ D + ++ E+ + E E ELEE++ + ++
Sbjct: 168 QARRELEDLQE--KERERAQRADLLQFQLEELEELNLQPGEDE----ELEEERKRLSNSE 221
Query: 486 QWKKDWYQSVK------ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNS 539
+ + +++ + +A++ L +A E L+ + +L E L A
Sbjct: 222 KLAEAIQNALELLSGEDDTVSALSLLGRA----LEALEDLSEYDGKLSELAELLEEALYE 277
Query: 540 LDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE-LKSAKERLELE 598
L+ E +A + +E +E+ R+ + ++ KY + LLE L KE L
Sbjct: 278 LEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELA-- 335
Query: 599 VRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREEN-KKLKQ 648
L+++ LE + + +L+A +L +A L+ +R++ K+L++
Sbjct: 336 ------QLDNSEESLEALEKEVKKLKA--ELLEAAEALSAIRKKAAKELEK 378
Score = 29.9 bits (68), Expect = 6.1
Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 20/97 (20%)
Query: 359 DRLQLLQQLAEA-KASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQ 417
+RL L+ LA ++EDL L ++ L + L E+E+ +L+
Sbjct: 304 ERLFALKSLARKYGVTIEDL-------LEYLDKIKEELAQLDNSEESLEALEKEVKKLKA 356
Query: 418 EMVKKESDLVATSSDLVATRHEL-----EEVRSELKE 449
E+++ + L A R + +EV +ELK
Sbjct: 357 ELLEA-------AEALSAIRKKAAKELEKEVTAELKA 386
Score = 29.5 bits (67), Expect = 8.3
Identities = 53/261 (20%), Positives = 98/261 (37%), Gaps = 42/261 (16%)
Query: 475 GELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL-KVS---- 529
G E + A ++ + W Q+ +E +L++ + E + L +EL +++
Sbjct: 150 GLEELAQEAYQEAYQAWKQARRELE----DLQEKERERAQRADLLQFQLEELEELNLQPG 205
Query: 530 -EEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAV---------RVREMSGISEKYE 579
+E L + L + + +A+ N +E + E + + + ++S K
Sbjct: 206 EDEELEEERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEALEDLSEYDGKLS 265
Query: 580 KDRKTLLELKSAKERLELEVRGYKLDLESTRRELE------------TNK-----DQTIE 622
+ + L E E E+R Y +LE LE K + +E
Sbjct: 266 ELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLE 325
Query: 623 LRAKSK-----LEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKA-EGELT 676
K K L+ +E L + +E KKLK + +L + A +LEK EL
Sbjct: 326 YLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVTAELK 385
Query: 677 TVREENKKLKVSFFFTLESNS 697
+ E + V ES +
Sbjct: 386 ALAMEKARFTVELKPLEESPT 406
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 39.8 bits (93), Expect = 0.006
Identities = 49/232 (21%), Positives = 90/232 (38%), Gaps = 26/232 (11%)
Query: 456 TDDRKLEVCEVSKELEVLRGELEE---QKTATKQWKKDWYQSVKERNAA--VAELKQAQT 510
DD +V + ++L+ R ELE + A + + + Y+ L+ AQT
Sbjct: 218 DDDELTDVADALEQLDEYRDELERLEALERALRNFLQR-YRRYARTMLRRRATRLRSAQT 276
Query: 511 ENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVRE 570
+ + L L EL+ + E ++ RE AL +E++Q
Sbjct: 277 QYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGS---------P 327
Query: 571 MSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLE 630
+E+ E+ R L++A +R + LE RR L+ +L+
Sbjct: 328 AYQDAEELERARADAEALQAAAADARQAIREAESRLEEERRRLDE---------EAGRLD 378
Query: 631 KAEGELTTVREE-NKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREE 681
AE EL RE+ + ++ + ++ D A +L + G L R++
Sbjct: 379 DAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQEL-QELGALDARRQD 429
Score = 35.9 bits (83), Expect = 0.100
Identities = 49/292 (16%), Positives = 92/292 (31%), Gaps = 29/292 (9%)
Query: 351 EDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEE 410
E R RL+ LQ + A E+L +R ALQA + +Q + S L EE
Sbjct: 310 EREADALRTRLEALQG-SPAYQDAEELERARADAEALQAAAADARQAIREAESRL---EE 365
Query: 411 EIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKL--EVCEVSK 468
E RL +E + + + E + + E+ +
Sbjct: 366 ERRRLDEEAGRLDDAERELRAAREQLARAAERAGLSPAHTAEPDAALAAQELQELGALDA 425
Query: 469 ELEVLRGELEEQKTATKQWK-----KDWYQSVKERNAAVAELKQAQTENEALKEKLTSLE 523
+ + ++ + D + +AA + E L
Sbjct: 426 RRQDADRVIAQRSEQVALLRRRDDVADRAE---ATHAAARARRDELDEEAEQAAARAELA 482
Query: 524 QELKVSEEALATAQNSLDSKLREHQALS-NTIESMQKEMEQSAVRVREMSGISEKYEKDR 582
E E A ++ ++LRE L+ + +++ ++ + +
Sbjct: 483 DEAVHREGARLAWVDAWQAQLRELTILAVDDQPGALADLDSWDALLQGEAPVRVAVY--- 539
Query: 583 KTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRA-KSKLEKAE 633
SA + L E+ + L LE +D LR + +LE+
Sbjct: 540 -------SAVQPLADELTRERAALRLAEEVLEEERD---ALRTERERLEQGT 581
Score = 33.6 bits (77), Expect = 0.55
Identities = 39/242 (16%), Positives = 73/242 (30%), Gaps = 26/242 (10%)
Query: 408 KEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVS 467
+ I L + + +L + +L A + EL + E
Sbjct: 740 RLRRIAELDARLAAVDDELAELARELRALGARQRALADELAGAPSDRSLRAAHRRAAEAE 799
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTEN------EALK----- 516
++ E EL W Q+ +E A+L + ALK
Sbjct: 800 RQAESAERELARAARKAAAAAAAWKQARRELERDAADLDLPTDPDALEAVGLALKRFGDH 859
Query: 517 -EKLTSLEQELKVSEEALATAQNSLD---SKLREHQALSNTIESMQKEMEQSAVRVREM- 571
L +EL+ + A + S RE + + E E++++R+R +
Sbjct: 860 LHTLEVAVRELRHAATRAAEQRARAARAESDAREAAEDAAEARA---EAEEASLRLRTLE 916
Query: 572 SGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEK 631
+ ++ R L E ++A E+ L T ++ K
Sbjct: 917 ESVGAMVDEIRARLAETRAALASGGRELP-------RLAEALATAEEARGRAEEKRAEAD 969
Query: 632 AE 633
A
Sbjct: 970 AT 971
Score = 32.5 bits (74), Expect = 1.1
Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 10/173 (5%)
Query: 513 EALKEKLTSLEQEL--KVSE--EALATAQNSLDSKLREHQALSNTIESMQKEME-QSAVR 567
+AL E L L+ + V++ E L ++ L+ +AL N ++ ++ R
Sbjct: 208 DALTEALPPLDDDELTDVADALEQLDEYRDELERLEALERALRNFLQRYRRYARTMLRRR 267
Query: 568 VREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKS 627
+ +Y++ + L + E E R E+ RE + + + L+
Sbjct: 268 ATRLRSAQTQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSP 327
Query: 628 KLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVRE 680
+ AE EL R + + L+ + + A+S+LE+ L
Sbjct: 328 AYQDAE-ELERARADAEALQA----AAADARQAIREAESRLEEERRRLDEEAG 375
>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein. This entry is a highly
conserved protein present in eukaryotes.
Length = 680
Score = 39.5 bits (92), Expect = 0.007
Identities = 56/244 (22%), Positives = 107/244 (43%), Gaps = 45/244 (18%)
Query: 417 QEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGE 476
+ + E D+ ++L R E+R+++ +LE++ K ++ ++ KE ++L+ +
Sbjct: 406 SAIERLEQDIKKLQAELQQARQNESELRNQISLLTSLERS--LKSDLGQLKKENDMLQTK 463
Query: 477 LEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATA 536
L +A KQ K QS+++R LK ++ ++ EK + E++ K EE A
Sbjct: 464 LNSMVSA-KQKDKQSMQSMEKR------LK-SEADSRVNAEKQLAEEKKRKKEEEETAAR 515
Query: 537 QNSLDSKLREH---------QALSNTIESMQKEMEQSAVRVREMSG-ISE--KY---EKD 581
+ + RE Q L I+ ++ +++ R + E KY EK+
Sbjct: 516 AAAQAAASREECAESLKQAKQDLEMEIKKLEHDLKLKEEECRMLEKEAQELRKYQESEKE 575
Query: 582 RKTLLELKSA--------KERLELEVRGYKLDLES----TRRELET------NKDQTI-E 622
+ L+ A + L E R KLDL S +R+LE ++ I +
Sbjct: 576 TEVLMSALQAMQDKNLMLENSLSAETR-LKLDLFSALGDVKRQLEIAHGAIYKREAEIVD 634
Query: 623 LRAK 626
L++K
Sbjct: 635 LKSK 638
Score = 38.4 bits (89), Expect = 0.017
Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 16/200 (8%)
Query: 497 ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTI-- 554
ER+ ++L Q + EN+ L+ KL S+ + ++++ + + L S+ +
Sbjct: 443 ERSLK-SDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSRVNAEKQLAE 501
Query: 555 ESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELE 614
E +K+ E+ + + E LK AK+ LE+E++ + DL+ E
Sbjct: 502 EKKRKKEEEETAARAAAQAAASREECAES----LKQAKQDLEMEIKKLEHDLKLKEEECR 557
Query: 615 TNKDQTIELRAKSKLEKAEGE-----LTTVREENKKLKQ---GKIRLVYSLFKDPQPAQS 666
+ + ELR + EK E E L ++++N L+ + RL LF +
Sbjct: 558 MLEKEAQELRKYQESEK-ETEVLMSALQAMQDKNLMLENSLSAETRLKLDLFSALGDVKR 616
Query: 667 KLEKAEGELTTVREENKKLK 686
+LE A G + E LK
Sbjct: 617 QLEIAHGAIYKREAEIVDLK 636
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 39.5 bits (92), Expect = 0.007
Identities = 48/222 (21%), Positives = 87/222 (39%), Gaps = 13/222 (5%)
Query: 474 RGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEAL 533
R EL K+ Q + + Q E A EL++ + E+ EL+V +AL
Sbjct: 60 RAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKAL 119
Query: 534 ----ATAQNSLDSKLREHQALSNTIES----MQKEMEQSAVRVREM-SGISEKYEKDRKT 584
A+N E + L + +++ +Q E E +E S I + +
Sbjct: 120 EELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKNDLSEMQCR 179
Query: 585 LLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENK 644
+ + LE E+ + LE ++EL + + L ++ EE
Sbjct: 180 AQNADTELKLLESELEELREQLEECQKELAEAEKKLQSLTSEQASSADNSVKIKHLEEEL 239
Query: 645 KLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLK 686
K + +V S+ + ++ + E EL +REEN+KL+
Sbjct: 240 KRYEQDAEVVKSMKEQ----LLQIPELERELAALREENRKLR 277
Score = 38.8 bits (90), Expect = 0.012
Identities = 60/322 (18%), Positives = 129/322 (40%), Gaps = 28/322 (8%)
Query: 351 EDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLS---- 406
+R K D L ++L + ++ LE R ++ L+ + L+ +L S SLL
Sbjct: 274 RKLRSMKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLENELKSWKSLLQDIGL 333
Query: 407 --KKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVC 464
+ +++ R + +E L + + ++ +LE +L + +K LE+
Sbjct: 334 NLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQL--QLERQKAVSEILELK 391
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
+ + L+ L L+ + T + + + + + E + + L ++L E
Sbjct: 392 KKLEALKALVRRLQRRLTLVTKERDGLRAILNSYDKELTET----SVSGQLMKRLEEAED 447
Query: 525 ELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEM----EQSAVRVREMSGISEKYEK 580
++ + LA +N L + + +++ E+ EQ R +S + E
Sbjct: 448 LVQKVQSHLAKMENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVSNERLLSFVKEATNA 507
Query: 581 DRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQT------------IELRAKSK 628
R + L+ ++RL E ++ LE + + N +T E AK
Sbjct: 508 LRLKIETLERERDRLRQEKSLLEMKLEHLCLQGDYNASRTKVLHMSLNPASEAEQIAKQT 567
Query: 629 LEKAEGELTTVREENKKLKQGK 650
+E + E ++E + L++GK
Sbjct: 568 IEALQAECEKLKERLQALEEGK 589
Score = 38.8 bits (90), Expect = 0.012
Identities = 84/440 (19%), Positives = 166/440 (37%), Gaps = 42/440 (9%)
Query: 357 KRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLR 416
+ + + QL EAK E +S + + +Q + + +L S L + E+++ +
Sbjct: 149 LKLQNEKEDQLKEAK---ESISRIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQ 205
Query: 417 QEMVKKESDL-------VATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKE 469
+E+ + E L +++ + V +H EE++ ++ E ++ ++ L++ E+ +E
Sbjct: 206 KELAEAEKKLQSLTSEQASSADNSVKIKHLEEELKRYEQDAEVVKSMKEQLLQIPELERE 265
Query: 470 LEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVS 529
L LR E + ++ + + + +L+ E ++EKL LE E +
Sbjct: 266 LAALREENRKLRSM--------KEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKL 317
Query: 530 EEALATAQNSLDS---KLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLL 586
E L + ++ L LR LS I +Q E Q + +S +
Sbjct: 318 ENELKSWKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSIS----------SSAK 367
Query: 587 ELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKL 646
+L++ ++L+LE + ++ +++LE K + + LT V +E L
Sbjct: 368 QLETTLQQLQLERQKAVSEILELKKKLEALKALV---------RRLQRRLTLVTKERDGL 418
Query: 647 KQ--GKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPN 704
+ + +LE+AE + V+ K++ E N
Sbjct: 419 RAILNSYDKELTETSVSGQLMKRLEEAEDLVQKVQSHLAKMENQLSELEEDVGQQKDRNN 478
Query: 705 TFLSSLEDLKSNYTERESKLRSANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQK 764
T + ++ LK E L E KI LE R + LE L
Sbjct: 479 TLETEIKLLKEQLVSNERLLSFVKEATNALRLKIETLERERDRLRQEKSLLEMKLEHLCL 538
Query: 765 NNDILSHDNEQLRKKNNDIL 784
D + + L N
Sbjct: 539 QGDYNASRTKVLHMSLNPAS 558
Score = 38.4 bits (89), Expect = 0.016
Identities = 84/397 (21%), Positives = 166/397 (41%), Gaps = 38/397 (9%)
Query: 403 SLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLE 462
S+ + E+ R + ++++ E++L+ + + ELE S L E N E+ DR LE
Sbjct: 54 SMTLLQRAELIRSKSKLIQLENELMQKELEHKRAQIELERKASTLAE--NYERELDRNLE 111
Query: 463 VCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSL 522
+ K LE L + E E A E K + + +A KL
Sbjct: 112 LEVRLKALEELEKKAE-----------------NEAAEAEEEAKLLKDKLDAESLKL-QN 153
Query: 523 EQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGI--SEKYEK 580
E+E ++ E + + + + L E Q + ++ K +E +RE E E
Sbjct: 154 EKEDQLKEAKESIS--RIKNDLSEMQCRAQNADTELKLLESELEELREQLEECQKELAEA 211
Query: 581 DRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVR 640
++K + V+ L+ E R E + ++++ + ++ + E EL +R
Sbjct: 212 EKKLQSLTSEQASSADNSVKIKHLEEELKRYEQDAEVVKSMKEQ-LLQIPELERELAALR 270
Query: 641 EENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEG---ELTTVREENKKLKVSFFFTLESNS 697
EEN+KL+ L ++ + QS+LE+ E +L + E +KL+ E S
Sbjct: 271 EENRKLRS-MKEDNELLKEELEDLQSRLERFEKMREKLADLELEKEKLEN------ELKS 323
Query: 698 LFWLDPNTF--LSSLEDLKSNYTERESKLRSANEIIGEYETKITALESTMTRSESYCKEM 755
L + L + +DL +++ E G + LE+T+ + + ++
Sbjct: 324 WKSLLQDIGLNLRTPDDLSRRIVVLQNEELQLKEKNGSISSSAKQLETTLQQLQLERQKA 383
Query: 756 VEYLETLQKNNDILSHDNEQLRKKNNDILSHDNEQLR 792
V + L+K + L +L+++ +++ + + LR
Sbjct: 384 VSEILELKKKLEALKALVRRLQRRLT-LVTKERDGLR 419
Score = 38.4 bits (89), Expect = 0.019
Identities = 42/202 (20%), Positives = 86/202 (42%), Gaps = 14/202 (6%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVK 421
QL+++L EA+ ++ + ++ Q+S L++D+ + E EI L++++V
Sbjct: 437 QLMKRLEEAEDLVQKVQSHL---AKMENQLSELEEDVGQQKDRNNTLETEIKLLKEQLVS 493
Query: 422 KESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQK 481
E L A R ++E + E ++ + E+ E L+G+ +
Sbjct: 494 NERLLSFVKEATNALRLKIETLERERDRLR-------QEKSLLEMKLEHLCLQGDYNASR 546
Query: 482 TATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLD 541
T + + + A ++ Q E E LKE+L +LE+ + + +
Sbjct: 547 TKVLHMSLN--PASEAEQIAKQTIEALQAECEKLKERLQALEEGKSQPGDLEKAVGSHIS 604
Query: 542 SKLREHQALSNTIESMQKEMEQ 563
SK E L +ES +K+ ++
Sbjct: 605 SK--EIAQLKKQVESAEKKNQR 624
>gnl|CDD|218661 pfam05622, HOOK, HOOK protein. This family consists of several
HOOK1, 2 and 3 proteins from different eukaryotic
organisms. The different members of the human gene
family are HOOK1, HOOK2 and HOOK3. Different domains
have been identified in the three human HOOK proteins,
and it was demonstrated that the highly conserved
NH2-domain mediates attachment to microtubules, whereas
the central coiled-coil motif mediates homodimerisation
and the more divergent C-terminal domains are involved
in binding to specific organelles (organelle-binding
domains). It has been demonstrated that endogenous HOOK3
binds to Golgi membranes, whereas both HOOK1 and HOOK2
are localised to discrete but unidentified cellular
structures. In mice the Hook1 gene is predominantly
expressed in the testis. Hook1 function is necessary for
the correct positioning of microtubular structures
within the haploid germ cell. Disruption of Hook1
function in mice causes abnormal sperm head shape and
fragile attachment of the flagellum to the sperm head.
Length = 713
Score = 39.4 bits (92), Expect = 0.007
Identities = 63/250 (25%), Positives = 120/250 (48%), Gaps = 22/250 (8%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVK 421
QL + L + K + E+ R L QV LQ++ SL E ++L++ + +
Sbjct: 173 QLKKALEDLKEAQEEKDELAQRCHELDKQVLLLQEE---KNSLQQ----ENEKLQERLAQ 225
Query: 422 KESDLVATSSDLVATRHELEEVRSELKEKENLE---KTDDRKLEVCEVSKELEVLRGELE 478
E + + L + ++ L + + E ++EN DD +++ E+ KEL L+ +
Sbjct: 226 LEGSSLGPNQ-LGSKKYNLLQSQLEQLQEENFRLEAARDDYRIKCEELEKELAELQHRND 284
Query: 479 EQKTATK--QWKKDWYQSVKERNAAVAELK-QAQTENEALKEKLTSLEQELKVSEEALAT 535
E + Q KD ++E + +L+ Q +T + L E L L +++K+ EE A
Sbjct: 285 ELTSLAAESQALKDEIDVLRESSDKAKKLEAQVETYKKKL-EDLNDLRRQVKLLEERNAM 343
Query: 536 -AQN--SLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE----L 588
QN L+ +L++ A +E+ ++++++ ++ E S ++K E + K L E L
Sbjct: 344 YMQNTVQLEEELKKANAARGQLETYKRQVQELHAKLSEESKKADKLEFEYKRLEEKLEAL 403
Query: 589 KSAKERLELE 598
+ KERL E
Sbjct: 404 QKEKERLLAE 413
>gnl|CDD|114219 pfam05483, SCP-1, Synaptonemal complex protein 1 (SCP-1).
Synaptonemal complex protein 1 (SCP-1) is the major
component of the transverse filaments of the
synaptonemal complex. Synaptonemal complexes are
structures that are formed between homologous
chromosomes during meiotic prophase.
Length = 787
Score = 39.3 bits (91), Expect = 0.007
Identities = 65/347 (18%), Positives = 142/347 (40%), Gaps = 27/347 (7%)
Query: 363 LLQQLAEAKASLEDLSCSRTR----VLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQE 418
+ Q E +A +E+L+ ++ V +A SL++ L + L K E+++ + E
Sbjct: 326 ICQLTEEKEAQMEELNKAKAAHSFVVTEFEATTCSLEELLRTEQQRLEKNEDQLKIITME 385
Query: 419 MVKKESDLVATSSDLVATRHELEEVRSELKEKENL-----------EKTDDRKLEVCEVS 467
+ KK S+L + ELEE++ L E E L E+ ++ E+ +
Sbjct: 386 LQKKSSELEEMTKFKNNKEVELEELKKILAEDEKLLDEKKQFEKIAEELKGKEQELIFLL 445
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQT-----------ENEALK 516
+ E +LE Q TA K ++ + + V++ + + K EN+ L
Sbjct: 446 QAREKEIHDLEIQLTAIKTSEEHYLKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELT 505
Query: 517 EKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSG-IS 575
++ + + ELK +E + + + L++ + L +++ E+E + +
Sbjct: 506 QEASDMTLELKKHQEDIINCKKQEERMLKQIENLEEKEMNLRDELESVREEFIQKGDEVK 565
Query: 576 EKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGE 635
K +K + ++ + E +++ + + ++++E EL ++K K +G
Sbjct: 566 CKLDKSEENARSIEYEVLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGS 625
Query: 636 LTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREEN 682
+ ++K K+ L + K + E E + EE
Sbjct: 626 AENKQLNAYEIKVNKLELELASAKQKFEEIIDNYQKEIEDKKISEEK 672
Score = 38.2 bits (88), Expect = 0.022
Identities = 71/320 (22%), Positives = 138/320 (43%), Gaps = 59/320 (18%)
Query: 364 LQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTS----LLSKKEEEIDRLRQE- 418
L+++ + K LE + A ++ ++LT S L K +E+I +++
Sbjct: 470 LKEVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQE 529
Query: 419 --MVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGE 476
M+K+ +L +L R ELE VR E +K + K K E S E EVL+ E
Sbjct: 530 ERMLKQIENLEEKEMNL---RDELESVREEFIQKGDEVKCKLDKSEENARSIEYEVLKKE 586
Query: 477 LEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATA 536
+Q + + + ++ +N + EL Q EN+ALK+K ++ ++L E +
Sbjct: 587 --KQMKILENKCNNLKKQIENKNKNIEELHQ---ENKALKKKGSAENKQLNAYEIKVNKL 641
Query: 537 QNSLDSKLREHQALSNTI-----------ESMQKEMEQSAV------------------R 567
+ L S ++ + + + E + +E+E++ +
Sbjct: 642 ELELASAKQKFEEIIDNYQKEIEDKKISEEKLLEEVEKAKAIADEAVKLQKEIDKRCQHK 701
Query: 568 VREMSGISEKYEKDRKTLLELK---------------SAKERLELEVRGYKLDLESTRRE 612
+ EM + EK++ ++E + SAK LE+E+ K +L S +++
Sbjct: 702 IAEMVALMEKHKHQYDKIIEERDSELGLYKNKEQEQSSAKAALEIELSNIKAELLSLKKQ 761
Query: 613 LETNKDQTIELRAKSKLEKA 632
LE K++ +L+ ++K A
Sbjct: 762 LEIEKEEKEKLKMEAKENTA 781
Score = 33.5 bits (76), Expect = 0.49
Identities = 83/411 (20%), Positives = 170/411 (41%), Gaps = 47/411 (11%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELK-EKENLEKTDDRKLEV 463
++ KE+++ L ++ +KE+ + + L +R + ++ + K + ENL++ ++K +
Sbjct: 235 INDKEKQVSLLLIQITEKENKMKDLTFLLEESRDKANQLEEKTKLQDENLKELIEKKDHL 294
Query: 464 CEVSKELEVLRGELEEQKTATKQWKKDW-------YQSVKERNAAVAELKQAQTENE--- 513
+KELE ++ L+ + K ++D Q +E+ A + EL +A+ +
Sbjct: 295 ---TKELEDIKMSLQRSMSTQKALEEDLQIATKTICQLTEEKEAQMEELNKAKAAHSFVV 351
Query: 514 -ALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMS 572
+ SLE+ L+ ++ L ++ L E Q S+ +E M K V + E+
Sbjct: 352 TEFEATTCSLEELLRTEQQRLEKNEDQLKIITMELQKKSSELEEMTKFKNNKEVELEELK 411
Query: 573 GISEKYEK-------DRKTLLELKSAKERL-------ELEVRGYKLDLESTRRELETNKD 618
I + EK K ELK ++ L E E+ ++ L + + E
Sbjct: 412 KILAEDEKLLDEKKQFEKIAEELKGKEQELIFLLQAREKEIHDLEIQLTAIKTSEEHYLK 471
Query: 619 QTIELRAKSKLEKAEG-ELTT----VREENKKLKQGKIRLVYSLFK---DPQPAQSKLEK 670
+ +L+ + + EK + ELT + ENK+L Q + L K D + + E+
Sbjct: 472 EVEDLKTELEKEKLKNIELTAHCDKLLLENKELTQEASDMTLELKKHQEDIINCKKQEER 531
Query: 671 AEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEI 730
++ + E+ L+ E F+ +++K + E RS
Sbjct: 532 MLKQIENLEEKEMNLRDELESVREE----------FIQKGDEVKCKLDKSEENARSIEYE 581
Query: 731 IGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNN 781
+ + E ++ LE+ + + + +E L + N L K+ N
Sbjct: 582 VLKKEKQMKILENKCNNLKKQIENKNKNIEELHQENKALKKKGSAENKQLN 632
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 39.4 bits (92), Expect = 0.008
Identities = 62/298 (20%), Positives = 120/298 (40%), Gaps = 50/298 (16%)
Query: 305 SPSLKAFQKEGR-YLDSALPLIGISYTGEPMGANTNTSSDSTLPPSSEDMRHWKR----D 359
S L+ ++K R LD + + ++++ D S + W +
Sbjct: 180 SQGLEDYRKRKRQRLDQKAAEY-LRQAAQAGTTGSSSADDLADLLSKFRLDSWDKGSRFT 238
Query: 360 RLQLLQQLAEAKASLEDLSCSR--TRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQ 417
R + ++Q A A A + R +A++ +LQ+ +ID L
Sbjct: 239 RTEKVEQAATAAAEVPPAEMDTEEDRTKEREAELEALQE--------------QIDELES 284
Query: 418 EMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVS----KELE-V 472
+ + S++ A +S + EL VR E +E E K R +E+ + +L+ +
Sbjct: 285 SIEEVLSEIKALASKIKQVNEELTTVRQENEELEEEYKIKKRTVELLPDAENNVAKLQAL 344
Query: 473 LRGELEEQKTATKQWKK------DWYQSVKERNA-AVAELKQAQTENEALKEKLTSLEQE 525
+ E +QW+ D Y+S+KE+N E ++ E + L+ K+ LE E
Sbjct: 345 VVASSERLLELAQQWEAHRTPLIDEYRSLKEKNRNKEDETQRQLDEIKKLRNKIEELESE 404
Query: 526 LKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAV--RVREMSGISEKYEKD 581
L+ E+ ++ L + E+ K + +SA R+ E+ +K ++D
Sbjct: 405 LQTKEQ--------------LYKQLLDEYENAPKSVSRSAYTRRILEIIKNIKKQKED 448
>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine
Kinase, Muscle-specific kinase. Protein Tyrosine Kinase
(PTK) family; Muscle-specific kinase (Musk); catalytic
(c) domain. The PTKc family is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Musk is a receptor tyr kinase (RTK) containing an
extracellular region with four immunoglobulin-like
domains and a cysteine-rich cluster, a transmembrane
segment, and an intracellular catalytic domain. Musk is
expressed and concentrated in the postsynaptic membrane
in skeletal muscle. It is essential for the
establishment of the neuromuscular junction (NMJ), a
peripheral synapse that conveys signals from motor
neurons to muscle cells. Agrin, a large proteoglycan
released from motor neurons, stimulates Musk
autophosphorylation and activation, leading to the
clustering of acetylcholine receptors (AChRs). To date,
there is no evidence to suggest that agrin binds
directly to Musk. Mutations in AChR, Musk and other
partners are responsible for diseases of the NMJ, such
as the autoimmune syndrome myasthenia gravis.
Length = 288
Score = 38.7 bits (90), Expect = 0.008
Identities = 59/236 (25%), Positives = 92/236 (38%), Gaps = 51/236 (21%)
Query: 21 RFIQQGNFGDIY-------LVEEKQSHNTFVMKKVLRE----KMPNTIERD--IMVKSKC 67
R I QG FG ++ L E T V K+L+E M +R+ +M +
Sbjct: 11 RDIGQGAFGRVFQARAPGLLPYEPF---TMVAVKMLKEEASADMQADFQREAALMAEFDH 67
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFVTLLE-----NQPHGYLSESKARFY------- 115
P IV L + + EY+ GD L Q S S AR
Sbjct: 68 PNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPL 127
Query: 116 --IYELAQAVQ------YLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIK 167
+L A Q YL +VHRD+ N L+ +K+ DFG + + K
Sbjct: 128 SCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYK 187
Query: 168 S----IVPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF 218
+ +P+ ++ PE + + + YT D+W+ GVV +E+ + G P+
Sbjct: 188 ASENDAIPI---RWMPPESIFY-------NRYTTESDVWAYGVVLWEIFSYGMQPY 233
>gnl|CDD|224241 COG1322, COG1322, Predicted nuclease of restriction
endonuclease-like fold, RmuC family [General function
prediction only].
Length = 448
Score = 38.9 bits (91), Expect = 0.008
Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 5/171 (2%)
Query: 360 RLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEM 419
QLL +L + L +L+ ++L L A + +Q T SL + E I L +
Sbjct: 20 IRQLLLRLGRLEQMLGELAAVLEQLLLLLAFRAEAEQLRTFARSLQALNLELIQELNELK 79
Query: 420 VKKESDLVATSSDLVATRHELEEVRSELKE--KENLEKTDDRKLEVCE-VSKELEVLRGE 476
+ + L+ + L L ++ SE +E E E+ + R E+ + K+L E
Sbjct: 80 ARLQQQLLQSREQLQLLIESLAQLSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLRE 139
Query: 477 LEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
+ E +Q ++ ++S +ER+ + E+ + E + L ++ +L LK
Sbjct: 140 VLE--KFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALK 188
Score = 33.1 bits (76), Expect = 0.60
Identities = 32/148 (21%), Positives = 62/148 (41%), Gaps = 16/148 (10%)
Query: 503 AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEME 562
AE +Q +T +L+ L QEL E A Q L + Q L ++ + E +
Sbjct: 52 AEAEQLRTFARSLQALNLELIQEL---NELKARLQQQLLQSREQLQLLIESLAQLSSEFQ 108
Query: 563 QSAVRVREMSG--ISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQT 620
+ A + E ++E +++ K LL+ +E LE K E + + + ++
Sbjct: 109 ELANEIFEELNRRLAELNQQNLKQLLKPL--REVLE------KFR-EQLEQRIHESAEER 159
Query: 621 IELRAKSKLEKAEGELTTVREENKKLKQ 648
L ++++ GE+ + +E L
Sbjct: 160 STL--LEEIDRLLGEIQQLAQEAGNLTA 185
>gnl|CDD|220173 pfam09311, Rab5-bind, Rabaptin-like protein. Members of this
family are predominantly found in Rabaptin and allow for
binding to the GTPase Rab5. This interaction is
necessary and sufficient for Rab5-dependent recruitment
of Rabaptin5 to early endosomal membranes.
Length = 180
Score = 37.4 bits (87), Expect = 0.011
Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 19/159 (11%)
Query: 363 LLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQE---- 418
+ QL E +AS + L R LQ + L+ +L L E+E+ +L +E
Sbjct: 13 VQDQLQELEASRQKLRAQLRR---LQQENQWLRGELALTQQELQASEQEVIQLPEEVKHL 69
Query: 419 ---MVKKESDLVATSSDLVATRHELEEVRSE---LKE-KENLEKTDDRKLEVCEVSKELE 471
+++ +L+ + A+ H EE++SE LKE K NLE+ ++E+ ++ E +
Sbjct: 70 QFLCLQRREELIESR---TASEHLEEELKSEIDPLKELKPNLEEELAAEIELPQIQSEKD 126
Query: 472 VLRGELEEQKT--ATKQWKKDWYQSVKERNAAVAELKQA 508
L+ L E T Y+S AV K A
Sbjct: 127 QLQASLYEIPARLRTLHNLVIQYESQGRYEVAVPLCKAA 165
Score = 35.1 bits (81), Expect = 0.074
Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 14/170 (8%)
Query: 387 LQAQVSSLQQDLTSHTSLLS----KKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEE 442
LQ S +Q+ + L K ++ RL+QE +L T +L A+ E+ +
Sbjct: 2 LQLSFSQVQEAVQDQLQELEASRQKLRAQLRRLQQENQWLRGELALTQQELQASEQEVIQ 61
Query: 443 VRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAV 502
+ E+K + L R+ E+ E E L EL+ + K+ K + ++E AA
Sbjct: 62 LPEEVKHLQFL--CLQRREELIESRTASEHLEEELKSEIDPLKELKPN----LEEELAAE 115
Query: 503 AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSN 552
EL Q Q+E + L+ L + L+ L +S+ R A+
Sbjct: 116 IELPQIQSEKDQLQASLYEIPARLR----TLHNLVIQYESQGRYEVAVPL 161
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 38.5 bits (90), Expect = 0.016
Identities = 47/242 (19%), Positives = 89/242 (36%), Gaps = 41/242 (16%)
Query: 457 DDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALK 516
+ R+ + EV ++L L ++++ K E L+
Sbjct: 29 EVRRCD--EVERKLRKLESKIKKLGIPLKDTGGK-------------PDVPPSKEFLDLE 73
Query: 517 EKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISE 576
E++ LE E+K EE L SL+ ++ E + N ++ + ++++ + E+S +
Sbjct: 74 EEILDLEAEIKEVEENL----ESLEKEINELEEWLNVLDEEKSFLDENLEELSELSNLDI 129
Query: 577 KYEKDR-KTLLELKS-----AKERLE-LE------VRGYKLDLESTRRELETNKDQ-TIE 622
++ R L+L +E+LE E RGY E + K I
Sbjct: 130 DFKYLRGAEGLKLGFVAGVINREKLEAFERELWRACRGYIRQAEIEEPLEDPKKTVFIIF 189
Query: 623 LRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREEN 682
K L+K V++ ++ V + SK+ K EL V E+
Sbjct: 190 FVGKEDLDK-------VKKILDSFG-FELYDVPETEGERSELISKVNKRIEELQRVLEQT 241
Query: 683 KK 684
+
Sbjct: 242 ES 243
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 38.1 bits (89), Expect = 0.018
Identities = 48/224 (21%), Positives = 105/224 (46%), Gaps = 18/224 (8%)
Query: 415 LRQEMVKKESDLVATSSDLVATRHELEEVR-----SELKEKENLEKTDDRKLEVCEVSKE 469
L+ E+ + DL A D+ + LE V LKE+ +LE+ E +E
Sbjct: 223 LQTELPGQLQDLKAGYRDMKEEGYHLEHVNIDSRLERLKEQLVENSELLTQLELDEAEEE 282
Query: 470 LEVLRGELEEQ-KTATKQWKKDWYQSVKERNAAVAE-LKQAQTENEALKEKLTSLEQELK 527
L +++ ++E ++ + V+E + + L++A+ NE LKE++ +++ +
Sbjct: 283 LGLIQEKIESLYDLLEREVEA--KNVVEENLPILPDYLEKAKENNEHLKEEIERVKESYR 340
Query: 528 VSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE 587
++E L + + + +L+E L + ++ + + +E V S + + E+ K L +
Sbjct: 341 LAETELGSVR-KFEKELKE---LESVLDEILENIEAQEVA---YSELQDNLEEIEKALTD 393
Query: 588 LKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEK 631
++ +E+++ + + D R LE K + E+ K +EK
Sbjct: 394 IEDEQEKVQEHLTSLRKDELEARENLERLKSKLHEI--KRYMEK 435
Score = 33.1 bits (76), Expect = 0.56
Identities = 35/197 (17%), Positives = 66/197 (33%), Gaps = 22/197 (11%)
Query: 344 STLPPSSEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTS 403
LP + + K + L +++ K S V + ++ L+ L
Sbjct: 309 ENLPILPDYLEKAKENNEHLKEEIERVKESYRLAETELGSVRKFEKELKELESVLDEILE 368
Query: 404 LLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRS-ELKEKENLEK------T 456
+ +E L+ + + E L + + L +R EL+ +ENLE+
Sbjct: 369 NIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSKLHE 428
Query: 457 DDRKLEVC--------------EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAV 502
R +E E++ L EL E + + ++ N
Sbjct: 429 IKRYMEKSNLPGLPETFLSLFFTAGHEIQDLMKELSEVPINMEAVSALVDIATEDMNTLE 488
Query: 503 AELKQAQTENEALKEKL 519
E ++ EN L E+L
Sbjct: 489 DETEEV-VENAVLAEQL 504
Score = 30.4 bits (69), Expect = 4.8
Identities = 70/345 (20%), Positives = 125/345 (36%), Gaps = 66/345 (19%)
Query: 473 LRGELEEQKTATKQWKKDWYQ-SVKERNAAVAELK---QAQTENEALKEKLTSLE-QELK 527
LR + ++ ++ K + V + + V +L Q +T+ E ++K +
Sbjct: 22 LRKKNYQRIDKLEERKNELLNLPVNDEISKVKKLHLTGQTETKFEEWRQKWDDIVTNSFA 81
Query: 528 VSEEALATAQNSLDS-KLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLL 586
EE L A+ D + + + + IE +E+ E+ + L
Sbjct: 82 DVEEHLFEAEALADKFRFNKAKHEIDDIEQQLTLIEED-------------IEQILEDLN 128
Query: 587 ELKSAKERLELEVRGYKLDLESTRRELETNKDQTIEL--RAKSKLEKAEGELTTVREENK 644
EL ++E+ E+ E RR++ N+ Q E + KLE E EL+ E
Sbjct: 129 ELVESEEKNSEEIDHVLELYEELRRDVLANRHQYGEAAPELEKKLENIEEELSQFVELTS 188
Query: 645 KLKQGKIRLVYSLFKDPQPAQSKLEKAEGEL------------------TTVREENKKLK 686
D A+ LE+AE + T + + + LK
Sbjct: 189 S-------------GDYIEAREVLEEAEEHMIALRSIMERIPSLLAELQTELPGQLQDLK 235
Query: 687 VSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRS-----ANEIIGEYETKITAL 741
+ E + L+ S LE LK E L A E +G + KI +L
Sbjct: 236 AGYRDMKEEG--YHLEHVNIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESL 293
Query: 742 ESTMTRS-------ESYCKEMVEYLETLQKNNDILSHDNEQLRKK 779
+ R E + +YLE ++NN+ L + E++++
Sbjct: 294 YDLLEREVEAKNVVEENLPILPDYLEKAKENNEHLKEEIERVKES 338
>gnl|CDD|240159 cd05120, APH_ChoK_like, Aminoglycoside 3'-phosphotransferase (APH)
and Choline Kinase (ChoK) family. The APH/ChoK family is
part of a larger superfamily that includes the catalytic
domains of other kinases, such as the typical
serine/threonine/tyrosine protein kinases (PKs), RIO
kinases, actin-fragmin kinase (AFK), and
phosphoinositide 3-kinase (PI3K). The family is composed
of APH, ChoK, ethanolamine kinase (ETNK), macrolide
2'-phosphotransferase (MPH2'), an unusual homoserine
kinase, and uncharacterized proteins with similarity to
the N-terminal domain of acyl-CoA dehydrogenase 10
(ACAD10). The members of this family catalyze the
transfer of the gamma-phosphoryl group from ATP (or CTP)
to small molecule substrates such as aminoglycosides,
macrolides, choline, ethanolamine, and homoserine.
Phosphorylation of the antibiotics, aminoglycosides and
macrolides, leads to their inactivation and to bacterial
antibiotic resistance. Phosphorylation of choline,
ethanolamine, and homoserine serves as precursors to the
synthesis of important biological compounds, such as the
major phospholipids, phosphatidylcholine and
phosphatidylethanolamine and the amino acids, threonine,
methionine, and isoleucine.
Length = 155
Score = 36.2 bits (84), Expect = 0.018
Identities = 32/150 (21%), Positives = 56/150 (37%), Gaps = 24/150 (16%)
Query: 18 DIKRFIQQGNFGDIYLVEEKQSH-----NTFVMKKVLREKMPNTIERDIM--VKSKCPYI 70
+ ++ G +YL+ K N K RE+ E I+ + K +
Sbjct: 1 SSIKLLKGGLTNRVYLLGTKDEDYVLKINPSREKGADRER-----EVAILQLLARKGLPV 55
Query: 71 VNLFYSFQDMNHVYFIMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLG 130
+ S + Y +ME++ G + E + E A +LA+ + LH L
Sbjct: 56 PKVLASGESDGWSYLLMEWIEGETLDEVSEEEK-----EDIAE----QLAELLAKLHQLP 106
Query: 131 Y---VHRDIKPDNMLLSATGHLKLTDFGSA 157
H D+ P N+L+ L + D+ A
Sbjct: 107 LLVLCHGDLHPGNILVDDGKILGIIDWEYA 136
>gnl|CDD|222878 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 37.7 bits (88), Expect = 0.022
Identities = 35/169 (20%), Positives = 72/169 (42%), Gaps = 6/169 (3%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVK 421
+L+++ KA +E+L+ +L L + L + +K + +I++ ++ +
Sbjct: 224 ELVEEAKTIKAEIEELT---DELLNLVMDIEDPSAALNKLNTAAAKIKSKIEQFQKVIKM 280
Query: 422 KESDLV--ATSSDLVATRHELEEVRSELKE-KENLEKTDDRKLEVCEVSKELEVLRGELE 478
E V + + + +++ +LKE + +LEK D E+ E+ E +L
Sbjct: 281 YEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLL 340
Query: 479 EQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
E K K+ V + A +++ Q E E+L L+ EL
Sbjct: 341 ELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389
Score = 29.6 bits (67), Expect = 7.7
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 13/95 (13%)
Query: 365 QQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKES 424
+L E + S ++L L+ ++S+ +Q L + K + I+ L+ E V
Sbjct: 323 DELEEIMDEFNEQS---KKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAE 379
Query: 425 ----------DLVATSSDLVATRHELEEVRSELKE 449
+V T S+LV ++ V LK+
Sbjct: 380 ELAKLQDELDKIVKTKSELVKEKYHRGIVTDLLKD 414
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 37.7 bits (89), Expect = 0.023
Identities = 28/113 (24%), Positives = 47/113 (41%), Gaps = 21/113 (18%)
Query: 437 RHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVK 496
R E V+ L ++ D E+ E+ +E L+ ELEE +
Sbjct: 8 RENPEAVKEALAKRGFPLDVD----ELLELDEERRELQTELEELQ--------------A 49
Query: 497 ERNAA---VAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLRE 546
ERNA + + K+ + EAL ++ L++E+K E L + L+ L
Sbjct: 50 ERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLR 102
>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family
protein/serine/threonine protein kinase; Validated.
Length = 535
Score = 37.6 bits (88), Expect = 0.024
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 86 IMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSA 145
+MEY+ G D +LE P + ++ + V LH G VH D+ N ++
Sbjct: 414 VMEYIGGKDLKDVLEGNPE----------LVRKVGEIVAKLHKAGIVHGDLTTSNFIVRD 463
Query: 146 TGHLKLTDFG 155
L L DFG
Sbjct: 464 -DRLYLIDFG 472
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 37.9 bits (88), Expect = 0.027
Identities = 44/201 (21%), Positives = 83/201 (41%), Gaps = 45/201 (22%)
Query: 365 QQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKES 424
++A A A + R R++AL Q+ Q+ L++ + I + QE ++ +
Sbjct: 409 DEVAAALAQHAEQRPLRQRLVALHGQIVPQQKR-------LAQLQVAIQNVTQEQTQRNA 461
Query: 425 DLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVS---KELEVLRGELEEQK 481
L E+R KEK + D + + CE K+LE R +L+ +
Sbjct: 462 --------------ALNEMRQRYKEK-TQQLADVKTI--CEQEARIKDLEAQRAQLQAGQ 504
Query: 482 T-----ATKQWKKDWYQSVK------ERNAAVAELKQAQTENEALKEKLTSLEQELKVSE 530
+T + YQ+++ +A E+K+ E AL+ +L +L ++L+ E
Sbjct: 505 PCPLCGSTSHPAVEAYQALEPGVNQSRLDALEKEVKKLGEEGAALRGQLDALTKQLQRDE 564
Query: 531 EALATAQNSLDSKLREHQALS 551
+ +E QAL+
Sbjct: 565 SEAQSL-------RQEEQALT 578
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of this
family of proteins are involved in maintaining Golgi
structure. They stimulate the formation of Golgi stacks
and ribbons, and are involved in intra-Golgi retrograde
transport. Two main interactions have been
characterized: one with RAB1A that has been activated by
GTP-binding and another with isoform CASP of CUTL1.
Length = 509
Score = 37.5 bits (87), Expect = 0.027
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 13/207 (6%)
Query: 360 RLQLLQQLA-EAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQE 418
RLQ Q E K+ LEDL R+R L+ + + LQ+ L K L
Sbjct: 115 RLQEAAQELRELKSELEDLRSERSRDLSDEESIKRLQR---GAVRSLQDKLLL---LDAA 168
Query: 419 MVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKL-EVCEVSKELEVLRGEL 477
+ + + +++ + +LE + EL E++ + + L E E+ + L++LR E
Sbjct: 169 VKRHDGNVITAVLIFLKRTLKLEILFQELAERQTALRHLSKHLQEEGELQQLLKLLRAEG 228
Query: 478 EEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQ 537
E +K +Q+++ ++ ++ + + LK E L + EL+ + Q
Sbjct: 229 ESEKQELQQYRQKAHRILQSKEKRINFLK-EGCLFEGLDSSTAQI--ELEELKHESEHVQ 285
Query: 538 NSLDSKLREHQALSNTIESMQKEMEQS 564
+ E Q + E+ +E E S
Sbjct: 286 EEI--TKLEGQIIQLRSEAQDREAEAS 310
Score = 35.6 bits (82), Expect = 0.12
Identities = 40/246 (16%), Positives = 86/246 (34%), Gaps = 22/246 (8%)
Query: 422 KESDLVATSSDLVATRHELEEVRSELKE-KENLEKTDDRKLEVCEVSKELEVL-RGELEE 479
+L A + L+E EL+E K LE + + ++ L RG +
Sbjct: 98 SSQSSSDLEDELAALKIRLQEAAQELRELKSELEDLRSERSRDLSDEESIKRLQRGAVRS 157
Query: 480 QKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNS 539
+ A T ++ LE + E TA
Sbjct: 158 LQDKLLL----------LDAAVKRHDGNVITAVLIFLKRTLKLEILFQELAERQ-TALRH 206
Query: 540 LDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE-LKSAKERLELE 598
L L+E L ++ ++ E E +++ + + + ++ + LK L+
Sbjct: 207 LSKHLQEEGELQQLLKLLRAEGESEKQELQQYRQKAHRILQSKEKRINFLKEGCLFEGLD 266
Query: 599 VRGYKLDLESTRRELETNKD-------QTIELRAKSKLEKAEGELTTVREENKKLKQGKI 651
+++LE + E E ++ Q I+LR++++ +AE K+ ++
Sbjct: 267 SSTAQIELEELKHESEHVQEEITKLEGQIIQLRSEAQDREAEAS-GEAESFRKQPRELSQ 325
Query: 652 RLVYSL 657
++ +
Sbjct: 326 QIAPQI 331
Score = 29.4 bits (66), Expect = 8.3
Identities = 55/258 (21%), Positives = 92/258 (35%), Gaps = 49/258 (18%)
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELK-QAQTENEALKEK-LTSL 522
V + + +K Q +++ L Q A+ + + L
Sbjct: 46 SVRETASSNKARSRSEKWNPDQPGSRVSSPSSKKDGTSRSLSSQVDDLASAVSSQSSSDL 105
Query: 523 EQELKVSEEALATAQNSLDSKLREHQALSN------TIESMQKEMEQSAVRVREMSGISE 576
E EL + L A L E + L + + E K +++ AVR
Sbjct: 106 EDELAALKIRLQEAAQELRELKSELEDLRSERSRDLSDEESIKRLQRGAVRSL------- 158
Query: 577 KYEKDRKTLLELKSA----------------KERLELEVRGYKLD-LESTRRELETNKDQ 619
+ LL L +A K L+LE+ +L ++ R L + +
Sbjct: 159 -----QDKLLLLDAAVKRHDGNVITAVLIFLKRTLKLEILFQELAERQTALRHLSKHLQE 213
Query: 620 TIELRAKSKLEKAEG-----ELTTVREENKKLKQGKIRLVYSL-------FKDPQPAQSK 667
EL+ KL +AEG EL R++ ++ Q K + + L D AQ +
Sbjct: 214 EGELQQLLKLLRAEGESEKQELQQYRQKAHRILQSKEKRINFLKEGCLFEGLDSSTAQIE 273
Query: 668 LEKAEGELTTVREENKKL 685
LE+ + E V+EE KL
Sbjct: 274 LEELKHESEHVQEEITKL 291
>gnl|CDD|221776 pfam12795, MscS_porin, Mechanosensitive ion channel porin domain.
The small mechanosensitive channel, MscS, is a part of
the turgor-driven solute efflux system that protects
bacteria from lysis in the event of osmotic shock. The
MscS protein alone is sufficient to form a functional
mechanosensitive channel gated directly by tension in
the lipid bilayer. The MscS proteins are heptamers of
three transmembrane subunits with seven converging M3
domains, and this MscS_porin is towards the N-terminal
of the molecules. The high concentration of negative
charges at the extracellular entrance of the pore helps
select the cations for efflux.
Length = 239
Score = 36.9 bits (86), Expect = 0.027
Identities = 39/192 (20%), Positives = 76/192 (39%), Gaps = 13/192 (6%)
Query: 453 LEKTDDRKLEVCEVSKELEVLRG------ELEEQKTATKQWKKDWYQSVKERNAAVAELK 506
L++ + RKL E ++ L E+++ K Q++K + KE EL+
Sbjct: 3 LDQLNKRKLPTPEQKALIQDLEQALNFLDEIDKSKQKADQYQKQIDDAPKELRELRQELE 62
Query: 507 QAQTENEALKEKLTS-----LEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEM 561
+ + + +L + LEQ L + L Q L + + L E Q+++
Sbjct: 63 ALKKTDAPVFPELANLSLSQLEQRLAQTLSQLQELQEQLQQENSQLIELQTRPERAQQQL 122
Query: 562 EQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTI 621
++ R++E+ + L + + + EL K +E EL +N ++
Sbjct: 123 SEARRRLQEIRNRLQALSPGGTPLAQAQRTLLQAELAAL--KAQIEELELELLSNNNRQE 180
Query: 622 ELRAKSKLEKAE 633
LR + L K
Sbjct: 181 LLRLQRDLLKKR 192
Score = 33.0 bits (76), Expect = 0.43
Identities = 33/186 (17%), Positives = 71/186 (38%), Gaps = 28/186 (15%)
Query: 370 AKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVAT 429
A SL L R+ +Q+ LQ+ L S L + + +R +Q++
Sbjct: 76 ANLSLSQLE---QRLAQTLSQLQELQEQLQQENSQLIELQTRPERAQQQL---------- 122
Query: 430 SSDLVATRHELEEVRSELK----EKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATK 485
R L+E+R+ L+ L + L+ + + ++ ELE +
Sbjct: 123 ----SEARRRLQEIRNRLQALSPGGTPLAQAQRTLLQAELAALKAQIEELELELLSNNNR 178
Query: 486 QWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLR 545
Q + + +R+ +++ + E +AL+ + + L SE+A+ A+ +
Sbjct: 179 Q---ELLR--LQRDLLKKRIERLEAELQALQNAIN--RKRLAESEQAVEEAERLAEQSAG 231
Query: 546 EHQALS 551
+
Sbjct: 232 LPPLIQ 237
>gnl|CDD|219631 pfam07902, Gp58, gp58-like protein. Sequences found in this family
are derived from a number of bacteriophage and prophage
proteins. They are similar to gp58, a minor structural
protein of Lactococcus delbrueckii bacteriophage LL-H.
Length = 601
Score = 37.6 bits (87), Expect = 0.029
Identities = 20/108 (18%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 349 SSEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKK 408
S++ MR ++ LQ ++ A + + VS +QQ L S+ L
Sbjct: 233 SNQGMRTELESKISGLQSTQQSTAHQISQ-----EISNREGAVSRVQQTLDSYQRRLQDA 287
Query: 409 EEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKT 456
E+ L Q + +S + +S + + +L + + + +E
Sbjct: 288 EDNYSSLTQTVAGLQSTVSGPNSKIQSRFTQLAGLIDQKVTRGGVESI 335
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 36.6 bits (85), Expect = 0.031
Identities = 35/183 (19%), Positives = 70/183 (38%), Gaps = 14/183 (7%)
Query: 476 ELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALAT 535
+L E + K + + + +++ + Q E + K ++ L++E+ +E +
Sbjct: 39 KLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVE 98
Query: 536 AQNSLDSKLREHQALSNTIESMQ-----KEMEQSAVRVREMSGISE------KYEKDRKT 584
Q L + R Q + K RV +S I + + +K+ K
Sbjct: 99 RQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAISVIVDADKKILEQQKEDKK 158
Query: 585 LLELKSAKERLELE-VRGYKLDLESTRRELETNKDQ--TIELRAKSKLEKAEGELTTVRE 641
LE K A +LE + + +LE+ L + K + + +K A GE + E
Sbjct: 159 SLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEE 218
Query: 642 ENK 644
+
Sbjct: 219 QKA 221
Score = 33.9 bits (78), Expect = 0.23
Identities = 37/195 (18%), Positives = 76/195 (38%), Gaps = 23/195 (11%)
Query: 387 LQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEE-VRS 445
+Q ++ SL + S + + ++EID+ + E+ K + ++ ++V + L++ R+
Sbjct: 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARA 109
Query: 446 E------------LKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQ 493
+ ++ R V +S ++ + LE+QK K ++
Sbjct: 110 MQVNGTATSYIDVILNSKSFSDLISR---VTAISVIVDADKKILEQQKEDKKSLEEKQAA 166
Query: 494 SVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSK---LREHQAL 550
+ L Q E E L S + E ALA + S + L E +AL
Sbjct: 167 LEDKLE----TLVALQNELETQLNSLNSQKAEKNALIAALAAKEASALGEKAALEEQKAL 222
Query: 551 SNTIESMQKEMEQSA 565
+ + + E +A
Sbjct: 223 AEAAAAEAAKQEAAA 237
Score = 30.5 bits (69), Expect = 2.8
Identities = 30/212 (14%), Positives = 82/212 (38%), Gaps = 27/212 (12%)
Query: 402 TSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKL 461
+ + ++ ++ L++E ++++ L E++ EL+++ + K + +KL
Sbjct: 30 SDKIQNQDSKLSELQKEKKNIQNEI----ESLDNQIEEIQSKIDELQKEIDQSKAEIKKL 85
Query: 462 EVCEVSKELEVLRGELEEQKTATKQWKKDWY---------------QSVKERNAAVAELK 506
+ KE+ L+ + E++ K+ + +S + + V +
Sbjct: 86 Q-----KEIAELKENIVERQELLKKRARAMQVNGTATSYIDVILNSKSFSDLISRVTAIS 140
Query: 507 QAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAV 566
++ + E+ ++ L+ + AL +L + E + N++ S + E
Sbjct: 141 VIVDADKKILEQQKEDKKSLEEKQAALEDKLETLVALQNELETQLNSLNSQKAEKN---A 197
Query: 567 RVREMSGISEKYEKDRKTLLELKSAKERLELE 598
+ ++ ++ L E K+ E E
Sbjct: 198 LIAALAAKEASALGEKAALEEQKALAEAAAAE 229
>gnl|CDD|236400 PRK09188, PRK09188, serine/threonine protein kinase; Provisional.
Length = 365
Score = 37.1 bits (86), Expect = 0.035
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 102 QPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDI-KPDNMLLSATGHLKLTDFGSATQV 160
+PHG + + +A++ LH G H D+ KP N L+ G + DF A+
Sbjct: 109 RPHGDPA------WFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVF 162
Query: 161 DKNGRIKSI 169
+ G + I
Sbjct: 163 RRRGALYRI 171
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 37.3 bits (86), Expect = 0.035
Identities = 75/411 (18%), Positives = 155/411 (37%), Gaps = 48/411 (11%)
Query: 357 KRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLR 416
++ R Q++ E + L+ L + + ++ Q++S + L S ++ E E+D L+
Sbjct: 192 RQVRQTQGQKVQEHQMELKYLKQYKEKACEIRDQITSKEAQLESSREIVKSYENELDPLK 251
Query: 417 QEMVKKESDLVATSSDLVATRHELEEVRSELKEKEN-LEKTDDRKLEVCEVSKELEVLRG 475
+ E+E S++ + +N ++ RK ++ + + ELE+
Sbjct: 252 NRL------------------KEIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKM- 292
Query: 476 ELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALAT 535
E+ T + D Y + V E ++ + + EKL + L + L
Sbjct: 293 --EKVFQGTDEQLNDLYHN---HQRTVREKERELVDCQRELEKLNKERRLLNQEKTELLV 347
Query: 536 AQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERL 595
Q L + HQ +S+ + + E+ G +R+ ER
Sbjct: 348 EQGRLQLQADRHQEHIRARDSLIQSLATRL----ELDGFERGPFSERQIKNFHTLVIERQ 403
Query: 596 ELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVY 655
E E + + + ++Q E+R + K EL E KQ +++ V
Sbjct: 404 EDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEK---KQEELKFVI 460
Query: 656 SLFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKS 715
+ + + ++ + + EL E K E NSL T ++ L++
Sbjct: 461 KELQQLEGSSDRILELDQELRKAERELSK--------AEKNSLT----ETLKKEVKSLQN 508
Query: 716 NYTERESKLRSANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNN 766
+ + KLR ++ + + T T T+ E K+ ++ E ++K
Sbjct: 509 EKADLDRKLRKLDQEMEQLNHHTT----TRTQMEMLTKDKMDKDEQIRKIK 555
Score = 35.8 bits (82), Expect = 0.12
Identities = 47/272 (17%), Positives = 113/272 (41%), Gaps = 29/272 (10%)
Query: 387 LQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSE 446
LQ+++ L S S L KKE+ D + ++S + ++ R++L++V +
Sbjct: 700 LQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRD 759
Query: 447 L-KEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAEL 505
+ + K ++E+ + L + E E S K V +
Sbjct: 760 IQRLKNDIEEQE----------TLLGTIMPEEE---------------SAKVCLTDVTIM 794
Query: 506 KQAQTENEALKEKLTSLEQELKVSEEALATAQ--NSLDSKLREHQALSNTIESMQKEMEQ 563
++ Q E + ++ K+ +L+ S+ Q K E + + IE +K ++
Sbjct: 795 ERFQMELKDVERKIAQQAAKLQGSDLDRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQD 854
Query: 564 SAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIEL 623
+++ + + + + ++ + +++ E ++ +++S RE++ K+Q L
Sbjct: 855 QQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPL 914
Query: 624 -RAKSKLEKAEGELTTVREENKKLKQGKIRLV 654
K ++ + EL + +E + K Q K+ +
Sbjct: 915 ETFLEKDQQEKEELISSKETSNKKAQDKVNDI 946
Score = 30.0 bits (67), Expect = 6.8
Identities = 57/301 (18%), Positives = 119/301 (39%), Gaps = 22/301 (7%)
Query: 409 EEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKE-NLEKTDDRKLEVCEVS 467
E+ + +E+ + L + +L + + +EL+ KE L +D+ +VC
Sbjct: 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLFDVCGSQ 635
Query: 468 KE---LEVLRGELEEQK------TATKQWKKDWYQSVKERNAAVAELKQA--QTENE--- 513
E LE L+ E+E+ + + + N + + Q QTE E
Sbjct: 636 DEESDLERLKEEIEKSSKQRAMLAGATAVYSQFITQLTDENQSCCPVCQRVFQTEAELQE 695
Query: 514 ---ALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVRE 570
L+ KL +LK +E L + D L + I+ +KE+ + ++++
Sbjct: 696 FISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQK 755
Query: 571 MSGISEKYEKD---RKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKS 627
++ ++ + D ++TLL +E +E + EL+ + + + AK
Sbjct: 756 VNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKL 815
Query: 628 KLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKV 687
+ + + V +E K+ KQ ++ V S + + ++ L + E K K+
Sbjct: 816 QGSDLDRTVQQVNQE-KQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKL 874
Query: 688 S 688
Sbjct: 875 Q 875
>gnl|CDD|181619 PRK09039, PRK09039, hypothetical protein; Validated.
Length = 343
Score = 36.5 bits (85), Expect = 0.044
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 25/146 (17%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVA----TSSDLVATRHELEEVRSEL----KEKENLEKT 456
+S K+ +DRL + + + +DL++ + DL + + +R+ L E+ L+
Sbjct: 48 ISGKDSALDRLNSQ-IAELADLLSLERQGNQDL---QDSVANLRASLSAAEAERSRLQAL 103
Query: 457 DDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALK 516
E+ E GEL ++ + KQ V R A EL Q AL+
Sbjct: 104 LA---ELAGAGAAAEGRAGELAQELDSEKQ--------VSARALAQVELLNQQIA--ALR 150
Query: 517 EKLTSLEQELKVSEEALATAQNSLDS 542
+L +LE L SE+ +Q +
Sbjct: 151 RQLAALEAALDASEKRDRESQAKIAD 176
Score = 29.2 bits (66), Expect = 8.4
Identities = 20/106 (18%), Positives = 43/106 (40%), Gaps = 3/106 (2%)
Query: 357 KRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLR 416
++ L +A +ASL R+R LQA ++ L + + +E+D +
Sbjct: 73 RQGNQDLQDSVANLRASLSAAEAERSR---LQALLAELAGAGAAAEGRAGELAQELDSEK 129
Query: 417 QEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLE 462
Q + + + + + A R +L + + L E ++ K+
Sbjct: 130 QVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIA 175
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 37.2 bits (86), Expect = 0.044
Identities = 43/225 (19%), Positives = 88/225 (39%), Gaps = 18/225 (8%)
Query: 406 SKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENL---EKTDDRKLE 462
+ K+ + Q + L TS V + + + ++ E E
Sbjct: 55 APKQRSSNSKLQSNTDENGQLENTSLRTVMELPQKSTSSDDDHNRASMQRDEAIAAIDNE 114
Query: 463 VCEVSKELE-VLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTS 521
SK+ E + +LE+ + +K+ + R A+ +L++ TE EAL+ K+
Sbjct: 115 QQTNSKDGEQLSDFQLEDLVGMIQNAEKNILLLNQARLQALEDLEKILTEKEALQGKINI 174
Query: 522 LEQELKVSEEALATA-QNSLDSKLREHQALSNTIESMQKE-----------MEQSAVRVR 569
LE L ++ + A Q + ++ E Q E + + E ++
Sbjct: 175 LEMRLSETDARIKLAAQEKIHVEILEEQLEKLRNELLIRGATEGLCVHSLSKELDVLKEE 234
Query: 570 EMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELE 614
M + + + + L+E+ +ER+ + L L+++ RELE
Sbjct: 235 NML-LKDDIQFLKAELIEVAETEERVFKLEKERSL-LDASLRELE 277
Score = 34.5 bits (79), Expect = 0.30
Identities = 67/301 (22%), Positives = 126/301 (41%), Gaps = 37/301 (12%)
Query: 497 ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIES 556
+R+ A+A + Q N E+L+ + E + + QN+ + L +QA +E
Sbjct: 103 QRDEAIAAIDNEQQTNSKDGEQLSDFQLE-----DLVGMIQNAEKNILLLNQARLQALED 157
Query: 557 M-----QKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRR 611
+ +KE Q + + EM +SE + + +A+E++ +E+ +L E R
Sbjct: 158 LEKILTEKEALQGKINILEMR-LSETDARIKL------AAQEKIHVEILEEQL--EKLRN 208
Query: 612 ELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSL--FKDPQPAQSKLE 669
EL ++ EL ++EEN LK L L + + KLE
Sbjct: 209 ELL----IRGATEGLCVHSLSK-ELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLE 263
Query: 670 KAEGEL-TTVREENKKLKVSFFFTLESNSL---FWLDPNTFLSSLEDLKSNYTERESKLR 725
K L ++RE K V+ + + L W + L L D +N E+ + +
Sbjct: 264 KERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLDRATNQVEKAALVL 323
Query: 726 SANEIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDILS 785
N+ + K+ LE+++ + K +E LQ+ +L E+L+ +++I S
Sbjct: 324 DQNQ---DLRDKVDKLEASLKEANVS-KFSSYKVELLQQKLKLLE---ERLQASDHEIHS 376
Query: 786 H 786
+
Sbjct: 377 Y 377
>gnl|CDD|133217 cd05086, PTKc_Aatyk2, Catalytic domain of the Protein Tyrosine
Kinase, Apoptosis-associated tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Apoptosis-associated
tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Aatyk2 is
a member of the Aatyk subfamily of proteins, which are
receptor kinases containing a transmembrane segment and
a long C-terminal cytoplasmic tail with a catalytic
domain. Aatyk2 is also called lemur tyrosine kinase 2
(Lmtk2) or brain-enriched kinase (Brek). It is expressed
at high levels in early postnatal brain, and has been
shown to play a role in nerve growth factor (NGF)
signaling. Studies with knockout mice reveal that Aatyk2
is essential for late stage spermatogenesis. Although it
is classified as a tyr kinase based on sequence
similarity and the phylogenetic tree, Aatyk2 has been
characterized as a serine/threonine kinase.
Length = 268
Score = 36.4 bits (84), Expect = 0.046
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRI----KSIVPVG 173
E+A V ++H ++H D+ N L++ +K+ D+G K I VP+
Sbjct: 107 EIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPL- 165
Query: 174 TPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELL 212
++APE++ G + T ++W++GV +EL
Sbjct: 166 --RWLAPELVGEFHGGLITAEQTKPSNVWALGVTLWELF 202
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 36.6 bits (85), Expect = 0.048
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 5/102 (4%)
Query: 432 DLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDW 491
D R+ + V+ LK + D KL + E + L E+EE + + K
Sbjct: 3 DRKLLRNNPDLVKESLKARGLSVDIDLEKLI--ALDDERKKLLSEIEELQAKRNELSKQI 60
Query: 492 YQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEAL 533
++ ++ + E+K+ E + LKE+LT L LK E L
Sbjct: 61 GKAKGQKKDKIEEIKK---ELKELKEELTELSAALKALEAEL 99
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 36.4 bits (85), Expect = 0.053
Identities = 33/157 (21%), Positives = 61/157 (38%), Gaps = 14/157 (8%)
Query: 477 LEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATA 536
+EE K + KK+ KE + + E + + +L LE+ L EE L
Sbjct: 38 IEEAKKEAETLKKEALLEAKE--EVHKLRAELERELKERRNELQRLERRLLQREETLDRK 95
Query: 537 QNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKS-----A 591
SLD K + + + +K +++ + + E + R+ L + A
Sbjct: 96 MESLDKKEENLEKKEKELSNKEKNLDE------KEEELEELIAEQREELERISGLTQEEA 149
Query: 592 KERLELEVRG-YKLDLESTRRELETNKDQTIELRAKS 627
KE L EV + + +E+E + + +AK
Sbjct: 150 KEILLEEVEEEARHEAAKLIKEIEEEAKEEADKKAKE 186
Score = 36.1 bits (84), Expect = 0.078
Identities = 34/142 (23%), Positives = 67/142 (47%), Gaps = 17/142 (11%)
Query: 401 HTSLLSKKEEEIDRLRQEMVKKESD------LVATSSDLVATRHELE----EVRSELK-- 448
L EE R+ +E KKE++ L+ ++ R ELE E R+EL+
Sbjct: 23 AEKKLGSAEELAKRIIEE-AKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRL 81
Query: 449 EKENLEKTD--DRKLE-VCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAEL 505
E+ L++ + DRK+E + + + LE EL ++ + +++ + + E+ + +
Sbjct: 82 ERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAEQREELERI 141
Query: 506 KQAQTENEALKEKLTSLEQELK 527
T+ EA + L +E+E +
Sbjct: 142 -SGLTQEEAKEILLEEVEEEAR 162
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA;
Provisional.
Length = 569
Score = 36.7 bits (86), Expect = 0.054
Identities = 62/338 (18%), Positives = 135/338 (39%), Gaps = 63/338 (18%)
Query: 395 QQDLTSHTSLLSKKEEEIDRLRQEMV------KKESDLVATSSD--------LVATRH-- 438
+ ++ SLL EE+I+++ +E+ +K + V D L+A R
Sbjct: 104 KHEINEIESLLDLIEEDIEQILEELQELLESEEKNREEVEQLKDLYRELRKSLLANRFSF 163
Query: 439 ---------ELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKK 489
+LE + E + L ++ D E + L+ L EL + ++ +
Sbjct: 164 GPALDELEKQLENLEEEFSQFVELTESGD----YVEAREILDQLEEELAALEQIMEEIPE 219
Query: 490 DWYQSVKERNAAVAELKQAQTE---------NEALKEKLTSLEQELKVSEEALATAQNSL 540
+ E + ELK E + +++++ L++++ + L L
Sbjct: 220 LLKELQTELPDQLQELKAGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELD--L 277
Query: 541 DSKLREHQALSNTIESM----QKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERL- 595
D +++ + I+ + ++E++ + + + E ++ ELK +R+
Sbjct: 278 DEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVK 337
Query: 596 --------ELE-VRGYKLDLESTRRELETNKDQTIELRA-----KSKLEKAEGELTTVRE 641
ELE VR + LES ++ + ++ E + +LE+ +L + +
Sbjct: 338 QSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIEK 397
Query: 642 ENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVR 679
E +KL + + L KD A+ KLE+ +L ++
Sbjct: 398 EQEKLSEM----LQGLRKDELEAREKLERYRNKLHEIK 431
Score = 33.3 bits (77), Expect = 0.54
Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 35/196 (17%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKK-------EEEIDR 414
L +Q+ E A LE+L + +Q+ + +L ++ E+ D
Sbjct: 260 DLKEQIDENLALLEELDLDEAE-----EKNEEIQERIDQLYDILEREVKARKYVEKNSDT 314
Query: 415 LRQ--EMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEV 472
L E K+++ + D V + L E SEL+ LEK ++ + K+ +
Sbjct: 315 LPDFLEHAKEQNKELKEEIDRVKQSYTLNE--SELESVRQLEK------QLESLEKQYDE 366
Query: 473 LRGELEEQKTATKQWKKDWYQSVKER-NAAVAELKQAQTENEALKEKLTSLEQELKVSEE 531
+ + EQ+ A Y ++E + +L++ + E E L E L L ++ + E
Sbjct: 367 ITERIAEQEIA--------YSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEARE 418
Query: 532 ALATAQNSLDSKLREH 547
L +KL E
Sbjct: 419 KLER----YRNKLHEI 430
Score = 32.5 bits (75), Expect = 1.1
Identities = 66/321 (20%), Positives = 117/321 (36%), Gaps = 64/321 (19%)
Query: 487 WKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLRE 546
W++ W + V + E + E K + + E+ E L + ++ L E
Sbjct: 69 WRQKWDEIVTNSLPDIEEQLF-EAEELNDKFRFRKAKHEINEIESLLDLIEEDIEQILEE 127
Query: 547 HQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE----LKSAKERLELEVRGY 602
Q L + E ++E+EQ + + Y + RK+LL A + LE
Sbjct: 128 LQELLESEEKNREEVEQ----------LKDLYRELRKSLLANRFSFGPALDELE-----K 172
Query: 603 KLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQ 662
+L+ LE Q +EL +A L + EE L+Q + + L K+ Q
Sbjct: 173 QLE------NLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQ-IMEEIPELLKELQ 225
Query: 663 ---PAQ-SKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYT 718
P Q +L+ EL EE + LD ++DLK
Sbjct: 226 TELPDQLQELKAGYRELV---EEG----------------YHLDHLDIEKEIQDLKEQID 266
Query: 719 ERESKLRS-----ANEIIGEYETKITALESTMTRS-------ESYCKEMVEYLETLQKNN 766
E + L A E E + +I L + R E + ++LE ++ N
Sbjct: 267 ENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQN 326
Query: 767 DILSHDNEQLRKKNNDILSHD 787
L + +++++ + L+
Sbjct: 327 KELKEEIDRVKQ--SYTLNES 345
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 35.5 bits (82), Expect = 0.056
Identities = 28/128 (21%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Query: 437 RHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVK 496
+ ++ VR + E+ E ++ ++ E+ +ELE L + E ++ + K+D +
Sbjct: 63 KAPVQSVRPQKLEELQGELSELKQQLS-ELQEELEDLEERIAELESELEDLKEDLQLLRE 121
Query: 497 ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIES 556
+ L+ + + L ++L L Q+L+ E L L L Q L I+
Sbjct: 122 LLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENL---QRLQEAIQE 178
Query: 557 MQKEMEQS 564
+Q +EQ
Sbjct: 179 LQSLLEQL 186
Score = 34.0 bits (78), Expect = 0.17
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 17/99 (17%)
Query: 365 QQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEID----------- 413
QQL+E + LEDL R+ L++++ L++DL LL EE ++
Sbjct: 86 QQLSELQEELEDL---EERIAELESELEDLKEDLQLLRELLKSLEERLESLEESIKELAK 142
Query: 414 ---RLRQEMVKKESDLVATSSDLVATRHELEEVRSELKE 449
LRQ++ ++ +L L L+E EL+
Sbjct: 143 ELRELRQDLREEVEELREELERLQENLQRLQEAIQELQS 181
Score = 32.0 bits (73), Expect = 0.76
Identities = 32/123 (26%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
++LE L+GEL E K + +++ + ++ER A + ++E E LKE L L +
Sbjct: 69 VRPQKLEELQGELSELKQQLSELQEE-LEDLEERIAEL------ESELEDLKEDLQLLRE 121
Query: 525 ELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKT 584
LK EE L + + S+ +E + L + +E+ + R++E ++ ++ ++
Sbjct: 122 LLKSLEERLESLEESIKELAKELRELRQDLREEVEELREELERLQENLQRLQEAIQELQS 181
Query: 585 LLE 587
LLE
Sbjct: 182 LLE 184
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 36.2 bits (84), Expect = 0.056
Identities = 20/107 (18%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 381 RTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHE- 439
+ V + +++ ++ ++ + +K E I+ L++ + ++ SDL + S L R
Sbjct: 63 KLEVARKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQ 122
Query: 440 LEEVRSELKEKENL-----EKTDDRKLEVCEVSKELEVLRGELEEQK 481
LE+++ E+K + +++ +C +L LR + +K
Sbjct: 123 LEKLQDEIKRTRSKLNALHSLLAEKRSFLCRELAKLFPLRRVIRGRK 169
Score = 30.8 bits (70), Expect = 2.3
Identities = 21/125 (16%), Positives = 42/125 (33%), Gaps = 24/125 (19%)
Query: 468 KELEVLRGE----LEEQKTATKQWKKD----WYQSVKERNAAVAE-LKQAQTENEALKEK 518
E E L+ + LE + D KER + + Q + E E +E+
Sbjct: 34 LENEELKQKVEEALEGATNEDGKLAADLLKLEVARKKERLNQIRARISQLKEEIEQKRER 93
Query: 519 LTSLEQELKV----SEEALATAQNSLDSKLREHQ-----------ALSNTIESMQKEMEQ 563
+ L++ L A + S+L + Q AL + + + + +
Sbjct: 94 IEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSKLNALHSLLAEKRSFLCR 153
Query: 564 SAVRV 568
++
Sbjct: 154 ELAKL 158
>gnl|CDD|173647 cd05091, PTKc_Ror2, Catalytic domain of the Protein Tyrosine
Kinase, Receptor tyrosine kinase-like Orphan Receptor 2.
Protein Tyrosine Kinase (PTK) family; Receptor tyrosine
kinase-like Orphan Receptor 2 (Ror2); catalytic (c)
domain. The PTKc family is part of a larger superfamily
that includes the catalytic domains of other kinases
such as protein serine/threonine kinases, RIO kinases,
and phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Ror
proteins are orphan receptor tyr kinases (RTKs)
containing an extracellular region with
immunoglobulin-like, cysteine-rich, and kringle domains,
a transmembrane segment, and an intracellular catalytic
domain. Ror RTKs are unrelated to the nuclear receptor
subfamily called retinoid-related orphan receptors
(RORs). RTKs are usually activated through ligand
binding, which causes dimerization and
autophosphorylation of the intracellular tyr kinase
catalytic domain. Ror2 plays important roles in skeletal
and heart formation. Ror2-deficient mice show widespread
bone abnormalities, ventricular defects in the heart,
and respiratory dysfunction. Mutations in human Ror2
result in two different bone development genetic
disorders, recessive Robinow syndrome and brachydactyly
type B. Ror2 is also implicated in neural development.
Length = 283
Score = 36.2 bits (83), Expect = 0.060
Identities = 32/128 (25%), Positives = 64/128 (50%), Gaps = 20/128 (15%)
Query: 116 IYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNGRIK----SIVP 171
+ ++A +++L VH+D+ N+L+ ++K++D G +V K S++P
Sbjct: 130 VTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLP 189
Query: 172 VGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLT-GSTPF----NYETLDMT 226
+ +++PE + M G D D+WS GVV +E+ + G P+ N + ++M
Sbjct: 190 I---RWMSPEAI--MYGKFSIDS-----DIWSYGVVLWEVFSYGLQPYCGYSNQDVIEMI 239
Query: 227 YS-SILAC 233
+ +L C
Sbjct: 240 RNRQVLPC 247
>gnl|CDD|236798 PRK10929, PRK10929, putative mechanosensitive channel protein;
Provisional.
Length = 1109
Score = 36.2 bits (84), Expect = 0.072
Identities = 74/316 (23%), Positives = 137/316 (43%), Gaps = 63/316 (19%)
Query: 359 DRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEID----- 413
D Q+ Q+L +AKA+ + + + V ALQ+ ++ L++ S + ++ ID
Sbjct: 24 DEKQITQELEQAKAA-KTPAQAEI-VEALQSALNWLEERKGSLERA-KQYQQVIDNFPKL 80
Query: 414 --RLRQEMVKKESDLVATSSDLVATRHELEE----VRSELKEKENLEKTDDRKLEVCEVS 467
LRQ++ E D + ++T LE+ V S+L EK + + + E+S
Sbjct: 81 SAELRQQL-NNERDEPRSVPPNMSTD-ALEQEILQVSSQLLEKSRQAQQEQDRAR--EIS 136
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAV--AELKQAQTENEALKEKLTSLE-- 523
L L + E + + ++ Q++ N + A+L Q E+ ALK + LE
Sbjct: 137 DSLSQLPQQQTEARRQLNEIERR-LQTLGTPNTPLAQAQLTALQAESAALKALVDELELA 195
Query: 524 -------QEL-KVSEEALATAQNSLDSKLREHQALSNTIESM-QKEMEQSAVRVREMS-- 572
QEL ++ E LD+ L QAL N + S Q+E E++ ++
Sbjct: 196 QLSANNRQELARLRSELAKKRSQQLDAYL---QALRNQLNSQRQREAERALESTELLAEQ 252
Query: 573 ------GISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAK 626
I +++ +R EL A L + ++DL ++++ + QT+++R
Sbjct: 253 SGDLPKSIVAQFKINR----ELSQA-----LNQQAQRMDLIASQQRQAAS--QTLQVRQA 301
Query: 627 SKLEKAEGELTTVREE 642
L T+RE+
Sbjct: 302 ---------LNTLREQ 308
>gnl|CDD|234541 TIGR04320, Surf_Exclu_PgrA, SEC10/PgrA surface exclusion domain.
This model describes a conserved domain found in surface
proteins of a number of Firmutes. Many members have
LPXTG C-terminal anchoring motifs and a substantial
number have the KxYKxGKxW putative sorting signal at the
N-terminus. The tetracycline resistance plasmid pCF10 in
Enterococcus faecalis promotes conjugal plasmid transfer
in response to sex pheromones, but PgrA/Sec10 encoded by
that plasmid, a member of this family, specifically
inhibits the ability of cells to receive homologous
plasmids. The phenomenon is called surface exclusion.
Length = 356
Score = 35.9 bits (83), Expect = 0.078
Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 10/93 (10%)
Query: 475 GELEEQKTATKQWKKDWYQSVKERNA-AVAELKQAQTENEALKEKLTSLEQEL------- 526
L+ + A + D + + A A L AQT A + L + ++EL
Sbjct: 254 NSLKALQAALATAQAD-LAAAQTALNTAQAALTTAQTAYAAAQAALATAQKELANAQAQA 312
Query: 527 -KVSEEALATAQNSLDSKLREHQALSNTIESMQ 558
+ ++ LATAQ +L + + ++
Sbjct: 313 LQTAQNNLATAQAALANAEARLAKAKEALANLN 345
Score = 33.5 bits (77), Expect = 0.36
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)
Query: 483 ATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDS 542
Q A A+L AQT + LT+ + ++ ALATAQ L +
Sbjct: 250 PNTPNSLKALQ--AALATAQADLAAAQTALNTAQAALTTAQTAYAAAQAALATAQKELAN 307
Score = 33.5 bits (77), Expect = 0.37
Identities = 20/95 (21%), Positives = 30/95 (31%), Gaps = 15/95 (15%)
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTE------------- 511
+ L + +L +TA + + AA A L AQ E
Sbjct: 258 ALQAALATAQADLAAAQTALNTAQAALTTAQTAYAAAQAALATAQKELANAQAQALQTAQ 317
Query: 512 --NEALKEKLTSLEQELKVSEEALATAQNSLDSKL 544
+ L + E L ++EALA L K
Sbjct: 318 NNLATAQAALANAEARLAKAKEALANLNADLAKKQ 352
Score = 30.8 bits (70), Expect = 3.1
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 499 NAAVAELKQAQTENEALKEKLTSLEQELKVSEEALA 534
A A L A+ KE L +L +L + AL
Sbjct: 321 ATAQAALANAEARLAKAKEALANLNADLAKKQAALD 356
>gnl|CDD|234331 TIGR03724, arch_bud32, Kae1-associated kinase Bud32. Members of
this protein family are the Bud32 protein associated
with Kae1 (kinase-associated endopeptidase 1) in the
Archaea. In many Archaeal genomes, Kae1 and Bud32 are
fused. The complex is homologous to the Kae1 and Bud32
subunits of the eukaryotic KEOPS complex, an apparently
ancient protein kinase-containing molecular machine
[Unknown function, General].
Length = 199
Score = 34.9 bits (81), Expect = 0.091
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 86 IMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSA 145
+MEY+ G ++E + E+ + V LH G VH D+ N+++
Sbjct: 75 VMEYIEGKPLKDVIEEGNDEL---------LREIGRLVGKLHKAGIVHGDLTTSNIIVRD 125
Query: 146 TGHLKLTDFG 155
L L DFG
Sbjct: 126 -DKLYLIDFG 134
>gnl|CDD|213754 TIGR02971, heterocyst_DevB, ABC exporter membrane fusion protein,
DevB family. Members of this protein family are found
mostly in the Cyanobacteria, but also in the
Planctomycetes. DevB from Anabaena sp. strain PCC 7120
is partially characterized as a membrane fusion protein
of the DevBCA ABC exporter, probably a glycolipid
exporter, required for heterocyst formation. Most
Cyanobacteria have one member only, but Nostoc sp. PCC
7120 has seven members.
Length = 327
Score = 35.6 bits (82), Expect = 0.100
Identities = 36/187 (19%), Positives = 67/187 (35%), Gaps = 12/187 (6%)
Query: 498 RNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESM 557
R AEL A+T+ + K +L + K E A A + ++ A T+ +
Sbjct: 50 RPERTAELDVARTQLDEAKARLAQVRAGAKKGEIAAQRAARAAAKLFKDVAAQQATLNRL 109
Query: 558 QKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNK 617
+ E+E + V +Y + S + L++R + +LE
Sbjct: 110 EAELETAQREVD-------RYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRSEQI 162
Query: 618 DQTIELRAKSKLEKAEGEL----TTVREENKKLKQGKIRLVYSLFKDPQPAQS-KLEKAE 672
D A E E ++ V+ + ++Q + L + K P + K+ E
Sbjct: 163 DGARAALASLAEEVRETDVDLAQAEVKSALEAVQQAEALLELTYVKAPIDGRVLKIHARE 222
Query: 673 GELTTVR 679
GE+
Sbjct: 223 GEVIGSE 229
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 35.2 bits (81), Expect = 0.11
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 19/146 (13%)
Query: 412 IDRLRQEM--VKKESDLVATS-SDLVATRHELEEVRSELKEKENLEKTDDRKL-EVCEVS 467
++RL E+ +KE D S L + E+ + E + L+K ++R L E+ E+
Sbjct: 31 LERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSELDELKKEEERLLDELEELE 90
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
KE + L GEL E + +E+ E Q E LE L+
Sbjct: 91 KEDDDLDGELVELQ--------------EEKEQLENEELQYLREYNLFDRNNLQLEDNLQ 136
Query: 528 VSEEALATAQNSLDSKLREHQALSNT 553
E + N LD KLR+ + T
Sbjct: 137 SLELQYEYSLNQLD-KLRKTNIFNAT 161
>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional.
Length = 294
Score = 35.3 bits (81), Expect = 0.11
Identities = 38/181 (20%), Positives = 74/181 (40%), Gaps = 33/181 (18%)
Query: 11 NVSASDFDIKRFIQQGNFGDIYLVEEKQSH---NTFVMKKVLREKMPN-TIERDIMVKSK 66
+++ ++ I + I G FG +Y + H N V K E + N TI + +V +
Sbjct: 8 DITGKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKI---ENLENETIVMETLVYNN 64
Query: 67 CPYI--VNLFYSFQDMNHVYFIMEYVTGG--------DFVTLLENQPHGYLSESK--ARF 114
I + L+ + +++H+ Y G F+ LLE + + R
Sbjct: 65 IYDIDKIALWKNIHNIDHLGIPKYYGCGSFKRCRMYYRFI-LLEKL---VENTKEIFKRI 120
Query: 115 YIY----------ELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVDKNG 164
++ ++Y+H G H DIKP+N+++ + D+G A+ +G
Sbjct: 121 KCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHG 180
Query: 165 R 165
+
Sbjct: 181 K 181
>gnl|CDD|222417 pfam13851, GAS, Growth-arrest specific micro-tubule binding. This
family is the highly conserved central region of a
number of metazoan proteins referred to as growth-arrest
proteins. In mouse, Gas8 is predominantly a testicular
protein, whose expression is developmentally regulated
during puberty and spermatogenesis. In humans, it is
absent in infertile males who lack the ability to
generate gametes. The localisation of Gas8 in the
motility apparatus of post-meiotic gametocytes and
mature spermatozoa, together with the detection of Gas8
also in cilia at the apical surfaces of epithelial cells
lining the pulmonary bronchi and Fallopian tubes
suggests that the Gas8 protein may have a role in the
functioning of motile cellular appendages. Gas8 is a
microtubule-binding protein localised to regions of
dynein regulation in mammalian cells.
Length = 201
Score = 34.5 bits (80), Expect = 0.11
Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 26/136 (19%)
Query: 436 TRHELEEVRSELKEKENLEKTDDRKL-EVCEVSKE-------LEVLRGELEEQKTATKQW 487
T + LE ++S +E ++K ++ + E+++E L+ E+EE + K +
Sbjct: 22 THNNLELIKSLKEEIAEMKKNEEHNEKLMAEIAQENKRLVEPLKKAEEEVEELRKKLKDY 81
Query: 488 KKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREH 547
+KD LK + + L+++L +L+ E +V E+ + RE
Sbjct: 82 EKD-----------KQSLKNLKARLKELEKELKNLKWESEVLEQRFEKVE-------RER 123
Query: 548 QALSNTIESMQKEMEQ 563
L + E+ ++++Q
Sbjct: 124 DELYDKFEAAIQDVQQ 139
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 35.5 bits (82), Expect = 0.11
Identities = 50/259 (19%), Positives = 106/259 (40%), Gaps = 22/259 (8%)
Query: 437 RHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVK 496
E+ + K +K + E+++ L+ L+ +LEE + A Q +
Sbjct: 160 VKAYRELYQAWLKARQQLKDRQQKEQ--ELAQRLDFLQFQLEELEEADLQ-PGEDEALEA 216
Query: 497 ERN--AAVAELKQA-QTENEALKEKLTSLEQELKVS-EEALATAQNSLDSKLREHQALSN 552
E+ + + +L++ Q AL+ + E L EA + +D LRE L+
Sbjct: 217 EQQRLSNLEKLRELSQNALAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRE---LAE 273
Query: 553 TIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRE 612
+ + E+E++ ++ ++ E D + L E++ +++ R Y +E
Sbjct: 274 QVGNALTEVEEATRELQNYL---DELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEY 330
Query: 613 LETNKDQTIELRAK-SKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEK- 670
E +++ + +L+ ++ L + EE KL++ + +L + A +L K
Sbjct: 331 AE-------KIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKR 383
Query: 671 AEGELTTVREENKKLKVSF 689
E EL + E + V
Sbjct: 384 VEQELKALAMEKAEFTVEI 402
Score = 35.1 bits (81), Expect = 0.14
Identities = 53/258 (20%), Positives = 100/258 (38%), Gaps = 62/258 (24%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSS---------DLVATR-HELEEVRSELKEKENLE 454
++K + L Q +K L D + + ELEE + E E LE
Sbjct: 156 ANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALE 215
Query: 455 KTDDRKL----EVCEVSKE-LEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQ 509
+ ++L ++ E+S+ L LRG+++ Q+ + + L +AQ
Sbjct: 216 A-EQQRLSNLEKLRELSQNALAALRGDVDVQE-----------------GSLLEGLGEAQ 257
Query: 510 TE-----NEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQS 564
+ +L+E + L EEA QN LD +E + + +
Sbjct: 258 LALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDE-----------LEFDPERLNEI 306
Query: 565 AVRVREMSGISEKYEKDRKTLLE-LKSAKERLE-LEVRGYKLDLESTRRELETNKDQTIE 622
R+ ++ + KY + +LE + KE L+ L+ LE+ E++
Sbjct: 307 EERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDE--SLEALEEEVD-------- 356
Query: 623 LRAKSKLEKAEGELTTVR 640
+ + +L+KA L+ +R
Sbjct: 357 -KLEEELDKAAVALSLIR 373
Score = 32.4 bits (74), Expect = 1.1
Identities = 46/215 (21%), Positives = 84/215 (39%), Gaps = 19/215 (8%)
Query: 352 DMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEE 411
D + +++ Q L L LE+ AL+A+ QQ L++ L +
Sbjct: 179 DRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAE----QQRLSNLEKLRELSQNA 234
Query: 412 IDRLRQEMVKKE-SDLVATSSDLVATRHELEEVRSELKEK--ENLEKTDDRKLEVCEVSK 468
+ LR ++ +E S L +A ++ EL E+ L + ++ E+
Sbjct: 235 LAALRGDVDVQEGSLLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLD 294
Query: 469 ELEVLRGELEEQ-------KTATKQWKKDWYQSVKERNAAVAELKQ---AQTENEALKEK 518
ELE L E K +++ + ++ EL Q + EAL+E+
Sbjct: 295 ELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEE 354
Query: 519 LTSLEQELKVSEEALATAQNSLDSKLRE--HQALS 551
+ LE+EL + AL+ + +L + Q L
Sbjct: 355 VDKLEEELDKAAVALSLIRRKAAERLAKRVEQELK 389
Score = 29.3 bits (66), Expect = 9.5
Identities = 16/74 (21%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 354 RHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEI- 412
R + ++L+ + K L+ L S + AL+ +V L+++L LS +
Sbjct: 318 RKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAA 377
Query: 413 DRLRQEMVKKESDL 426
+RL + + ++ L
Sbjct: 378 ERLAKRVEQELKAL 391
>gnl|CDD|114855 pfam06160, EzrA, Septation ring formation regulator, EzrA. During
the bacterial cell cycle, the tubulin-like cell-division
protein FtsZ polymerises into a ring structure that
establishes the location of the nascent division site.
EzrA modulates the frequency and position of FtsZ ring
formation.
Length = 559
Score = 35.6 bits (83), Expect = 0.12
Identities = 40/195 (20%), Positives = 80/195 (41%), Gaps = 35/195 (17%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKK-------EEEIDR 414
L +Q+ + A LE+L + + + +++ + + +L K+ E+ ID+
Sbjct: 256 DLKEQIDQNLALLEEL-----DLDEAEEENEEIEERIDTLYDILEKEVKAKKFVEKNIDK 310
Query: 415 LRQ--EMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEV 472
L E ++++ + D + + L E EL+ LEK ++ E+ + +
Sbjct: 311 LTDFLEHAREQNKQLLLELDRLQQSYTLNE--DELETVRELEK------QLEELEAQYDQ 362
Query: 473 LRGELEEQKTATKQWKKDWYQSVKER-NAAVAELKQAQTENEALKEKLTSLEQELKVSEE 531
L + E+K A Y ++E +L++ + E E L E L L ++ + E
Sbjct: 363 LVERIAEKKVA--------YSELQEELEEIEKQLEEIEKEQEELSESLQGLRKDELEARE 414
Query: 532 ALATAQNSLDSKLRE 546
L KL E
Sbjct: 415 KL----QEYRQKLHE 425
Score = 34.5 bits (80), Expect = 0.27
Identities = 62/344 (18%), Positives = 132/344 (38%), Gaps = 63/344 (18%)
Query: 395 QQDLTSHTSLLSKKEEEIDRLRQEMV------KKESDLVATSSD--------LVATRHE- 439
++ + LL EE+I+++ +E+ +K V D L+A
Sbjct: 100 KKAIKEIEELLDTIEEDIEQILEELNELKESEEKNRKEVEELKDKYRELRKTLLAKSFSY 159
Query: 440 ----------LEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKK 489
L+E+ E ++ L ++ D E + L L E + + ++
Sbjct: 160 GPALDELEKQLDELEEEFEQFVELTESGD----YLEAREVLLKLEEETDALEQKMEEIPP 215
Query: 490 DWYQSVKERNAAVAELKQAQTENEALKEKLT--SLEQELKVSEEALATAQNSLDSKLR-- 545
+ E + ELK E +E+EL+ +E + L +L
Sbjct: 216 LLKELQNEFPDQLEELKAGYREMTEEGYHFDHLDIEKELQDLKEQIDQNLALL-EELDLD 274
Query: 546 ----EHQALSNTIESM----QKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERL-- 595
E++ + I+++ +KE++ + + +++ E R+ +L +RL
Sbjct: 275 EAEEENEEIEERIDTLYDILEKEVKAKKFVEKNIDKLTDFLEHAREQNKQLLLELDRLQQ 334
Query: 596 -------ELE-VRGYKLDLESTRRELETNKDQTIELRAKS------KLEKAEGELTTVRE 641
ELE VR + LE + + ++ I + + +LE+ E +L + +
Sbjct: 335 SYTLNEDELETVRELEKQLEELEAQYDQLVER-IAEKKVAYSELQEELEEIEKQLEEIEK 393
Query: 642 ENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKL 685
E ++L + + L KD A+ KL++ +L ++ +K
Sbjct: 394 EQEELSES----LQGLRKDELEAREKLQEYRQKLHEIKRYLEKS 433
Score = 31.0 bits (71), Expect = 3.0
Identities = 64/326 (19%), Positives = 121/326 (37%), Gaps = 66/326 (20%)
Query: 486 QWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLR 545
+W++ W V + EL + E K + ++ +K EE L T + ++ L
Sbjct: 64 EWRQKWDDIVTNSLPDIEELLF-EAEELNDKFRFLKAKKAIKEIEELLDTIEEDIEQILE 122
Query: 546 EHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE--------LKSAKERLEL 597
E L + E +KE+E+ + +KY + RKTLL L +++L+
Sbjct: 123 ELNELKESEEKNRKEVEE----------LKDKYRELRKTLLAKSFSYGPALDELEKQLD- 171
Query: 598 EVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSL 657
+LE + + L A+ L K E E + ++ +++ L
Sbjct: 172 -------ELEEEFEQFVELTESGDYLEAREVLLKLEEETDALEQKMEEIPPLLKELQNEF 224
Query: 658 FKDPQPAQ-SKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSN 716
P Q +L+ E+T EE + D L+DLK
Sbjct: 225 -----PDQLEELKAGYREMT---EEG----------------YHFDHLDIEKELQDLKEQ 260
Query: 717 YTERESKLRS-----ANEIIGEYETKITALESTMTRS-------ESYCKEMVEYLETLQK 764
+ + L A E E E +I L + + E ++ ++LE ++
Sbjct: 261 IDQNLALLEELDLDEAEEENEEIEERIDTLYDILEKEVKAKKFVEKNIDKLTDFLEHARE 320
Query: 765 NNDILSHDNEQLRKKNNDILSHDNEQ 790
N L + ++L++ + L+ D +
Sbjct: 321 QNKQLLLELDRLQQ--SYTLNEDELE 344
>gnl|CDD|220404 pfam09789, DUF2353, Uncharacterized coiled-coil protein (DUF2353).
Members of this family of uncharacterized proteins have
no known function.
Length = 319
Score = 34.9 bits (80), Expect = 0.13
Identities = 35/176 (19%), Positives = 69/176 (39%), Gaps = 13/176 (7%)
Query: 369 EAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVA 428
+ + + L R L V L+Q ++ + +I LRQ + ++
Sbjct: 66 KRQDLSQLLEKYREENQQLSTDVQELRQ-------RKAELQGDIKLLRQTIAQQRV---- 114
Query: 429 TSSDLVATRHELEEVRSELKEKENL-EKTDDRKLEVCEVSKELEVLRGELEEQKTATKQW 487
R EE + + E L EK + ++ + E E + E +E + +
Sbjct: 115 -EFMGGGVRESFEERNDLVSQLEKLREKCKQLESDLRSLLDEKEEVLMERDEYQRKAHRL 173
Query: 488 KKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSK 543
+ + V ++ EN LKEK+ +LE+E ++ + LA + L++K
Sbjct: 174 NNELSYLLGGDPRRVVDVDALVMENRYLKEKINTLEEESELIKMTLAKYKQMLEAK 229
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA
a protein that suppresses sigma54-dependent
transcription. The PspA protein, a negative regulator of
the Escherichia coli phage shock psp operon, is produced
when virulence factors are exported through secretins in
many Gram-negative pathogenic bacteria and its homologue
in plants, VIPP1, plays a critical role in thylakoid
biogenesis, essential for photosynthesis. Activation of
transcription by the enhancer-dependent bacterial
sigma(54) containing RNA polymerase occurs through ATP
hydrolysis-driven protein conformational changes enabled
by activator proteins that belong to the large AAA(+)
mechanochemical protein family. It has been shown that
PspA directly and specifically acts upon and binds to
the AAA(+) domain of the PspF transcription activator.
Length = 220
Score = 34.7 bits (80), Expect = 0.13
Identities = 34/165 (20%), Positives = 61/165 (36%), Gaps = 15/165 (9%)
Query: 496 KERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSK-LREHQALSNTI 554
+ +A KQ + + E KE+ LE + + AL L + L E L
Sbjct: 44 QALAQVIARQKQLERKLEEQKEQAKKLENK---ARAALTKGNEELAREALAEIATLEKQA 100
Query: 555 ESMQKEMEQSAVRVREMSG--------ISEKYEKDRKTLLELKSAKERLELEVRGYKLDL 606
E+++ ++ Q V ++ I + K LK+AK + +
Sbjct: 101 EALETQLTQQRSAVEQLRKQLAALETKIQQLKAKKTALKARLKAAKAQEAVNTSLGSAST 160
Query: 607 ESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKI 651
ES E +++ E A A EL + ++ + KL+ I
Sbjct: 161 ESATDSFERIEEKIEEREA---RADAAAELASAQDLDAKLEAAGI 202
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 35.4 bits (82), Expect = 0.14
Identities = 40/277 (14%), Positives = 105/277 (37%), Gaps = 9/277 (3%)
Query: 403 SLLSKKEEEIDRLRQEMVKKESDLVATSSDLVAT--RHELEEVRSELKEKENLEKTD--- 457
+ S +E++++L E+ KKE +L + +L++ L+E+E +E+ +
Sbjct: 1095 PIWSLTKEKVEKLNAELEKKEKELEKLKNTTPKDMWLEDLDKFEEALEEQEEVEEKEIAK 1154
Query: 458 DRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKE 517
+++L+ K ++ + +L++++ K+ D + + + + + +
Sbjct: 1155 EQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPD 1214
Query: 518 KLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEK 577
S ++ + S R +N+ +S + E S+ + +
Sbjct: 1215 NKKSNSSGSDQEDDEEQKTKPKKSSVKRLKSKKNNSSKSSEDNDEFSSDDLSKEGKPKNA 1274
Query: 578 YEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELT 637
++ +R + E G T++ + K L A K +K+E +
Sbjct: 1275 PKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKK--KVKKRLEGSLAALKKKKKSEKKTA 1332
Query: 638 TVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGE 674
++ ++KQ S +P + K + + +
Sbjct: 1333 RKKKSKTRVKQASAS--QSSRLLRRPRKKKSDSSSED 1367
Score = 33.9 bits (78), Expect = 0.39
Identities = 55/300 (18%), Positives = 108/300 (36%), Gaps = 27/300 (9%)
Query: 404 LLSKKEEEIDRLRQ------EMVKKESDLV-ATSSDLVATRHELEEVRSELKEKENLEKT 456
LL K E E+ RL ++ E + A DLV +L VR + K+ EK
Sbjct: 1000 LLGKLERELARLSNKVRFIKHVINGELVITNAKKKDLVKELKKLGYVRFKDIIKKKSEKI 1059
Query: 457 DDRKLEVCEVSKELEVLRGELEEQKTATKQW---KKDW---YQSVKERNAAVAELKQAQT 510
+ E E E + E E + + W + V++ NA EL++ +
Sbjct: 1060 TAEEEEGAEEDDEADDEDDEEELGAAVSYDYLLSMPIWSLTKEKVEKLNA---ELEKKEK 1116
Query: 511 ENEALKEKLTSLEQ----ELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAV 566
E E LK T+ + +L EEAL + + ++ + Q L + + ++ + +
Sbjct: 1117 ELEKLKN--TTPKDMWLEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKL 1174
Query: 567 RVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAK 626
+ +E +K +K + S + + + + + DQ + K
Sbjct: 1175 KKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGS--DQEDDEEQK 1232
Query: 627 SKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLK 686
+K +K+ + ++ N D + K + A ++ V+
Sbjct: 1233 TKPKKSSVKRLKSKKNNSSKSSEDND---EFSSDDLSKEGKPKNAPKRVSAVQYSPPPPS 1289
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 34.3 bits (79), Expect = 0.15
Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 410 EEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRS---ELKEKENLEKTDDRKLEVCEV 466
EE +R +QE+ ++ + D+ + ELEE EL+EK E+ + + LE
Sbjct: 1 EEAEREQQELEER---MEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKA- 56
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
ELE LEE+ A+++ ++ V E A VA+L++ + + EA + L+QEL
Sbjct: 57 -DELEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQ---LQQEL 112
Query: 527 KVSEEALATAQNSL 540
+ ++EA A+ L
Sbjct: 113 REAQEAHERARQEL 126
>gnl|CDD|220366 pfam09728, Taxilin, Myosin-like coiled-coil protein. Taxilin
contains an extraordinarily long coiled-coil domain in
its C-terminal half and is ubiquitously expressed. It is
a novel binding partner of several syntaxin family
members and is possibly involved in Ca2+-dependent
exocytosis in neuroendocrine cells. Gamma-taxilin,
described as leucine zipper protein Factor Inhibiting
ATF4-mediated Transcription (FIAT), localises to the
nucleus in osteoblasts and dimerises with ATF4 to form
inactive dimers, thus inhibiting ATF4-mediated
transcription.
Length = 309
Score = 34.7 bits (80), Expect = 0.17
Identities = 58/227 (25%), Positives = 94/227 (41%), Gaps = 27/227 (11%)
Query: 362 QLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVK 421
L Q L++ E L R+ L ++ L++DL +K R E ++
Sbjct: 9 LLNQSLSKLDTPEEKLETLIKRLAELLKEMKRLEKDL-----KKLQK-------RGEQLQ 56
Query: 422 KESD-LVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQ 480
KE D L + S + R +LE + EL +K N K E S E E R EL E+
Sbjct: 57 KEKDKLQSEHSKAILARSKLESLCREL-QKHNKT----LKEENKARSDEEEEKRKELTEK 111
Query: 481 KTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSL 540
+T + +D + N + E ENE L+EKL L ++ ++ E+ +
Sbjct: 112 FQSTLKDIQDQMEEHSNPNHKLCE------ENEELREKLKELIEQYELREQHFEKLLKTK 165
Query: 541 DSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE 587
D + + + A +E Q++ EQ + + I K TL E
Sbjct: 166 DLEQQLNDA---KLEQAQEQAEQEQEKHKREKEILLKEAAQVSTLKE 209
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 33.0 bits (76), Expect = 0.18
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 4/102 (3%)
Query: 462 EVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALK---EK 518
E+ EV L+ R E E ++ KQ +++ + +E ++ + + ENEA + EK
Sbjct: 8 EMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEK 67
Query: 519 LTSLEQELKVS-EEALATAQNSLDSKLREHQALSNTIESMQK 559
E++L+ EE + + L+ E + L +E Q
Sbjct: 68 KAEEEKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEEYQP 109
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA
binding. This is the C-terminal conserved coiled coil
region of a family of TATA element modulatory factor 1
proteins conserved in eukaryotes. The proteins bind to
the TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMF1_TATA_bd is the most conserved
part of the TMFs. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells. The Rab6-binding
domain appears to be the same region as this C-terminal
family.
Length = 121
Score = 32.9 bits (76), Expect = 0.19
Identities = 30/96 (31%), Positives = 51/96 (53%), Gaps = 8/96 (8%)
Query: 387 LQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSE 446
L + + L+ +L S L++ E E D RQE+VK L + +L + E+EE+ E
Sbjct: 22 LSSTLRRLEGELASLKDELARLEAERDEARQEIVK----LTEENEELRELKKEIEELEKE 77
Query: 447 LKEKENLEKTDDRKLEVC-EVSKELEVLRGELEEQK 481
L++ E +T LE+ E S+ +E LR ++ + K
Sbjct: 78 LEDLEQRYET---TLELLGEKSERVEELRADVVDLK 110
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 34.6 bits (80), Expect = 0.19
Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 43/201 (21%)
Query: 301 KRKASPSLKAFQKEGRYLDSALP----LIGISYTGE-------PMGANTNTSSDSTLPPS 349
KRK + S+ ++ EG +L ALP L+G Y E G + + P+
Sbjct: 253 KRKGAVSIGEYRVEG-WLPPALPNLLALLGRGYPPEAIEIFSLEEGIKWFDLTIVSKSPA 311
Query: 350 SEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKE 409
+ D + L+ L+ RV ++ + + ++E
Sbjct: 312 AFDRKK------------------LDWLNPRYMRVDPVE--------VVIENLKPHLEEE 345
Query: 410 EEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKE 469
L EM ++ L + + ++KE + + V EV ++
Sbjct: 346 GATLPLNPEMGERVVPLTKETLIEIE-----RLDFFFFEDKEEVRLKRLANVIVAEVLEK 400
Query: 470 LEVLRGELEEQKTATKQWKKD 490
+ K W K
Sbjct: 401 DAEGLITSDWTKENIIHWVKA 421
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 34.9 bits (80), Expect = 0.20
Identities = 46/219 (21%), Positives = 95/219 (43%), Gaps = 21/219 (9%)
Query: 396 QDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEK 455
QDL + L K +E + +V +E L S + + ++S KE + ++
Sbjct: 524 QDLLDGKADLEKFIQEFSLTLEWVVNQEKSLQDVSVEASEIKKNFLGLKSSEKEINSPDE 583
Query: 456 TDD-------RKLEVCEVSKE------------LEVLRGELEEQKTATKQWKKDWYQSVK 496
+LE + KE LE + +L+E + ++ K + S +
Sbjct: 584 VKGAVCISTLEELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEELKSELDASQE 643
Query: 497 ERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIES 556
+ A +LK E+L+ + LE E K +E +++ ++ L+ + + HQ L
Sbjct: 644 SNSLAETQLKCMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRE 703
Query: 557 MQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERL 595
+++++ + A + M + E+ E+ K E+ +A E+L
Sbjct: 704 LEEKI-ERAEQEENMQKLDEE-EQKIKQEKEIAAAAEKL 740
Score = 30.7 bits (69), Expect = 3.6
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 481 KTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKL-------TSLEQELKVSEEAL 533
TK+W+K + K+ EL +A EN+AL L L +E +E +
Sbjct: 77 TEKTKEWEKVKAELEKKLLELQKELARAAAENDALSRSLQEKSKMIMELSEEKSRAESEI 136
Query: 534 ATAQNSLDSKLREHQALSNTIESMQKEME 562
+ L+S +E+ +L + + KE+E
Sbjct: 137 EDLKARLESAEKENSSLKYEVHVLSKELE 165
>gnl|CDD|222709 pfam14362, DUF4407, Domain of unknown function (DUF4407). This
family of proteins is found in bacteria. Proteins in
this family are typically between 366 and 597 amino
acids in length. There is a single completely conserved
residue R that may be functionally important.
Length = 297
Score = 34.2 bits (79), Expect = 0.21
Identities = 18/105 (17%), Positives = 36/105 (34%), Gaps = 15/105 (14%)
Query: 471 EVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSE 530
+L + EEQ A Q + A AE+ Q E + + ++ + QE +
Sbjct: 113 VLLEIQQEEQAAAQAQVAA---GFRPKIAALTAEIAALQAEIDEAQAEVNAAYQEAQCEA 169
Query: 531 E------------ALATAQNSLDSKLREHQALSNTIESMQKEMEQ 563
E + LD+ + L +++ ++E
Sbjct: 170 EGTGGTGVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQLEA 214
Score = 29.5 bits (67), Expect = 5.9
Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 27/157 (17%)
Query: 401 HTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRK 460
T LL ++EE + + + L A L ++E+ E +
Sbjct: 111 DTVLLEIQQEEQA---AAQAQVAAGFRPKIAALTAEIAAL---QAEIDEAQA-------- 156
Query: 461 LEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKE-RNAAVAELKQAQTENEALKEKL 519
EV+ + + E E K Y+ +E +AA A L+ + +A +L
Sbjct: 157 ----EVNAAYQEAQCEAEGTGGTGVAGKGPVYKEKREKLDAAQARLETLKARLDAAIAQL 212
Query: 520 TSLEQEL------KVSEEALATAQNSLDSKLREHQAL 550
+ + L V+E+ N D L +AL
Sbjct: 213 EAQKAALERNRQAAVAEKQARIEAN--DGLLARLEAL 247
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 34.6 bits (80), Expect = 0.22
Identities = 44/239 (18%), Positives = 82/239 (34%), Gaps = 31/239 (12%)
Query: 367 LAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEE---EIDRLRQEMVKKE 423
L+E L + R+ L +V L+ +L S ++ E+ E++ L +++ ++
Sbjct: 63 LSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKLEERL 122
Query: 424 SDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSK----ELEVLRGELE- 478
S+L DL ELE + + L +L + K + + +LE L G +E
Sbjct: 123 SELDEELEDLEDLLEELEPL-AYLDFDLSLLR--GLKFLLVRLGLVRREKLEALVGVIED 179
Query: 479 EQKTATKQWKKDW---YQSVKERNAAVAELKQAQTENEA----LKEKLTSLEQELKVSEE 531
E + + E V+++ + L EL+
Sbjct: 180 EVALYGENVEASVVIVVAHGAEDLDKVSKILNELGFELYEVPEFDGGPSELISELEEVIA 239
Query: 532 ALATAQNSLDSKLRE-----HQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTL 585
+ SL S+L + L E ++ E V K + TL
Sbjct: 240 EIQDELESLRSELEALAEKIAEELLAVREILEIEKALGDVL--------SKLARTEYTL 290
Score = 31.9 bits (73), Expect = 1.4
Identities = 52/342 (15%), Positives = 99/342 (28%), Gaps = 79/342 (23%)
Query: 430 SSDLVATRHELEEVR-SELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWK 488
++A H+ V +L+E E K ++ L L E+ +
Sbjct: 18 LDPVLAELHDFGLVHLEDLEEGEKGLKELEKLKVAEVAQISLSSLLSEVLDY-------- 69
Query: 489 KDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQ 548
+SVK L E E L+ +L SLE+ +K +E+ + ++ R+ +
Sbjct: 70 ---LRSVKG---LEGRLFILPEEVEKLEAELKSLEEVIKPAEKFS----SEVEELTRKLE 119
Query: 549 ALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLES 608
+ ++ +++E + ++ + R L + L
Sbjct: 120 ERLSELDEELEDLEDLLEELEPLAYLDFDLSLLRGLKFLL---------------VRLGL 164
Query: 609 TRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKL 668
RRE IE + ++ + +V +D L
Sbjct: 165 VRREKLEALVGVIEDEVA--------------LYGENVEASVVIVVAHGAEDLDKVSKIL 210
Query: 669 EKAEGELTTVREENKKLKVSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSAN 728
+ EL V E +
Sbjct: 211 NELGFELYEVPEFDGGPSELI-------------------------------SELEEVIA 239
Query: 729 EIIGEYETKITALESTMTRSESYCKEMVEYLETLQKNNDILS 770
EI E E+ + LE+ + + E LE + D+LS
Sbjct: 240 EIQDELESLRSELEALAEKIAEELLAVREILEIEKALGDVLS 281
>gnl|CDD|216618 pfam01636, APH, Phosphotransferase enzyme family. This family
consists of bacterial antibiotic resistance proteins,
which confer resistance to various aminoglycosides they
include: aminoglycoside 3'-phosphotransferase or
kanamycin kinase / neomycin-kanamycin phosphotransferase
and streptomycin 3''-kinase or streptomycin
3''-phosphotransferase. The aminoglycoside
phosphotransferases inactivate aminoglycoside
antibiotics via phosphorylation. This family also
includes homoserine kinase. This family is related to
fructosamine kinase pfam03881.
Length = 238
Score = 33.7 bits (77), Expect = 0.24
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 129 LGYVHRDIKPDNMLLSATGHLK-LTDFGSAT 158
L VH D+ P N+L+ G + + DF A
Sbjct: 165 LVLVHGDLHPGNLLVDPGGRVTGVIDFEDAG 195
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 34.2 bits (79), Expect = 0.25
Identities = 31/164 (18%), Positives = 73/164 (44%), Gaps = 27/164 (16%)
Query: 402 TSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKL 461
SL++ +EE+D+L +++ + +++ E EE+ LKEK + +
Sbjct: 162 ESLIASAKEELDQLSKKLAELKAE-------------EEEELERALKEKREELLSKLEEE 208
Query: 462 EVCEV-SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLT 520
+ + SKE + + E + ++ +K + + +++ AE + + +NE L
Sbjct: 209 LLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNE-----LA 263
Query: 521 SLEQELKVS-----EEALATAQNSLDSKLREHQALSNTIESMQK 559
EL+ +E + +N +KL L++ ++ ++K
Sbjct: 264 LQAIELQREFNKEIKEKVEEERNGRLAKL---AELNSRLKGLEK 304
>gnl|CDD|240439 PTZ00491, PTZ00491, major vault protein; Provisional.
Length = 850
Score = 34.6 bits (80), Expect = 0.25
Identities = 36/143 (25%), Positives = 57/143 (39%), Gaps = 39/143 (27%)
Query: 474 RGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEAL 533
RG LE QK K K +L + Q E+ A +E + EAL
Sbjct: 680 RGRLERQKMHDK---------AKAEEQRT-KLLELQAESAA-------VESSGQSRAEAL 722
Query: 534 ATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKE 593
A A+ L IE+ + E+EQ+ +R + + + E + LE ++
Sbjct: 723 AEAEARL-------------IEA-EAEVEQAELRAK-----ALRIEAE--AELEKLRKRQ 761
Query: 594 RLELEVRGYKLDLESTR-RELET 615
LELE + +LE + +EL
Sbjct: 762 ELELEYEQAQNELEIAKAKELAD 784
>gnl|CDD|192773 pfam11559, ADIP, Afadin- and alpha -actinin-Binding. This family
is found in mammals where it is localised at cell-cell
adherens junctions, and in Sch. pombe and other fungi
where it anchors spindle-pole bodies to spindle
microtubules. It is a coiled-coil structure, and in
pombe, it is required for anchoring the minus end of
spindle microtubules to the centrosome equivalent, the
spindle-pole body. The name ADIP derives from the family
being composed of Afadin- and alpha -Actinin-Binding
Proteins Localised at Cell-Cell Adherens Junctions.
Length = 149
Score = 32.6 bits (75), Expect = 0.28
Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 9/93 (9%)
Query: 503 AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEME 562
AE+++ Q E LK +L LE+EL + + + L + Q L N E +Q+
Sbjct: 64 AEIERLQNTIERLKTQLEDLERELALLQAKERQLEKKLKT---LEQKLKNEKEEVQR--L 118
Query: 563 QSAVRVREMSGISEKYEKDRKTLLELKSAKERL 595
++ ++ R+ E ++DR E++ KERL
Sbjct: 119 KNIIQQRKTQYNHELKKRDR----EIEKLKERL 147
>gnl|CDD|237847 PRK14879, PRK14879, serine/threonine protein kinase; Provisional.
Length = 211
Score = 33.3 bits (77), Expect = 0.29
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 86 IMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSA 145
+MEY+ G L+ + + + E+ + V LH G +H D+ NM+LS
Sbjct: 77 VMEYIEGEPLKDLINS------NGMEELELSREIGRLVGKLHSAGIIHGDLTTSNMILS- 129
Query: 146 TGHLKLTDFG 155
G + L DFG
Sbjct: 130 GGKIYLIDFG 139
>gnl|CDD|217542 pfam03412, Peptidase_C39, Peptidase C39 family. Lantibiotic and
non-lantibiotic bacteriocins are synthesised as
precursor peptides containing N-terminal extensions
(leader peptides) which are cleaved off during
maturation. Most non-lantibiotics and also some
lantibiotics have leader peptides of the so-called
double-glycine type. These leader peptides share
consensus sequences and also a common processing site
with two conserved glycine residues in positions -1 and
-2. The double- glycine-type leader peptides are
unrelated to the N-terminal signal sequences which
direct proteins across the cytoplasmic membrane via the
sec pathway. Their processing sites are also different
from typical signal peptidase cleavage sites, suggesting
that a different processing enzyme is involved. Peptide
bacteriocins are exported across the cytoplasmic
membrane by a dedicated ATP-binding cassette (ABC)
transporter. The ABC transporter is the maturation
protease and its proteolytic domain resides in the
N-terminal part of the protein. This peptidase domain is
found in a wide range of ABC transporters, however the
presumed catalytic cysteine and histidine are not
conserved in all members of this family.
Length = 131
Score = 32.6 bits (75), Expect = 0.30
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 569 REMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLE 607
RE++G E D +LL L A E+L + + K DL
Sbjct: 35 RELAGTPE----DGTSLLGLLKAAEKLGFKAKAIKADLS 69
>gnl|CDD|219186 pfam06810, Phage_GP20, Phage minor structural protein GP20. This
family consists of several phage minor structural
protein GP20 sequences of around 180 residues in length.
The function of this family is unknown.
Length = 156
Score = 32.7 bits (75), Expect = 0.31
Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Query: 417 QEMVKKESDLVATSSDLVATRHELEEVRSELKE-KENLEKTDDRKLEVCEVSKELEVLRG 475
+E + K D+ + +L++ E K+ L+ D + ++ + K+ E L+
Sbjct: 1 EEQIDKIMAE--YGKDIQNPKSKLDKANEERDSLKKQLKNRDKQIEDLKKKVKDNEELQK 58
Query: 476 ELEEQKTATKQWKKDWYQSVKER---NAAVAELKQAQTENEALKEKLTSLEQELKVSEEA 532
++E+ K K K+++ + + NA LK+A+ N + L + +LK+ ++
Sbjct: 59 KIEKLKQQNKTAKEEYEAKLADTKLNNAIELALKKAKARNAKAVKALLDKD-KLKLDDDG 117
Query: 533 L 533
L
Sbjct: 118 L 118
Score = 29.2 bits (66), Expect = 4.2
Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
K+++ + +L++ KK +K R+ + +LK+ +NE L++K+ L+Q+
Sbjct: 12 GKDIQNPKSKLDKANEERDSLKKQ----LKNRDKQIEDLKKKVKDNEELQKKIEKLKQQN 67
Query: 527 KVSEEALAT--AQNSLDSKL 544
K ++E A L++ +
Sbjct: 68 KTAKEEYEAKLADTKLNNAI 87
>gnl|CDD|115307 pfam06637, PV-1, PV-1 protein (PLVAP). This family consists of
several PV-1 (PLVAP) proteins which seem to be specific
to mammals. PV-1 is a novel protein component of the
endothelial fenestral and stomatal diaphragms. The
function of this family is unknown.
Length = 442
Score = 33.9 bits (77), Expect = 0.32
Identities = 24/103 (23%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 503 AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEME 562
A++++ EN L+ + EQ + ++EA A A+ +++ RE + + Q +E
Sbjct: 292 ADIERVARENADLQRQKLEAEQAAQAAQEAKAKAEK--EAQAREAKLQAECARQTQLALE 349
Query: 563 QSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLD 605
+ A E ++++ E ++ +L R+EL +R LD
Sbjct: 350 EKAALRAERDNLAKELEAKKREAEQL-----RMELAIRISALD 387
>gnl|CDD|227608 COG5283, COG5283, Phage-related tail protein [Function unknown].
Length = 1213
Score = 34.1 bits (78), Expect = 0.34
Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 24/231 (10%)
Query: 516 KEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQS-AVRVREMSGI 574
+ S + ++ N L S +++ +E QK + + + G+
Sbjct: 3 DDNFASGATAIDNNDTIAVKNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGL 62
Query: 575 SEKYEKDRKTLLELKS-----AKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKL 629
SE EK +K +LK + + + + + T +A++KL
Sbjct: 63 SEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYT--------------QAENKL 108
Query: 630 EKAEGELTTVREENKKLKQGKIRLVYS---LFKDPQPAQSKLEKAEGELTTVREENKKLK 686
G+ E+ ++ RL Y+ L K LE+ + T + L+
Sbjct: 109 RSLSGQFGVASEQLMLQQKEIQRLQYAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLR 168
Query: 687 VSFFFTLESNSLFWLDPNTFLSSL-EDLKSNYTERESKLRSANEIIGEYET 736
SF E+ + +L L + L + E + E T
Sbjct: 169 ESFGRQTEALNKQLERTKKVADALTYVLDEAQQKLSQALSARLERLQESRT 219
Score = 31.8 bits (72), Expect = 1.7
Identities = 27/156 (17%), Positives = 58/156 (37%), Gaps = 24/156 (15%)
Query: 506 KQAQTENEALKEKLTSLEQELKVSEEALATAQNSL-DSKLREHQALSNTIESMQKEMEQS 564
A LK + Q K+ E+ ++ L SK + ++ LS +E +K E
Sbjct: 18 TIAVKNINVLKSSIKDSTQFWKMLEKQQKLTKDGLSASKGK-YEGLSEAMEKQKKAYEDL 76
Query: 565 AVRVREMSGISEKYEKDRKTLLELKSAKERLELEVR-------GYKLDLESTRRELE--- 614
+E+ ++ + +K E + + E ++R L ++E++
Sbjct: 77 K---QEVKEVNRATQASKKAYQEYNAQYTQAENKLRSLSGQFGVASEQLMLQQKEIQRLQ 133
Query: 615 -----TNKD----QTIELRAKSKLEKAEGELTTVRE 641
NK + + +K A+ ++ +RE
Sbjct: 134 YAISTLNKSMAAQARLLEQTGNKFGTADAKVVGLRE 169
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 32.6 bits (75), Expect = 0.34
Identities = 20/90 (22%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 496 KERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIE 555
KE AEL++ + E + ++KL Q +SEEA Q L K +E Q +
Sbjct: 42 KEFKKLQAELQKKEKELQKEEQKLQK--QAATLSEEARKAKQQELQQKQQELQQKQQAAQ 99
Query: 556 SMQKEMEQSAVR--VREMSGISEKYEKDRK 583
++ +Q ++ ++ ++ K++
Sbjct: 100 QELQQKQQELLQPIYDKIDKAIKEVAKEKG 129
>gnl|CDD|238103 cd00176, SPEC, Spectrin repeats, found in several proteins involved
in cytoskeletal structure; family members include
spectrin, alpha-actinin and dystrophin; the spectrin
repeat forms a three helix bundle with the second helix
interrupted by proline in some sequences; the repeats
are independent folding units; tandem repeats are found
in differing numbers and arrange in an antiparallel
manner to form dimers; the repeats are defined by a
characteristic tryptophan (W) residue in helix A and a
leucine (L) at the carboxyl end of helix C and separated
by a linker of 5 residues; two copies of the repeat are
present here.
Length = 213
Score = 33.2 bits (76), Expect = 0.36
Identities = 35/184 (19%), Positives = 70/184 (38%), Gaps = 11/184 (5%)
Query: 436 TRHELEEVRSELKEKENLEKT----DDRKLEVCEVSKELEVLRGEL-----EEQKTATKQ 486
+LE V + LK+ E LE ++R + E+ ++L E + ++
Sbjct: 28 YGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQR 87
Query: 487 WKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLRE 546
W++ + + R L Q +A + E+E ++ E L S++ L++
Sbjct: 88 WEELRELAEERRQRLEEALDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELLKK 147
Query: 547 HQALSNTIESMQKEMEQ--SAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKL 604
H+ L +E+ + ++ G + E+ + L EL E L +
Sbjct: 148 HKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEELNERWEELLELAEERQK 207
Query: 605 DLES 608
LE
Sbjct: 208 KLEE 211
Score = 30.5 bits (69), Expect = 2.3
Identities = 36/189 (19%), Positives = 77/189 (40%), Gaps = 10/189 (5%)
Query: 355 HWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEID- 413
+ D + L + +A +L+ RV AL L ++ + ++ EE++
Sbjct: 27 DYGDDLESVEALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQ 86
Query: 414 ---RLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVS--- 467
LR+ ++ L + DL + +++ L+EKE ++D ++ V
Sbjct: 87 RWEELRELAEERRQRL-EEALDLQQFFRDADDLEQWLEEKEAALASEDLGKDLESVEELL 145
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
K+ + L ELE + K + + ++E + E + + E L E+ L + +
Sbjct: 146 KKHKELEEELEAHEPRLKSLNELAEELLEEGHPDADEEIEEKLEE--LNERWEELLELAE 203
Query: 528 VSEEALATA 536
++ L A
Sbjct: 204 ERQKKLEEA 212
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 34.0 bits (78), Expect = 0.38
Identities = 35/157 (22%), Positives = 66/157 (42%), Gaps = 10/157 (6%)
Query: 423 ESDLVATSSDLVATRHELEEVRSELKEKEN-----LEKTDDRKLEVCEVSKELEVLRGEL 477
ES + +E+ ++ E + +EK + E+ + ++ LE L E
Sbjct: 482 ESYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQ 541
Query: 478 EEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQ 537
E+ K +Q ++ +ERN + K+AQ +ALK+++ S+ +ELK + A
Sbjct: 542 EKLKKELEQEMEE--LKERERNKKLELEKEAQEALKALKKEVESIIRELKEKKIHKAKEI 599
Query: 538 --NSLDSKLREHQALS-NTIESMQKEMEQSAVRVREM 571
KL+E + + Q + VR+R
Sbjct: 600 KSIEDLVKLKETKQKIPQKPTNFQADKIGDKVRIRYF 636
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 33.5 bits (77), Expect = 0.39
Identities = 41/206 (19%), Positives = 84/206 (40%), Gaps = 37/206 (17%)
Query: 349 SSEDMRHWKRDRLQLLQQLA--EAKASLEDLSCSRTRVL--ALQAQVSSLQQDLTSHTSL 404
+S D++ ++ QL++ A ++K + + L L+ + +++D L
Sbjct: 110 ASPDIKLLMDNQFQLVKTHARLQSKKTWYEWRMQLLEGLKEGLEENLEGMKRDEE----L 165
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDL--------VATRHELEEVRSELKEKENLEKT 456
L+K I+ ++ ++ KK L + L + ELE+ R EL+
Sbjct: 166 LNKDLNLINSIKPKLRKKLQALKEEIASLRQLADELNLCDPLELEKARQELRS------- 218
Query: 457 DDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEA-- 514
+++ E K+LE L+ EL+E A + E +AE ++ + E
Sbjct: 219 --LSVKISEKRKQLEELQQELQELTIAIEALT----NKKSELLEEIAEAEKIREECRGWS 272
Query: 515 ------LKEKLTSLEQELKVSEEALA 534
LK K++ L++ +L+
Sbjct: 273 AKEISKLKAKVSLLQKLTGWKFLSLS 298
Score = 30.0 bits (68), Expect = 4.5
Identities = 29/138 (21%), Positives = 54/138 (39%), Gaps = 8/138 (5%)
Query: 440 LEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERN 499
LE ++ L+E K D+ L + + ++ +L ++ A K+ Q E N
Sbjct: 145 LEGLKEGLEENLEGMKRDEELLN--KDLNLINSIKPKLRKKLQALKEEIASLRQLADELN 202
Query: 500 AAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQK 559
E E +++L SL ++ + L Q L +AL+N + +
Sbjct: 203 LC------DPLELEKARQELRSLSVKISEKRKQLEELQQELQELTIAIEALTNKKSELLE 256
Query: 560 EMEQSAVRVREMSGISEK 577
E+ ++ E G S K
Sbjct: 257 EIAEAEKIREECRGWSAK 274
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 33.3 bits (76), Expect = 0.41
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Query: 438 HELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRG--ELEEQKTATKQWKKDWYQSV 495
H++E + EL KE L+ V L+ L+ E + K ++ K+ +
Sbjct: 98 HDVEHIDVELVRKE---------LKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQ 148
Query: 496 KERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEAL 533
KE+ + EL++ + E E ++E+L LE E EE L
Sbjct: 149 KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEML 186
Score = 29.5 bits (66), Expect = 6.8
Identities = 30/149 (20%), Positives = 59/149 (39%)
Query: 358 RDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQ 417
R L+ LQ++ E ED + ++ LQ + L ++L + + +E + RL
Sbjct: 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEV 177
Query: 418 EMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGEL 477
E + E L ++ + +E+ ++ E +D K + K++E
Sbjct: 178 ENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKDIEGQGYIY 237
Query: 478 EEQKTATKQWKKDWYQSVKERNAAVAELK 506
E + + Y + R AV EL+
Sbjct: 238 AEDEKEVEILLGTVYIAAPSREDAVEELE 266
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 33.5 bits (78), Expect = 0.41
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 465 EVSKELEVLRGELEEQKTATKQWKK--DWYQSVKE--RNAAVAELKQ-AQTENEALKEKL 519
++SKE ELE A +++K+ + + KE + E+++ A+ E + L+E+L
Sbjct: 36 KLSKE----YAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEELKELEERL 91
Query: 520 TSLEQELKV 528
LE+ELK+
Sbjct: 92 EELEEELKI 100
>gnl|CDD|153339 cd07655, F-BAR_PACSIN, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Protein kinase C and
Casein kinase Substrate in Neurons (PACSIN) proteins.
F-BAR domains are dimerization modules that bind and
bend membranes and are found in proteins involved in
membrane dynamics and actin reorganization. Protein
kinase C and Casein kinase Substrate in Neurons (PACSIN)
proteins, also called Synaptic dynamin-associated
proteins (Syndapins), act as regulators of cytoskeletal
and membrane dynamics. They bind both dynamin and
Wiskott-Aldrich syndrome protein (WASP), and may provide
direct links between the actin cytoskeletal machinery
through WASP and dynamin-dependent endocytosis.
Vetebrates harbor three isoforms with distinct
expression patterns and specific functions. PACSINs
contain an N-terminal F-BAR domain and a C-terminal SH3
domain. F-BAR domains form banana-shaped dimers with a
positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 258
Score = 33.1 bits (76), Expect = 0.45
Identities = 14/101 (13%), Positives = 44/101 (43%), Gaps = 12/101 (11%)
Query: 476 ELEEQ-KTATKQW----------KKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
E E+ A K W KK ++ + K +A + A+++ +++ L+
Sbjct: 116 EAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQD 175
Query: 525 ELKVSEEALATAQNSLDSKLREHQALSNT-IESMQKEMEQS 564
+++ ++ ++ ++ + L + + +E M++ ++
Sbjct: 176 KVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVFDKC 216
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 32.4 bits (74), Expect = 0.47
Identities = 34/128 (26%), Positives = 59/128 (46%), Gaps = 6/128 (4%)
Query: 366 QLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLL---SKKEEEIDRLRQEMVKK 422
Q+ ++ + E LS + + V +LQ L SL +KK EE L +E+ +K
Sbjct: 63 QIDDSISEFESLSKCFSELEKHGFNVQALQSRLNKLLSLKDDQTKKLEERKGLEKEIAEK 122
Query: 423 ESDLVATSSDLVATRHELEEVR---SELKEKENLEKTDDRKLEVCEVSKELEVLRGELEE 479
E S++ ++ E++ + LKEK+ E + +L+ + E++ ELE
Sbjct: 123 EISRQELDSEIAELERKILELQRQAALLKEKKEAEDKEIARLKSEASKIKQELVDAELEF 182
Query: 480 QKTATKQW 487
Q TA W
Sbjct: 183 QTTAAAPW 190
Score = 29.7 bits (67), Expect = 4.1
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 448 KEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQ 507
EKE EK R+ E+ ELE EL+ Q K+ K A E+ +
Sbjct: 115 LEKEIAEKEISRQ-ELDSEIAELERKILELQRQAALLKEKK----------EAEDKEIAR 163
Query: 508 AQTENEALKEKLTSLEQE 525
++E +K++L E E
Sbjct: 164 LKSEASKIKQELVDAELE 181
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 32.7 bits (75), Expect = 0.61
Identities = 24/110 (21%), Positives = 43/110 (39%), Gaps = 11/110 (10%)
Query: 437 RHELEEVRSELKE-----KENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDW 491
+ L+E LKE + LE + K ++ + LE +L++ + +
Sbjct: 146 KEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPT- 204
Query: 492 YQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLD 541
E + A +LK+ E +KL LE+EL+ E + N
Sbjct: 205 -----ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKS 249
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 33.1 bits (76), Expect = 0.61
Identities = 52/223 (23%), Positives = 88/223 (39%), Gaps = 18/223 (8%)
Query: 435 ATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQS 494
E+++VR L+E N K + + K L+V+ + D
Sbjct: 221 LFEEEIKKVREALEELLNPLKPNY----YYKDEKYLDVVPLKAYADLEKLFNEALDEKFE 276
Query: 495 VKERNAAVAEL-KQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNT 553
+ +EL K+ + E + L+ KL E EL+ E+A +LR+ L
Sbjct: 277 RDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKA--------AEELRQKGELLYA 328
Query: 554 IESMQKEMEQSAVRVREMSGISEKYEKD-RKTLLELKSAKERLELEVRGYKLDLESTRRE 612
+ +E +S K E D KT E + +++G K++L+ E
Sbjct: 329 NLQLIEEGLKSVRLADFYGNEEIKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSE 388
Query: 613 LETNKDQTIELRAKSKLEKAEGE--LTTVREENKKLKQGKIRL 653
L+ E AK+ LEKAEG+ + +REE + K +
Sbjct: 389 LK-EAIAYYE-SAKTALEKAEGKKAIEEIREELIEEGLLKSKK 429
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 31.0 bits (71), Expect = 0.64
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 496 KERNAA---VAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLR 545
ERN + + K+ + + EAL ++ L+ ELK E L + LD L
Sbjct: 50 AERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAELRELEAELDKLLL 102
>gnl|CDD|234252 TIGR03545, TIGR03545, TIGR03545 family protein. This model
represents a relatively rare but broadly distributed
uncharacterized protein family, distributed in 1-2
percent of bacterial genomes, all of which have outer
membranes. In many of these genomes, it is part of a
two-gene pair.
Length = 555
Score = 33.2 bits (76), Expect = 0.69
Identities = 27/134 (20%), Positives = 50/134 (37%), Gaps = 15/134 (11%)
Query: 406 SKKEEEIDRLRQEMVKKESDLVATSSDLVA-----TRHELEEVRSELKEKENLEKTDDRK 460
+ I + +KK + L+ T EE+ LK + +K RK
Sbjct: 127 ASAPSSIKEQKSSELKKVDSQLPDPRALLKGEDLKTVETAEEIEKSLKAMQ--QKWKKRK 184
Query: 461 LEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLT 520
++ LEE K + KK ++ E E + + E +A K+K+
Sbjct: 185 KDLPNKQD--------LEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIK 236
Query: 521 SLEQELKVSEEALA 534
S + +L+ ++ L
Sbjct: 237 SAKNDLQNDKKQLK 250
>gnl|CDD|234714 PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed.
Length = 438
Score = 32.9 bits (76), Expect = 0.69
Identities = 31/167 (18%), Positives = 69/167 (41%), Gaps = 37/167 (22%)
Query: 358 RDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQ--DLTSHTSLLSKKEEEIDRL 415
DR +LLQ+L + + L R R+ + ++ L + S LL+++++ +DRL
Sbjct: 260 PDRAELLQRLQQLQQRLA--RAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRL 317
Query: 416 RQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRG 475
+Q + + A L + LE + L + + +
Sbjct: 318 QQRLQR------ALERRLRLAKQRLERLSQRL---------------------QQQNPQR 350
Query: 476 ELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSL 522
+E + +Q ++ ++++ + LK+ + EAL ++L +L
Sbjct: 351 RIERAQQRLEQLEQRLRRAMRRQ------LKRKRQRLEALAQQLEAL 391
>gnl|CDD|226168 COG3642, COG3642, Mn2+-dependent serine/threonine protein kinase
[Signal transduction mechanisms].
Length = 204
Score = 32.3 bits (74), Expect = 0.73
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 86 IMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSA 145
+MEY+ G LE L E+ + V LH G VH D+ N++LS
Sbjct: 77 VMEYIEGELLKDALEEARPDLL---------REVGRLVGKLHKAGIVHGDLTTSNIILSG 127
Query: 146 TGHLKLTDFG 155
+ DFG
Sbjct: 128 GR-IYFIDFG 136
>gnl|CDD|214018 cd12925, iSH2_PIK3R3, Inter-Src homology 2 (iSH2) helical domain of
Class IA Phosphoinositide 3-kinase Regulatory subunit 3,
PIK3R3, also called p55gamma. PI3Ks catalyze the
transfer of the gamma-phosphoryl group from ATP to the
3-hydroxyl of the inositol ring of
D-myo-phosphatidylinositol (PtdIns) or its derivatives.
They play an important role in a variety of fundamental
cellular processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, immune cell
activation, and apoptosis. They are classified according
to their substrate specificity, regulation, and domain
structure. Class IA PI3Ks are heterodimers of a p110
catalytic (C) subunit and a p85-related regulatory (R)
subunit. The R subunit down-regulates PI3K basal
activity, stabilizes the C subunit, and plays a role in
the activation downstream of tyrosine kinases. All R
subunits contain two SH2 domains that flank an
intervening helical domain (iSH2), which binds to the
N-terminal adaptor-binding domain (ABD) of the catalytic
subunit. p55gamma, also called PIK3R3 or p55PIK, also
contains a unique N-terminal 24-amino acid residue (N24)
that interacts with cell cycle modulators to promote
cell cycle progression.
Length = 161
Score = 31.9 bits (72), Expect = 0.73
Identities = 32/125 (25%), Positives = 60/125 (48%), Gaps = 7/125 (5%)
Query: 503 AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEME 562
++ ++ E + L E+ T QE+++ A+ ++ K+ E Q +T E KE
Sbjct: 15 SQYQEKSKEYDRLYEEYTKTSQEIQMKRTAIEAFNETI--KIFEEQC--HTQERYSKEYI 70
Query: 563 QSAVRV---REMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQ 619
+ R +E+ I YEK + L E+ +K RLE +++ LD +++ + K
Sbjct: 71 ERFRREGNEKEIERIMMNYEKLKSRLGEIHDSKMRLEQDLKTQALDNREIDKKMNSIKPD 130
Query: 620 TIELR 624
I+LR
Sbjct: 131 LIQLR 135
>gnl|CDD|132552 TIGR03513, GldL_gliding, gliding motility-associated protein GldL.
This protein family, GldL, is named for the member from
Flavobacterium johnsoniae, which is required for a type
of rapid gliding motility found in certain members of
the Bacteriodetes. However, members are found also in
several members of the Bacteriodetes that appear not to
be motile [Cellular processes, Chemotaxis and motility].
Length = 202
Score = 32.2 bits (73), Expect = 0.75
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 13/122 (10%)
Query: 496 KERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIE 555
++ AA AE A L +KL ++ +E K + + N +++ + L+ +
Sbjct: 71 RKEAAAYAEEPSAVG---LLSQKLDAMLKEAKKDATLMQSLGNGINNFEGAAKTLAPMTD 127
Query: 556 S---MQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRE 612
S +K +EQ + M G++ YE +LK A + ++ S + E
Sbjct: 128 SYAQQKKYIEQMSSLAANMEGLNTIYE------AQLKGASSHADANNE-IAINSSSLKEE 180
Query: 613 LE 614
+E
Sbjct: 181 ME 182
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 32.6 bits (74), Expect = 0.86
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 14/159 (8%)
Query: 440 LEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLR-GELEEQKTATKQWKKDWYQSVKER 498
E+V ELK K+ E+ E K+LE R E+QK A + K+ + ++
Sbjct: 85 EEQVAEELKPKQAAEQ---------ERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQE 135
Query: 499 NAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQ 558
A + + + EA K K + +LK + EA A+ + + E +A + + +
Sbjct: 136 EQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAA-EEAKAKAEAAAAKK 194
Query: 559 K---EMEQSAVRVREMSGISEKYEKDRKTLLELKSAKER 594
K E + +A + + + K EK + E K+A E+
Sbjct: 195 KAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEK 233
>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in
exopolysaccharide biosynthesis [Cell envelope
biogenesis, outer membrane].
Length = 458
Score = 32.4 bits (74), Expect = 0.88
Identities = 46/231 (19%), Positives = 84/231 (36%), Gaps = 52/231 (22%)
Query: 359 DRLQLLQ-QLAEAKASLED-------LSCSRTRVLA------LQAQVSSLQQDLTSHTSL 404
+RL+ L+ +L EA+A +ED +R ++L+ L Q+ S + L +
Sbjct: 202 ERLEELRARLQEAEAQVEDFRAQHGLTDAARGQLLSEQQLSALNTQLQSARARLAQAEAR 261
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVC 464
L+ + + R+ +E V S + R + +VR ++ D E+
Sbjct: 262 LASLLQLLPLGREAAALRE---VLESPTIQDLRQQYAQVRQQI---------ADLSTELG 309
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
+L L +L E R AEL+Q L E
Sbjct: 310 AKHPQLVALEAQLAEL-----------------RQQIAAELRQILASLPNELALLEQQEA 352
Query: 525 ELKVSEEALATAQNSLDSKL--------REHQALSNTIESMQKEMEQSAVR 567
L E A + S KL RE +A + E++ + ++ +++
Sbjct: 353 AL-EKELAQLKGRLSKLPKLQVQLRELEREAEAARSLYETLLQRYQELSIQ 402
>gnl|CDD|173643 cd05077, PTK_Jak1_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Janus kinase 1. Protein
Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak1 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak1 is widely expressed in
many tissues. Many cytokines are dependent on Jak1 for
signaling, including those that use the shared receptor
subunits common gamma chain (IL-2, IL-4, IL-7, IL-9,
IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M,
G-CSF, and IFNs, among others). The many varied
interactions of Jak1 and its ubiquitous expression
suggest many biological roles. Jak1 is important in
neurological development, as well as in lymphoid
development and function. It also plays a role in the
pathophysiology of cardiac hypertrophy and heart
failure. A mutation in the ATP-binding site of Jak1 was
identified in a human uterine leiomyosarcoma cell line,
resulting in defective cytokine induction and antigen
presentation, thus allowing the tumor to evade the
immune system.
Length = 262
Score = 32.2 bits (73), Expect = 0.88
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 21/115 (18%)
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATG-------HLKLTDFG-SATQVDKNGRIKSI 169
+LA A+ YL VH ++ N+LL+ G +KL+D G T + + ++ I
Sbjct: 113 QLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLSRQECVERI 172
Query: 170 VPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYEL-LTGSTPFNYETL 223
++APE +E S + + D WS G +E+ G P +TL
Sbjct: 173 ------PWIAPECVE------DSKNLSIAADKWSFGTTLWEICYNGEIPLKDKTL 215
>gnl|CDD|148617 pfam07111, HCR, Alpha helical coiled-coil rod protein (HCR). This
family consists of several mammalian alpha helical
coiled-coil rod HCR proteins. The function of HCR is
unknown but it has been implicated in psoriasis in
humans and is thought to affect keratinocyte
proliferation.
Length = 739
Score = 32.7 bits (74), Expect = 0.89
Identities = 45/206 (21%), Positives = 90/206 (43%), Gaps = 39/206 (18%)
Query: 396 QDLTSHTSLLSKKEEEIDRLRQE--------------MVKKESDLVATSSDLVATRHELE 441
Q L+ L+S++ +E+ RL +E + + +L A + A R E E
Sbjct: 59 QALSQQAELISRQLQELRRLEEEVRSLRETSLQQKMRLEAQAEELEALAVAEKAGRAEAE 118
Query: 442 EVRSELKEKE----NLEKTDDRKLEVCEVSKELEV--LRGELEEQKTATKQWKKDWYQSV 495
+R+ L E NLE+ ++LE + + ++ L E ++ + + +S+
Sbjct: 119 GLRAALAGAEEVRKNLEEGGQQELEEAQRLHQEQLSSLTQAHLEALSSLRSKAEGLEKSL 178
Query: 496 KE----RNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREH---- 547
+ R L AQ E + L+E+L+ ++EL+ AQ +L +LR++
Sbjct: 179 QSLETRRAGEAKALAAAQAEADTLREQLSKTQEELE--------AQVTLVEQLRKYVGEQ 230
Query: 548 ---QALSNTIESMQKEMEQSAVRVRE 570
++ S E + E+ Q+ ++E
Sbjct: 231 VVAESRSQAWELERGELLQTVKHLQE 256
Score = 32.3 bits (73), Expect = 1.2
Identities = 48/186 (25%), Positives = 80/186 (43%), Gaps = 17/186 (9%)
Query: 462 EVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTS 521
E ++S EL LR E + + Q V +Q + E + L E
Sbjct: 472 EAEDLSTELRQLREERNRLDAELQLSARLIQQEVGRAR------EQGEEERQRLAEVAQQ 525
Query: 522 LEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSG--ISEKYE 579
LE+EL+ S+E+LA+A L++ Q + S+++E+ Q +E+ G + EK
Sbjct: 526 LERELQESQESLASAGAQLEAARAGQQESTEEAASLRQELTQQ----QEVYGQALQEKVA 581
Query: 580 KDRKTLLELKSAKERLELEVRGYK----LDLESTRRELETNKDQTIELRA-KSKLEKAEG 634
+ L E S ER E R + L +R+ K++ ELR + + K EG
Sbjct: 582 EVETRLREQLSDTERRLNEARREHAKAVVSLRQIQRQAAQEKERNQELRRLQEEARKEEG 641
Query: 635 ELTTVR 640
+ + R
Sbjct: 642 QRLSRR 647
>gnl|CDD|218559 pfam05335, DUF745, Protein of unknown function (DUF745). This
family consists of several uncharacterized Drosophila
melanogaster proteins of unknown function.
Length = 188
Score = 31.5 bits (72), Expect = 0.99
Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 12/120 (10%)
Query: 499 NAAVAELKQAQTENEALKEKLTSLEQELKVSEE--ALATAQNSLDSKLREHQALS---NT 553
AA A L Q E L++++ E E V EE +L ++ + + Q NT
Sbjct: 56 KAAEAALAGKQQLVEQLEQEVR--EAEAVVEEESQSLQQSEANATAAQAAAQQAQTQVNT 113
Query: 554 IESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLEL---EVRGYKLDLESTR 610
++++ K + + + +++ +++ E KT L L++AK R+E+ +++ +LD E T+
Sbjct: 114 LKALLKNAQANLENIEQVASGAQQ-ELAEKTQL-LEAAKRRVEVLERQLKEARLDYEKTK 171
Score = 28.8 bits (65), Expect = 8.5
Identities = 24/95 (25%), Positives = 48/95 (50%)
Query: 470 LEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVS 529
+E L E+ E + ++ + QS AA A +QAQT+ LK L + + L+
Sbjct: 69 VEQLEQEVREAEAVVEEESQSLQQSEANATAAQAAAQQAQTQVNTLKALLKNAQANLENI 128
Query: 530 EEALATAQNSLDSKLREHQALSNTIESMQKEMEQS 564
E+ + AQ L K + +A +E ++++++++
Sbjct: 129 EQVASGAQQELAEKTQLLEAAKRRVEVLERQLKEA 163
>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton].
Length = 1463
Score = 32.7 bits (75), Expect = 1.0
Identities = 40/285 (14%), Positives = 93/285 (32%), Gaps = 18/285 (6%)
Query: 360 RLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLR--- 416
RL+ L + + + L S L++ + LL K +
Sbjct: 932 RLKKLLNNIDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKAN 991
Query: 417 QEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCE---VSKELEVL 473
E+ + +L S A + ++++ E L+ + K L+ L
Sbjct: 992 SELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSESTELSILKPLQKL 1051
Query: 474 RGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVS---- 529
+G L + + K + +L Q ++ LK + +
Sbjct: 1052 KGLLLLENNQLQARYKALKLRRENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKP 1111
Query: 530 ---EEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLL 586
+ + L+ + LS + +++ ++ +V E+ G+ +E + + L
Sbjct: 1112 ANVLQFIVAQMIKLNLLQEISKFLSQLVNTLEPVFQKLSVLQLELDGL--FWEANLEALP 1169
Query: 587 E---LKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSK 628
+ E+ + Y + + E+ K++ I L +K
Sbjct: 1170 SPPPFAALSEKRLYQSALYDEKSKLSSSEVNDLKNELIALFSKIF 1214
Score = 32.4 bits (74), Expect = 1.3
Identities = 37/177 (20%), Positives = 72/177 (40%), Gaps = 12/177 (6%)
Query: 617 KDQTIELRAKSKLEKAEGELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELT 676
K +TI L++ ++E AE +L ++ + K + + + + + +L+K L+
Sbjct: 865 KKETIYLQSAQRVELAERQLQELKIDVKSISS-----LKLVNLELESEIIELKK---SLS 916
Query: 677 TVREENKKLKVSFFFTLE---SNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGE 733
+ EN + K L+ +N P+ L +L E ESKL+ +E +
Sbjct: 917 SDLIENLEFKTELIARLKKLLNNIDLEEGPSIEYVKLPELNK-LHEVESKLKETSEEYED 975
Query: 734 YETKITALESTMTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDILSHDNEQ 790
K T L ++ S K + L L K L +QL++ ++ +
Sbjct: 976 LLKKSTILVREGNKANSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSAS 1032
Score = 31.6 bits (72), Expect = 2.3
Identities = 31/143 (21%), Positives = 48/143 (33%), Gaps = 14/143 (9%)
Query: 427 VATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATK- 485
V + L L K + + + C E+ + ELEE A K
Sbjct: 1295 VGLFNALRTKASSLR-----WKSATEVNYNSEELDDWCR-EFEISDVDEELEELIQAVKV 1348
Query: 486 -QWKKDWYQSVKERNAAVAELKQAQTEN----EALKEKLTSLEQELKVSEEALATAQ--N 538
Q KD + E A L A+ +N +K +L +E+ EAL Q
Sbjct: 1349 LQLLKDDLNKLDELLDACYSLNPAEIQNLKSRYDPADKENNLPKEILKKIEALLIKQELQ 1408
Query: 539 SLDSKLREHQALSNTIESMQKEM 561
E + + I S +K +
Sbjct: 1409 LSLEGKDETEVHLSEIFSEEKSL 1431
>gnl|CDD|165291 PHA02988, PHA02988, hypothetical protein; Provisional.
Length = 283
Score = 32.0 bits (73), Expect = 1.0
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
Query: 195 YTGSCDLWSIGVVSYELLTGSTPFNYETLDMTYSSI 230
YT D++S+GVV +E+ TG PF ++T I
Sbjct: 199 YTIKDDIYSLGVVLWEIFTGKIPFE----NLTTKEI 230
>gnl|CDD|234342 TIGR03752, conj_TIGR03752, integrating conjugative element protein,
PFL_4705 family. Members of this protein family are
found occasionally on plasmids such as the Pseudomonas
putida toluene catabolic TOL plasmid pWWO_p085. Usually,
however, they are found on the bacterial main chromosome
in regions flanked by markers of conjugative transfer
and/or transposition [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 472
Score = 32.3 bits (74), Expect = 1.1
Identities = 22/93 (23%), Positives = 46/93 (49%), Gaps = 16/93 (17%)
Query: 494 SVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNT 553
VKE +A+L ENEALK + L++ + S+D +++ QA+ +
Sbjct: 67 EVKELRKRLAKLIS---ENEALKAENERLQKR-----------EQSIDQQIQ--QAVQSE 110
Query: 554 IESMQKEMEQSAVRVREMSGISEKYEKDRKTLL 586
+ + KE+EQ +++ G+ ++ ++ +L
Sbjct: 111 TQELTKEIEQLKSERQQLQGLIDQLQRRLAGVL 143
Score = 30.0 bits (68), Expect = 6.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 753 KEMVEYLETLQKNNDILSHDNEQLRKKNNDI 783
KE+ + L L N+ L +NE+L+K+ I
Sbjct: 69 KELRKRLAKLISENEALKAENERLQKREQSI 99
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 32.7 bits (74), Expect = 1.1
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 29/121 (23%)
Query: 446 ELKEKENLEKTDDRKLEVCEVSKELEV-LRGELEEQKTATKQWKKDWYQSVKERNAAVAE 504
+L+E N E T ++ ++ELE + G ++ SV N E
Sbjct: 3836 DLEELANEEDTANQSDLDESEARELESDMNGVTKD--------------SVVSEN----E 3877
Query: 505 LKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQS 564
++ EN+ L E++ + ++L NSL+ KL + + +E+ QK EQS
Sbjct: 3878 NSDSEEENQDLDEEVNDIPEDLS----------NSLNEKLWDEPNEEDLLETEQKSNEQS 3927
Query: 565 A 565
A
Sbjct: 3928 A 3928
>gnl|CDD|133207 cd05076, PTK_Tyk2_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinase, Tyrosine kinase 2. Protein
Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2);
pseudokinase domain (repeat 1). The PTKc (catalytic
domain) family to which this subfamily belongs, is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Tyk2 is a
member of the Janus kinase (Jak) subfamily of proteins,
which are cytoplasmic (or nonreceptor) tyr kinases
containing an N-terminal FERM domain, followed by a Src
homology 2 (SH2) domain, a pseudokinase domain, and a
C-terminal tyr kinase domain. The pseudokinase domain
shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Tyk2 is widely expressed in
many tissues. It is involved in signaling via the
cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12,
IL-13, and IL-23. It mediates cell surface urokinase
receptor (uPAR) signaling and plays a role in modulating
vascular smooth muscle cell (VSMC) functional behavior
in response to injury. Tyk2 is also important in
dendritic cell function and T helper (Th)1 cell
differentiation. A homozygous mutation of Tyk2 was found
in a patient with hyper-IgE syndrome (HIES), a primary
immunodeficiency characterized by recurrent skin
abscesses, pneumonia, and elevated serum IgE. This
suggests that Tyk2 may play important roles in multiple
cytokine signaling involved in innate and adaptive
immunity.
Length = 274
Score = 31.8 bits (72), Expect = 1.2
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 21/114 (18%)
Query: 118 ELAQAVQYLHGLGYVHRDIKPDNMLLSATG-------HLKLTDFG-SATQVDKNGRIKSI 169
+LA A+ YL VH ++ N+LL+ G +KL+D G S T + + R++ I
Sbjct: 125 QLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALSREERVERI 184
Query: 170 VPVGTPEYVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYEL-LTGSTPFNYET 222
++APE + G + + + D WS G E+ G P T
Sbjct: 185 ------PWIAPECVP------GGNSLSTAADKWSFGTTLLEICFDGEVPLKERT 226
>gnl|CDD|223914 COG0845, AcrA, Membrane-fusion protein [Cell envelope biogenesis,
outer membrane].
Length = 372
Score = 32.0 bits (72), Expect = 1.2
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
Query: 471 EVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSE 530
V +G+L + + + Q+ + A A L A+ + + KL ++ VS+
Sbjct: 87 RVKKGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKL--AAEKAAVSQ 144
Query: 531 EALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVR 567
L AQ L + +A + S + +E + +
Sbjct: 145 AELDAAQALLRAAEALVEAAQAALASAKLNLEYTRIT 181
Score = 29.7 bits (66), Expect = 5.9
Identities = 24/182 (13%), Positives = 54/182 (29%), Gaps = 19/182 (10%)
Query: 360 RLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEM 419
+ QLL +L + L + ++ QA ++ + + L+ ++ + + E+
Sbjct: 90 KGQLLARLDPSAVLQAALDQAEAQLARAQALLAPAELGDLQREAKLAAEKAAVS--QAEL 147
Query: 420 VKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEE 479
++ L A + + A + L + L+ V G+L
Sbjct: 148 DAAQALLRAAEALVEAAQAALASAKLNLEYTRITAPISGVIGAR-------LVRVGQLVS 200
Query: 480 QKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNS 539
A + A L E + Q++ V+ A +
Sbjct: 201 AGQAL---------ATIADLDPAAALWVLAAVLERDLLAVKV-GQKVTVTLAAGPDQLFA 250
Query: 540 LD 541
Sbjct: 251 GT 252
>gnl|CDD|113356 pfam04582, Reo_sigmaC, Reovirus sigma C capsid protein.
Length = 326
Score = 31.8 bits (72), Expect = 1.2
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 367 LAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDL 426
L +AKA+L L T V ALQ V SL +L + +S + I L+ + +D+
Sbjct: 72 LDDAKATLNGL---ITTVQALQTSVDSLSSELADLSLTVSAHDAAISDLQTTVHANSTDI 128
Query: 427 VATSSDLVA 435
S + A
Sbjct: 129 SNLKSSVSA 137
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 32.2 bits (74), Expect = 1.2
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 23/102 (22%)
Query: 551 SNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTR 610
+ IE M K+ E+ A +K RK +E K+ E + S
Sbjct: 503 DDEIERMVKDAEEYAAE-----------DKKRKERIEAKNEAEEY----------VYSLE 541
Query: 611 RELETNKDQTIELRAKSKLEKAEGELTTVRE-ENKKLKQGKI 651
+ L+ D+ + K K+E+A L E E+K+ + K
Sbjct: 542 KSLKEEGDK-LPEADKKKVEEAIEWLKEELEGEDKEEIEAKT 582
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 32.0 bits (73), Expect = 1.3
Identities = 30/154 (19%), Positives = 63/154 (40%), Gaps = 7/154 (4%)
Query: 397 DLTSHTSLLSK---KEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENL 453
H LL + KE + ++ RQE+ + E + + + E+ E E + +
Sbjct: 191 SFEDHQELLQEEYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGE 250
Query: 454 EKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENE 513
E++DD S+ + + ++KT ++ K+ + KE E KQ + +
Sbjct: 251 EESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKE---KRRKELEREAKEEKQLKKKLA 307
Query: 514 ALKEKLTSLEQELKVSEEALATAQNSLDSKLREH 547
L +L + +E+ E+A A + + +
Sbjct: 308 QL-ARLKEIAKEVAQKEKARARKKEQRKERGEKK 340
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 31.9 bits (72), Expect = 1.3
Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 2/173 (1%)
Query: 408 KEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVS 467
+EEE + R+E + E T S+ + EE + E KE E E +++
Sbjct: 112 EEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEE--EEKPKRGSLEE 169
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
E + +L+ + + + Q + + KQ + E + K E+
Sbjct: 170 NNGEFMTHKLKHTENTFSRGGAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKV 229
Query: 528 VSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEK 580
+ EE Q D K RE + E +++ ++A + +++ +K
Sbjct: 230 LEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSEDK 282
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 32.4 bits (75), Expect = 1.3
Identities = 16/82 (19%), Positives = 33/82 (40%), Gaps = 18/82 (21%)
Query: 350 SEDMRHWKRDRLQLLQQLAEA-KASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKK 408
E + ++ LL++LA KA +L RV AL ++ L
Sbjct: 689 GEAALEYLNEQEALLKELAALLKAKPSELP---ERVEALLEELKEL-------------- 731
Query: 409 EEEIDRLRQEMVKKESDLVATS 430
E+E+++L+ ++ + +
Sbjct: 732 EKELEQLKAKLAAAAAGDLLAQ 753
Score = 29.3 bits (67), Expect = 9.4
Identities = 15/56 (26%), Positives = 22/56 (39%)
Query: 470 LEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQE 525
LE L + K K + + A + ELK+ + E E LK KL +
Sbjct: 693 LEYLNEQEALLKELAALLKAKPSELPERVEALLEELKELEKELEQLKAKLAAAAAG 748
>gnl|CDD|130337 TIGR01270, Trp_5_monoox, tryptophan 5-monooxygenase, tetrameric.
This model describes tryptophan 5-monooxygenase, a
member of the family of tetrameric, biopterin-dependent
aromatic amino acid hydroxylases found in metazoans. It
is closely related to tetrameric
phenylalanine-4-hydroxylase and tyrosine
3-monooxygenase, and more distantly related to the
monomeric phenylalanine-4-hydroxylase found in some
Gram-negative bacteria [Energy metabolism, Amino acids
and amines].
Length = 464
Score = 32.1 bits (73), Expect = 1.3
Identities = 31/121 (25%), Positives = 50/121 (41%), Gaps = 17/121 (14%)
Query: 657 LFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWL---DPNTF------- 706
L DP AQ E L E+ KKL +FFT+E F L D F
Sbjct: 304 LLADPSFAQFSQEIGLASLGASEEDIKKLATLYFFTIE----FGLCKQDDEQFKVYGAGL 359
Query: 707 LSSLEDLKSNYTERESKLRSANEIIGEYETKITALESTMTRSESY---CKEMVEYLETLQ 763
LSS+ +L+ + + + E E IT ++ + S+ ++M E+ T++
Sbjct: 360 LSSVAELQHALSGSAKIKPFDPDRVCEQECLITTFQNAYFYTRSFEEAKEKMREFTNTIK 419
Query: 764 K 764
+
Sbjct: 420 R 420
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 32.2 bits (74), Expect = 1.3
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 409 EEEIDRLRQ--EMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEV 466
+E+ D L++ ++K +L+ L+ ELE+ LK+K + D
Sbjct: 711 QEQEDLLKEIASLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELADLLSNAKAE 770
Query: 467 S-KELEVLRGELEE 479
++VL E++
Sbjct: 771 EIGGVKVLAKEVDG 784
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 32.2 bits (73), Expect = 1.3
Identities = 42/187 (22%), Positives = 71/187 (37%), Gaps = 32/187 (17%)
Query: 365 QQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEE---IDRLRQEMVK 421
Q + ++SL SC R ++ + +S ++DL T + S E + + V+
Sbjct: 398 QAVVRTRSSLSSWSCMGPRRRSVGSVANSKKEDLPEATHVTSSVNSESLVTEVKTTKSVE 457
Query: 422 KESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQK 481
+S+ ++ + +E+E L D V S E EV GEL
Sbjct: 458 HKSESSSSDGS----------GHDDEEEEEPLLSED----RVITSSVEEEVTEGEL---- 499
Query: 482 TATKQWKKDWYQSVKERNAAVAELK-QAQTENEALKEKLTSLEQELKVSEEALATAQNSL 540
WY+ KE E+ QAQ E A +++T E L + E+ + S
Sbjct: 500 ---------WYELEKELQRQETEVDAQAQEEEAAAAKEITEEENVLAKAVESKTSI-TSS 549
Query: 541 DSKLREH 547
D +
Sbjct: 550 DLSESQQ 556
>gnl|CDD|240158 cd05119, RIO, RIO kinase family, catalytic domain. The RIO kinase
catalytic domain family is part of a larger superfamily,
that includes the catalytic domains of other kinases
such as the typical serine/threonine/tyrosine protein
kinases (PKs), aminoglycoside phosphotransferase,
choline kinase, and phosphoinositide 3-kinase (PI3K).
RIO kinases are atypical protein serine kinases present
in archaea, bacteria and eukaryotes. Serine kinases
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine residues in protein substrates. RIO
kinases contain a kinase catalytic signature, but
otherwise show very little sequence similarity to
typical PKs. The RIO catalytic domain is truncated
compared to the catalytic domains of typical PKs, with
deletions of the loops responsible for substrate
binding. Most organisms contain at least two RIO
kinases, RIO1 and RIO2. A third protein, RIO3, is
present in multicellular eukaryotes. In yeast, RIO1 and
RIO2 are essential for survival. They function as
non-ribosomal factors necessary for late 18S rRNA
processing. RIO1 is also required for proper cell cycle
progression and chromosome maintenance. The biological
substrates for RIO kinases are still unknown.
Length = 187
Score = 31.3 bits (72), Expect = 1.4
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 14/95 (14%)
Query: 68 PYIVNLFYSFQDMNHVYFIMEYVTGGDFV-TLLENQPHGYLSESKARFYIYELAQAVQYL 126
P +N HV +ME++ G L++ L E Y L +
Sbjct: 84 PIDLN--------RHV-LVMEFIGGDGIPAPRLKDVR---LLEDPEELYDQILELMRKLY 131
Query: 127 HGLGYVHRDIKPDNMLLSATGHLKLTDFGSATQVD 161
G VH D+ N+L+ G + + D A ++D
Sbjct: 132 REAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEID 165
>gnl|CDD|224116 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 31.8 bits (73), Expect = 1.4
Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 22/116 (18%)
Query: 495 VKERNAAVAELKQAQTENEALKEKLTSLEQEL-KVSEE-ALATAQ--NSLDSKLRE-HQA 549
+K+RNA LKQ Q + L +Q+L ++ E A A A+ N+L + HQ
Sbjct: 158 LKQRNAL---LKQLQGDYAWLD----VWDQQLAELGAEIAAARAEYLNALAPLAEKIHQL 210
Query: 550 LSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLD 605
+ES+ S I E Y L L +ER +L RGY L
Sbjct: 211 FLPELESLSIFYRGSVDVTAWE--IEEDY------LEALAKRRER-DLA-RGYTLV 256
>gnl|CDD|217817 pfam03961, DUF342, Protein of unknown function (DUF342). This
family of bacterial proteins has no known function. The
proteins are in the region of 500-600 amino acid
residues in length.
Length = 450
Score = 31.8 bits (73), Expect = 1.5
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
Query: 442 EVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAA 501
E++ ELKE E K + +LE ++ K L+ L + Q K+ ++
Sbjct: 331 ELKEELKELEEELKELEEELE--KIKKLLKKLPKKARGQLPPEKR---------EQLEKL 379
Query: 502 VAELKQAQTENEALKEKLTSLEQELK 527
+ ++ E E L+E+L L++EL+
Sbjct: 380 LETKEKLSEELEELEEELKELKEELE 405
Score = 30.3 bits (69), Expect = 4.5
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Query: 360 RLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEM 419
+++ E K L++L + L+ ++ +++ L L K ++ ++E
Sbjct: 322 EIEVGVDFPELKEELKEL---EEELKELEEELEKIKKLLKK---LPKKARGQLPPEKREQ 375
Query: 420 VKKESDLVATSSDLVATRHELEEVRSELKEK 450
++K L+ T L ELEE ELKE+
Sbjct: 376 LEK---LLETKEKLSEELEELEEELKELKEE 403
Score = 29.9 bits (68), Expect = 6.0
Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 512 NEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREM 571
LKE+L LE+ELK EE L + L KL + + ++E +
Sbjct: 329 FPELKEELKELEEELKELEEELEKIKKLLK-KLPKKA--RGQLPPEKREQLEK------- 378
Query: 572 SGISEKYEKDRKTLLELKSAKERLELEVRGYKLD 605
+ E EK + L EL+ + L+ E+ +
Sbjct: 379 --LLETKEKLSEELEELEEELKELKEELESLYSE 410
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 31.5 bits (72), Expect = 1.5
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 30/177 (16%)
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
K+++ L EL++ + ++ ++ + A ++A+ E +L ++ LE++L+
Sbjct: 1 KKIKQLEEELDKAEERLEEAQE-------KLEEAEKRAEKAEAEVASLNRRIQLLEEDLE 53
Query: 528 VSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE 587
SEE LATA KL E + ++ E +K +E R + + ++ LE
Sbjct: 54 RSEERLATAL----EKLEEAEKAADESERGRKVLE-----NRSLK------DDEKMEQLE 98
Query: 588 --LKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREE 642
LK AKE E R Y+ E R+ + D +E RA+ + E AE ++ + EE
Sbjct: 99 AQLKEAKEIAEEADRKYE---EVARKLVVVEGD--LE-RAEERAEAAESKIVELEEE 149
Score = 29.9 bits (68), Expect = 4.8
Identities = 50/231 (21%), Positives = 98/231 (42%), Gaps = 18/231 (7%)
Query: 388 QAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSEL 447
+ ++ Q+ L K E E+ L + + E DL + L +LEE
Sbjct: 14 EERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATALEKLEEAEKAA 73
Query: 448 KEKENLEKTDDRKLEVCEVSKE--LEVLRGELEEQKTATKQWKKDWYQSVKERNAAV-AE 504
E E K LE + + +E L +L+E K ++ + Y+ V + V +
Sbjct: 74 DESERGRKV----LENRSLKDDEKMEQLEAQLKEAKEIAEEADRK-YEEVARKLVVVEGD 128
Query: 505 LKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQS 564
L++A+ EA + K+ LE+ELKV L + + S + + + I + ++++++
Sbjct: 129 LERAEERAEAAESKIVELEEELKVVGNNLKSLEVSEEKASQREDSYEEKIRDLTEKLKEA 188
Query: 565 AVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELET 615
R E +++ +L+ +RLE E+ K ++ EL+
Sbjct: 189 ETR----------AEFAERSVQKLEKEVDRLEDELLAEKEKYKAISEELDQ 229
>gnl|CDD|132062 TIGR03017, EpsF, chain length determinant protein EpsF. Sequences
in this family of proteins are members of the chain
length determinant family (pfam02706) which includes the
wzc protein from E.coli. This family of proteins are
homologous to the EpsF protein of the methanolan
biosynthesis operon of Methylobacillus species strain
12S. The distribution of this protein appears to be
restricted to a subset of exopolysaccharide operons
containing a syntenic grouping of genes including a
variant of the EpsH exosortase protein. Exosortase has
been proposed to be involved in the targetting and
processing of proteins containing the PEP-CTERM domain
to the exopolysaccharide layer.
Length = 444
Score = 31.7 bits (72), Expect = 1.6
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 36/197 (18%)
Query: 435 ATRHELEEVRSELKE--KEN-LEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDW 491
A R +L +S+L +E + +D+R L+V E ++ EL Q A + D
Sbjct: 182 ALREDLARAQSKLSAYQQEKGIVSSDER-LDV-ERAR-----LNELSAQLVAAQAQVMD- 233
Query: 492 YQSVKERNA----AVAE------LKQAQTENEALKEKLTSLEQELKVSEEALATAQ---N 538
S KE + A+ E ++ +T+ + KL L Q L + AQ N
Sbjct: 234 -ASSKEGGSSGKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEIN 292
Query: 539 SLDSKLREHQA-LSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLEL 597
SL S+L +++++ + S + + + + E E + +LEL ++ + +
Sbjct: 293 SLKSQLNAEIKKVTSSVGT------NSRILKQREAELREALENQKAKVLELNRQRDEMSV 346
Query: 598 EVRGYKLDLESTRRELE 614
R D+E+ +R +
Sbjct: 347 LQR----DVENAQRAYD 359
>gnl|CDD|178335 PLN02734, PLN02734, glycyl-tRNA synthetase.
Length = 684
Score = 31.6 bits (72), Expect = 1.6
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 471 EVLRGELEE-QKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVS 529
+ LR L E Q T Q + +++K A AE+ A + +ALK + ++LE+EL
Sbjct: 3 DSLRDALAEKQAAVTAQ--GNAVRALKASKADKAEIDAAIEKLKALKLEKSALEKEL--- 57
Query: 530 EEALATAQNSLDSKLREHQALSNTIE 555
+ A+ + SK QA+ NT+E
Sbjct: 58 QAAVGAGGDGAASKEAFRQAVVNTLE 83
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase.
Length = 572
Score = 31.9 bits (72), Expect = 1.7
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 4/40 (10%)
Query: 495 VKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALA 534
VKER VA+LK A+ A KE++T+ ELK+++E+LA
Sbjct: 244 VKERGEVVAQLKAAK----ASKEEITAAVAELKIAKESLA 279
>gnl|CDD|191851 pfam07798, DUF1640, Protein of unknown function (DUF1640). This
family consists of sequences derived from hypothetical
eukaryotic proteins. A region approximately 100 residues
in length is featured.
Length = 177
Score = 30.7 bits (70), Expect = 1.7
Identities = 30/121 (24%), Positives = 57/121 (47%), Gaps = 16/121 (13%)
Query: 380 SRTRVLALQAQVSSLQQ--DLTSHTS-LLSKKEEEIDRLRQEMVKKESDLVATSSDLVAT 436
S+ V Q + + QQ D S L S ++ E L+ E K ++DL + L
Sbjct: 40 SKDMVTKEQQEKTEYQQKVDFAKLKSELQSLEKSEFANLQAENEKLKNDLEKLKNRL--- 96
Query: 437 RHELEEVRSELKEKENLEK------TDDRKLEVCEVSKELEV----LRGELEEQKTATKQ 486
R E+ +V + ++ NLEK + +++L++ E +++ L+ +LE K T +
Sbjct: 97 RDEITKVTAGVRLDLNLEKGRIREESAEQELKIKETDTKIDTEIAGLKTQLESVKLDTIK 156
Query: 487 W 487
+
Sbjct: 157 Y 157
>gnl|CDD|236993 PRK11820, PRK11820, hypothetical protein; Provisional.
Length = 288
Score = 31.3 bits (72), Expect = 1.8
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
Query: 513 EALKEKLTSLEQELKVSEEALATAQNSL-DSKLREHQALSNTIESMQKEMEQSAVRVRE- 570
L+ + LE AL A + L + + RE AL + +E ++
Sbjct: 115 GVLEAEEEDLEALWAALLAALDEALDDLIEMREREGAALKADLLQRLDAIEALVAKIEAL 174
Query: 571 MSGISEKY-EKDRKTLLELKSA--KERLELEV 599
I E+Y E+ R+ L EL + RLE EV
Sbjct: 175 APEILEEYRERLRERLEELLGELDENRLEQEV 206
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 31.8 bits (72), Expect = 1.8
Identities = 67/341 (19%), Positives = 145/341 (42%), Gaps = 31/341 (9%)
Query: 357 KRDRLQLLQQLAEAKASLEDLSCSRTRVLALQA-QVSSLQQDLTSHTSLLSKKEEEIDRL 415
+R+ QQLA + D+S R LA L+ D + + L+ + + R
Sbjct: 292 RRELYTSRQQLAAEQYRHVDMS----RELAELNGAEGDLEADYQAASDHLNLVQTAL-RQ 346
Query: 416 RQEMVKKESDLVATSSDLVATRHELEEVRSELKEK--ENLEKTDDRKLEVCEVSKELEVL 473
++++ + ++DL +L E EV E E+ EN + + +LEV E+ +L
Sbjct: 347 QEKIERYQADL----EELTIRLEEQNEVVEEANERQEENEARAEAAELEVDELKSQLADY 402
Query: 474 RGELEEQKTATKQWKKDWYQSVKER----------NAAVAELKQAQTENEALKEKLTSLE 523
+ L+ Q+T Q+++ + + ++A L+ Q + E EKL SLE
Sbjct: 403 QQALDVQQTRAIQYQQAIAALERAKELCHLPDLTADSAEEWLETFQAKEEEATEKLLSLE 462
Query: 524 QELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRK 583
Q++ +++ A + + + A++ + + + + + +RE E+ +
Sbjct: 463 QKMSMAQ----AAHSQFEQAYQLVVAIAGEL-ARSEAWDVARELLREGPDQRHLAEQVQP 517
Query: 584 TLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIEL---RAKSKLEKAEGELTTVR 640
+ L ++RL + +L + +R+ + + +E ++ +E ++ R
Sbjct: 518 LRMRLSELEQRLRQQQSAERLLADFCKRQGKNLDAEELEALHQELEALIESLSDSVSNAR 577
Query: 641 EENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREE 681
E+ L+Q + +L + Q A L A+ L + E+
Sbjct: 578 EQRMALRQEQEQLQSRIQSLMQRAPVWL-AAQNALEQLSEQ 617
Score = 31.4 bits (71), Expect = 2.5
Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 16/160 (10%)
Query: 474 RGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEAL 533
R L+ +++++ Y S ++ A E L LE + + + + L
Sbjct: 282 RVHLD----QALEFRRELYTSRQQLAAEQYRHVDMSRELAELNGAEGDLEADYQAASDHL 337
Query: 534 ATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKE 593
Q +L Q IE Q ++E+ +R+ E +E E+ + E ++ E
Sbjct: 338 NLVQTAL-----RQQ---EKIERYQADLEELTIRLEEQ---NEVVEEANERQEENEARAE 386
Query: 594 RLELEVRGYKLDLESTRRELETNKDQTIEL-RAKSKLEKA 632
ELEV K L ++ L+ + + I+ +A + LE+A
Sbjct: 387 AAELEVDELKSQLADYQQALDVQQTRAIQYQQAIAALERA 426
Score = 30.2 bits (68), Expect = 5.4
Identities = 79/405 (19%), Positives = 143/405 (35%), Gaps = 78/405 (19%)
Query: 414 RLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVL 473
R+E+ L A V EL EL E + D + S L ++
Sbjct: 290 EFRRELYTSRQQLAAEQYRHVDMSRELA----ELNGAEGDLEADYQA-----ASDHLNLV 340
Query: 474 RGELEEQKTATKQWKKDWYQS--------VKERNAAVAELKQAQTENEALKEKLTSLEQE 525
+ L +Q+ + YQ+ ++E+N V E + Q ENEA E + E E
Sbjct: 341 QTALRQQEKIER------YQADLEELTIRLEEQNEVVEEANERQEENEARAE---AAELE 391
Query: 526 LKVSEEALATAQNSLDSK----LREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKD 581
+ + LA Q +LD + ++ QA+ + R +E+ + +
Sbjct: 392 VDELKSQLADYQQALDVQQTRAIQYQQAI------------AALERAKELCHLPDLTADS 439
Query: 582 RKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKA-------EG 634
+ LE AKE E+T + L + ++ A S+ E+A G
Sbjct: 440 AEEWLETFQAKE------------EEATEKLLSLEQKMSMAQAAHSQFEQAYQLVVAIAG 487
Query: 635 ELTTVREENKKLKQGKIRLVYS---LFKDPQPAQSKLEKAEGELTTVREENKKLK----- 686
EL R E + + +R L + QP + +L + E L + + L
Sbjct: 488 ELA--RSEAWDVARELLREGPDQRHLAEQVQPLRMRLSELEQRLRQQQSAERLLADFCKR 545
Query: 687 VSFFFTLESNSLFWLDPNTFLSSLEDLKSNYTERESKLRSANEIIGEYETKITALEST-- 744
E + + SL D SN E+ LR E + +++I +L
Sbjct: 546 QGKNLDAEELEALHQELEALIESLSDSVSNAREQRMALRQEQE---QLQSRIQSLMQRAP 602
Query: 745 --MTRSESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDILSHD 787
+ + + + E + D+ + + L ++ + D
Sbjct: 603 VWLAAQNALEQLSEQSGEEFTDSQDVTEYMQQLLEREREATVERD 647
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 31.6 bits (72), Expect = 1.8
Identities = 35/143 (24%), Positives = 65/143 (45%), Gaps = 22/143 (15%)
Query: 471 EVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSE 530
E+L E +Q+ ++ +++ Q +ER L Q + + +A EKL +LE +L+ E
Sbjct: 59 ELLLRERNQQRQEARREREE-LQREEER------LVQKEEQLDARAEKLDNLENQLEERE 111
Query: 531 EALATAQNSLDSK-------------LREHQALSNTIESMQKEM-EQSAVRVREMSGISE 576
+AL+ + L+ L QA ++ + E+ E+ A RV+++
Sbjct: 112 KALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVKKIEE-EA 170
Query: 577 KYEKDRKTLLELKSAKERLELEV 599
E +RK L A +R+ E
Sbjct: 171 DLEAERKAQNILAQAMQRIASET 193
>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases 2 and 3.
Protein Tyrosine Kinase (PTK) family; Janus kinase 2
(Jak2) and Jak3; pseudokinase domain (repeat 1). The
PTKc (catalytic domain) family to which this subfamily
belongs, is part of a larger superfamily that includes
the catalytic domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Jak2 and
Jak3 are members of the Janus kinase (Jak) subfamily of
proteins, which are cytoplasmic (or nonreceptor) tyr
kinases containing an N-terminal FERM domain, followed
by a Src homology 2 (SH2) domain, a pseudokinase domain,
and a C-terminal tyr kinase domain. The pseudokinase
domain shows similarity to tyr kinases but lacks crucial
residues for catalytic activity and ATP binding. It
modulates the kinase activity of the C-terminal
catalytic domain. Jaks are crucial for cytokine receptor
signaling. They are activated by autophosphorylation
upon cytokine-induced receptor aggregation, and
subsequently trigger downstream signaling events such as
the phosphorylation of signal transducers and activators
of transcription (STATs). Jak2 is widely expressed in
many tissues while Jak3 is expressed only in
hematopoietic cells. Jak2 is essential for the signaling
of hormone-like cytokines such as growth hormone,
erythropoietin, thrombopoietin, and prolactin, as well
as some IFNs and cytokines that signal through the IL-3
and gp130 receptors. Jak3 binds the shared receptor
subunit common gamma chain and thus, is essential in the
signaling of cytokines that use it such as IL-2, IL-4,
IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice
results in an embryonic lethal phenotype with multiple
defects including erythropoietic and cardiac
abnormalities. It is the only Jak gene that results in a
lethal phenotype when disrupted in mice. A mutation in
the pseudokinase domain of Jak2, V617F, is present in
many myeloproliferative diseases, including almost all
patients with polycythemia vera, and 50% of patients
with essential thrombocytosis and myelofibrosis. Jak3 is
important in lymphoid development and myeloid cell
differentiation. Inactivating mutations in Jak3 have
been reported in humans with severe combined
immunodeficiency (SCID).
Length = 258
Score = 31.4 bits (71), Expect = 1.8
Identities = 50/220 (22%), Positives = 85/220 (38%), Gaps = 49/220 (22%)
Query: 25 QGNFGDIY------LVEEKQSHNTFVMKKVLREKMPNTIERDIMVKSKCPYIVNLFYSFQ 78
QG F I+ + + + H T V+ KVL + N E S
Sbjct: 5 QGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASM----------MS 54
Query: 79 DMNHVYFIMEY---VTGGDFVTLLENQPHG----YLSESKARFYIY-------ELAQAVQ 124
++H + ++ Y V G + + + E G YL ++K I +LA A+
Sbjct: 55 QLSHKHLVLNYGVCVCGDESIMVQEYVKFGSLDTYLKKNKNLINISWKLEVAKQLAWALH 114
Query: 125 YLHGLGYVHRDIKPDNMLLS-----ATGH---LKLTDFGSATQVDKNGRIKSIVPVGTPE 176
+L G H ++ N+LL TG+ +KL+D G + V + +P
Sbjct: 115 FLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLPKEILLERIP----- 169
Query: 177 YVAPEVLEWMEGNHGSDGYTGSCDLWSIGVVSYELLTGST 216
+V PE +E + + D WS G +E+ +G
Sbjct: 170 WVPPECIE------NPQNLSLAADKWSFGTTLWEIFSGGD 203
>gnl|CDD|190576 pfam03245, Phage_lysis, Bacteriophage lysis protein. This protein
is involved in host lysis. This family is not considered
to be a peptidase according to the MEROPs database.
Length = 125
Score = 30.0 bits (68), Expect = 1.9
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 10/61 (16%)
Query: 356 WKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRL 415
+KR R + +L A A++ED+ + V AL A+ HT L+ + E DRL
Sbjct: 5 YKRQRDKATSELRAANATIEDMQARQRDVAALDAK----------HTKELADAKAENDRL 54
Query: 416 R 416
R
Sbjct: 55 R 55
>gnl|CDD|233791 TIGR02231, TIGR02231, conserved hypothetical protein. This family
consists of proteins over 500 amino acids long in
Caenorhabditis elegans and several bacteria (Pseudomonas
aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans,
etc.). The function is unknown.
Length = 525
Score = 31.6 bits (72), Expect = 1.9
Identities = 34/155 (21%), Positives = 62/155 (40%), Gaps = 18/155 (11%)
Query: 423 ESDLVATSSDLVATR---HELEEVRSELKEKEN-LEKTDDRKLEVCEVSKELEVLRGELE 478
S + ++ +R L E+R +++E E L +DR + ++K LE +R L
Sbjct: 53 ASLVTVSTWRERTSRPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLT 112
Query: 479 EQKTATKQWKKDWYQSVKERNAAVAELKQA----QTENEALKEKLTSLEQELKVSEEALA 534
E S K + E QA +E E L + E+ ++ E+ L+
Sbjct: 113 EPIK----------DSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQLS 162
Query: 535 TAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVR 569
QN L++ L S+T+ + E + +
Sbjct: 163 ELQNELNALLTGKSQRSHTVLVRLEAPEDAEAELN 197
>gnl|CDD|206365 pfam14197, Cep57_CLD_2, Centrosome localisation domain of PPC89.
The N-terminal region of the fission yeast spindle pole
body protein PPC89 has low similarity to the human Cep57
protein. The CLD or centrosome localisation domain of
Cep57 and PPC89 is found at the N-terminus. This region
localises to the centrosome internally to gamma-tubulin,
suggesting that it is either on both centrioles or on a
centromatrix component. This N-terminal region can also
multimerise with the N-terminus of other Cep57
molecules. The C-terminal part, Family Cep57_MT_bd,
pfam06657, is the microtubule-binding region of Cep57
and PPC89.
Length = 69
Score = 28.8 bits (65), Expect = 2.0
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 510 TENEALKEKLTSLEQELKVSEEALA-------TAQNSLDSKLREHQALSNTIESMQKEME 562
EN L+ +L S +++ V E L +A L E Q L E+++KE+E
Sbjct: 5 AENLTLRNRLDSATRKVAVHEIELKRLNRERDSALRQLGVAYLECQELKAENEALRKELE 64
Score = 27.7 bits (62), Expect = 4.4
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 386 ALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRS 445
L+A+ +L+ L S T ++ E E+ RL +E L + + E E +R
Sbjct: 2 RLEAENLTLRNRLDSATRKVAVHEIELKRLNRERDSALRQLGVAYLECQELKAENEALRK 61
Query: 446 ELKEKE 451
EL+E
Sbjct: 62 ELEELR 67
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 30.2 bits (69), Expect = 2.1
Identities = 22/89 (24%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 499 NAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDS-----KLREHQALSNT 553
A A KQ + E + + +L LE+EL+ +E L +L K +E Q
Sbjct: 14 PAGKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQE 73
Query: 554 IESMQKEMEQSAVRVR--EMSGISEKYEK 580
+ Q++++Q + + E+ I +K K
Sbjct: 74 FQRKQQKLQQDLQKRQQEELQKILDKINK 102
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 31.2 bits (71), Expect = 2.1
Identities = 23/105 (21%), Positives = 45/105 (42%), Gaps = 11/105 (10%)
Query: 439 ELEEVRSELK---EKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSV 495
L E+ EL+ E E L + ++ K E + +E++ L E++ + +
Sbjct: 7 ALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELL--------DEL 58
Query: 496 KERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSL 540
+ + AA E + E E K + L+ ++ALA + +L
Sbjct: 59 EAKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEERKAL 103
Score = 29.2 bits (66), Expect = 8.4
Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 10/106 (9%)
Query: 473 LRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEA 532
LR L E ++ +D E+ A E + E +ALKE++ L+ E+ EE
Sbjct: 4 LREALAELAKELRKLTED------EKLAEAEE---EKAEYDALKEEIDKLDAEIDRLEEL 54
Query: 533 LATAQNSLDSKLREHQALSNTIESMQKEMEQSA-VRVREMSGISEK 577
L + + E+ + E A +R + + E+
Sbjct: 55 LDELEAKPAASGEGGGGEEEEEEAKAEAAEFRAYLRGGDDALAEER 100
>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the
Protein Tyrosine Kinases, Janus kinases. Protein
Tyrosine Kinase (PTK) family; Janus kinase (Jak)
subfamily; pseudokinase domain (repeat1). The Jak
subfamily is composed of Jak1, Jak2, Jak3, TYK2, and
similar proteins. The PTKc (catalytic domain) family to
which this subfamily belongs, is part of a larger
superfamily that includes the catalytic domains of other
kinases such as protein serine/threonine kinases, RIO
kinases, and phosphoinositide 3-kinase (PI3K). PTKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to tyrosine (tyr) residues in protein substrates.
Jak subfamily proteins are cytoplasmic (or nonreceptor)
tyr kinases containing an N-terminal FERM domain,
followed by a Src homology 2 (SH2) domain, a
pseudokinase domain, and a C-terminal catalytic tyr
kinase domain. The pseudokinase domain shows similarity
to tyr kinases but lacks crucial residues for catalytic
activity and ATP binding. It modulates the kinase
activity of the C-terminal catalytic domain. Most Jaks
are expressed in a wide variety of tissues, except for
Jak3, which is expressed only in hematopoietic cells.
Jaks are crucial for cytokine receptor signaling. They
are activated by autophosphorylation upon
cytokine-induced receptor aggregation, and subsequently
trigger downstream signaling events such as the
phosphorylation of signal transducers and activators of
transcription (STATs). Jaks are also involved in
regulating the surface expression of some cytokine
receptors. The Jak-STAT pathway is involved in many
biological processes including hematopoiesis,
immunoregulation, host defense, fertility, lactation,
growth, and embryogenesis.
Length = 259
Score = 30.9 bits (70), Expect = 2.2
Identities = 32/142 (22%), Positives = 54/142 (38%), Gaps = 19/142 (13%)
Query: 86 IMEYVTGGDFVTLLENQPHGYLSESKARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSA 145
+ EYV G L + + +S +LA A+ YL VH ++ N+L++
Sbjct: 78 VEEYVKFGPLDVFLHREKNN-VSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVAR 136
Query: 146 TGH-------LKLTDFGSATQVDKNGRIKSIVPVGTPEYVAPEVLEWMEGNHGSDGYTGS 198
G +KL+D G V +P ++APE + + +
Sbjct: 137 YGLNEGYVPFIKLSDPGIPITVLSREERVERIP-----WIAPECIRNGQASLTIAA---- 187
Query: 199 CDLWSIGVVSYELLT-GSTPFN 219
D WS G E+ + G P +
Sbjct: 188 -DKWSFGTTLLEICSNGEEPLS 208
>gnl|CDD|238345 cd00632, Prefoldin_beta, Prefoldin beta; Prefoldin is a hexameric
molecular chaperone complex, composed of two
evolutionarily related subunits (alpha and beta), which
are found in both eukaryotes and archaea. Prefoldin
binds and stabilizes newly synthesized polypeptides
allowing them to fold correctly. The hexameric
structure consists of a double beta barrel assembly with
six protruding coiled-coils. The alpha prefoldin
subunits have two beta hairpin structures while the beta
prefoldin subunits (this CD) have only one hairpin that
is most similar to the second hairpin of the alpha
subunit. The prefoldin hexamer consists of two alpha and
four beta subunits and is assembled from the beta
hairpins of all six subunits. The alpha subunits
initially dimerize providing a structural nucleus for
the assembly of the beta subunits. In archaea, there is
usually only one gene for each subunit while in
eukaryotes there two or more paralogous genes encoding
each subunit adding heterogeneity to the structure of
the hexamer.
Length = 105
Score = 29.3 bits (66), Expect = 2.3
Identities = 24/107 (22%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 386 ALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDL------VATRHE 439
AQ+ LQQ L ++ +++ E + +E + +A +++ V + E
Sbjct: 3 EQLAQLQQLQQQL--QAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQE 60
Query: 440 LEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQ 486
EE R+ELKE+ + +L + + ++ E L+ +L+E + +Q
Sbjct: 61 KEEARTELKERL-----ETIELRIKRLERQEEDLQEKLKELQEKIQQ 102
>gnl|CDD|151039 pfam10473, Cenp-F_leu_zip, Leucine-rich repeats of kinetochore
protein Cenp-F/LEK1. Cenp-F, a centromeric kinetochore,
microtubule-binding protein consisting of two
1,600-amino acid-long coils, is essential for the full
functioning of the mitotic checkpoint pathway. There are
several leucine-rich repeats along the sequence of LEK1
that are considered to be zippers, though they do not
appear to be binding DNA directly in this instance.
Length = 140
Score = 30.2 bits (68), Expect = 2.3
Identities = 39/147 (26%), Positives = 75/147 (51%), Gaps = 10/147 (6%)
Query: 496 KERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIE 555
K++ + +LK+++ E + LK+K+ +LE+EL++SEE ++ E + L IE
Sbjct: 3 KKQLHVLEKLKESEREADLLKDKVENLERELEMSEENQELVILEAENSKAEVETLKTKIE 62
Query: 556 SMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERL-ELEVRGYKLDLESTRRELE 614
M + + + E+ ++ + EK+ T +L+ +ER+ ELE E+ E E
Sbjct: 63 EMAESL-----KDLELDLVTVRSEKENLT-KQLQEKQERVSELEKL--NSSTENLLEEKE 114
Query: 615 TNKDQTIELRAKSKLEKAEGELTTVRE 641
K Q E +K+ +E + +L + E
Sbjct: 115 QEKIQMKE-ESKTAVEMLQTQLKELNE 140
>gnl|CDD|221514 pfam12297, EVC2_like, Ellis van Creveld protein 2 like protein.
This family of proteins is found in eukaryotes. Proteins
in this family are typically between 571 and 1310 amino
acids in length. There are two conserved sequence
motifs: LPA and ELH. EVC2 is implicated in Ellis van
Creveld chondrodysplastic dwarfism in humans. Mutations
in this protein can give rise to this congenital
condition. LIMBIN is a protein which shares around 80%
sequence homology with EVC2 and it is implicated in a
similar condition in bovine chondrodysplastic dwarfism.
Length = 429
Score = 31.3 bits (71), Expect = 2.3
Identities = 42/215 (19%), Positives = 81/215 (37%), Gaps = 36/215 (16%)
Query: 398 LTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSD---------LVATRHELEEVRSELK 448
LT+ +L ++K+ E R+ ++++ + + L+ T H LE+ L+
Sbjct: 222 LTAECNLETRKKMEAQHQREMAEMEQAEELLKRAPEREAVECSSLLDTLHGLEQ--EHLQ 279
Query: 449 EKENLEKTDD-----RKLEVCE-------VSKELE--VLRGELEEQKTATKQWKKDWYQS 494
L++ +D R+L V + +L+ +GEL+ ++ + + Q
Sbjct: 280 RSLLLQQEEDFAKAHRQLAVFQRVELHSIFFTQLKSATFKGELKPEEAKSLLQEYSKIQE 339
Query: 495 VKERNAAVAE------LKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQ 548
E + L + + E L + L S E + AT +L K+R
Sbjct: 340 TIEELMDFFQASQRYHLSERFAQREYLVKALQSQESRVSGLLNTAATQLTNLIQKMRRAG 399
Query: 549 ALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRK 583
L M E Q EM + ++ + D K
Sbjct: 400 YLDEEQMEMLLERAQ-----TEMFSVRQRLDNDLK 429
>gnl|CDD|219047 pfam06473, FGF-BP1, FGF binding protein 1 (FGF-BP1). This family
consists of several mammalian FGF binding protein 1.
Fibroblast growth factors (FGFs) play important roles
during fetal and embryonic development. Fibroblast
growth factor-binding protein (FGF-BP) 1 is a secreted
protein that can bind fibroblast growth factors (FGFs) 1
and 2.
Length = 229
Score = 30.6 bits (69), Expect = 2.4
Identities = 34/155 (21%), Positives = 57/155 (36%), Gaps = 26/155 (16%)
Query: 329 YTGEPMGANTNTSSDSTLPPSSEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVLALQ 388
YTG P S L ++ ++WK Q+L++L + K + ED +TRV
Sbjct: 80 YTGNPT---------SCLAYKAKPKQYWK----QILRELRKQKNACEDPKVLKTRVCRKA 126
Query: 389 AQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELK 448
S L+Q + T S+ +E + S EE + +
Sbjct: 127 FPESHLKQ--VTSTLEGSEGPR-----------QEPRSPSPSEHDKGKEKSSEEKKLKKD 173
Query: 449 EKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTA 483
+ KT KL C+ ++ E++K A
Sbjct: 174 SNSGVTKTKATKLPECKPTQAGVEDEDLEEQRKLA 208
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 31.3 bits (71), Expect = 2.4
Identities = 30/144 (20%), Positives = 56/144 (38%), Gaps = 25/144 (17%)
Query: 441 EEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNA 500
EE+ +KE E ++ D++K E+ + E E L +E+Q + K D
Sbjct: 544 EEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISD---------- 593
Query: 501 AVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKE 560
A+ + + + L+ L+S + + S+ K ++ Q S I +
Sbjct: 594 --ADKDELKQKITKLRSTLSSEDVD-------------SIKDKTKQLQEASWKISQQAYK 638
Query: 561 MEQSAVRVREMSGISEKYEKDRKT 584
S + E S SE+ E+
Sbjct: 639 QGNSDNQQSEQSTNSEESEEKNDN 662
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 31.0 bits (71), Expect = 2.4
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 19/102 (18%)
Query: 440 LEEVRSELKEKENLEK--------TDDRKLEVCEVSKELEVLRGELEEQKTATKQWKK-- 489
LE++ S L+ E LE +D + ++SKE ELE +++KK
Sbjct: 6 LEKLESLLERYEELEALLSDPEVISDPDEYR--KLSKEY----AELEPIVEKYREYKKAQ 59
Query: 490 DWYQSVKE--RNAAVAELKQ-AQTENEALKEKLTSLEQELKV 528
+ + KE E+++ A+ E + L+ K+ LE+ELK+
Sbjct: 60 EDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELKI 101
Score = 29.9 bits (68), Expect = 5.0
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 4/96 (4%)
Query: 387 LQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKE----SDLVATSSDLVATRHELEE 442
L ++ SL + +LLS E D + KE +V + + +LE+
Sbjct: 5 LLEKLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLED 64
Query: 443 VRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELE 478
+ L E+++ E + + E+ E+ ++E L EL+
Sbjct: 65 AKEMLAEEKDPEMREMAEEEIKELEAKIEELEEELK 100
>gnl|CDD|233230 TIGR01000, bacteriocin_acc, bacteriocin secretion accessory
protein. This family represents an accessory protein
that works with the bacteriocin maturation and ABC
transport secretion protein described by TIGR01193
[Transport and binding proteins, Other].
Length = 457
Score = 31.2 bits (71), Expect = 2.4
Identities = 27/159 (16%), Positives = 66/159 (41%), Gaps = 12/159 (7%)
Query: 499 NAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQ 558
N +A+++ +E + +K + + + ++ L + D KL+++QAL N I +
Sbjct: 143 NGYLAQVESLTSETQQQNDKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISNGT 202
Query: 559 KEMEQS---------AVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLEST 609
K + +++ S +K + L ++ ++L+ + Y++
Sbjct: 203 KVANFNPYQSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKSIASYQVQKAGL 262
Query: 610 RRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQ 648
+ +N + +K K + +L V++E L Q
Sbjct: 263 TKSTASNYASS--QNSKLAQLKEQ-QLAKVKQEITDLNQ 298
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 31.5 bits (72), Expect = 2.4
Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
+ +E+ L+ +LE Q Q + +E A + + + + L+ +L L++
Sbjct: 146 ALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQE 205
Query: 525 ELKVSEEALATAQNSLDSKLREHQA 549
+ A+ S + K + +
Sbjct: 206 K---------AAETSQERKQKRKEI 221
Score = 31.1 bits (71), Expect = 3.0
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 503 AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEME 562
L Q E LK++L +E S+ +L + L+ +E Q+E+E
Sbjct: 142 NLLHALQQEVLTLKQQLELQAREKAQSQALAEAQ----QQELVALEGLAAELEEKQQELE 197
Query: 563 QSAVRVREMSGISEKYEKDRKTLLELKSAKERLEL 597
+++E + + + K ++ + ++AK RLEL
Sbjct: 198 AQLEQLQEKAAETSQERKQKRKEITDQAAK-RLEL 231
>gnl|CDD|234853 PRK00877, hisD, bifunctional histidinal dehydrogenase/ histidinol
dehydrogenase; Reviewed.
Length = 425
Score = 31.2 bits (72), Expect = 2.4
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 525 ELKVSEEALATAQNSLDSKLRE--HQALSNTIESM-QKEMEQSAVRVREMSGI 574
L+VSEE + A LD +LRE +A N I + + + +S V G+
Sbjct: 62 SLRVSEEEIEAAYERLDPELREALEEAAEN-IRAFHEAQKPES-WDVETAPGV 112
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 31.3 bits (71), Expect = 2.5
Identities = 24/103 (23%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 476 ELEEQKTATKQWKKDW----YQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEE 531
++++Q+ T + K+ Q+ K++ AEL+ T+ + L++++ LE+E++
Sbjct: 521 DVQKQENQTDEAPKENNANSAQARKDQKRREAELR---TQTQPLRKEIARLEKEMEKLNA 577
Query: 532 ALATAQNSL-DSKLREHQALSNTIESMQKEME-QSAVRVREMS 572
LA A+ L DS+L + + +Q++ +S + EM+
Sbjct: 578 QLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMA 620
>gnl|CDD|130078 TIGR01005, eps_transp_fam, exopolysaccharide transport protein
family. The model describes the exopolysaccharide
transport protein family in bacteria. The transport
protein is part of a large genetic locus which is
associated with exopolysaccharide (EPS) biosynthesis.
Detailed molecular characterization and gene fusion
analysis revealed atleast seven gene products are
involved in the overall regulation, which among other
things, include exopolysaccharide biosynthesis, property
of conferring virulence and exopolysaccharide export
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 754
Score = 31.1 bits (70), Expect = 2.5
Identities = 54/263 (20%), Positives = 98/263 (37%), Gaps = 22/263 (8%)
Query: 310 AFQKEGRYLDSALP-LIGISYTGEPMGAN--TNTSSDSTLPPSSEDMRHWKRDR-LQLLQ 365
F+ E L +A+P I +Y A +NT++ L P D+ RD ++
Sbjct: 160 EFRSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAA 219
Query: 366 QLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESD 425
A++ DL LA Q Q++ L +L+ + + E D +++ + S
Sbjct: 220 YRAQS-----DLLMGNNATLATQ-QLAELNTELSRARANRAAAEGTADSVKKALQNGGSL 273
Query: 426 LVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKEL-EVLRGELEEQKTAT 484
V ++++++ +LE++ L+E R+ E+ +L + A
Sbjct: 274 DVL--PEVLSSQLKLEDLIQRLRE---------RQAELRATIADLSTTMLANHPRVVAAK 322
Query: 485 KQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKL 544
Q E L +A + +L S +LK + Q LD+
Sbjct: 323 SSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQLKAASAQAGEQQVDLDALQ 382
Query: 545 REHQALSNTIESMQKEMEQSAVR 567
R+ A ES Q+A R
Sbjct: 383 RDAAAKRQLYESYLTNYRQAASR 405
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 30.3 bits (69), Expect = 2.5
Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
S+ L L+ LE+ K ++ K+ + + ++ + E L E+L LE+EL
Sbjct: 61 SQALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELL-EELKQLEKEL 119
Query: 527 KVSEEALATAQNS 539
K + L + +
Sbjct: 120 KKLKAELEKYEKN 132
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 31.2 bits (71), Expect = 2.6
Identities = 15/80 (18%), Positives = 39/80 (48%)
Query: 451 ENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQT 510
+++EK ++ + K L+ + E ++ K + + ++ +A V E K+ +
Sbjct: 277 KSMEKLQEKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKK 336
Query: 511 ENEALKEKLTSLEQELKVSE 530
+ E K+++ LE+ ++ E
Sbjct: 337 KEEKKKKQIERLEERIEKLE 356
>gnl|CDD|234375 TIGR03860, FMN_nitrolo, FMN-dependent oxidoreductase,
nitrilotriacetate monooxygenase family. This model
represents a distinctive clade, in which all
characterized members are FMN-binding, within the larger
family of luciferase-like monooxygenases (LLM), among
which there are both FMN- and F420-binding enzymes. A
well-characterized member is nitrilotriacetate
monooxygenase from Aminobacter aminovorans
(Chelatobacter heintzii), where nitrilotriacetate is a
chelating agent used in detergents [Unknown function,
Enzymes of unknown specificity].
Length = 422
Score = 30.9 bits (71), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 172 VGTPEYVAPEVLEWMEGNHGSDGY 195
VGTPE VA ++ EW E +DG+
Sbjct: 360 VGTPEQVADQLEEWFE-EGAADGF 382
>gnl|CDD|182809 PRK10884, PRK10884, SH3 domain-containing protein; Provisional.
Length = 206
Score = 30.4 bits (69), Expect = 2.9
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 21/82 (25%)
Query: 476 ELEEQ-KTATKQ-------WKK---DWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
+LE Q KT T + W + + Q V + ++ + LK+ EN+ LK +L
Sbjct: 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKE---ENQKLKNQLI---- 149
Query: 525 ELKVSEEALATAQNSLDSKLRE 546
V+++ + A LD K R
Sbjct: 150 ---VAQKKVDAANLQLDDKQRT 168
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 30.1 bits (68), Expect = 2.9
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 496 KERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSK 543
KE + + Q NE L+++L L Q L EE T + +D
Sbjct: 104 KENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRA 151
>gnl|CDD|233812 TIGR02290, M3_fam_3, oligoendopeptidase, pepF/M3 family. The M3
family of metallopeptidases contains several distinct
clades. Oligoendopeptidase F as characterized in
Lactococcus, the functionally equivalent
oligoendopeptidase B of group B Streptococcus, and
closely related sequences are described by TIGR00181.
The present family is quite similar but forms a distinct
clade, and a number of species have one member of each.
A greater sequence difference separates members of
TIGR02289, probable oligoendopeptidases of the M3 family
that probably should not be designated PepF.
Length = 587
Score = 30.8 bits (70), Expect = 3.1
Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 27/217 (12%)
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
E ++L+ ++ +E ++ ++ +L+ A EAL E L+ +
Sbjct: 15 EFEEDLKKIKALADEFESLYQEKLTP------LDAKGKEKLQNALKRYEALGELLSKVG- 67
Query: 525 ELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRV-REMSGISEKYEKDRK 583
A A+ S D+ E +AL +E++ E++Q+ + E+ +S++
Sbjct: 68 -------AYASLLYSADTSDPEAKALLGELEALSSEIQQALLFFTLELMRLSDEVWAALL 120
Query: 584 TLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKL-----EKAEGELTT 638
+ +L + L+ E+R S E N A S+L +
Sbjct: 121 SDPDLAPYRFYLK-ELRKEAPHTLSEEEEKLINALSLTGRAAWSRLYDELTGTLRIPVDG 179
Query: 639 VREENKKLKQGKIR-LVYSLFKDP---QPAQSKLEKA 671
E + L + L+ D + A L KA
Sbjct: 180 KDGEEETLSLEQALNLLRD--PDAEVRKKAFKALLKA 214
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 31.0 bits (71), Expect = 3.1
Identities = 30/122 (24%), Positives = 51/122 (41%), Gaps = 19/122 (15%)
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
++L L LEE + +Q K A A LK+A+ E L+EK L++E
Sbjct: 515 KEKLNELIASLEELERELEQ---------KAEEAE-ALLKEAEKLKEELEEKKEKLQEEE 564
Query: 527 KVS--------EEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKY 578
++A+ A+ D ++E + L + K E R + ++ +EK
Sbjct: 565 DKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGGYASVKAHELIEAR-KRLNKANEKK 623
Query: 579 EK 580
EK
Sbjct: 624 EK 625
>gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt).
This entry represents 77 residues of an 80 amino acid
(240 nucleotide) tandem repeat, found in a variable
number of copies in an immunodominant outer membrane
protein of Ehrlichia chaffeensis, a tick-borne obligate
intracellular pathogen.
Length = 707
Score = 30.8 bits (68), Expect = 3.1
Identities = 42/260 (16%), Positives = 93/260 (35%), Gaps = 8/260 (3%)
Query: 386 ALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRS 445
A+ + ++ S K+E + +++ D VA V +
Sbjct: 190 AVDGSIEHSSSEVGEEVSKTEKEESNPEVKAEDLQPAVDDDVAHHESEVGDKPAETSKEE 249
Query: 446 ELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAEL 505
E E + + V S E+E +GE E+++ + +D +V + +
Sbjct: 250 ETPEVKAEDLQPAVDGSVEHSSSEIEEHQGETEKEEGIPESHAEDLQPAVDD------IV 303
Query: 506 KQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSA 565
+ +E +E+++ E+E E Q++ D + + +E + E+E+
Sbjct: 304 EHPSSEPFVAEEEVSETEKEENNPEVLAEDLQDAADGESGVSDQPAQVVEERESEIEEHQ 363
Query: 566 VRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQTIELR- 624
+ GI E + +D + + E+ + + E + E++ Q
Sbjct: 364 GETEKEEGIPESHAEDDEIASDPSIEHFSAEVGKEVSETEKEESNPEVKAEDLQPAVDGD 423
Query: 625 -AKSKLEKAEGELTTVREEN 643
A + E + T +EE
Sbjct: 424 VAHHESEVGDKPAETSKEEE 443
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 30.6 bits (69), Expect = 3.2
Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 12/150 (8%)
Query: 347 PPSSEDMRHWKRDRLQLLQQLAEAKASLEDLSCSRTRVL-------ALQAQVSSLQQDLT 399
P + E H R Q ++ E KA L L +R R++ L A+ + +++ T
Sbjct: 278 PLTDEFKEHHAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRT 337
Query: 400 SHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDR 459
+ K E + + ++ ++ + R+ + +K
Sbjct: 338 A-----EKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLID 392
Query: 460 KLEVCEVSKELEVLRGELEEQKTATKQWKK 489
+ E E +G + + T
Sbjct: 393 ASPNEDTPSENEESKGSPPQVEATTTAEPN 422
>gnl|CDD|221489 pfam12252, SidE, Dot/Icm substrate protein. This family of proteins
is found in bacteria. Proteins in this family are
typically between 397 and 1543 amino acids in length.
This family is the SidE protein in the Dot/Icm pathway of
Legionella pneumophila bacteria. There is little
literature describing the family.
Length = 1443
Score = 31.0 bits (70), Expect = 3.3
Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 25/205 (12%)
Query: 384 VLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEV 443
+ L+ Q+ + L + L + ++I L +E K +S+L + + T ++E +
Sbjct: 1166 IEKLEKQLQVIDTKL--ADAYLLEVTKQISALEKEKPKNQSELKSKIAKFFDTTADIEVL 1223
Query: 444 RSE-LKE----KENLEKTDDRKLE-------VCEVSKELEVLRGELEEQKTATKQWKKDW 491
R+E +K+ K+ L+ +D KL VS + +R L + K T + ++
Sbjct: 1224 RNERIKKHGSSKDPLDLSDLDKLSGNLQGVNQSLVSILITTIRSSLNQMKPKTFEMQEKE 1283
Query: 492 YQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEA------LATAQNSLDSKLR 545
Q E A + + E L+E + L+ L ++A L +L ++LR
Sbjct: 1284 IQQNFELLAKLEKTLDKSDTAEKLREDIPKLKDLLIAKQKAYPEMVQLQYKSEALITQLR 1343
Query: 546 E-----HQALSNTIESMQKEMEQSA 565
E H L+ T + +E+++
Sbjct: 1344 ELCQAHHDDLAKTRTARLQELDRQD 1368
>gnl|CDD|182319 PRK10226, PRK10226, isoaspartyl peptidase; Provisional.
Length = 313
Score = 30.7 bits (69), Expect = 3.3
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 14/64 (21%)
Query: 532 ALATAQNSLDSKLREHQALSNTIESMQKEME---------QSAVRVREM-----SGISEK 577
A++ AQ SL +LR +ALS +E+ QK +E AVR+ E +GI
Sbjct: 14 AISRAQMSLQQELRYIEALSAIVETGQKMLEAGESALDVVTEAVRLLEECPLFNAGIGAV 73
Query: 578 YEKD 581
+ +D
Sbjct: 74 FTRD 77
>gnl|CDD|223584 COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme
transport and metabolism].
Length = 269
Score = 30.4 bits (69), Expect = 3.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 132 VHRDIKPDNMLLSATGHLKLTDF 154
H D+ P N+LL+ G L L D+
Sbjct: 156 CHNDLNPGNLLLTDKGGLFLIDW 178
>gnl|CDD|79176 PRK12718, flgL, flagellar hook-associated protein FlgL;
Provisional.
Length = 510
Score = 30.5 bits (68), Expect = 3.7
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 17/97 (17%)
Query: 515 LKEKLTSLEQELKVSEEALATA-------QNSLDS-----KLREHQAL---SNTIESMQK 559
L+E+L+S + L +++ LA A +S++S + + QAL +NT++S+ K
Sbjct: 26 LQEQLSSGRRVLTPADDPLAAALAVNVSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVK 85
Query: 560 EMEQSAVRVREMSGISEKYEKDRKTL-LELKSAKERL 595
M++ RV E +G + DR+ L + LK A+E L
Sbjct: 86 NMQEMLKRVVE-AGNGTMSDADRQALVIALKGAREEL 121
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 29.5 bits (67), Expect = 3.8
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 492 YQSVKERNAAVAELKQAQTENE-----ALKEKLTSLEQELKVSEEALATAQNSLDSKLRE 546
+ +N AV LKQA+ ++ A K E + E A + L +K+
Sbjct: 21 LKGGNAKNEAV--LKQAEASDQWAFYQAKSIKQHLAELAADLLELEAAAPRAELQAKIAR 78
Query: 547 HQALSNTIESMQKEMEQSA 565
++ S KE+E A
Sbjct: 79 YKKEKARYRSEAKELEAKA 97
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 30.7 bits (70), Expect = 3.8
Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 4/104 (3%)
Query: 498 RNAAVAELKQAQTENEALKEKLTSLEQELKVS---EEALATAQNSLDSKLREHQALSNTI 554
+NA A L+ + AL+ +L +LE+E + +E LA + L + E AL
Sbjct: 414 QNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARW 473
Query: 555 ESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELE 598
+ +KE+ ++ + +R D L + A+ L
Sbjct: 474 Q-QEKELVEAILALRAELEADADAPADDDAALRAQLAELEAALA 516
Score = 30.3 bits (69), Expect = 5.1
Identities = 32/113 (28%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 342 SDSTLPPSSEDMRHWKRDRLQL-LQQL-AEAKASLED---LSCSRTRVLALQAQVSSLQQ 396
S + P + ED+R + L+L L L EA + L+ R + AL+A++++L+
Sbjct: 413 SQNATPAALEDLRR-RIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEA 471
Query: 397 DLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKE 449
L+ E I LR E+ E+D A + D A R +L E+ + L
Sbjct: 472 RWQQEKELV----EAILALRAEL---EADADAPADDDAALRAQLAELEAALAS 517
>gnl|CDD|213830 TIGR03576, pyridox_MJ0158, pyridoxal phosphate enzyme, MJ0158
family. Members of this archaeal protein family are
pyridoxal phosphate enzymes of unknown function.
Sequence similarity to SelA, a bacterial enzyme of
selenocysteine biosynthesis, has led to some members
being misannotated as functionally equivalent, but
selenocysteine is made on tRNA in Archaea by a two-step
process that does not involve a SelA homolog [Unknown
function, Enzymes of unknown specificity].
Length = 346
Score = 30.5 bits (69), Expect = 3.9
Identities = 30/111 (27%), Positives = 44/111 (39%), Gaps = 17/111 (15%)
Query: 368 AEAKASLEDLSCSRTRVLALQAQVSSLQQDL--TS--------HTSLLSKKEEEIDRLRQ 417
EA ++D S +R R L Q L DL TS LL+ ++E +D+++
Sbjct: 167 KEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPRGGLLAGRKELVDKIKS 226
Query: 418 EMVKKESDLVATSSDLVAT-----RHELEEVRSELKEKENLEKTDDRKLEV 463
+ L A + L A EL +R K KE + KL V
Sbjct: 227 VGEQ--FGLEAQAPLLAAVVRALEEFELSRIRDAFKRKEEVYLRLFDKLNV 275
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 30.6 bits (69), Expect = 4.0
Identities = 19/75 (25%), Positives = 31/75 (41%)
Query: 408 KEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVS 467
+EE+ D LR E+ +L A L+ L ++ + DD +L EV
Sbjct: 146 REEDADDLRDELAADLEELDAERDRLIEATRRLSVDYVPEDDEFVDDIGDDERLTAEEVR 205
Query: 468 KELEVLRGELEEQKT 482
E+ + E E+K
Sbjct: 206 AEVADIYEEYNERKA 220
>gnl|CDD|217135 pfam02601, Exonuc_VII_L, Exonuclease VII, large subunit. This
family consist of exonuclease VII, large subunit
EC:3.1.11.6 This enzyme catalyzes exonucleolytic
cleavage in either 5'->3' or 3'->5' direction to yield
5'-phosphomononucleotides. This exonuclease VII enzyme
is composed of one large subunit and 4 small ones.
Length = 295
Score = 30.4 bits (69), Expect = 4.1
Identities = 23/141 (16%), Positives = 54/141 (38%), Gaps = 14/141 (9%)
Query: 474 RGELEEQ-KTATKQWKKDWYQSVKERNAAVAELK-----QAQTENEALKEKLTSLEQELK 527
R EL ++ + ++ + +++ + L+ ++ E +E+L L L
Sbjct: 145 RTELLQKLEGLEQRLSRALKNRLEKEQDRLNLLRERLKSLSRRLLEQHEERLAELRDRLI 204
Query: 528 VS-EEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMS-------GISEKYE 579
S + L+ Q+ L+ + + N++ + +++ +S G +
Sbjct: 205 SSIQNLLSRKQSRLERLILNRELEKNSLLENKLATANLTAQLKALSPLKTLKRGFAIVRR 264
Query: 580 KDRKTLLELKSAKERLELEVR 600
KD K + K LE+R
Sbjct: 265 KDGKIVTSAAELKPGDNLEIR 285
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 30.6 bits (69), Expect = 4.2
Identities = 49/258 (18%), Positives = 88/258 (34%), Gaps = 37/258 (14%)
Query: 407 KKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEV 466
K+ +L + + + L S+L A R + +R ++ L
Sbjct: 202 KEYATYHKLLESRRAEHARLAELRSELRADRDHIRALRDAVELWPRL------------- 248
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
+E + L EL ++ + +D V A L++ + E +AL +L L+
Sbjct: 249 -QEWKQLEQELTRRREELATFPRD---GVLRLEKREAHLQKTEAEIDALLVRLAELKDLA 304
Query: 527 KVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKY----EKDR 582
A + L + +R HQ LS S + E A ++ E E +R
Sbjct: 305 SQLIPA---KEAVLQALVRLHQQLSEIKASAFELTETLAGIEADLRDKEEAAGNGFEAER 361
Query: 583 KTLLELKSAKERLELEVRGYKLDLEST------RRELETNKDQTIELRAKSKLEKAEGEL 636
L L + + +L+ T R + + + E A+ +L E E+
Sbjct: 362 VHDLRSLEC----MLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEV 417
Query: 637 ---TTVREENKKLKQGKI 651
REE I
Sbjct: 418 RAGDEAREEKIAANSQVI 435
Score = 30.2 bits (68), Expect = 5.5
Identities = 51/249 (20%), Positives = 96/249 (38%), Gaps = 18/249 (7%)
Query: 366 QLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESD 425
Q + ++++DL + L QV+ L+++ + + ++ S
Sbjct: 611 QQLDILSTMKDLKKLMQKKAELTHQVARLREEQAAFEERVEGLLAVLEA----QFIDLST 666
Query: 426 LVATSSDLVATRHELEEVRSELKEKENL--EKTDDRKLEVCEVSKELEVL-----RGELE 478
L VA + EE R L+ E D+ + E+ KE+ L +
Sbjct: 667 LFCVQRLRVAAELQKEEARLALEGNIERTKELNDELRAELELHRKEILDLFDCGTADTED 726
Query: 479 EQKTATKQWKKDWYQSVKER-NAAVAELKQAQTENEALKEKLTSL---EQELKVSEEALA 534
+ A ++ ++ + R + A+L+ E L L E+EL + EEA+
Sbjct: 727 AFREAAREEQQ--LTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAID 784
Query: 535 TAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKER 594
++ + ALS I ++ + +R R S + EK RK L+ A +
Sbjct: 785 ALDEEVEELHAQVAALSRQIAQLEGGGTVAELRQRRESLKEDLEEKARK-WASLRLAVQV 843
Query: 595 LELEVRGYK 603
LE +R +K
Sbjct: 844 LEEALRLFK 852
>gnl|CDD|240168 cd05145, RIO1_like, RIO kinase family; RIO1, RIO3 and similar
proteins, catalytic domain. The RIO kinase catalytic
domain family is part of a larger superfamily, that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and phosphoinositide 3-kinase (PI3K). RIO
kinases are atypical protein serine kinases containing a
kinase catalytic signature, but otherwise show very
little sequence similarity to typical PKs. Serine
kinases catalyze the transfer of the gamma-phosphoryl
group from ATP to serine residues in protein substrates.
The RIO catalytic domain is truncated compared to the
catalytic domains of typical PKs, with deletions of the
loops responsible for substrate binding. RIO1 is present
in archaea, bacteria and eukaryotes. In addition, RIO3
is present in multicellular eukaryotes. RIO1 is
essential for survival and is required for 18S rRNA
processing, proper cell cycle progression and chromosome
maintenance. The biological substrates for RIO1 are
unknown. The function of RIO3 is also unknown.
Length = 190
Score = 29.8 bits (68), Expect = 4.4
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Query: 80 MNHVYFIMEYV-TGGDFVTLLENQPHGYLSESKAR-FYIYELAQAVQYLHGLGYVHRDIK 137
+V +ME++ G L++ P L E +A Y + Q + G VH D+
Sbjct: 90 KKNV-LVMEFIGDDGSPAPRLKDVP---LEEEEAEELYEQVVEQMRRLYQEAGLVHGDLS 145
Query: 138 PDNMLLSATGHLKLTDFGSATQVD 161
N+L G + D A ++D
Sbjct: 146 EYNILYHD-GKPYIIDVSQAVELD 168
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 30.4 bits (68), Expect = 4.7
Identities = 28/164 (17%), Positives = 68/164 (41%), Gaps = 28/164 (17%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHE-----LEEVRSELKEKENLEKTDDR 459
L ++E + D R + +K+E D +D + + ++ R E+++K+ K +
Sbjct: 203 LKERESQEDAKRAQQLKEELDKKQIDADKAQQKADFAQDNADKQRDEVRQKQQEAKNLPK 262
Query: 460 KLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKL 519
+ ++ +V + E + A + KK+ +++K ++ +LKQ +E E
Sbjct: 263 PADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAE-- 320
Query: 520 TSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQ 563
L+++ ++ + ++ E +QK Q
Sbjct: 321 -----------------DKELEAQ-KKREPVA---EDLQKTKPQ 343
>gnl|CDD|144876 pfam01442, Apolipoprotein, Apolipoprotein A1/A4/E domain. These
proteins contain several 22 residue repeats which form a
pair of alpha helices. This family includes:
Apolipoprotein A-I. Apolipoprotein A-IV. Apolipoprotein
E.
Length = 191
Score = 29.5 bits (67), Expect = 5.0
Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAEL-----KQAQTENEALKEKL 519
E+ K+LE +R L+ + K Q+++E +A K+ + E L+ KL
Sbjct: 42 ELQKDLEDVRARLQPY---LDELKAKVGQNLEELRQRLAPYAEELRKRLNRDAEELRRKL 98
Query: 520 TSLEQEL--KVSEEALAT----------AQNSLDSKLRE-HQALSNTIESMQKEMEQSAV 566
+EL ++ + A + L +L E +++ E + ++ +
Sbjct: 99 APYAEELRDRLRQNVEALRARLGPYVEELRQKLAERLEELKESVGPYAEEYKAQLSEQVE 158
Query: 567 RVRE 570
+RE
Sbjct: 159 ELRE 162
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 30.4 bits (69), Expect = 5.0
Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 1/145 (0%)
Query: 408 KEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKL-EVCEV 466
++E + ++ K E S + E E ++ K +K E E+
Sbjct: 431 EKEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEEL 490
Query: 467 SKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQEL 526
+E L+ K+A KQ K S ++ A + + + KEK L+ +L
Sbjct: 491 DEENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDL 550
Query: 527 KVSEEALATAQNSLDSKLREHQALS 551
E+++ + + + E
Sbjct: 551 IDEEDSIKLDVDDEEDEDDEELPFL 575
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 30.2 bits (68), Expect = 5.0
Identities = 30/164 (18%), Positives = 55/164 (33%), Gaps = 20/164 (12%)
Query: 482 TATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLD 541
+Q+ + Q + A K+ Q + E L++K + ++ LK E+ AQ
Sbjct: 59 AVVEQYNRQQQQQKSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQ---- 114
Query: 542 SKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRG 601
+K+ E++A + +E+ + K+ E
Sbjct: 115 --------------EQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAA 160
Query: 602 YKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKK 645
K E+ ++ + AK K E AE E KK
Sbjct: 161 KKAAAEAKKKAEAEAAKKA-AAEAKKKAE-AEAAAKAAAEAKKK 202
>gnl|CDD|236942 PRK11637, PRK11637, AmiB activator; Provisional.
Length = 428
Score = 30.0 bits (68), Expect = 5.0
Identities = 48/236 (20%), Positives = 100/236 (42%), Gaps = 37/236 (15%)
Query: 485 KQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKL 544
+ K Q + + +V +Q Q + +L +L E+ + + L QN+L+
Sbjct: 46 RDQLKSIQQDIAAKEKSV---RQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLN 102
Query: 545 REHQALSNTIESMQKEMEQ----------SAVRVREMSGI--------SEKYEKDRKTLL 586
++ L+ +I ++++ +A R E +G+ S++ E+
Sbjct: 103 KQIDELNASIAKLEQQQAAQERLLAAQLDAAFRQGEHTGLQLILSGEESQRGERILAYFG 162
Query: 587 ELKSAKERLELEVRGYKLDLESTRRELETNKDQTIEL-----RAKSKLEKAEGE----LT 637
L A++ E++ + +L + + ELE + Q L + KLE+A E LT
Sbjct: 163 YLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLT 222
Query: 638 TVREENKK-------LKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLK 686
+ +K L+ + RL S+ + + A+++ E+ E VR++ K+ K
Sbjct: 223 GLESSLQKDQQQLSELRANESRLRDSIARAEREAKARAEREAREAARVRDKQKQAK 278
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 29.7 bits (67), Expect = 5.1
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 9/127 (7%)
Query: 405 LSKKEEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVC 464
LSK +E+ + E KE + + L R E EE R L+E + +++
Sbjct: 56 LSKMQEKTRQAELEAKIKEYEAQQAQAKLERARVEAEERRKTLQE----QTQQEQQRAQY 111
Query: 465 EVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQ 524
+ + + ELE+Q+ ++ K +SV + E + TE E L+ + ++E+
Sbjct: 112 QDELARKRYQKELEQQRRQNEELLKMQEESVLRQ-----EAMRRATEEEILEMRRETIEE 166
Query: 525 ELKVSEE 531
E ++ E
Sbjct: 167 EAELERE 173
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 30.4 bits (69), Expect = 5.1
Identities = 37/243 (15%), Positives = 86/243 (35%), Gaps = 37/243 (15%)
Query: 409 EEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSK 468
E I+ + E +++ LEE+ +L+E + + ++E ++
Sbjct: 489 EPIIEEAKTEFGEEKE--------------LLEELIEKLEEVRKELEEELEEVE--KLLD 532
Query: 469 ELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELKV 528
E+E+L G KT+ + K Q V A + EA E + ++ LK
Sbjct: 533 EVELLTGANSGGKTSLLELKA---QIVVL-----AHMGLPVPAEEAKVEAVDEVK-FLKK 583
Query: 529 SEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLEL 588
+ L + +S L++ + + +K + V ++G ++++
Sbjct: 584 KKGILDA--GAFESTLKDKKNKV--LPEAKKRKLKLGDEVEVITGEPGA-------VVKI 632
Query: 589 KSAKERLELEVRGYKLDLESTRREL-ETNKDQTIELRAKSKLEKAEGELTTVREENKKLK 647
+ ++ K+ + E+ + ++ L+ +L R E +
Sbjct: 633 IAGILEALVQSGILKVIVSHLDLEIIKEEPKVKVKGIEAPGLDSNRLDLRGERSEEALDE 692
Query: 648 QGK 650
K
Sbjct: 693 LDK 695
>gnl|CDD|236795 PRK10920, PRK10920, putative uroporphyrinogen III
C-methyltransferase; Provisional.
Length = 390
Score = 30.1 bits (68), Expect = 5.2
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 506 KQAQ---TENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEME 562
+QAQ N+AL +LT+L++ A + + L+ L++ + Q +
Sbjct: 60 QQAQNQTATNDALANQLTALQK-------AQESQKQELEGILKQQAKALDQANRQQAALA 112
Query: 563 QSAVRVRE-MSGIS 575
+ +++ ++ IS
Sbjct: 113 KQLDELQQKVATIS 126
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase.
Length = 639
Score = 30.2 bits (68), Expect = 5.2
Identities = 46/232 (19%), Positives = 92/232 (39%), Gaps = 34/232 (14%)
Query: 321 ALPLIGISYTGEPMGANTNTSSDSTLPPSSEDMRHWKRDRLQ-----------------L 363
LP S EP+G + +S T+ P S+D+ KR + +
Sbjct: 58 VLPQESSSSLKEPIGIVYSDNSSKTIEPDSQDLLLDKRGEHKARVLSATDDDTHSQTDDI 117
Query: 364 LQQLAEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKE 423
++Q+ + +D S + + Q+ + + ++ S+K +E + L + K+
Sbjct: 118 IKQVTQKAG--QDDSDQQEKNSQSQSASQAESLEHVQQSAQTSEKVDEKEPLLTKTDKQT 175
Query: 424 SDLVATSSDLVATRHELEEVRSEL---KEKENLEKTDDRKLEVCEVSKELEVLRGELEEQ 480
V + + R +L + + L K N T + +L + EV + L + +
Sbjct: 176 DQTVMPDARVRQLRDQLIKAKVYLSLPATKANPHFTRELRLRIKEVQRVLGDASKDSDLP 235
Query: 481 KTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLT----SLEQELKV 528
K A + +K +A+ KQ Q + + +KL S E++L+V
Sbjct: 236 KNA--------NEKLKAMEQTLAKGKQMQDDCSIVVKKLRAMLHSAEEQLRV 279
>gnl|CDD|130658 TIGR01597, PYST-B, Plasmodium yoelii subtelomeric family PYST-B.
This model represents a paralogous family of Plasmodium
yoelii genes preferentially located in the subtelomeric
regions of the chromosomes. There are no obvious
homologs to these genes in any other organism.
Length = 255
Score = 29.9 bits (67), Expect = 5.2
Identities = 31/114 (27%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 577 KYEKDRKTLLELKSAKERLELEVRGYKLDLESTRREL--ETNKDQTIE-LRAKSKLEKAE 633
K K+R TL +L + ++ + + + +LE ++EL E N + TI+ + K ++K E
Sbjct: 93 KKHKERNTLPDLNNVDKKTKKLINKLQKELEELKKELDNEMNDELTIQPIHDKIIIKKDE 152
Query: 634 GELTTVREENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKLKV 687
+ E+ K+L+ K V S ++ A S K + +L + KKL V
Sbjct: 153 NNSVSEHEDFKQLENEKNSSV-SEHEEFDIASSDNLKIKRKLK---KLVKKLIV 202
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 28.4 bits (64), Expect = 5.3
Identities = 32/104 (30%), Positives = 51/104 (49%), Gaps = 15/104 (14%)
Query: 386 ALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLVATSSDL------VATRHE 439
L + LQQ L + + E ++ + E+V +E +L+ + + V + +
Sbjct: 2 ELINKFQQLQQQLQLLAQQIKQLETQLKEI--ELVLEELELLDEDTKVYKLIGDVLVKQD 59
Query: 440 LEEVRSELKE-KENLEKTDDRKLEVCEVSKELEVLRGELEEQKT 482
EEV+ EL+E KE LEK E+ + K+LE L ELEE K
Sbjct: 60 KEEVKEELEERKETLEK------EIKTLEKQLEKLEKELEELKE 97
>gnl|CDD|224482 COG1566, EmrA, Multidrug resistance efflux pump [Defense
mechanisms].
Length = 352
Score = 30.0 bits (68), Expect = 5.3
Identities = 32/151 (21%), Positives = 58/151 (38%), Gaps = 33/151 (21%)
Query: 532 ALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSA 591
AL A+ +L + + + L + S Q + Q+ + L + ++
Sbjct: 92 ALEQAEAALAAAEAQLRNLRAQLASAQALIAQAEA----------------QDLDQAQNE 135
Query: 592 KERL-ELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLKQGK 650
ER EL RG +R EL+ RA++ L+ AE L + K+
Sbjct: 136 LERRAELAQRGV-----VSREELD---------RARAALQAAEAALAAAQAAQKQNLALL 181
Query: 651 IRLVYSLFKDPQPAQSKLEKAEGEL--TTVR 679
V A++ L++A+ +L T +R
Sbjct: 182 ESEVSGAQAQVASAEAALDQAKLDLERTVIR 212
>gnl|CDD|163506 TIGR03794, NHLM_micro_HlyD, NHLM bacteriocin system secretion
protein. Members of this protein family are homologs of
the HlyD membrane fusion protein of type I secretion
systems. Their occurrence in prokaryotic genomes is
associated with the occurrence of a novel class of
microcin (small bacteriocins) with a leader peptide
region related to nitrile hydratase. We designate the
class of bacteriocin as Nitrile Hydratase Leader
Microcin, or NHLM. This family, therefore, is designated
as NHLM bacteriocin system secretion protein. Some but
not all NHLM-class putative microcins belong to the TOMM
(thiazole/oxazole modified microcin) class as assessed
by the presence of the scaffolding protein and/or
cyclodehydratase in the same gene clusters [Transport
and binding proteins, Amino acids, peptides and amines,
Cellular processes, Biosynthesis of natural products].
Length = 421
Score = 30.2 bits (68), Expect = 5.3
Identities = 43/209 (20%), Positives = 71/209 (33%), Gaps = 28/209 (13%)
Query: 444 RSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVA 503
R K KE LE+T + + +EL L E+ +Q+ + + +
Sbjct: 128 RHFQKSKEALEET------IGRLREELAALSREVGKQRGLLSR------GLATFKRDRIL 175
Query: 504 ELKQAQTENEALKEKLTS-LEQEL--KVSEEALATAQNSLDSKLREHQALSNTIESMQKE 560
+Q + E E + L K E L T SL QA +KE
Sbjct: 176 -QQQWREEQEKYDAADKARAIYALQTKADERNLETVLQSLS------QADFQLAGVAEKE 228
Query: 561 MEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELEVRGYKLDLESTRRELETNKDQT 620
+E R++E E+ E + S +E+ L + L +
Sbjct: 229 LETVEARIKEARYEIEELENKLNLNTRIVSQHSGRVIELNYTPGQLVAAGAPL-----AS 283
Query: 621 IELRAKSKLEKAEGELTTVREENKKLKQG 649
+E+ + E EG E KK++ G
Sbjct: 284 LEVEDQ-TDEGLEGVAYFPVAEGKKIRPG 311
>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G. This
model describes the vacuolar ATP synthase G subunit in
eukaryotes and includes members from diverse groups
e.g., fungi, plants, parasites etc. V-ATPases are
multi-subunit enzymes composed of two functional
domains: A transmembrane Vo domain and a peripheral
catalytic domain V1. The G subunit is one of the
subunits of the catalytic domain. V-ATPases are
responsible for the acidification of endosomes and
lysosomes, which are part of the central vacuolar system
[Energy metabolism, ATP-proton motive force
interconversion].
Length = 113
Score = 28.6 bits (64), Expect = 5.3
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
Query: 575 SEKYEKDRKTLLE-LKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAE 633
+EK + RK + LK AKE + EV YK E +E E + + +
Sbjct: 19 AEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNGAAEEKAEAETQ 78
Query: 634 GELTTVREENKKLKQGKIRLVYSLFKDPQP 663
++ +++ +K K I+ + L D P
Sbjct: 79 AKIREIKKAVQKNKDAVIKDLLHLVCDISP 108
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 30.1 bits (68), Expect = 5.3
Identities = 27/106 (25%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 441 EEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKER-N 499
+EV +KE E D K E ++ + E L + E+Q K+ K + KE+
Sbjct: 505 DEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQ---LKELKDKISEEKKEKIE 561
Query: 500 AAVAELKQA-QTEN-EALKEKLTSLEQELKVSEEALATAQNSLDSK 543
+ +L+QA Q +N E++K L L++ L + + ++ ++ D
Sbjct: 562 NLIKKLRQALQNDNYESIKSLLEELQKALMEIGKEVYSSTSTTDPA 607
>gnl|CDD|184447 PRK14003, PRK14003, potassium-transporting ATPase subunit C;
Provisional.
Length = 194
Score = 29.3 bits (66), Expect = 5.6
Identities = 11/31 (35%), Positives = 21/31 (67%)
Query: 400 SHTSLLSKKEEEIDRLRQEMVKKESDLVATS 430
S+ +L+ + +EE +RL+ ++ +DLV TS
Sbjct: 98 SNPALIERIKEEANRLQDAGIQPTADLVYTS 128
>gnl|CDD|182791 PRK10865, PRK10865, protein disaggregation chaperone; Provisional.
Length = 857
Score = 30.2 bits (68), Expect = 5.6
Identities = 42/168 (25%), Positives = 71/168 (42%), Gaps = 33/168 (19%)
Query: 392 SSLQQDLTSHTSLLSKKEEEIDRLR--QEMVKKESD------LVATSSDLVATRHELEEV 443
SS++ + S L + + I +L+ Q+ + KESD L + +L + E+
Sbjct: 399 SSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSEL 458
Query: 444 RSELK-EKENLEKTDDRKLEVCEVSKELEVLR----------------GELEEQKTATKQ 486
E K EK +L T K E+ + +E R ELE+Q A Q
Sbjct: 459 EEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQ 518
Query: 487 WKKDWYQSVKER--NAAVAELKQAQT------ENEALKEKLTSLEQEL 526
+ + ++ + +A +AE+ T E+ +EKL +EQEL
Sbjct: 519 LEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQEL 566
>gnl|CDD|119001 pfam10481, Cenp-F_N, Cenp-F N-terminal domain. Mitosin or
centromere-associated protein-F (Cenp-F) is found bound
across the centromere as one of the proteins of the
outer layer of the kinetochore. Most of the
kinetochore/centromere functions appear to depend upon
binding of the C-terminal par to f the molecule, whereas
the N-terminal part, here, may be a cytoplasmic player
in controlling the function of microtubules and dynein.
Length = 288
Score = 29.8 bits (66), Expect = 5.9
Identities = 35/163 (21%), Positives = 74/163 (45%), Gaps = 11/163 (6%)
Query: 409 EEEIDRLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCE--- 465
E ++D+L++E +++ L + + A + + ++V +E E NL++ + R +E+CE
Sbjct: 24 EGQLDKLKKEKQQRQFQLDSLEA---ALQKQKQKVENEKTEGANLKRENQRLMEICEHLE 80
Query: 466 -----VSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLT 520
+S EL+V ++ Q+ KK + +E +EL+++Q ++ L
Sbjct: 81 KTKQKISHELQVKESQVNFQEGQLNSCKKQIEKLEQELKRCKSELERSQQAAQSADVSLN 140
Query: 521 SLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQ 563
K+ L +Q SK + + N +K +E
Sbjct: 141 PCSTPQKIFATPLTPSQYYSGSKYEDLKEKYNKEVEERKRLEA 183
>gnl|CDD|217869 pfam04065, Not3, Not1 N-terminal domain, CCR4-Not complex
component.
Length = 233
Score = 29.6 bits (67), Expect = 6.2
Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 15/111 (13%)
Query: 517 EKLTSLEQELKV---SEEALATAQNSLDSKLREHQA----LSNTIESMQKEMEQSAVRVR 569
E+ ++E+E+K S+E L +A + LD K +E LSNTI+ + K++E V
Sbjct: 88 ERFKAVEKEMKTKAFSKEGL-SAASKLDPKEKEKAEVCDFLSNTIDELNKQIELLEAEVE 146
Query: 570 EMSGISEKYEKDR---KTLLELKSAKERLELEVRGYKLDLESTRRELETNK 617
+S +K + D + + EL+ ER + + LE R LE +
Sbjct: 147 SLSVQRKKRKADAAKQERIAELEELLERHKFHIS----KLELILRLLENGE 193
>gnl|CDD|145900 pfam02994, Transposase_22, L1 transposable element.
Length = 370
Score = 29.6 bits (66), Expect = 6.4
Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 5/114 (4%)
Query: 537 QNSLDSKLREH-QALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERL 595
+ S LRE + +++ KE+E+ + E E EK K L+ELK L
Sbjct: 53 KKDNYSSLREDIETKGKEVQNFLKELEECITKQVEA--HIENTEKCLKELMELKKKAREL 110
Query: 596 ELEVRGYKLDLESTRRELETNKDQ--TIELRAKSKLEKAEGELTTVREENKKLK 647
+ E R K + T ++E K + ++ +++++ E ++ + +++K
Sbjct: 111 KEECRSIKKEHMETTLDIENQKKRQGVVDTSFTNRIQEMEERISGAEDSIEEIK 164
>gnl|CDD|182106 PRK09841, PRK09841, cryptic autophosphorylating protein tyrosine
kinase Etk; Provisional.
Length = 726
Score = 29.9 bits (67), Expect = 6.5
Identities = 42/159 (26%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 415 LRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLR 474
L+Q + ++ + S L + +L EVRSEL + E EK + + + V LE +
Sbjct: 254 LQQNIARQAAQ---DSQSLEFLQRQLPEVRSELDQAE--EKLNVYRQQRDSVDLNLEA-K 307
Query: 475 GELEEQKTATKQWKKDWYQSVKERNAAVAEL-KQAQTENEALKEKLTSLEQELKVSEEAL 533
LE+ Q + + R A +++L K+ AL EK +LEQE K + +
Sbjct: 308 AVLEQIVNVDNQLNE-----LTFREAEISQLYKKDHPTYRALLEKRQTLEQERKRLNKRV 362
Query: 534 ATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMS 572
+ ++ LR LS +E+ + Q R +E+S
Sbjct: 363 SAMPSTQQEVLR----LSRDVEAGRAVYLQLLNRQQELS 397
>gnl|CDD|219737 pfam08172, CASP_C, CASP C terminal. This domain is the C-terminal
region of the CASP family of proteins. It is a Golgi
membrane protein which is thought to have a role in
vesicle transport.
Length = 245
Score = 29.3 bits (66), Expect = 7.2
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 14/131 (10%)
Query: 512 NEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALS-NTIESMQKEM-EQSAVRVR 569
E L+++L+SL +L+ +E A +N L + E N SM + R
Sbjct: 1 LEELQKELSSLNAKLEEQQELNAKLENDLATVQDEISNRRFNDNASMISGGTRRIPNRGG 60
Query: 570 E-----MSGISEKYEKDRKTLLELKSAKER-------LELEVRGYKLDLESTRRELETNK 617
S I L + S ++R LE E+R + S RRELE+ K
Sbjct: 61 SGKLSPTSSIIGGPGGSSSILPIITSQRDRFRKRNTELEEELRKQNQTISSLRRELESLK 120
Query: 618 DQTIELRAKSK 628
I+L K +
Sbjct: 121 ADNIKLYEKIR 131
>gnl|CDD|239462 cd03346, eu_TrpOH, Eukaryotic tryptophan hydroxylase (TrpOH); a
member of the biopterin-dependent aromatic amino acid
hydroxylase family of non-heme, iron(II)-dependent
enzymes that also includes prokaryotic and eukaryotic
phenylalanine-4-hydroxylase (PheOH) and eukaryotic
tyrosine hydroxylase (TyrOH). TrpOH oxidizes
L-tryptophan to 5-hydroxy-L-tryptophan, the
rate-limiting step in the biosynthesis of serotonin
(5-hydroxytryptamine), a widely distributed hormone and
neurotransmitter.
Length = 287
Score = 29.4 bits (66), Expect = 7.5
Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 16/117 (13%)
Query: 657 LFKDPQPAQSKLEKAEGELTTVREENKKLKVSFFFTLESNSLFWL--DPNTF-------L 707
L DP AQ E L E+ +KL +FFT+E F L L
Sbjct: 175 LLADPSFAQFSQEIGLASLGASDEDIQKLATCYFFTVE----FGLCKQDGQLKVYGAGLL 230
Query: 708 SSLEDLKSNYTERESKLRSANEIIGEYETKITALESTMTRSESY---CKEMVEYLET 761
SS+ +LK + ++ + E IT + SES+ ++M E+ +T
Sbjct: 231 SSIGELKHALSGEAKVKPFDPKVTCKQECLITTFQEAYFVSESFEEAKEKMREFAKT 287
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 29.0 bits (66), Expect = 7.5
Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 13/98 (13%)
Query: 468 KELEVLRGE-LEEQKTATKQWKKDWYQSVKERNAAVAEL-KQAQTENEALKEKLTSLEQE 525
KE E L+ E L E K + + + + +KER + K+ + E L K SLE+
Sbjct: 45 KEAEALKKEALLEAKEEIHKLRAEAERELKERRNELQRQEKRLLQKEETLDRKDESLEK- 103
Query: 526 LKVSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQ 563
EE+L + L ++ + +E ++E+E+
Sbjct: 104 ---KEESLEEKEKELAARQQ-------QLEEKEEELEE 131
>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase;
Provisional.
Length = 389
Score = 29.4 bits (67), Expect = 7.6
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 749 ESYCKEMVEYLETLQKNNDILSHDNEQLRKKNNDILSHDNEQLR 792
E E+ E + L+ L +NE+L ++ L + E+L+
Sbjct: 7 EERNSELEEQIRQLELKLRDLEAENEKLERELE-RLKSELEKLK 49
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating
phosphoglycerate transport system [Signal transduction
mechanisms].
Length = 673
Score = 29.5 bits (66), Expect = 7.7
Identities = 25/130 (19%), Positives = 55/130 (42%), Gaps = 8/130 (6%)
Query: 460 KLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTE------NE 513
+ E+ +++ L +L + E+ + ++ ++ V+ER A A LK+ Q E
Sbjct: 390 RDELGRIAQLLRLLLQRVNEKTQSLRERNQELQAEVEERQEAEAHLKKTQGELIQAAKLA 449
Query: 514 ALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQ--ALSNTIESMQKEMEQSAVRVREM 571
+ + +TSL E+ A++ S L E + +++ ++ E+ V +
Sbjct: 450 VVGQTMTSLAHEINQPLNAMSAYLFSARLALEEAPSAQAATSLDKIENLTERMGKIVNSL 509
Query: 572 SGISEKYEKD 581
+ K D
Sbjct: 510 RQFARKNSSD 519
>gnl|CDD|212102 cd10790, GH38N_AMII_1, N-terminal catalytic domain of putative
prokaryotic class II alpha-mannosidases; glycoside
hydrolase family 38 (GH38). This mainly bacterial
subfamily corresponds to a group of putative class II
alpha-mannosidases, including various proteins assigned
as alpha-mannosidases, Streptococcus pyogenes (SpGH38)
encoded by ORF spy1604. Escherichia coli MngB encoded by
the mngB/ybgG gene, and Thermotoga maritime TMM, and
similar proteins. SpGH38 targets alpha-1,3 mannosidic
linkages. SpGH38 appears to exist as an elongated dimer
and display alpha-1,3 mannosidase activity. It is active
on disaccharides and some aryl glycosides. SpGH38 can
also effectively deglycosylate human N-glycans in vitro.
MngB exhibits alpha-mannosidase activity that catalyzes
the conversion of
2-O-(6-phospho-alpha-mannosyl)-D-glycerate to
mannose-6-phosphate and glycerate in the pathway which
enables use of mannosyl-D-glycerate as a sole carbon
source. TMM is a homodimeric enzyme that hydrolyzes
p-nitrophenyl-alpha-D-mannopyranoside, alpha
-1,2-mannobiose, alpha -1,3-mannobiose, alpha
-1,4-mannobiose, and alpha -1,6-mannobiose. The GH38
family contains retaining glycosyl hydrolases that
employ a two-step mechanism involving the formation of a
covalent glycosyl enzyme complex. Two carboxylic acids
positioned within the active site act in concert: one as
a catalytic nucleophile and the other as a general
acid/base catalyst. Divalent metal ions, such as zinc or
cobalt ions, are suggested to be required for the
catalytic activities of typical class II
alpha-mannosidases. However, TMM requires the cobalt or
cadmium for its activity. The cadmium ion dependency is
unique to TMM. Moreover, TMM is inhibited by swainsonine
but not 1-deoxymannojirimycin, which is in agreement
with the features of cytosolic alpha-mannosidase.
Length = 273
Score = 29.4 bits (66), Expect = 7.8
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 15/86 (17%)
Query: 680 EENKKLKVSFFFTL----ESNS--LFWLDPNTFLSSLEDLKSNYTERESKLR----SANE 729
E+ K ++ F L + + F LD T + LED + ERE KLR S
Sbjct: 19 EQTHKWLINLFERLLELIQKDPEYSFVLDGQTAI--LEDYLKVFPEREKKLRQAIKSGKL 76
Query: 730 IIGEYETKITALESTMTRSESYCKEM 755
IIG Y +I + +T ES +
Sbjct: 77 IIGPYYIQI---DWRITSEESIVRNF 99
>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390). This is a
family of long proteins currently only found in the rice
genome. They have no known function. However they may be
some kind of transposable element.
Length = 843
Score = 29.8 bits (66), Expect = 7.9
Identities = 43/184 (23%), Positives = 73/184 (39%), Gaps = 8/184 (4%)
Query: 368 AEAKASLEDLSCSRTRVLALQAQVSSLQQDLTSHTSLLSKKEEEIDRLRQEMVKKESDLV 427
A + + E+ + SR R AL+A+ +L++ + L+ +E + + E+
Sbjct: 510 AREQRAAENEAASRQREEALEARAMALEERACAKERDLADREAAVAIREATLAAHEAACA 569
Query: 428 ATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQW 487
L L E L+E E + L + E ++E E R LE +
Sbjct: 570 EEEFALRLREDALTERERALEEAEAAAQQLADSLFLREAAQE-EQARRNLE----GARAE 624
Query: 488 KKDWYQSVKERNAAVAELK-QAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLRE 546
+ Q E A EL +A + A + L L +E ++A Q +LDS E
Sbjct: 625 RAALDQRAAELEARAKELDARAHSGGAAAGD--GDLAARLAAAEHSIADLQCALDSSAGE 682
Query: 547 HQAL 550
+AL
Sbjct: 683 VEAL 686
>gnl|CDD|224455 COG1538, TolC, Outer membrane protein [Cell envelope biogenesis,
outer membrane / Intracellular trafficking and
secretion].
Length = 457
Score = 29.4 bits (66), Expect = 8.1
Identities = 19/90 (21%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 499 NAAVAELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQALSNTIESMQ 558
A ++QA+ + +A + + + +A A +L++ L + QAL +E+ Q
Sbjct: 334 GRLRARVRQAEAQYDAALAQYEQTVLTAR---QEVADALAALEAALEQLQALRQAVEAAQ 390
Query: 559 KEMEQSAVRVREMSGISEKYEKDRKTLLEL 588
+ +E + E+Y+ +TLL++
Sbjct: 391 EALELA----------RERYQAGVRTLLDV 410
Score = 29.4 bits (66), Expect = 9.4
Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 7/67 (10%)
Query: 476 ELEEQKTATKQWKKDWYQSVK-------ERNAAVAELKQAQTENEALKEKLTSLEQELKV 528
+EQ ++ + ++ A ++ QA+ + + + +L + + +L
Sbjct: 165 AAQEQLALAEETLAAAEEQLELAEKRYDAGLATRLDVLQAEAQLASARAQLAAAQAQLAQ 224
Query: 529 SEEALAT 535
+ ALA
Sbjct: 225 ARNALAR 231
>gnl|CDD|225714 COG3173, COG3173, Predicted aminoglycoside phosphotransferase
[General function prediction only].
Length = 321
Score = 29.3 bits (66), Expect = 8.1
Identities = 10/47 (21%), Positives = 18/47 (38%)
Query: 112 ARFYIYELAQAVQYLHGLGYVHRDIKPDNMLLSATGHLKLTDFGSAT 158
R + A + VH D +P N+++ + D+ AT
Sbjct: 181 DRLIKWLEANRPPWAGPPVLVHGDYRPGNLIIDPGRPTGVLDWELAT 227
>gnl|CDD|232808 TIGR00069, hisD, histidinol dehydrogenase. This model describes a
polypeptide sequence catalyzing the final step in
histidine biosynthesis, found sometimes as an
independent protein and sometimes as a part of a
multifunctional protein [Amino acid biosynthesis,
Histidine family].
Length = 393
Score = 29.4 bits (67), Expect = 8.2
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 525 ELKVSEEALATAQNSLDSKLRE--HQALSNTIESMQKEMEQSAVRVREMSGI 574
L+VSEE + A ++D +L+E A N I + + + V G+
Sbjct: 30 SLRVSEEEIEAAYAAVDPELKEALELAAEN-IRAFHEAQLPRSWEVETEPGV 80
>gnl|CDD|233595 TIGR01845, outer_NodT, efflux transporter, outer membrane factor
(OMF) lipoprotein, NodT family. Members of This model
comprise a subfamily of the Outer Membrane Factor (TCDB
1.B.17) porins. OMF proteins operate in conjunction with
a primary transporter of the RND, MFS, ABC, or PET
systems, and a MFP (membrane fusion protein) to tranport
substrates across membranes. The complex thus formed
allows transport (export) of various solutes (heavy
metal cations; drugs, oligosaccharides, proteins, etc.)
across the two envelopes of the Gram-negative bacterial
cell envelope in a single energy-coupled step. Current
data suggest that the OMF (and not the MFP) is largely
responsible for the formation of both the trans-outer
membrane and trans-periplasmic channels. The roles
played by the MFP have yet to be determined [Cellular
processes, Detoxification, Transport and binding
proteins, Porins].
Length = 454
Score = 29.3 bits (66), Expect = 8.4
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 15/99 (15%)
Query: 358 RDRLQLLQ-QLAEAKASLEDLSCSRTRVLALQAQVSSLQQ--DLTSH--TSLLSKKE--- 409
R L+L Q + A A+ D+ + V + +A++ SL + +LL K
Sbjct: 190 RKTLELTQKRYAAGVAAASDVRQAEAAVASAEAELPSLDVQIAQARNALAALLGKGPSRG 249
Query: 410 EEIDR------LRQEMVKK-ESDLVATSSDLVATRHELE 441
I R L ++ SDL+ D+ A L
Sbjct: 250 LAIARPLLLDQLPPDLPLSLPSDLLRRRPDIRAAERRLA 288
>gnl|CDD|132534 TIGR03495, phage_LysB, phage lysis regulatory protein, LysB family.
Members of this protein family are phage lysis
regulatory protein, including the well-studied protein
LysB (lysis protein B) of Enterobacteria phage P2. For
members of this family, genes are found in phage or in
prophage regions of bacterial genomes, typically near a
phage lysozyme or phage holin.
Length = 135
Score = 28.1 bits (63), Expect = 8.5
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 20/80 (25%)
Query: 491 WYQSVKERNA------AVAELKQAQTENEALKEKLTSLEQELKVSEEA------------ 532
+QS + RNA A LK Q E + +L L K +EEA
Sbjct: 15 GWQSQRLRNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQAR 74
Query: 533 --LATAQNSLDSKLREHQAL 550
LA + ++ RE++ L
Sbjct: 75 ALLAQREQRIERLKRENEDL 94
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 29.3 bits (66), Expect = 8.6
Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 13/87 (14%)
Query: 442 EVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSVKERNAA 501
EV S+ + L K + E+ + +E + + +++E K + ++E +
Sbjct: 27 EVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAK-----------EILEESDPE 75
Query: 502 VAELKQAQTENEALKEKLTSLEQELKV 528
+ E+ A+ E E L+EK+ LE++LKV
Sbjct: 76 MREM--AKEELEELEEKIEELEEQLKV 100
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 29.5 bits (66), Expect = 8.7
Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 23/162 (14%)
Query: 414 RLRQEMVKKESDLVATSSDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVL 473
+++ E L+ + V R + E +K+ E +K + E +E
Sbjct: 25 KMKSAKEAAELTLLNAEQEAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKY 84
Query: 474 RGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQE---LKVSE 530
R E+E++ + +Q ELKQ ++ L E+ TSL+++ L E
Sbjct: 85 REEIEQEFKSERQ-----------------ELKQIESR---LTERATSLDRKDENLSSKE 124
Query: 531 EALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMS 572
+ L + + SL K + +E ++++ + RV +S
Sbjct: 125 KTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELERVAALS 166
>gnl|CDD|218380 pfam05010, TACC, Transforming acidic coiled-coil-containing protein
(TACC). This family contains the proteins TACC 1, 2 and
3 the genes for which are found concentrated in the
centrosomes of eukaryotic and may play a conserved role
in organising centrosomal microtubules. The human TACC
proteins have been linked to cancer and TACC2 has been
identified as a possible tumour suppressor (AZU-1). The
functional homologue (Alp7) in Schizosaccharomyces pombe
has been shown to be required for organisation of
bipolar spindles.
Length = 207
Score = 28.9 bits (65), Expect = 8.7
Identities = 44/218 (20%), Positives = 91/218 (41%), Gaps = 28/218 (12%)
Query: 468 KELEVLRGELEEQKTATKQWKKDWYQSVKERNAAVAELKQAQTENEALKEKLTSLEQELK 527
K+++ +++ + +++ ++ + ++ + E+ + E E ++ Q ++
Sbjct: 5 KDMDAALKKIKREVISSELESEELKKKYEKLRSENLEMGKIVDEFE------KTIAQMIE 58
Query: 528 VSEEALATAQNSLDSKLREHQALSNTIESMQKEMEQSAVRVREMSGISEKYEKDRKTLLE 587
S++ ++ L L E + S++ R + + E Y+K+ +TL
Sbjct: 59 ESQKQKELSKRELQEVLAEKDQAYADLNSLETSFSDLFKRYEKYKEVIEGYKKNEETL-- 116
Query: 588 LKSAKERLELEVRGYKLDLESTRRELETNKDQTIELRAKSKLEKAEGELTTVREENKKLK 647
K A+E L+ R + E + Q ++ A+ KLE A E+ VR K K
Sbjct: 117 KKCAQEYLD-------------RLKKEEQRYQALKAHAEEKLEIANEEIAQVR---SKAK 160
Query: 648 QGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREENKKL 685
L SL K Q K++ E L +EN++L
Sbjct: 161 AETAALQASLRK----EQMKVQSLEETLEQKNKENEEL 194
>gnl|CDD|193253 pfam12777, MT, Microtubule-binding stalk of dynein motor. the 380
kDa motor unit of dynein belongs to the AAA class of
chaperone-like ATPases. The core of the 380 kDa motor
unit contains a concatenated chain of six AAA modules,
of which four correspond to the ATP binding sites with
P-loop signatures described previously, and two are
modules in which the P loop has been lost in evolution.
This family is the region between D4 and D5 and is the
two predicted alpha-helical coiled coil segments that
form the stalk supporting the ATP-sensitive microtubule
binding component.
Length = 344
Score = 29.2 bits (65), Expect = 8.8
Identities = 22/100 (22%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 454 EKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKDWYQSV-----------KERNAAV 502
E+ ++ +++ + +++ L+ +L Q+ KQ +D + + KE+ A
Sbjct: 1 ERLENGLMKLQSTASQVDDLKAKLAIQEVELKQKNEDADKLIQVVGVETEKVSKEKAIAD 60
Query: 503 AELKQAQTENEALKEKLTSLEQELKVSEEALATAQNSLDS 542
E + N+ + EK E++L +E AL AQ +L++
Sbjct: 61 QEEVKVAVINKEVTEKQKDCEEDLAKAEPALLAAQEALNT 100
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 29.3 bits (66), Expect = 8.9
Identities = 33/190 (17%), Positives = 72/190 (37%), Gaps = 27/190 (14%)
Query: 431 SDLVATRHELEEVRSELKEKENLEKTDDRKLEVCEVSKELEVLRGELEEQKTATKQWKKD 490
++++ E E E+ + E ++T ++ + + +VL E +WK
Sbjct: 141 AEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVL-----ESLIDAAEWKL- 194
Query: 491 WYQSVKERNAAVAELKQ-AQTENEALKEKLTSLEQELKVSEEALATAQNSLDSKLREHQA 549
E + +LK +T+ + + L + Q K ++L + L + Q
Sbjct: 195 ------EVERVLPQLKVTIKTDAKDWRSHLEQMHQLKKAISKSLPETKQYLK---KLSQD 245
Query: 550 LSNTIESMQK-----------EMEQSAVRVREMSGISEKYEKDRKTLLELKSAKERLELE 598
LS +E + +++ R +S + EKY + + + EL + E
Sbjct: 246 LSKALEKISSREKHLNNQLEQLVQEYREARRTLSQVQEKYNQASQGVSELTRELNEISEE 305
Query: 599 VRGYKLDLES 608
+ K ++E
Sbjct: 306 LEQVKQEMEE 315
>gnl|CDD|182488 PRK10476, PRK10476, multidrug resistance protein MdtN; Provisional.
Length = 346
Score = 29.2 bits (66), Expect = 9.2
Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 641 EENKKLKQGKIRLVYSLFKDPQPAQSKLEKAEGELTTVREE 681
EN+ +K+G L++ + DP+P + + +A+ +L +
Sbjct: 65 TENQAVKKGD--LLFRI--DPRPYELTVAQAQADLALADAQ 101
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.128 0.348
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 38,826,782
Number of extensions: 3804821
Number of successful extensions: 8249
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5870
Number of HSP's successfully gapped: 1307
Length of query: 792
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 687
Effective length of database: 6,280,432
Effective search space: 4314656784
Effective search space used: 4314656784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.2 bits)