Query psy13739
Match_columns 89
No_of_seqs 4 out of 6
Neff 1.8
Searched_HMMs 29240
Date Fri Aug 16 19:19:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13739.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13739hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 8tfv_A Protein (thanatin); bac 9.5 1.2E+02 0.004 15.6 1.0 7 40-46 4-10 (21)
2 4ebr_A Ubiquitin-like-conjugat 6.6 1.5E+02 0.005 20.0 0.7 13 36-48 71-83 (169)
3 1w8x_M Protein P30, protein P, 5.1 3.6E+02 0.012 17.5 1.9 18 18-35 11-28 (83)
4 3vx7_B E2; ubiquitin conjugati 2.9 5.2E+02 0.018 18.0 1.3 13 36-48 57-69 (152)
5 2dyt_A Autophagy-related prote 1.9 6.6E+02 0.022 19.4 0.7 13 37-49 178-190 (312)
6 3vx8_B Autophagy-related prote 1.2 1.1E+03 0.039 17.9 0.7 13 37-49 181-193 (292)
7 2lpu_A Kmatg10; autophagy, E2- 1.7 8.6E+02 0.029 17.2 0.0 14 35-48 56-69 (152)
8 2ny1_A Envelope glycoprotein G 1.1 1.4E+03 0.049 17.7 1.1 11 39-49 64-74 (317)
9 2k48_A Nucleoprotein; viral pr 1.0 2.2E+03 0.074 14.4 1.7 15 6-20 10-24 (107)
10 1u3o_A Huntingtin-associated p 1.0 1.8E+03 0.061 13.6 1.1 13 75-87 70-82 (82)
No 1
>8tfv_A Protein (thanatin); bactericidal, fungicidal, antimicrobial; NMR {Synthetic} SCOP: j.3.1.2
Probab=9.52 E-value=1.2e+02 Score=15.64 Aligned_cols=7 Identities=71% Similarity=1.241 Sum_probs=3.1
Q ss_pred Cccceee
Q psy13739 40 YPVPIHY 46 (89)
Q Consensus 40 ~pvP~ly 46 (89)
.|||++|
T Consensus 4 kpvpiiy 10 (21)
T 8tfv_A 4 KPVPIIY 10 (26)
T ss_dssp CCCCCEE
T ss_pred CcccEEE
Confidence 3444444
No 2
>4ebr_A Ubiquitin-like-conjugating enzyme ATG10; autophagy, ligase, protein binding, A ATG5, thiolation; 2.70A {Saccharomyces cerevisiae}
Probab=6.60 E-value=1.5e+02 Score=20.02 Aligned_cols=13 Identities=31% Similarity=0.378 Sum_probs=10.2
Q ss_pred CCCCCccceeeec
Q psy13739 36 PSSPYPVPIHYLS 48 (89)
Q Consensus 36 lss~~pvP~lyLs 48 (89)
.+.+++||.||+.
T Consensus 71 Ys~sYqVPvL~f~ 83 (169)
T 4ebr_A 71 YSKVYNEPLLLLR 83 (169)
T ss_dssp EETTTTEEEEEEE
T ss_pred EecccCCcEEEEE
Confidence 4678899998884
No 3
>1w8x_M Protein P30, protein P, GPP; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=5.06 E-value=3.6e+02 Score=17.54 Aligned_cols=18 Identities=33% Similarity=0.671 Sum_probs=13.1
Q ss_pred CCcCcCCCCCCCCccccC
Q psy13739 18 HPLPIQSPSTTHPVPTHY 35 (89)
Q Consensus 18 ~plP~~~ls~t~~vP~~y 35 (89)
.|+|+.-.+.|+-+|++-
T Consensus 11 gpvpipgpaptetmplln 28 (83)
T 1w8x_M 11 GPVPIPGPAPTETMPLLN 28 (83)
T ss_dssp SSCCTTCCCCCCCCCCCC
T ss_pred CCCCCCCCCCcccccccc
Confidence 467777777887777764
No 4
>3vx7_B E2; ubiquitin conjugation; 3.20A {Kluyveromyces marxianus} PDB: 2lpu_A
Probab=2.86 E-value=5.2e+02 Score=18.02 Aligned_cols=13 Identities=23% Similarity=0.227 Sum_probs=9.7
Q ss_pred CCCCCccceeeec
Q psy13739 36 PSSPYPVPIHYLS 48 (89)
Q Consensus 36 lss~~pvP~lyLs 48 (89)
-+..+++|.+|+-
T Consensus 57 Ys~~YqvPvL~fR 69 (152)
T 3vx7_B 57 YDHVYHVPSIKFR 69 (152)
T ss_dssp ECSSSSSEEEEEE
T ss_pred EeccccCceEEEE
Confidence 4677888888874
No 5
>2dyt_A Autophagy-related protein 3; E2 fold, ligase; 2.50A {Saccharomyces cerevisiae}
Probab=1.89 E-value=6.6e+02 Score=19.39 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=10.0
Q ss_pred CCCCccceeeecC
Q psy13739 37 SSPYPVPIHYLSS 49 (89)
Q Consensus 37 ss~~pvP~lyLs~ 49 (89)
+..|++|.|||..
T Consensus 178 s~sYqvPvLyf~g 190 (312)
T 2dyt_A 178 STSYRVPKMYIVG 190 (312)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ecCccCCeEEEEe
Confidence 6678888888863
No 6
>3vx8_B Autophagy-related protein 3; E1-E2 complex, ligase; 3.11A {Arabidopsis thaliana}
Probab=1.17 E-value=1.1e+03 Score=17.90 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.4
Q ss_pred CCCCccceeeecC
Q psy13739 37 SSPYPVPIHYLSS 49 (89)
Q Consensus 37 ss~~pvP~lyLs~ 49 (89)
+..|++|.|||..
T Consensus 181 s~~YqtPrLyl~g 193 (292)
T 3vx8_B 181 DKYYQTPRVWLTG 193 (292)
T ss_dssp ETTTTEEEEEEEE
T ss_pred ECCCCCCeEEEEE
Confidence 4568888888753
No 7
>2lpu_A Kmatg10; autophagy, E2-like, proteolysis, protein transport; NMR {Kluyveromyces marxianus}
Probab=1.70 E-value=8.6e+02 Score=17.22 Aligned_cols=14 Identities=29% Similarity=0.396 Sum_probs=9.3
Q ss_pred CCCCCCccceeeec
Q psy13739 35 YPSSPYPVPIHYLS 48 (89)
Q Consensus 35 ylss~~pvP~lyLs 48 (89)
..+.+|+||.+++-
T Consensus 56 ~Y~~~YqVP~L~fR 69 (152)
T 2lpu_A 56 YYDHVYHVPSIKFR 69 (152)
Confidence 45667777777764
No 8
>2ny1_A Envelope glycoprotein GP120; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Human immunodeficiency virus 1} SCOP: d.172.1.1 PDB: 2nxz_A* 2nxy_A* 1g9m_G* 1rzj_G* 2ny7_G* 2ny5_G* 3idx_G* 3idy_G* 2ny2_A* 1gc1_G* 2ny4_A* 2ny3_A* 2ny6_A* 2ny0_A* 1yym_G* 1rzk_G* 1g9n_G* 1yyl_G* 2i5y_G* 2i60_G* ...
Probab=1.10 E-value=1.4e+03 Score=17.67 Aligned_cols=11 Identities=45% Similarity=0.896 Sum_probs=6.6
Q ss_pred CCccceeeecC
Q psy13739 39 PYPVPIHYLSS 49 (89)
Q Consensus 39 ~~pvP~lyLs~ 49 (89)
-+|+|+||-++
T Consensus 64 fepipihyCAP 74 (317)
T 2ny1_A 64 FEPIPIHYCAP 74 (317)
T ss_dssp CCCCCBCCBCC
T ss_pred ccccceeeecC
Confidence 35666666554
No 9
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=1.02 E-value=2.2e+03 Score=14.37 Aligned_cols=15 Identities=40% Similarity=0.602 Sum_probs=7.2
Q ss_pred CCccceecccCCCCc
Q psy13739 6 PYPVPIHYLSSPHPL 20 (89)
Q Consensus 6 ~~pvP~~yLss~~pl 20 (89)
|-|-|++-|.|++.|
T Consensus 10 ~~~~~~~~~~~~~~~ 24 (107)
T 2k48_A 10 PIPNPLLGLDSTENL 24 (107)
T ss_dssp CCCCSCCSCCCCCCC
T ss_pred CCCCccccccccchh
Confidence 444455555555443
No 10
>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}
Probab=0.97 E-value=1.8e+03 Score=13.60 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=0.0
Q ss_pred cccccccCCCCCC
Q psy13739 75 VPIHYLSSPHPHS 87 (89)
Q Consensus 75 vpl~~ls~~~p~~ 87 (89)
||.-||...|-++
T Consensus 70 VPsnyl~~~~~~~ 82 (82)
T 1u3o_A 70 VPSSTLCISHSRS 82 (82)
T ss_dssp EEGGGSCCCCC--
T ss_pred ccccEEeccccCC
Done!