Query psy13739
Match_columns 89
No_of_seqs 4 out of 6
Neff 1.8
Searched_HMMs 13730
Date Fri Aug 16 19:19:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13739.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/13739hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2rdea2 b.45.2.2 (A:24-137) Hy 1.7 4.5E+02 0.033 15.0 1.2 11 41-51 95-105 (114)
2 d2g7oa1 a.241.1.1 (A:60-127) T 1.2 2.1E+02 0.015 16.7 -1.2 11 77-87 25-35 (68)
3 d2nxya1 d.172.1.1 (A:83-491) g 0.9 9E+02 0.066 16.6 1.3 11 39-49 64-74 (316)
4 d2fzva1 c.23.5.4 (A:1-233) Put 0.9 1.7E+03 0.12 13.5 3.7 28 14-41 6-33 (233)
5 d1je3a_ d.68.3.3 (A:) hypothet 0.7 9.3E+02 0.068 13.0 0.5 8 50-57 36-43 (97)
6 d1b74a2 c.78.2.1 (A:106-252) G 0.7 1.3E+03 0.096 13.1 1.2 8 44-51 68-75 (147)
7 d1o4wa_ c.120.1.1 (A:) Hypothe 0.6 1E+03 0.075 12.9 0.6 7 42-48 109-115 (125)
8 d1pv1a_ c.69.1.34 (A:) Hypothe 0.6 1.4E+03 0.1 14.0 1.4 11 37-47 44-54 (299)
9 d1sfra_ c.69.1.3 (A:) Antigen 0.6 1.6E+03 0.11 12.6 1.4 17 42-58 23-39 (288)
10 d1vzva_ b.57.1.1 (A:) VZV prot 0.6 1E+03 0.074 15.7 0.4 15 75-89 106-120 (221)
No 1
>d2rdea2 b.45.2.2 (A:24-137) Hypothetical protein VCA0042, N-terminal domain {Vibrio cholerae O395 [TaxId: 345073]}
Probab=1.69 E-value=4.5e+02 Score=15.00 Aligned_cols=11 Identities=55% Similarity=1.168 Sum_probs=4.9
Q ss_pred ccceeeecCCC
Q psy13739 41 PVPIHYLSSPH 51 (89)
Q Consensus 41 pvP~lyLs~~~ 51 (89)
|.|+++|+-|.
T Consensus 95 P~~~L~Ls~P~ 105 (114)
T d2rdea2 95 PVPMAFLSIPN 105 (114)
T ss_dssp SSCEEEECCCS
T ss_pred CeeEEEEeCCh
Confidence 44444444443
No 2
>d2g7oa1 a.241.1.1 (A:60-127) TraM {Escherichia coli [TaxId: 562]}
Probab=1.24 E-value=2.1e+02 Score=16.71 Aligned_cols=11 Identities=36% Similarity=0.407 Sum_probs=6.7
Q ss_pred cccccCCCCCC
Q psy13739 77 IHYLSSPHPHS 87 (89)
Q Consensus 77 l~~ls~~~p~~ 87 (89)
|+-+.|.|||-
T Consensus 25 iLGI~~lSPHv 35 (68)
T d2g7oa1 25 ILGIESLSPHV 35 (68)
T ss_dssp HHHHHHTCGGG
T ss_pred HhcccccCccc
Confidence 34456777773
No 3
>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=0.90 E-value=9e+02 Score=16.58 Aligned_cols=11 Identities=45% Similarity=0.896 Sum_probs=6.1
Q ss_pred CCccceeeecC
Q psy13739 39 PYPVPIHYLSS 49 (89)
Q Consensus 39 ~~pvP~lyLs~ 49 (89)
-+|+|++|-++
T Consensus 64 fepipi~yCAP 74 (316)
T d2nxya1 64 FEPIPIHYCAP 74 (316)
T ss_dssp CCCCCBCCBCC
T ss_pred ccccceeeecc
Confidence 35566666554
No 4
>d2fzva1 c.23.5.4 (A:1-233) Putative arsenical resistance protein {Shigella flexneri [TaxId: 623]}
Probab=0.85 E-value=1.7e+03 Score=13.54 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=18.8
Q ss_pred ccCCCCcCcCCCCCCCCccccCCCCCCc
Q psy13739 14 LSSPHPLPIQSPSTTHPVPTHYPSSPYP 41 (89)
Q Consensus 14 Lss~~plP~~~ls~t~~vP~~ylss~~p 41 (89)
++-|.-+|++.-+-.+.+|++-..-..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 33 (233)
T d2fzva1 6 LSDPDSLPALDKSFAIERPALGLAPDAP 33 (233)
T ss_dssp CSSTTCCTTSCTTTCCSCTTTTTSCCCS
T ss_pred CCCCcCCCccChhhccCCccccCCCCCC
Confidence 4556667777777777777776655553
No 5
>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005) {Escherichia coli [TaxId: 562]}
Probab=0.69 E-value=9.3e+02 Score=12.99 Aligned_cols=8 Identities=38% Similarity=0.845 Sum_probs=4.0
Q ss_pred CCCcCccc
Q psy13739 50 PHPLPIQS 57 (89)
Q Consensus 50 ~~plP~~~ 57 (89)
.||.|++.
T Consensus 36 ~CP~Pll~ 43 (97)
T d1je3a_ 36 PCPYPAVA 43 (97)
T ss_dssp SSSSSTHH
T ss_pred cCCHHHHH
Confidence 45555543
No 6
>d1b74a2 c.78.2.1 (A:106-252) Glutamate racemase {Aquifex pyrophilus [TaxId: 2714]}
Probab=0.66 E-value=1.3e+03 Score=13.08 Aligned_cols=8 Identities=25% Similarity=0.310 Sum_probs=0.0
Q ss_pred eeeecCCC
Q psy13739 44 IHYLSSPH 51 (89)
Q Consensus 44 ~lyLs~~~ 51 (89)
.+-|.|||
T Consensus 68 ~lvLGCTH 75 (147)
T d1b74a2 68 TLILGCTH 75 (147)
T ss_dssp EEEECCCC
T ss_pred EEEEecCc
No 7
>d1o4wa_ c.120.1.1 (A:) Hypothetical protein AF0591 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=0.65 E-value=1e+03 Score=12.89 Aligned_cols=7 Identities=43% Similarity=1.156 Sum_probs=0.0
Q ss_pred cceeeec
Q psy13739 42 VPIHYLS 48 (89)
Q Consensus 42 vP~lyLs 48 (89)
+|++|++
T Consensus 109 Vpvi~l~ 115 (125)
T d1o4wa_ 109 IPVGYLK 115 (125)
T ss_dssp CCEECCC
T ss_pred CcEEEEe
No 8
>d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=0.64 E-value=1.4e+03 Score=14.04 Aligned_cols=11 Identities=9% Similarity=0.289 Sum_probs=0.0
Q ss_pred CCCCccceeee
Q psy13739 37 SSPYPVPIHYL 47 (89)
Q Consensus 37 ss~~pvP~lyL 47 (89)
+...+.|+|||
T Consensus 44 ~~~~~yPVLYl 54 (299)
T d1pv1a_ 44 PRNKRIPTVFY 54 (299)
T ss_dssp SSCTTBCEEEE
T ss_pred ccCCCCCEEEE
No 9
>d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=0.61 E-value=1.6e+03 Score=12.63 Aligned_cols=17 Identities=18% Similarity=0.292 Sum_probs=0.0
Q ss_pred cceeeecCCCCcCcccc
Q psy13739 42 VPIHYLSSPHPLPIQSL 58 (89)
Q Consensus 42 vP~lyLs~~~plP~~~L 58 (89)
+++.......+.|++++
T Consensus 23 ~~~~v~~p~~~~Pvl~l 39 (288)
T d1sfra_ 23 IKVQFQSGGANSPALYL 39 (288)
T ss_dssp EEEEEECCSTTBCEEEE
T ss_pred EEEEEeCCCCCceEEEE
No 10
>d1vzva_ b.57.1.1 (A:) VZV protease {Varicella-Zoster virus [TaxId: 10335]}
Probab=0.60 E-value=1e+03 Score=15.65 Aligned_cols=15 Identities=33% Similarity=0.255 Sum_probs=0.0
Q ss_pred cccccccCCCCCCCC
Q psy13739 75 VPIHYLSSPHPHSVE 89 (89)
Q Consensus 75 vpl~~ls~~~p~~~~ 89 (89)
+|-.+|||.+++..|
T Consensus 106 LPslSLSS~~~~~~~ 120 (221)
T d1vzva_ 106 LPSVSLSSKRLSPNE 120 (221)
T ss_dssp SCEEEEECSCC----
T ss_pred cchhhcccCCCCCCC
Done!