RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13739
(89 letters)
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 36.2 bits (83), Expect = 4e-04
Identities = 16/83 (19%), Positives = 27/83 (32%)
Query: 2 SHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTT 61
+ + P +++P P P P H P S PI+ + P + +
Sbjct: 21 NSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPH 80
Query: 62 HPVPTHYPSGPYPVPIHYLSSPH 84
P+ + LSSP
Sbjct: 81 SMSVPTTPTLGFSTGSPQLSSPM 103
Score = 28.5 bits (63), Expect = 0.27
Identities = 9/74 (12%), Positives = 18/74 (24%), Gaps = 1/74 (1%)
Query: 14 LSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPTHYPSGPY 73
++ H + + + ++P P P H P
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSM-AAPSLHPSLGPGIGSPGQLHSPISTL 59
Query: 74 PVPIHYLSSPHPHS 87
PI+ + P
Sbjct: 60 SSPINGMGPPFSVI 73
Score = 25.1 bits (54), Expect = 3.7
Identities = 11/75 (14%), Positives = 19/75 (25%)
Query: 13 YLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPTHYPSGP 72
+ S T P ++P P P + S +T P + P
Sbjct: 10 DDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPP 69
Query: 73 YPVPIHYLSSPHPHS 87
+ V +
Sbjct: 70 FSVISSPMGPHSMSV 84
Score = 23.9 bits (51), Expect = 8.9
Identities = 12/87 (13%), Positives = 22/87 (25%)
Query: 1 MSHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLST 60
M+ S +P + SP L + + P+ P S +L
Sbjct: 33 MAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGF 92
Query: 61 THPVPTHYPSGPYPVPIHYLSSPHPHS 87
+ P + P +
Sbjct: 93 STGSPQLSSPMNPVSSSEDIKPPLGLN 119
>1xfi_A Unknown protein; structural genomics, protein structure
initiative, CESG, AT2G17340, center for eukaryotic
structural genomics; 1.70A {Arabidopsis thaliana} SCOP:
e.50.1.1 PDB: 2q40_A
Length = 367
Score = 27.4 bits (60), Expect = 0.58
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 24 SPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPTH 67
S S + VP +P P P+ +Y + P S P
Sbjct: 1 SESDSEMVP--FPQLPMPIENNYRACTIPYRFPSDDPKKATPNE 42
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 26.5 bits (58), Expect = 1.3
Identities = 9/54 (16%), Positives = 12/54 (22%), Gaps = 4/54 (7%)
Query: 1 MSHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLP 54
H+ Y + + H YP P H LP
Sbjct: 717 SFHSGGYGQDAMGMDPMMEHEMAG----HHPGPDYPVDGLPDLGHTQDLIDGLP 766
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 26.2 bits (57), Expect = 1.5
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 9/85 (10%)
Query: 2 SHTSPYPVPI---HYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSL 58
S TSP P + +SP P SPS + P++ P+SP P SP
Sbjct: 1593 SPTSPSYSPTSPSYSATSPSYSP-TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1651
Query: 59 STTHPVPTHYPSGPYPVPIHYLSSP 83
S P++ P+ P P SP
Sbjct: 1652 S-----PSYSPTSPSYSPTSPSYSP 1671
Score = 25.4 bits (55), Expect = 3.4
Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 2 SHTSPYPVPIHYLSSPHPLPI---QSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSL 58
S TSP P +SP P SP++ PT SP S + S
Sbjct: 1621 SPTSPSYSP----TSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1676
Query: 59 STTHPVPTHYPSGPYPV-PIHYLSSPH 84
S T P + P P + +SP
Sbjct: 1677 SPTSPSYSPTSPSYSPTSPSYSPTSPS 1703
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 25.4 bits (55), Expect = 2.8
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 8/57 (14%)
Query: 30 PVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPTHYPSGPYPVPIHYLSSPHPH 86
VP + P P+P + P H P+ + H H
Sbjct: 560 TYQKPREDESEAVPAEVIVQPQPVPTPAFPFPAPTMVHGPAAAH--------HHHHH 608
>2z07_A Putative uncharacterized protein TTHA0978; uncharacterized
conserved protein, structural genomics, NPPSFA; 2.10A
{Thermus thermophilus}
Length = 420
Score = 25.3 bits (54), Expect = 3.2
Identities = 7/31 (22%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 52 PLPIQSLSTTHPV--PTHYPSGPYPVPIHYL 80
+ S+ T P P Y GP + ++++
Sbjct: 331 RYLLPSVDPTSPFFEPGRYWRGPVWINVNWM 361
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 25.3 bits (55), Expect = 3.4
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 2 SHTSP-YPVPIHYLSSPHPLPI 22
SH + + + + L + PLP
Sbjct: 204 SHMTSGWFLTVSDLMNKKPLPF 225
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 24.9 bits (54), Expect = 4.9
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 2 SHTSP-YPVPIHYLSSPHPLPI 22
SH + + + + L + PLP
Sbjct: 204 SHMTSGWFLTVSDLMNKKPLPF 225
>1q1q_A SULT2B1A, sulfotransferase family, cytosolic, 2B, member 1 isoform
A; pregnenolone, PAP; HET: A3P NHE; 2.91A {Homo sapiens}
SCOP: c.37.1.5
Length = 350
Score = 24.8 bits (54), Expect = 5.2
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 15 SSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPT 66
P P P P + T P P SSP P P Q+ T HP P+
Sbjct: 304 PDPEPSPEPEPKPSLEPNTSLEREPRP-----NSSPSPSPGQASETPHPRPS 350
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 24.3 bits (53), Expect = 6.9
Identities = 11/47 (23%), Positives = 15/47 (31%)
Query: 20 LPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPT 66
LP + + +P S PVP S P S +P
Sbjct: 529 LPTVTSAGASLLPPEDNSQASPVPPADNSGAPTEPSAGDSEVAQMPV 575
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 24.4 bits (54), Expect = 6.9
Identities = 5/26 (19%), Positives = 9/26 (34%), Gaps = 4/26 (15%)
Query: 65 PTHYPSGPYPVPI----HYLSSPHPH 86
P GP P+P ++ +
Sbjct: 8 KGKLPPGPLPLPGLGNLLHVDFQNTP 33
>2xts_A Sulfite dehydrogenase; oxidoreductase-electron transport complex,
SOX system, sulfa oxidation, molybdenum cofactor, heme,
electron transfer; HET: MTE HEC; 1.33A {Paracoccus
pantotrophus}
Length = 390
Score = 24.3 bits (53), Expect = 7.9
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 15 SSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPTHYPSGPYP 74
+P PL + + PY +PIH+ S ++ T PV + +
Sbjct: 2 GTPDPLITEIQPWASEFGEAVDAHPYGLPIHFESHVKRQYVE-WLTESPVSSINFT---- 56
Query: 75 VPIHYLSS 82
PIH L
Sbjct: 57 -PIHALEG 63
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 24.0 bits (53), Expect = 8.5
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 4/26 (15%)
Query: 65 PTHYPSGPYPVPI----HYLSSPHPH 86
P GP+P+PI L +
Sbjct: 8 KGKLPPGPFPLPIIGNLFQLELKNIP 33
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 23.8 bits (52), Expect = 9.3
Identities = 4/17 (23%), Positives = 8/17 (47%)
Query: 73 YPVPIHYLSSPHPHSVE 89
YPV ++Y ++
Sbjct: 272 YPVELYYTPEFQRDYLD 288
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 23.7 bits (51), Expect = 10.0
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 24 SPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPI 55
S S T + + +PI + + LPI
Sbjct: 7 SGSETPDLTVATRTGSKDLPIRNIPGNYGLPI 38
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.134 0.450
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,452,066
Number of extensions: 69770
Number of successful extensions: 286
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 72
Length of query: 89
Length of database: 6,701,793
Length adjustment: 57
Effective length of query: 32
Effective length of database: 5,110,296
Effective search space: 163529472
Effective search space used: 163529472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)