RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13739
         (89 letters)



>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
           and C-terminal domains {Streptococcus mutans [TaxId:
           1309]}
          Length = 317

 Score = 24.0 bits (51), Expect = 3.3
 Identities = 6/21 (28%), Positives = 8/21 (38%)

Query: 53  LPIQSLSTTHPVPTHYPSGPY 73
           L +Q L +   V     S  Y
Sbjct: 289 LDLQQLPSDFAVNVQDESSNY 309


>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 295

 Score = 23.3 bits (49), Expect = 6.0
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 55 IQSLSTTHPVPTHYPSGPYPV 75
          +Q+   + P+   YP+G +P 
Sbjct: 2  VQTDPPSVPICDLYPNGVFPK 22


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.134    0.450 

Gapped
Lambda     K      H
   0.267   0.0637    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 378,160
Number of extensions: 16499
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 18
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)