Query psy1374
Match_columns 263
No_of_seqs 222 out of 1559
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 19:19:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1374.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1374hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08740 BCS1_N: BCS1 N termin 100.0 2.7E-39 5.9E-44 277.9 19.9 156 74-230 14-187 (187)
2 KOG0743|consensus 99.8 1.2E-19 2.7E-24 173.4 1.6 169 94-263 60-236 (457)
3 KOG0743|consensus 99.5 5.7E-15 1.2E-19 141.6 5.6 91 1-110 343-436 (457)
4 COG1222 RPT1 ATP-dependent 26S 99.4 2.2E-13 4.8E-18 127.7 2.1 43 1-43 295-337 (406)
5 KOG0728|consensus 99.2 1.5E-11 3.3E-16 111.3 3.0 57 1-57 291-352 (404)
6 KOG0726|consensus 99.1 6.7E-12 1.4E-16 115.6 -0.6 43 1-43 329-371 (440)
7 KOG0729|consensus 99.0 4.8E-11 1E-15 108.9 -0.6 42 1-42 321-362 (435)
8 KOG0727|consensus 99.0 1.3E-10 2.8E-15 105.5 1.1 43 1-43 299-341 (408)
9 KOG0730|consensus 98.9 3.2E-10 7E-15 113.0 3.0 42 2-43 576-617 (693)
10 TIGR03689 pup_AAA proteasome A 98.8 2.7E-09 6E-14 105.4 3.8 43 1-43 338-380 (512)
11 KOG0734|consensus 98.8 1.9E-09 4.1E-14 105.8 1.6 42 2-43 445-486 (752)
12 KOG0731|consensus 98.6 1.9E-08 4.1E-13 102.7 4.2 42 2-43 456-497 (774)
13 KOG0651|consensus 98.6 6.1E-09 1.3E-13 96.7 -0.2 40 1-40 276-315 (388)
14 KOG0733|consensus 98.6 3.9E-08 8.4E-13 97.9 4.0 41 2-42 653-693 (802)
15 COG0465 HflB ATP-dependent Zn 98.6 3E-08 6.4E-13 99.2 3.2 42 2-43 294-335 (596)
16 PTZ00454 26S protease regulato 98.5 5.9E-08 1.3E-12 93.4 4.3 43 1-43 289-331 (398)
17 KOG0652|consensus 98.5 4.4E-08 9.5E-13 89.6 2.3 41 2-42 316-356 (424)
18 PLN00020 ribulose bisphosphate 98.5 8.8E-08 1.9E-12 91.3 3.7 54 1-56 273-330 (413)
19 CHL00206 ycf2 Ycf2; Provisiona 98.5 9.8E-08 2.1E-12 104.6 4.3 39 1-39 1777-1815(2281)
20 CHL00195 ycf46 Ycf46; Provisio 98.4 1.3E-07 2.7E-12 93.3 3.2 43 1-43 365-407 (489)
21 PRK10733 hflB ATP-dependent me 98.4 2E-07 4.3E-12 94.7 3.2 43 1-43 295-337 (644)
22 COG0464 SpoVK ATPases of the A 98.4 2.7E-07 5.8E-12 90.5 3.9 43 1-43 383-425 (494)
23 PTZ00361 26 proteosome regulat 98.4 1.7E-07 3.8E-12 91.2 2.5 43 1-43 327-369 (438)
24 TIGR01243 CDC48 AAA family ATP 98.3 2.7E-07 5.9E-12 94.8 3.7 43 1-43 595-637 (733)
25 KOG0735|consensus 98.3 3.8E-07 8.1E-12 92.3 3.5 41 2-42 809-849 (952)
26 TIGR01241 FtsH_fam ATP-depende 98.3 4.3E-07 9.2E-12 89.4 3.4 43 1-43 198-240 (495)
27 PRK03992 proteasome-activating 98.3 5.2E-07 1.1E-11 86.4 3.5 43 1-43 275-317 (389)
28 KOG0736|consensus 98.2 6.7E-07 1.4E-11 91.1 3.0 29 2-30 817-845 (953)
29 KOG0733|consensus 98.2 5.8E-07 1.3E-11 89.7 2.1 42 2-43 335-376 (802)
30 CHL00176 ftsH cell division pr 98.1 1.5E-06 3.3E-11 88.2 3.6 43 1-43 326-368 (638)
31 KOG0741|consensus 98.1 2.9E-07 6.3E-12 90.7 -2.1 41 2-42 375-415 (744)
32 TIGR01242 26Sp45 26S proteasom 98.0 4.9E-06 1.1E-10 78.7 3.5 43 1-43 266-308 (364)
33 KOG0732|consensus 98.0 7.8E-06 1.7E-10 86.1 5.2 56 2-57 412-473 (1080)
34 TIGR01243 CDC48 AAA family ATP 97.2 0.00032 7E-09 72.3 4.3 42 2-43 320-361 (733)
35 KOG0737|consensus 96.9 0.00031 6.7E-09 66.8 1.3 42 2-45 237-278 (386)
36 KOG0730|consensus 96.6 0.0013 2.9E-08 66.5 3.3 41 2-43 326-366 (693)
37 KOG0738|consensus 96.5 0.00084 1.8E-08 64.6 0.6 40 2-43 358-397 (491)
38 KOG0739|consensus 95.9 0.0038 8.3E-08 58.6 1.5 41 2-44 275-315 (439)
39 KOG0742|consensus 95.3 0.0097 2.1E-07 58.0 2.0 40 1-42 490-529 (630)
40 KOG0740|consensus 94.7 0.014 3.1E-07 56.8 1.4 41 2-44 296-336 (428)
41 COG1223 Predicted ATPase (AAA+ 94.5 0.021 4.5E-07 52.8 1.9 55 1-57 259-318 (368)
42 COG0464 SpoVK ATPases of the A 92.0 0.13 2.8E-06 50.5 3.3 40 2-41 124-163 (494)
43 TIGR00763 lon ATP-dependent pr 83.5 0.84 1.8E-05 47.8 2.8 38 1-41 468-505 (775)
44 TIGR00635 ruvB Holliday juncti 78.4 2.6 5.6E-05 38.4 3.8 39 2-42 135-173 (305)
45 PRK00080 ruvB Holliday junctio 77.3 2.4 5.2E-05 39.4 3.4 40 1-42 155-194 (328)
46 TIGR02640 gas_vesic_GvpN gas v 73.0 5.1 0.00011 36.2 4.3 53 2-57 157-215 (262)
47 PRK11034 clpA ATP-dependent Cl 72.4 2.1 4.5E-05 44.9 1.8 37 2-41 321-362 (758)
48 KOG0744|consensus 71.0 2 4.3E-05 41.1 1.1 38 2-41 303-340 (423)
49 CHL00181 cbbX CbbX; Provisiona 61.2 5.8 0.00013 36.6 2.2 33 9-43 179-211 (287)
50 TIGR02881 spore_V_K stage V sp 58.9 9.4 0.0002 34.2 3.1 34 8-43 160-193 (261)
51 TIGR02639 ClpA ATP-dependent C 58.3 4.5 9.7E-05 42.1 1.0 36 2-40 317-357 (731)
52 PF03633 Glyco_hydro_65C: Glyc 57.8 16 0.00035 24.8 3.5 38 143-182 12-49 (54)
53 TIGR02880 cbbX_cfxQ probable R 56.8 7.9 0.00017 35.5 2.3 33 9-43 178-210 (284)
54 PRK10865 protein disaggregatio 51.7 10 0.00022 40.4 2.4 37 2-41 313-354 (857)
55 TIGR03345 VI_ClpV1 type VI sec 50.3 8.6 0.00019 40.9 1.6 34 2-38 322-360 (852)
56 KOG2422|consensus 48.7 5.4 0.00012 40.6 -0.2 20 177-196 275-294 (665)
57 TIGR02902 spore_lonB ATP-depen 39.5 25 0.00054 35.3 2.9 38 2-42 240-277 (531)
58 PF08883 DOPA_dioxygen: Dopa 4 39.3 27 0.00058 27.7 2.4 69 20-111 2-70 (104)
59 PHA02544 44 clamp loader, smal 37.4 22 0.00047 32.4 2.0 37 1-40 136-172 (316)
60 PRK07940 DNA polymerase III su 37.0 35 0.00075 33.1 3.3 37 1-40 152-188 (394)
61 TIGR03346 chaperone_ClpB ATP-d 33.2 23 0.00049 37.7 1.5 36 2-40 308-348 (852)
62 PRK10787 DNA-binding ATP-depen 29.8 46 0.001 35.2 3.1 38 1-42 470-507 (784)
63 TIGR00362 DnaA chromosomal rep 28.3 60 0.0013 31.0 3.4 34 8-43 248-283 (405)
64 KOG0735|consensus 26.3 48 0.001 35.1 2.4 42 2-43 547-588 (952)
65 PRK11331 5-methylcytosine-spec 23.6 1E+02 0.0023 30.7 4.1 22 2-26 331-356 (459)
66 CHL00081 chlI Mg-protoporyphyr 22.8 82 0.0018 30.1 3.1 51 2-54 193-245 (350)
67 COG5005 Mu-like prophage prote 22.7 57 0.0012 27.0 1.7 27 221-249 109-135 (140)
68 PF03487 IL13: Interleukin-13; 22.6 47 0.001 22.0 1.0 22 173-194 8-37 (43)
69 cd07202 cPLA2_Grp-IVC Group IV 22.5 59 0.0013 32.1 2.1 24 11-34 298-322 (430)
70 TIGR01650 PD_CobS cobaltochela 21.3 1.5E+02 0.0032 28.2 4.5 48 8-57 202-251 (327)
71 COG0714 MoxR-like ATPases [Gen 20.8 85 0.0018 29.1 2.8 36 5-42 168-204 (329)
72 PRK12422 chromosomal replicati 20.6 86 0.0019 30.9 2.9 40 1-42 240-285 (445)
73 PRK06964 DNA polymerase III su 20.2 74 0.0016 30.3 2.3 37 1-40 167-203 (342)
No 1
>PF08740 BCS1_N: BCS1 N terminal; InterPro: IPR014851 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. This domain is found at the N terminus of the mitochondrial BSC1 subfamily, belonging to the AAA ATPase family. At2g21640 and BCS1 are both highly stress responsive genes which encode mitochondrial proteins. The promoter of BCS1 was not responsive to H2O2 or rotenone, but highly responsive to salicylic acid (SA). The SA dependent pathway represented by BCS1 is one of at least three distinctive pathways to regulate mitochondrial stress response at a transcriptional level []. The BCS1 product is a mitochondrial protein required for the assembly of respiratory complex III []. BCS1, a component of the inner membrane of mitochondria, belongs to the group of proteins with internal, noncleavable import signals. It has a transmembrane domain (amino acid residues 51 to 68), a presequence type helix (residues 69 to 83), and an import auxiliary region (residues 84 to 126) [].
Probab=100.00 E-value=2.7e-39 Score=277.88 Aligned_cols=156 Identities=38% Similarity=0.656 Sum_probs=137.9
Q ss_pred hHHHHHHHhhheEEEEEEeCCChhHHHHHHHHhhcCC-CceeEEEEEeeeeec---------------CCCccccceeEE
Q psy1374 74 KKKTKKKNRRHYMITLEIPCRDKSYHWLLHWITVRGA-KKTQHLSVETSFEKF---------------DTGYVKTKYDFI 137 (263)
Q Consensus 74 ~~~~~~~~~~~~~~tv~I~~~D~~Y~~vm~Wls~q~~-~~sr~l~v~t~~~~~---------------~~g~~~~~~~~~ 137 (263)
.+.+++++.++|++||||+++|++|+|||.||++|+. ..+|++.|.|..... ..+...+++.|+
T Consensus 14 ~~~~~~~~~~~f~~sv~I~~~D~~Y~~lm~Wls~q~~~~~~r~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (187)
T PF08740_consen 14 YSSLWNLFRRRFTSSVEIPSDDEAYDWLMRWLSSQPFSKRSRHLSATTRSNSSWDDDESDDEDSWDTNTSDDKKKPIRFT 93 (187)
T ss_pred HHHHHHHHHHhEEEEEEECCCCHHHHHHHHHHhhCCcccccceeEEEeecccccccccccccchhccccccCCcCCeEEE
Confidence 3678999999999999999999999999999999995 558999999864321 112246899999
Q ss_pred cCCCeeEEEECCEEEEEEEeccCccccCCCCCcceEEEEEEecCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCC--e
Q psy1374 138 PSIGTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSE--W 215 (263)
Q Consensus 138 P~~G~h~F~ykG~~~~~~R~~~~~~~~~~~g~~~E~ltIs~lg~s~~~l~~lL~ear~~~~~~~~~~t~Iy~~~~~~--W 215 (263)
|++|+|+|||+|+||+|+|.++....+...|.+.|+|+|+|||+|++||++||+||++.|.++++++|+||++.+.+ |
T Consensus 94 P~~G~h~F~y~G~~~~~~R~~~~~~~~~~~~~~~e~l~l~~lg~s~~~l~~ll~ear~~~~~~~~~~t~Iy~~~~~~~~W 173 (187)
T PF08740_consen 94 PSPGTHWFWYKGRWFWFSRQRESNSYNSWTGAPDETLTLSCLGRSPKPLKDLLEEAREYYLKKQKGKTTIYRADGSEYRW 173 (187)
T ss_pred eCCCCEEEEECCEEEEEEEEeccccccccCCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHhcCCcEEEEeCCCCCCCC
Confidence 99999999999999999999965555444567899999999999999999999999999999999999999999887 9
Q ss_pred eeCCCCCCCCCCCee
Q psy1374 216 RPFGHPKRRRPLNSV 230 (263)
Q Consensus 216 ~~~g~~r~~RplsTV 230 (263)
++. .+||+||||||
T Consensus 174 ~~~-~~r~~RplsTV 187 (187)
T PF08740_consen 174 RRV-ASRPKRPLSTV 187 (187)
T ss_pred cCC-CCcCCCCCCCC
Confidence 996 89999999998
No 2
>KOG0743|consensus
Probab=99.76 E-value=1.2e-19 Score=173.39 Aligned_cols=169 Identities=30% Similarity=0.508 Sum_probs=140.4
Q ss_pred CChhHHHHHHHHhhcCCCc----eeEEEEEee---eeecCCCccccceeEEcCCCeeEEEECCEEEEEEEeccCccccCC
Q psy1374 94 RDKSYHWLLHWITVRGAKK----TQHLSVETS---FEKFDTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDIQ 166 (263)
Q Consensus 94 ~D~~Y~~vm~Wls~q~~~~----sr~l~v~t~---~~~~~~g~~~~~~~~~P~~G~h~F~ykG~~~~~~R~~~~~~~~~~ 166 (263)
..++|..+-.+++...... +.+.++++. ....+++.....+..+|..|.|+++|++.|+.+.|.++.+...-.
T Consensus 60 ~n~~~~aie~yl~~k~~~~~~rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~~~~~~~r~~~L~ 139 (457)
T KOG0743|consen 60 RNQLYVAIEVYLSSKSSAIAKRLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFVEREREKRYFELT 139 (457)
T ss_pred HHHHHHHHHHhhhccchhhhhhhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcccccccCCcceEEEEE
Confidence 3456666666666444322 233344444 334567788899999999999999999999999887766543322
Q ss_pred -CCCcceEEEEEEecCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeeCCCCCCCCCCCeeeeCccchHHHHHHHH
Q psy1374 167 -QGIPWETVTLTAFGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILADIR 245 (263)
Q Consensus 167 -~g~~~E~ltIs~lg~s~~~l~~lL~ear~~~~~~~~~~t~Iy~~~~~~W~~~g~~r~~RplsTViLd~~~ke~ll~Di~ 245 (263)
.+.++|.|+.|.++......+++++++++..+-...+.+++|.+.++.|+.++-.+| |+++||+||++.|+.|++|+.
T Consensus 140 f~k~~~e~V~~syl~~v~~~~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~Hp-stF~TlaMd~~~K~~I~~Dl~ 218 (457)
T KOG0743|consen 140 FHKKPRELVTLSYLPYVVSKAKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHP-STFETLAMDPDLKERIIDDLD 218 (457)
T ss_pred ecCccHHHhHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCC-CCccccccChhHHHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999987777 999999999999999999999
Q ss_pred hhhCChhhhhhcCCCCCC
Q psy1374 246 QFVADPAWYLDRGKQNRN 263 (263)
Q Consensus 246 eFL~s~~WY~~RGIPYRR 263 (263)
+|++.++||..+|+||||
T Consensus 219 ~F~k~k~~YkrvGkawKR 236 (457)
T KOG0743|consen 219 DFIKGKDFYKRVGKAWKR 236 (457)
T ss_pred HHHhcchHHHhcCcchhc
Confidence 999999999999999998
No 3
>KOG0743|consensus
Probab=99.54 E-value=5.7e-15 Score=141.56 Aligned_cols=91 Identities=20% Similarity=0.340 Sum_probs=80.4
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC---hhhHHHHHHHhhhcchhhhhhhhhhhhhhhhHHH
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD---VDNASKFADQAKKKKNFRRKKKKKTKKKKKKKKT 77 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (263)
|||||+|+||||||||||+|+||++++|+.++.+.|+.+||+- .+++++|...+-+. .++
T Consensus 343 FTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~-----------------~~t 405 (457)
T KOG0743|consen 343 FTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEET-----------------EVT 405 (457)
T ss_pred EecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcC-----------------ccC
Confidence 7999999999999999999999999999999999999999986 47899999866666 589
Q ss_pred HHHHhhheEEEEEEeCCChhHHHHHHHHhhcCC
Q psy1374 78 KKKNRRHYMITLEIPCRDKSYHWLLHWITVRGA 110 (263)
Q Consensus 78 ~~~~~~~~~~tv~I~~~D~~Y~~vm~Wls~q~~ 110 (263)
++-|..+|+..=. +-|.+-.-|..-|.+++.
T Consensus 406 PA~V~e~lm~~~~--dad~~lk~Lv~~l~~~~~ 436 (457)
T KOG0743|consen 406 PAQVAEELMKNKN--DADVALKGLVEALESKKE 436 (457)
T ss_pred HHHHHHHHhhccc--cHHHHHHHHHHHHHhhhh
Confidence 9999999888644 567889999999987774
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.2e-13 Score=127.73 Aligned_cols=43 Identities=35% Similarity=0.463 Sum_probs=41.5
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
||||+||.||||||||||||++|+|++||.+++.+||+.+...
T Consensus 295 ~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk 337 (406)
T COG1222 295 MATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK 337 (406)
T ss_pred EecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh
Confidence 8999999999999999999999999999999999999988875
No 5
>KOG0728|consensus
Probab=99.15 E-value=1.5e-11 Score=111.34 Aligned_cols=57 Identities=32% Similarity=0.432 Sum_probs=49.8
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCChh-----hHHHHHHHhhhc
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVD-----NASKFADQAKKK 57 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~f~~~~~~~ 57 (263)
||||++|.|||||+||||||++|+|+.|+++++.+|++.+..... .-...|+++|.+
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~ga 352 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGA 352 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCC
Confidence 899999999999999999999999999999999999988776542 246677777766
No 6
>KOG0726|consensus
Probab=99.13 E-value=6.7e-12 Score=115.56 Aligned_cols=43 Identities=30% Similarity=0.527 Sum_probs=40.5
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
||||++|.||||||||||||++|+|++||+...+.||..+...
T Consensus 329 mATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~ 371 (440)
T KOG0726|consen 329 MATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR 371 (440)
T ss_pred EecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecc
Confidence 8999999999999999999999999999999999999877654
No 7
>KOG0729|consensus
Probab=99.00 E-value=4.8e-11 Score=108.94 Aligned_cols=42 Identities=36% Similarity=0.531 Sum_probs=38.3
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
||||+|+.|||||+||||+|++|+|++||.+.+.+||+.+..
T Consensus 321 matnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihak 362 (435)
T KOG0729|consen 321 MATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAK 362 (435)
T ss_pred eecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecc
Confidence 899999999999999999999999999999988888765544
No 8
>KOG0727|consensus
Probab=98.97 E-value=1.3e-10 Score=105.49 Aligned_cols=43 Identities=35% Similarity=0.515 Sum_probs=41.1
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
||||+.|.|||||+||||+|++|+|++||..|.+-+|......
T Consensus 299 matnradtldpallrpgrldrkiefplpdrrqkrlvf~titsk 341 (408)
T KOG0727|consen 299 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSK 341 (408)
T ss_pred EecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhc
Confidence 8999999999999999999999999999999999999988764
No 9
>KOG0730|consensus
Probab=98.95 E-value=3.2e-10 Score=113.04 Aligned_cols=42 Identities=29% Similarity=0.476 Sum_probs=40.6
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
|||+||.||+|||||||+|..|+|++||.+++.+||+.+...
T Consensus 576 ATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 576 ATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK 617 (693)
T ss_pred ccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999865
No 10
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.80 E-value=2.7e-09 Score=105.36 Aligned_cols=43 Identities=26% Similarity=0.532 Sum_probs=41.3
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+++.|||||+||||||++|+|++|+.+++.+||++++.+
T Consensus 338 ~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 338 GASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred eccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 5999999999999999999999999999999999999999864
No 11
>KOG0734|consensus
Probab=98.78 E-value=1.9e-09 Score=105.78 Aligned_cols=42 Identities=26% Similarity=0.347 Sum_probs=40.6
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
|||.||.||+||+||||||++|.+++||...+.+|+..|+..
T Consensus 445 ATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 445 ATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK 486 (752)
T ss_pred ccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc
Confidence 799999999999999999999999999999999999999874
No 12
>KOG0731|consensus
Probab=98.64 E-value=1.9e-08 Score=102.69 Aligned_cols=42 Identities=33% Similarity=0.460 Sum_probs=40.6
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+||+||.||+||+||||||++|++++||...+.+||..+...
T Consensus 456 ~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~ 497 (774)
T KOG0731|consen 456 ATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK 497 (774)
T ss_pred ccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc
Confidence 799999999999999999999999999999999999998875
No 13
>KOG0651|consensus
Probab=98.62 E-value=6.1e-09 Score=96.69 Aligned_cols=40 Identities=38% Similarity=0.475 Sum_probs=36.9
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRF 40 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~ 40 (263)
||||+|+.||||||||||+|+++++|+|.+..+..+++..
T Consensus 276 matNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih 315 (388)
T KOG0651|consen 276 MATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIH 315 (388)
T ss_pred EecCCccccchhhcCCccccceeccCCcchhhceeeEeec
Confidence 8999999999999999999999999999998888877543
No 14
>KOG0733|consensus
Probab=98.57 E-value=3.9e-08 Score=97.93 Aligned_cols=41 Identities=32% Similarity=0.579 Sum_probs=40.0
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
|||+||.+|||+|||||+|..+++++|+.+.+.+|++....
T Consensus 653 ATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 653 ATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred ecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhc
Confidence 89999999999999999999999999999999999999887
No 15
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3e-08 Score=99.23 Aligned_cols=42 Identities=33% Similarity=0.494 Sum_probs=39.7
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+||+||.|||||+||||+|++|.+++||...+++|++.+...
T Consensus 294 aTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~ 335 (596)
T COG0465 294 ATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKN 335 (596)
T ss_pred cCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhc
Confidence 799999999999999999999999999999999999977654
No 16
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.54 E-value=5.9e-08 Score=93.38 Aligned_cols=43 Identities=35% Similarity=0.532 Sum_probs=40.9
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.|||||+||||||.+|+|++|+.+++.+||+.++..
T Consensus 289 ~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~ 331 (398)
T PTZ00454 289 MATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK 331 (398)
T ss_pred EecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999988764
No 17
>KOG0652|consensus
Probab=98.51 E-value=4.4e-08 Score=89.57 Aligned_cols=41 Identities=29% Similarity=0.412 Sum_probs=38.9
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
|||+.|.|||||+|.||+|++|+|+.|+++++.+|+..+..
T Consensus 316 ATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsR 356 (424)
T KOG0652|consen 316 ATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSR 356 (424)
T ss_pred ecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhh
Confidence 79999999999999999999999999999999999987764
No 18
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.48 E-value=8.8e-08 Score=91.31 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=43.9
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCChh----hHHHHHHHhhh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVD----NASKFADQAKK 56 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~f~~~~~~ 56 (263)
+|||+|+.|||||+||||+|..+ .+|+.+++.+|++.++..+. ...+.++..|.
T Consensus 273 aTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 273 VTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVSREDVVKLVDTFPG 330 (413)
T ss_pred EeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCCHHHHHHHHHcCCC
Confidence 48999999999999999999965 58999999999999998643 33444444444
No 19
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.48 E-value=9.8e-08 Score=104.62 Aligned_cols=39 Identities=23% Similarity=0.214 Sum_probs=36.4
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHH
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKR 39 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~ 39 (263)
.|||+||.|||||+||||+|++|+++.|+..+++++|..
T Consensus 1777 AATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~I 1815 (2281)
T CHL00206 1777 ASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFT 1815 (2281)
T ss_pred EeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHH
Confidence 489999999999999999999999999999999988764
No 20
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.42 E-value=1.3e-07 Score=93.33 Aligned_cols=43 Identities=21% Similarity=0.372 Sum_probs=40.8
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.|||||+||||||..|+|++|+.+++.+||+.++..
T Consensus 365 aTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~ 407 (489)
T CHL00195 365 ATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQK 407 (489)
T ss_pred EecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhh
Confidence 5899999999999999999999999999999999999998753
No 21
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.37 E-value=2e-07 Score=94.73 Aligned_cols=43 Identities=35% Similarity=0.531 Sum_probs=40.9
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.|||||+||||+|++|+|++|+.+++.+|++.++..
T Consensus 295 aaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 295 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred EecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 4899999999999999999999999999999999999999864
No 22
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.7e-07 Score=90.48 Aligned_cols=43 Identities=33% Similarity=0.486 Sum_probs=41.2
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
.|||+|+.||+|++||||+|..|+|++||.+++.+||..+...
T Consensus 383 ~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 383 AATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred ecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 3899999999999999999999999999999999999999983
No 23
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.36 E-value=1.7e-07 Score=91.17 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=40.8
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
||||+++.||+||+||||||.+|+|++|+.+++.+||..+...
T Consensus 327 ~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 327 MATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSK 369 (438)
T ss_pred EecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999988754
No 24
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.35 E-value=2.7e-07 Score=94.83 Aligned_cols=43 Identities=30% Similarity=0.430 Sum_probs=40.2
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.|||||+||||+|..|+|++|+.+++.+||+.+...
T Consensus 595 ~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~ 637 (733)
T TIGR01243 595 AATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS 637 (733)
T ss_pred EeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999877653
No 25
>KOG0735|consensus
Probab=98.31 E-value=3.8e-07 Score=92.30 Aligned_cols=41 Identities=27% Similarity=0.456 Sum_probs=38.8
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
||-|||.||||||||||+|+.|+.++|++..+.+|+.....
T Consensus 809 aTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~ 849 (952)
T KOG0735|consen 809 ATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSN 849 (952)
T ss_pred ecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhh
Confidence 79999999999999999999999999999999999987654
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.29 E-value=4.3e-07 Score=89.38 Aligned_cols=43 Identities=30% Similarity=0.474 Sum_probs=40.6
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
.|||+|+.|||||+||||||.+|+|++|+.+++.+|++.++..
T Consensus 198 ~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~ 240 (495)
T TIGR01241 198 AATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKN 240 (495)
T ss_pred EecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhc
Confidence 3899999999999999999999999999999999999998754
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.27 E-value=5.2e-07 Score=86.43 Aligned_cols=43 Identities=28% Similarity=0.408 Sum_probs=40.7
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+++.||+||+||||+|..|+|++|+.+++.+||+.+...
T Consensus 275 ~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~ 317 (389)
T PRK03992 275 AATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRK 317 (389)
T ss_pred EecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhcc
Confidence 4899999999999999999999999999999999999988764
No 28
>KOG0736|consensus
Probab=98.22 E-value=6.7e-07 Score=91.12 Aligned_cols=29 Identities=45% Similarity=0.722 Sum_probs=27.5
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCH
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSR 30 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~ 30 (263)
||||||-||||||||||||..+++|.++.
T Consensus 817 ATNRPDLLDpALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 817 ATNRPDLLDPALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred cCCCccccChhhcCCCccceeEEecCCcc
Confidence 89999999999999999999999999863
No 29
>KOG0733|consensus
Probab=98.20 E-value=5.8e-07 Score=89.74 Aligned_cols=42 Identities=31% Similarity=0.427 Sum_probs=40.4
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
|||+||.|||||=|+||||+.|.++-|++.++.+|++.++..
T Consensus 335 ATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~ 376 (802)
T KOG0733|consen 335 ATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRG 376 (802)
T ss_pred cCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999998863
No 30
>CHL00176 ftsH cell division protein; Validated
Probab=98.13 E-value=1.5e-06 Score=88.24 Aligned_cols=43 Identities=30% Similarity=0.444 Sum_probs=40.8
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
.|||+|+.||+||+||||+|.+|.|++|+.+++.+|++.++..
T Consensus 326 aaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~ 368 (638)
T CHL00176 326 AATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARN 368 (638)
T ss_pred EecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhh
Confidence 3899999999999999999999999999999999999999864
No 31
>KOG0741|consensus
Probab=98.11 E-value=2.9e-07 Score=90.66 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=38.0
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
.|||+|.||.|||||||+.+++++++||++.+.+|++.+..
T Consensus 375 MTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~ 415 (744)
T KOG0741|consen 375 MTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTK 415 (744)
T ss_pred ccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhh
Confidence 49999999999999999999999999999999999976654
No 32
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.98 E-value=4.9e-06 Score=78.67 Aligned_cols=43 Identities=30% Similarity=0.350 Sum_probs=40.4
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+++.||+||+||||+|..|+|++|+.+++.+||..+...
T Consensus 266 ~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~ 308 (364)
T TIGR01242 266 AATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRK 308 (364)
T ss_pred EecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999988754
No 33
>KOG0732|consensus
Probab=97.97 E-value=7.8e-06 Score=86.10 Aligned_cols=56 Identities=21% Similarity=0.272 Sum_probs=46.4
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC------hhhHHHHHHHhhhc
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD------VDNASKFADQAKKK 57 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~f~~~~~~~ 57 (263)
|||+|+.+||||.||||||+.++|++|+.+++.+|+...-.. ..+.+.||+.-++.
T Consensus 412 ATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy 473 (1080)
T KOG0732|consen 412 ATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGY 473 (1080)
T ss_pred ccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhcccc
Confidence 899999999999999999999999999999999999877653 24555555555444
No 34
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.19 E-value=0.00032 Score=72.34 Aligned_cols=42 Identities=31% Similarity=0.434 Sum_probs=39.5
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
|||+|+.||+||.||||+|..|+|++|+.+++.+|+..+...
T Consensus 320 atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~ 361 (733)
T TIGR01243 320 ATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN 361 (733)
T ss_pred ecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999977653
No 35
>KOG0737|consensus
Probab=96.95 E-value=0.00031 Score=66.84 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=40.1
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCChh
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVD 45 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~~~ 45 (263)
|||+|..||.|.|| |+-..+++++|+..++++|++.++..+.
T Consensus 237 ATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~ 278 (386)
T KOG0737|consen 237 ATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEK 278 (386)
T ss_pred CCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccc
Confidence 89999999999999 9999999999999999999999998753
No 36
>KOG0730|consensus
Probab=96.65 E-value=0.0013 Score=66.51 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=38.9
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
|||+|+.|||||=| ||+|..|+++.|+..++.+|++.+...
T Consensus 326 atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~ 366 (693)
T KOG0730|consen 326 ATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKK 366 (693)
T ss_pred ecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHh
Confidence 79999999999999 999999999999999999999988864
No 37
>KOG0738|consensus
Probab=96.49 E-value=0.00084 Score=64.62 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=38.8
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
|||.|=.||.||.| |+...|+|+||+.+.+..|++..++.
T Consensus 358 ATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~ 397 (491)
T KOG0738|consen 358 ATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRS 397 (491)
T ss_pred ccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhcc
Confidence 89999999999999 99999999999999999999999986
No 38
>KOG0739|consensus
Probab=95.85 E-value=0.0038 Score=58.57 Aligned_cols=41 Identities=29% Similarity=0.416 Sum_probs=39.4
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCCh
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDV 44 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~~ 44 (263)
|||-|=.||.|+-| ||+..|+|++|+..++..||+.++|+.
T Consensus 275 ATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~t 315 (439)
T KOG0739|consen 275 ATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDT 315 (439)
T ss_pred cCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCC
Confidence 79999999999999 999999999999999999999999973
No 39
>KOG0742|consensus
Probab=95.26 E-value=0.0097 Score=57.97 Aligned_cols=40 Identities=15% Similarity=0.146 Sum_probs=37.2
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
++||+|+.||.|+-- |||-.|+|++|.++.+..|+..|+.
T Consensus 490 lAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742|consen 490 LATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred eccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHH
Confidence 589999999999976 9999999999999999999998874
No 40
>KOG0740|consensus
Probab=94.67 E-value=0.014 Score=56.82 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=38.8
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCCh
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDV 44 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~~ 44 (263)
|||+|..||.|++| |+-..++|++||.+++..++.+++...
T Consensus 296 aTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 296 ATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred cCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhC
Confidence 89999999999999 999999999999999999999988753
No 41
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.45 E-value=0.021 Score=52.85 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=43.5
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC-----hhhHHHHHHHhhhc
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD-----VDNASKFADQAKKK 57 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~f~~~~~~~ 57 (263)
.|||+|+.||||+-- ||.-.|+|.+|+.+.+.+|++.|... +..-..|+++-..+
T Consensus 259 aaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGM 318 (368)
T ss_pred eecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCC
Confidence 379999999999754 99999999999999999999988753 12245555555444
No 42
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=92.02 E-value=0.13 Score=50.52 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=36.2
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
.||.++.+|+|+.||||+|..+++..|+.....+++....
T Consensus 124 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~ 163 (494)
T COG0464 124 ATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHT 163 (494)
T ss_pred ecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHH
Confidence 5899999999999999999999999999988877776554
No 43
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=83.51 E-value=0.84 Score=47.79 Aligned_cols=38 Identities=8% Similarity=0.211 Sum_probs=34.8
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
+|||.++.||+||++ |++ .|+|+.++.+...+|+..++
T Consensus 468 ~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 468 ATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 699999999999998 997 58999999999999998876
No 44
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=78.38 E-value=2.6 Score=38.37 Aligned_cols=39 Identities=18% Similarity=0.229 Sum_probs=35.4
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+||++..|+++|.. |+...+.|+.++.+++.+++....+
T Consensus 135 ~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 135 ATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred ecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHH
Confidence 68999999999987 9999999999999999999987765
No 45
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=77.27 E-value=2.4 Score=39.43 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=36.1
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+|||++..|+++|.. |++..+.|+.++.+++.+++.+...
T Consensus 155 ~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~ 194 (328)
T PRK00080 155 GATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSAR 194 (328)
T ss_pred eecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHH
Confidence 378999999999876 9999999999999999999998865
No 46
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=73.05 E-value=5.1 Score=36.20 Aligned_cols=53 Identities=9% Similarity=0.167 Sum_probs=40.4
Q ss_pred CCCCCC-----CccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC-hhhHHHHHHHhhhc
Q psy1374 2 STQALT-----ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD-VDNASKFADQAKKK 57 (263)
Q Consensus 2 tTN~~~-----~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~f~~~~~~~ 57 (263)
|+|..+ .+++||++ |+ ..+.+++|+.+.-.+|+...++- ++.++.+++-+-++
T Consensus 157 TsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~~~~~~~~iv~~~~~~ 215 (262)
T TIGR02640 157 TSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDVAEDSAATIVRLVREF 215 (262)
T ss_pred eeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence 677653 67899998 98 78999999999999999988753 45555555555554
No 47
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=72.45 E-value=2.1 Score=44.94 Aligned_cols=37 Identities=30% Similarity=0.121 Sum_probs=32.1
Q ss_pred CCCCCC-----CccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 2 STQALT-----ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 2 tTN~~~-----~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
|||.+| .+|+||.| ||+ .|.++.|+.+++.+|++.+.
T Consensus 321 ATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 321 STTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_pred cCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 677766 58999999 997 79999999999999998653
No 48
>KOG0744|consensus
Probab=70.96 E-value=2 Score=41.15 Aligned_cols=38 Identities=21% Similarity=0.324 Sum_probs=35.2
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
|.|-.+.||.|++- |-|...++|+|+.+++.+|++-..
T Consensus 303 TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilksci 340 (423)
T KOG0744|consen 303 TSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCI 340 (423)
T ss_pred ccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHH
Confidence 78899999999997 999999999999999999998665
No 49
>CHL00181 cbbX CbbX; Provisional
Probab=61.20 E-value=5.8 Score=36.58 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=30.0
Q ss_pred ccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 9 LDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 9 lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
++|+|.+ |++..|+|+.++.+++.+|+.+++..
T Consensus 179 ~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~ 211 (287)
T CHL00181 179 SNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEE 211 (287)
T ss_pred cCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHH
Confidence 3599998 99999999999999999999999864
No 50
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=58.94 E-value=9.4 Score=34.22 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=30.3
Q ss_pred CccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 8 ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 8 ~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
.++|+|.+ |++..|+|+.++.+++.+|+.+++..
T Consensus 160 ~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~ 193 (261)
T TIGR02881 160 SLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKE 193 (261)
T ss_pred hcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHH
Confidence 47889987 99999999999999999999988753
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=58.28 E-value=4.5 Score=42.13 Aligned_cols=36 Identities=31% Similarity=0.203 Sum_probs=30.2
Q ss_pred CCCCCC-----CccccccCCCccceEEEeCCCCHHHHHHHHHHh
Q psy1374 2 STQALT-----ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRF 40 (263)
Q Consensus 2 tTN~~~-----~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~ 40 (263)
|||..| .+|+||.| ||+ .|+|+.|+.+++.+|++..
T Consensus 317 aTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~ 357 (731)
T TIGR02639 317 STTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGL 357 (731)
T ss_pred ecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHH
Confidence 566543 58999999 998 6999999999999999843
No 52
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=57.77 E-value=16 Score=24.78 Aligned_cols=38 Identities=26% Similarity=0.659 Sum_probs=22.9
Q ss_pred eEEEECCEEEEEEEeccCccccCCCCCcceEEEEEEecCC
Q psy1374 143 HLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRD 182 (263)
Q Consensus 143 h~F~ykG~~~~~~R~~~~~~~~~~~g~~~E~ltIs~lg~s 182 (263)
.-|.|+|+++.|+-..+.-+.....|. +.|+|.+.|..
T Consensus 12 F~~~~rg~~l~v~i~~~~v~v~~~~g~--~~l~i~v~g~~ 49 (54)
T PF03633_consen 12 FRLRYRGHWLEVEITHEKVTVTLLSGD--APLTIKVYGEE 49 (54)
T ss_dssp EEEEETTEEEEEEEETTEEEEEEEESS----EEEEETT--
T ss_pred EEEEECCEEEEEEEECCEEEEEEccCC--ccEEEEECCCc
Confidence 559999999999877654333222222 47888877754
No 53
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=56.84 E-value=7.9 Score=35.51 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=30.4
Q ss_pred ccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 9 LDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 9 lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
++|+|.+ |++.+|+|+.++.+.+.+|+.+++..
T Consensus 178 ~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~ 210 (284)
T TIGR02880 178 SNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKE 210 (284)
T ss_pred hCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHH
Confidence 4899999 99999999999999999999998865
No 54
>PRK10865 protein disaggregation chaperone; Provisional
Probab=51.68 E-value=10 Score=40.41 Aligned_cols=37 Identities=22% Similarity=0.180 Sum_probs=32.1
Q ss_pred CCCCCCC-----ccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 2 STQALTI-----LDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 2 tTN~~~~-----lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
||+..|. +|+||.| ||+ .|.++.|+.++...|++.+.
T Consensus 313 aTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 313 ATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLK 354 (857)
T ss_pred cCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHh
Confidence 7888874 8999999 998 59999999999999887654
No 55
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=50.26 E-value=8.6 Score=40.93 Aligned_cols=34 Identities=24% Similarity=0.183 Sum_probs=28.0
Q ss_pred CCCCCC-----CccccccCCCccceEEEeCCCCHHHHHHHHH
Q psy1374 2 STQALT-----ILDPALVRPGRVDLKEYIGFCSRHQLEQMYK 38 (263)
Q Consensus 2 tTN~~~-----~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~ 38 (263)
||+..| .+||||.| ||. .|.|+.|+.++...|++
T Consensus 322 aTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~ 360 (852)
T TIGR03345 322 ATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLR 360 (852)
T ss_pred ecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHH
Confidence 555544 49999999 996 79999999999999943
No 56
>KOG2422|consensus
Probab=48.67 E-value=5.4 Score=40.60 Aligned_cols=20 Identities=10% Similarity=-0.032 Sum_probs=9.8
Q ss_pred EEecCChHHHHHHHHHHHHH
Q psy1374 177 TAFGRDRSLFFNILEEARTL 196 (263)
Q Consensus 177 s~lg~s~~~l~~lL~ear~~ 196 (263)
..|..++-=|..||+-|-.+
T Consensus 275 ~lL~ssPYHvdsLLqva~~~ 294 (665)
T KOG2422|consen 275 ILLISSPYHVDSLLQVADIF 294 (665)
T ss_pred eeeccCCcchhHHHHHHHHH
Confidence 33444455555555555433
No 57
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=39.54 E-value=25 Score=35.31 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=32.6
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
|||.|+.|+|||.. |+. .|.|+..+.+++.+|++++..
T Consensus 240 Tt~~p~~L~paLrs--R~~-~I~f~pL~~eei~~Il~~~a~ 277 (531)
T TIGR02902 240 TTRNPEEIPPALRS--RCV-EIFFRPLLDEEIKEIAKNAAE 277 (531)
T ss_pred ecCCcccCChHHhh--hhh-eeeCCCCCHHHHHHHHHHHHH
Confidence 68899999999997 774 678888888999999998775
No 58
>PF08883 DOPA_dioxygen: Dopa 4,5-dioxygenase family; InterPro: IPR014980 This family of proteins is related to P87064 from SWISSPROT a DOPA 4,5-dioxygenase that is involved in synthesis of betalain. DOPA-dioxygenase is the key enzyme involved in betalain biosynthesis. It converts 3,4-dihydroxyphenylalanine to betalamic acid, a yellow chromophore. ; PDB: 2NYH_A 2P8I_C.
Probab=39.34 E-value=27 Score=27.75 Aligned_cols=69 Identities=13% Similarity=0.249 Sum_probs=38.4
Q ss_pred ceEEEeCCCCHHHHHHHHHHhcCChhhHHHHHHHhhhcchhhhhhhhhhhhhhhhHHHHHHHhhheEEEEEEeCCChhHH
Q psy1374 20 DLKEYIGFCSRHQLEQMYKRFYQDVDNASKFADQAKKKKNFRRKKKKKTKKKKKKKKTKKKNRRHYMITLEIPCRDKSYH 99 (263)
Q Consensus 20 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~I~~~D~~Y~ 99 (263)
|.||+|+..+.+.+.+|-. ..+++|.+.++-. .+-...+--+-+-+-+|.-..+.|.
T Consensus 2 HaHvYfd~~~~~~A~~Lre------~i~~~f~~~~~~g-----------------~~~~~pvGPHp~~~~ev~f~~~~f~ 58 (104)
T PF08883_consen 2 HAHVYFDAAEREFARALRE------RIREEFPDELRVG-----------------RFHEKPVGPHPMWSFEVDFPPEQFA 58 (104)
T ss_dssp EEEEEE-GGGHHHHHHHHH------HHHHHTTTTSEE--------------------BSS--TT-SSEEEEEEE-HHHHH
T ss_pred eEEEEcCHHHHHHHHHHHH------HHHHHhhcceeEe-----------------eccccCCCCccCceEEEEcCHHHHH
Confidence 6789997666666665544 2334444321111 1122334446677777777899999
Q ss_pred HHHHHHhhcCCC
Q psy1374 100 WLLHWITVRGAK 111 (263)
Q Consensus 100 ~vm~Wls~q~~~ 111 (263)
.++.||..+...
T Consensus 59 ~~v~Wl~~nrg~ 70 (104)
T PF08883_consen 59 EVVPWLMLNRGG 70 (104)
T ss_dssp HHHHHHHHH-TT
T ss_pred HHHHHHHHhCCC
Confidence 999999987754
No 59
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=37.40 E-value=22 Score=32.40 Aligned_cols=37 Identities=14% Similarity=0.141 Sum_probs=30.3
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRF 40 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~ 40 (263)
+|||.++.|+++|.. |+. .+.|+.|+.+++.+++..+
T Consensus 136 lt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 136 ITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred EEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 478999999999987 774 6899999998887776543
No 60
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=36.95 E-value=35 Score=33.09 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=31.1
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRF 40 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~ 40 (263)
++||.++.|+|++.. |. ..|.|+.|+.+++.+.+..-
T Consensus 152 L~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 152 LCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred EEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHHh
Confidence 467779999999987 65 69999999999999888643
No 61
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=33.16 E-value=23 Score=37.72 Aligned_cols=36 Identities=17% Similarity=0.129 Sum_probs=30.3
Q ss_pred CCCCCC-----CccccccCCCccceEEEeCCCCHHHHHHHHHHh
Q psy1374 2 STQALT-----ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRF 40 (263)
Q Consensus 2 tTN~~~-----~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~ 40 (263)
|||..+ .+|+||.| ||.. |.++.|+.++...|++.+
T Consensus 308 aTt~~e~r~~~~~d~al~r--Rf~~-i~v~~p~~~~~~~iL~~~ 348 (852)
T TIGR03346 308 ATTLDEYRKYIEKDAALER--RFQP-VFVDEPTVEDTISILRGL 348 (852)
T ss_pred eCcHHHHHHHhhcCHHHHh--cCCE-EEeCCCCHHHHHHHHHHH
Confidence 566664 48999999 9974 899999999999999865
No 62
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=29.80 E-value=46 Score=35.21 Aligned_cols=38 Identities=11% Similarity=0.227 Sum_probs=31.9
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+|||..+ |+|||+- |+++ |.|...+.+...+|.++++-
T Consensus 470 ~TaN~~~-i~~aLl~--R~~i-i~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 470 ATSNSMN-IPAPLLD--RMEV-IRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EcCCCCC-CCHHHhc--ceee-eecCCCCHHHHHHHHHHhhh
Confidence 4888874 9999996 9975 77777788999999998884
No 63
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=28.26 E-value=60 Score=31.03 Aligned_cols=34 Identities=15% Similarity=0.036 Sum_probs=28.0
Q ss_pred CccccccCCCccc--eEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 8 ILDPALVRPGRVD--LKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 8 ~lD~AliRpGR~d--~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
.||+.|.. |+. ..|.|+.|+.+++.+|+......
T Consensus 248 ~l~~~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~ 283 (405)
T TIGR00362 248 GLEERLRS--RFEWGLVVDIEPPDLETRLAILQKKAEE 283 (405)
T ss_pred hhhhhhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 35677774 887 58999999999999999988753
No 64
>KOG0735|consensus
Probab=26.32 E-value=48 Score=35.14 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=37.9
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
|-|..+.|.|-|.-|++|+.++.++.|+..++.+|+..++..
T Consensus 547 t~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 547 TGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSK 588 (952)
T ss_pred echhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHh
Confidence 345667899999999999999999999999999999999875
No 65
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=23.63 E-value=1e+02 Score=30.66 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=17.6
Q ss_pred CCCCCC----CccccccCCCccceEEEeC
Q psy1374 2 STQALT----ILDPALVRPGRVDLKEYIG 26 (263)
Q Consensus 2 tTN~~~----~lD~AliRpGR~d~~i~~~ 26 (263)
|+|..| .||.||.| |+.. |++.
T Consensus 331 TMNt~Drs~~~lD~AlrR--RF~f-i~i~ 356 (459)
T PRK11331 331 LMNTADRSLAVVDYALRR--RFSF-IDIE 356 (459)
T ss_pred ecCccccchhhccHHHHh--hhhe-EEec
Confidence 778887 89999999 9966 4444
No 66
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=22.83 E-value=82 Score=30.15 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=36.3
Q ss_pred CCCCCC-CccccccCCCccceEEEeCCCC-HHHHHHHHHHhcCChhhHHHHHHHh
Q psy1374 2 STQALT-ILDPALVRPGRVDLKEYIGFCS-RHQLEQMYKRFYQDVDNASKFADQA 54 (263)
Q Consensus 2 tTN~~~-~lD~AliRpGR~d~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~ 54 (263)
|.|-.| .|.++|+. ||.++|.+++|+ .+...+|+++....+.....|.++.
T Consensus 193 T~np~eg~l~~~Lld--Rf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~ 245 (350)
T CHL00081 193 SGNPEEGELRPQLLD--RFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKY 245 (350)
T ss_pred ccCcccCCCCHHHHH--HhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhh
Confidence 344334 58899998 999999999998 5899999988644333334454443
No 67
>COG5005 Mu-like prophage protein gpG [General function prediction only]
Probab=22.68 E-value=57 Score=27.05 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCCCCCCCeeeeCccchHHHHHHHHhhhC
Q psy1374 221 PKRRRPLNSVVLDSGVADRILADIRQFVA 249 (263)
Q Consensus 221 ~r~~RplsTViLd~~~ke~ll~Di~eFL~ 249 (263)
.-|.||. ..|+++-.++|++||++|++
T Consensus 109 ~IpARpf--l~l~~~deqei~d~i~~yf~ 135 (140)
T COG5005 109 AIPARPF--LGLTPDDEQEIMDDIQDYFS 135 (140)
T ss_pred ccCCCcc--cccChhhHHHHHHHHHHHHH
Confidence 4688998 45788888999999999986
No 68
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=22.57 E-value=47 Score=21.96 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=9.2
Q ss_pred EEEEEEecC--------ChHHHHHHHHHHH
Q psy1374 173 TVTLTAFGR--------DRSLFFNILEEAR 194 (263)
Q Consensus 173 ~ltIs~lg~--------s~~~l~~lL~ear 194 (263)
.|-++|+|. +...|+||++|--
T Consensus 8 vialtClggLasPgPvp~~~alkELIeELv 37 (43)
T PF03487_consen 8 VIALTCLGGLASPGPVPSSTALKELIEELV 37 (43)
T ss_dssp ---------------S-HHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHH
Confidence 366788884 3456899998854
No 69
>cd07202 cPLA2_Grp-IVC Group IVC cytoplasmic phospholipase A2; catalytic domain; Ca-independent. Group IVC cPLA2, a small 61 kDa protein, is a single domain alpha/beta hydrolase. It lacks a C2 domain; therefore, it has no Ca-dependence. Group IVC cPLA2 is also referred to as cPLA2-gamma. The cPLA2-gamma enzyme is predominantly found in cardiac and skeletal muscles, and to a lesser extent in the brain. Human cPLA2-gamma is approximately 30% identical to cPLA2-alpha. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms. Movement of the cPLA2 lid possibly exposes a greater hydrophobic surface and the active site. cPLA2 be
Probab=22.54 E-value=59 Score=32.10 Aligned_cols=24 Identities=29% Similarity=0.462 Sum_probs=19.3
Q ss_pred ccccCCCc-cceEEEeCCCCHHHHH
Q psy1374 11 PALVRPGR-VDLKEYIGFCSRHQLE 34 (263)
Q Consensus 11 ~AliRpGR-~d~~i~~~~~~~~~~~ 34 (263)
+-|+|||| ||+.|.|+.......+
T Consensus 298 ~~lLrP~R~VDlIisfD~Sa~~pf~ 322 (430)
T cd07202 298 PLVLPPVRNTDLILSFDFSEGDPFE 322 (430)
T ss_pred ccccCCCCcccEEEEeecCCCchhH
Confidence 35899998 9999999998765444
No 70
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=21.30 E-value=1.5e+02 Score=28.19 Aligned_cols=48 Identities=4% Similarity=0.072 Sum_probs=34.6
Q ss_pred CccccccCCCccceEEEeCCCCHHHHHHHHHHhcCCh--hhHHHHHHHhhhc
Q psy1374 8 ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDV--DNASKFADQAKKK 57 (263)
Q Consensus 8 ~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~ 57 (263)
.|+.|++- |+-+.+.++||+.+.-.+|+....+.. ..+++.++.+-++
T Consensus 202 ~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 202 QINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRV 251 (327)
T ss_pred cCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 45778887 898999999999999999998765422 2244555555444
No 71
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=20.78 E-value=85 Score=29.08 Aligned_cols=36 Identities=22% Similarity=0.238 Sum_probs=26.5
Q ss_pred CCCCccccccCCCccceEEEeCCC-CHHHHHHHHHHhcC
Q psy1374 5 ALTILDPALVRPGRVDLKEYIGFC-SRHQLEQMYKRFYQ 42 (263)
Q Consensus 5 ~~~~lD~AliRpGR~d~~i~~~~~-~~~~~~~~~~~~~~ 42 (263)
.-..|..|+++ |+-+.+.+++| +......+..+.-+
T Consensus 168 g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 168 GTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred CCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 55678899998 99999999999 44445555544443
No 72
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=20.60 E-value=86 Score=30.85 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=32.4
Q ss_pred CCCCCC----CCccccccCCCccc--eEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQAL----TILDPALVRPGRVD--LKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~----~~lD~AliRpGR~d--~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+|||.+ ..||++|.. |+. ..+.+..|+.+.+..++++...
T Consensus 240 lts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~pd~e~r~~iL~~k~~ 285 (445)
T PRK12422 240 ISSTCAPQDLKAMEERLIS--RFEWGIAIPLHPLTKEGLRSFLERKAE 285 (445)
T ss_pred EecCCCHHHHhhhHHHHHh--hhcCCeEEecCCCCHHHHHHHHHHHHH
Confidence 466654 467889887 886 8999999999999999988664
No 73
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=20.23 E-value=74 Score=30.27 Aligned_cols=37 Identities=8% Similarity=0.050 Sum_probs=31.9
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRF 40 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~ 40 (263)
++|++|+.|.|.++. |. ..|.|+.|+.++..+.+...
T Consensus 167 L~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 167 LVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred EEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 478999999999886 77 79999999999998888764
Done!