Query psy1374
Match_columns 263
No_of_seqs 222 out of 1559
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 19:20:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 99.0 7.6E-11 2.6E-15 112.1 3.0 43 1-43 292-334 (405)
2 4b4t_I 26S protease regulatory 99.0 8.1E-11 2.8E-15 112.7 3.2 43 1-43 326-368 (437)
3 4b4t_M 26S protease regulatory 99.0 1.9E-10 6.6E-15 110.2 4.0 42 1-42 325-366 (434)
4 4b4t_L 26S protease subunit RP 99.0 1.7E-10 5.8E-15 110.7 2.6 43 1-43 325-367 (437)
5 4b4t_H 26S protease regulatory 98.9 2.5E-10 8.4E-15 110.2 3.0 43 1-43 353-395 (467)
6 4b4t_K 26S protease regulatory 98.9 7.3E-10 2.5E-14 106.0 3.1 43 1-43 316-359 (428)
7 3cf2_A TER ATPase, transitiona 98.6 6.9E-09 2.4E-13 106.1 1.0 43 1-43 621-663 (806)
8 2x8a_A Nuclear valosin-contain 98.5 3.8E-08 1.3E-12 88.1 2.7 42 1-42 151-192 (274)
9 3cf2_A TER ATPase, transitiona 98.2 6.6E-07 2.2E-11 91.6 5.1 43 1-43 345-387 (806)
10 3cf0_A Transitional endoplasmi 98.1 1.5E-06 5.1E-11 78.1 3.4 43 1-43 159-201 (301)
11 1g41_A Heat shock protein HSLU 98.0 8.4E-07 2.9E-11 85.2 0.0 37 3-39 153-190 (444)
12 2ce7_A Cell division protein F 97.9 3.5E-06 1.2E-10 81.5 3.4 43 1-43 159-201 (476)
13 1lv7_A FTSH; alpha/beta domain 97.9 6E-06 2.1E-10 71.8 4.2 43 1-43 155-197 (257)
14 1ixz_A ATP-dependent metallopr 97.9 5.5E-06 1.9E-10 71.9 3.7 41 2-42 160-200 (254)
15 1ypw_A Transitional endoplasmi 97.9 1.7E-06 5.7E-11 88.5 -0.5 43 1-43 621-663 (806)
16 2qz4_A Paraplegin; AAA+, SPG7, 97.8 6.7E-06 2.3E-10 71.0 2.9 42 1-42 150-191 (262)
17 3t15_A Ribulose bisphosphate c 97.8 3.2E-06 1.1E-10 75.9 0.8 41 1-43 160-200 (293)
18 2dhr_A FTSH; AAA+ protein, hex 97.8 1.1E-05 3.7E-10 78.5 4.4 42 1-42 174-215 (499)
19 1iy2_A ATP-dependent metallopr 97.8 1.1E-05 3.9E-10 71.1 3.4 41 2-42 184-224 (278)
20 2r62_A Cell division protease 97.6 1.4E-05 4.9E-10 69.6 1.7 43 1-43 156-198 (268)
21 3h4m_A Proteasome-activating n 97.5 3.5E-05 1.2E-09 67.6 2.5 43 1-43 161-203 (285)
22 3hu3_A Transitional endoplasmi 97.3 0.00014 4.7E-09 70.3 3.7 43 1-43 345-387 (489)
23 1xwi_A SKD1 protein; VPS4B, AA 97.1 0.00017 5.9E-09 65.5 2.3 41 1-43 154-194 (322)
24 3eie_A Vacuolar protein sortin 96.8 0.00026 8.8E-09 63.9 1.1 41 1-43 159-199 (322)
25 2zan_A Vacuolar protein sortin 96.8 0.00074 2.5E-08 64.1 3.6 41 1-43 276-316 (444)
26 2qp9_X Vacuolar protein sortin 96.7 0.00046 1.6E-08 63.5 1.5 41 1-43 192-232 (355)
27 1ypw_A Transitional endoplasmi 96.0 0.0038 1.3E-07 63.7 4.1 43 1-43 345-387 (806)
28 3b9p_A CG5977-PA, isoform A; A 95.7 0.0033 1.1E-07 55.2 2.0 40 1-42 164-203 (297)
29 3d8b_A Fidgetin-like protein 1 95.7 0.006 2.1E-07 55.8 3.6 40 1-42 226-265 (357)
30 3vfd_A Spastin; ATPase, microt 95.7 0.0062 2.1E-07 56.2 3.6 41 1-43 257-297 (389)
31 2c9o_A RUVB-like 1; hexameric 95.6 0.002 6.8E-08 61.1 0.1 30 1-30 195-226 (456)
32 3m6a_A ATP-dependent protease 91.6 0.055 1.9E-06 52.5 1.6 38 1-41 229-266 (543)
33 3pfi_A Holliday junction ATP-d 88.3 0.19 6.4E-06 44.6 2.1 40 1-42 159-198 (338)
34 1hqc_A RUVB; extended AAA-ATPa 88.2 0.39 1.3E-05 42.1 4.1 40 1-42 143-182 (324)
35 2r44_A Uncharacterized protein 87.1 0.29 9.8E-06 43.5 2.5 33 9-43 168-200 (331)
36 1g8p_A Magnesium-chelatase 38 86.8 0.34 1.2E-05 42.8 2.9 48 2-51 193-242 (350)
37 1svm_A Large T antigen; AAA+ f 85.5 0.078 2.7E-06 49.4 -2.1 26 1-27 259-284 (377)
38 3pxg_A Negative regulator of g 84.1 0.53 1.8E-05 44.6 2.9 39 2-43 297-340 (468)
39 4fcw_A Chaperone protein CLPB; 82.4 0.37 1.3E-05 41.9 1.0 35 6-42 196-230 (311)
40 1ofh_A ATP-dependent HSL prote 80.8 0.72 2.4E-05 39.8 2.3 35 3-39 179-213 (310)
41 3pxi_A Negative regulator of g 80.6 0.83 2.8E-05 45.7 2.9 39 2-43 297-340 (758)
42 2chg_A Replication factor C sm 79.8 1.2 4.2E-05 35.6 3.3 51 1-54 137-193 (226)
43 1d2n_A N-ethylmaleimide-sensit 76.8 0.74 2.5E-05 39.6 1.1 53 1-54 172-226 (272)
44 3uk6_A RUVB-like 2; hexameric 71.3 1.8 6E-05 38.6 2.2 36 4-42 238-273 (368)
45 3u61_B DNA polymerase accessor 70.9 1.2 4E-05 39.2 0.9 37 1-40 141-177 (324)
46 3f9v_A Minichromosome maintena 69.8 1.9 6.6E-05 42.2 2.3 40 1-43 439-492 (595)
47 3syl_A Protein CBBX; photosynt 68.6 1.9 6.6E-05 37.3 1.8 33 8-42 186-218 (309)
48 1r6b_X CLPA protein; AAA+, N-t 68.3 2 6.9E-05 42.7 2.1 33 8-42 635-667 (758)
49 2qby_B CDC6 homolog 3, cell di 67.4 2.6 9E-05 37.4 2.5 39 1-41 169-210 (384)
50 3pxi_A Negative regulator of g 67.1 2.4 8.3E-05 42.3 2.4 39 1-41 625-675 (758)
51 4akg_A Glutathione S-transfera 61.9 2.7 9.1E-05 48.4 1.7 39 1-42 1389-1432(2695)
52 1njg_A DNA polymerase III subu 59.2 3.8 0.00013 32.9 1.8 39 1-42 161-199 (250)
53 1qvr_A CLPB protein; coiled co 56.8 2.8 9.7E-05 42.5 0.7 37 2-41 305-345 (854)
54 2v1u_A Cell division control p 55.8 4.3 0.00015 35.7 1.7 39 1-41 172-214 (387)
55 2chq_A Replication factor C sm 54.0 5.7 0.00019 34.0 2.1 51 1-54 137-193 (319)
56 1r6b_X CLPA protein; AAA+, N-t 52.2 4.7 0.00016 40.0 1.4 31 8-41 332-362 (758)
57 1in4_A RUVB, holliday junction 51.6 7.2 0.00025 34.7 2.5 38 2-41 156-193 (334)
58 1a5t_A Delta prime, HOLB; zinc 48.0 15 0.0005 32.6 3.9 39 1-42 143-181 (334)
59 1sxj_D Activator 1 41 kDa subu 46.9 7.1 0.00024 34.1 1.6 38 1-41 168-205 (353)
60 3hws_A ATP-dependent CLP prote 44.5 14 0.00049 32.9 3.3 31 9-41 239-269 (363)
61 1sxj_E Activator 1 40 kDa subu 43.0 13 0.00043 32.7 2.6 52 1-55 169-227 (354)
62 1iqp_A RFCS; clamp loader, ext 42.6 11 0.00036 32.4 2.0 52 1-55 145-202 (327)
63 3nbx_X ATPase RAVA; AAA+ ATPas 41.7 7.8 0.00027 37.2 1.1 39 1-41 154-196 (500)
64 4b4t_M 26S protease regulatory 41.3 11 0.00037 35.6 2.0 43 221-263 174-216 (434)
65 1kvn_A SRP19; RNA binding prot 39.9 10 0.00034 29.0 1.2 31 42-73 73-103 (104)
66 3bos_A Putative DNA replicatio 36.0 14 0.00048 29.9 1.7 33 8-42 154-188 (242)
67 1sxj_B Activator 1 37 kDa subu 35.4 14 0.00047 31.6 1.5 38 1-41 142-179 (323)
68 3kw6_A 26S protease regulatory 33.8 24 0.00082 24.4 2.4 18 26-43 1-18 (78)
69 4b4t_I 26S protease regulatory 29.6 20 0.00069 33.9 1.8 31 233-263 187-217 (437)
70 2w7n_A TRFB transcriptional re 28.3 89 0.003 23.4 4.9 45 179-242 44-88 (101)
71 1l8q_A Chromosomal replication 27.0 20 0.00068 31.2 1.1 32 8-42 147-180 (324)
72 2p8i_A Putative dioxygenase; Y 26.9 23 0.00078 27.6 1.3 80 18-120 12-91 (117)
73 4b4t_K 26S protease regulatory 26.8 31 0.0011 32.4 2.5 41 223-263 167-207 (428)
74 2qby_A CDC6 homolog 1, cell di 25.1 23 0.00079 30.8 1.2 39 1-41 168-210 (386)
75 1qvr_A CLPB protein; coiled co 23.4 17 0.00058 36.8 -0.0 31 9-41 740-770 (854)
76 1jr3_A DNA polymerase III subu 22.8 33 0.0011 29.9 1.8 38 1-41 154-191 (373)
77 2eqx_A Kelch repeat and BTB do 21.0 85 0.0029 22.9 3.5 19 91-109 65-83 (105)
78 2jvf_A De novo protein M7; tet 20.5 34 0.0011 24.6 1.0 32 8-39 37-68 (96)
79 2z4s_A Chromosomal replication 20.4 15 0.00052 34.1 -1.0 32 9-42 244-277 (440)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.02 E-value=7.6e-11 Score=112.07 Aligned_cols=43 Identities=37% Similarity=0.478 Sum_probs=41.1
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.|||||+||||||++|+|++||.+++.+||+.+...
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 334 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK 334 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999988865
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.02 E-value=8.1e-11 Score=112.71 Aligned_cols=43 Identities=30% Similarity=0.437 Sum_probs=41.2
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.|||||+||||||++|+|++||.+++.+||+.++..
T Consensus 326 aATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 326 MATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp EEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred EeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999998864
No 3
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=1.9e-10 Score=110.18 Aligned_cols=42 Identities=31% Similarity=0.430 Sum_probs=40.1
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+|||+|+.|||||+||||||++|+|++||.+++.+||+.++.
T Consensus 325 aaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~ 366 (434)
T 4b4t_M 325 AATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSR 366 (434)
T ss_dssp EECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred EeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhc
Confidence 589999999999999999999999999999999999998875
No 4
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.7e-10 Score=110.69 Aligned_cols=43 Identities=35% Similarity=0.468 Sum_probs=40.8
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.|||||+||||||++|+|++||.+++.+||+.++..
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999988754
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.94 E-value=2.5e-10 Score=110.21 Aligned_cols=43 Identities=28% Similarity=0.463 Sum_probs=41.1
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.|||||+||||||++|+|++|+.+++.+||+.++..
T Consensus 353 aATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~ 395 (467)
T 4b4t_H 353 FATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395 (467)
T ss_dssp EECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT
T ss_pred eCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 5899999999999999999999999999999999999988864
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.86 E-value=7.3e-10 Score=106.02 Aligned_cols=43 Identities=33% Similarity=0.509 Sum_probs=40.1
Q ss_pred CCCCCCCCccccccCCCccceEEEeC-CCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIG-FCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~-~~~~~~~~~~~~~~~~~ 43 (263)
||||+|+.|||||+||||||++|+|+ +|+.+++.+||+.+...
T Consensus 316 ~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~ 359 (428)
T 4b4t_K 316 MATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASK 359 (428)
T ss_dssp EEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHS
T ss_pred EecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 59999999999999999999999995 99999999999988753
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.60 E-value=6.9e-09 Score=106.14 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=35.1
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
.|||+|+.|||||+||||||++|+|++||.+++.+||+.++..
T Consensus 621 ~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~ 663 (806)
T 3cf2_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSC
T ss_pred EeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcC
Confidence 4899999999999999999999999999999999999999875
No 8
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.49 E-value=3.8e-08 Score=88.11 Aligned_cols=42 Identities=29% Similarity=0.527 Sum_probs=39.9
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
.+||+|+.||+||+||||||..|+|++|+.+++.+|++.+..
T Consensus 151 a~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~ 192 (274)
T 2x8a_A 151 AATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITK 192 (274)
T ss_dssp EEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTT
T ss_pred eecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 379999999999999999999999999999999999999884
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.24 E-value=6.6e-07 Score=91.60 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=40.8
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
.|||+|+.|||||+||||||..|+|++|+.+++.+|++.+...
T Consensus 345 aaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~ 387 (806)
T 3cf2_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp EECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS
T ss_pred EecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC
Confidence 3899999999999999999999999999999999999998864
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.08 E-value=1.5e-06 Score=78.14 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=40.5
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+++.||+||+||||+|..|+|++|+.+++.+|+.+++..
T Consensus 159 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~ 201 (301)
T 3cf0_A 159 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 201 (301)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred EecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHcc
Confidence 4899999999999999999999999999999999999998854
No 11
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.99 E-value=8.4e-07 Score=85.21 Aligned_cols=37 Identities=8% Similarity=-0.079 Sum_probs=0.0
Q ss_pred CCCCCCccccccCCCccceEEEeCCCCHH-HHHHHHHH
Q psy1374 3 TQALTILDPALVRPGRVDLKEYIGFCSRH-QLEQMYKR 39 (263)
Q Consensus 3 TN~~~~lD~AliRpGR~d~~i~~~~~~~~-~~~~~~~~ 39 (263)
||+|+.||+||.||||+|++|+|++|+.. ++.+||..
T Consensus 153 TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~~~ 190 (444)
T 1g41_A 153 SSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAP 190 (444)
T ss_dssp --------------------------------------
T ss_pred ccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhhcC
Confidence 99999999999999999999999999987 66777643
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.94 E-value=3.5e-06 Score=81.47 Aligned_cols=43 Identities=30% Similarity=0.393 Sum_probs=40.2
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.|||||+||||||..|.|++|+.+++.+|++.+...
T Consensus 159 aaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~ 201 (476)
T 2ce7_A 159 AATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN 201 (476)
T ss_dssp EEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred EecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh
Confidence 3799999999999999999999999999999999999988764
No 13
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.92 E-value=6e-06 Score=71.79 Aligned_cols=43 Identities=35% Similarity=0.531 Sum_probs=40.0
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+++.||+||+||||+|..|+|++|+.+++.+|+..+...
T Consensus 155 ~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~ 197 (257)
T 1lv7_A 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 197 (257)
T ss_dssp EEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred EeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999988753
No 14
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.91 E-value=5.5e-06 Score=71.91 Aligned_cols=41 Identities=37% Similarity=0.453 Sum_probs=38.9
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+||+|+.||+||+||||+|..|+|++|+.+++.+|++.+..
T Consensus 160 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 200 (254)
T 1ixz_A 160 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 200 (254)
T ss_dssp EESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT
T ss_pred ccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc
Confidence 78999999999999999999999999999999999988764
No 15
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.86 E-value=1.7e-06 Score=88.46 Aligned_cols=43 Identities=30% Similarity=0.452 Sum_probs=40.9
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.||+||+||||||..|+|++|+.+++.+|++.++..
T Consensus 621 ~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~ 663 (806)
T 1ypw_A 621 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRK 663 (806)
T ss_dssp CCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSC
T ss_pred EecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhcc
Confidence 5999999999999999999999999999999999999998854
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.83 E-value=6.7e-06 Score=70.96 Aligned_cols=42 Identities=31% Similarity=0.560 Sum_probs=39.8
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+|||+++.||+||+||||+|..++|++|+.+++.+|+.+++.
T Consensus 150 ~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~ 191 (262)
T 2qz4_A 150 ASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLK 191 (262)
T ss_dssp EEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHH
T ss_pred ecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHH
Confidence 479999999999999999999999999999999999998875
No 17
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.82 E-value=3.2e-06 Score=75.93 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=36.2
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+++.||+||+||||+|..|+ +|+.+++.+|++.++.+
T Consensus 160 ~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~ 200 (293)
T 3t15_A 160 VTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRT 200 (293)
T ss_dssp EECSSCCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGG
T ss_pred EecCCcccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccC
Confidence 589999999999999999999998 57999999999998875
No 18
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.82 E-value=1.1e-05 Score=78.47 Aligned_cols=42 Identities=36% Similarity=0.437 Sum_probs=39.6
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
.|||+|+.||+||+||||+|+.|+|++|+.+++.+|++.+..
T Consensus 174 Aatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~ 215 (499)
T 2dhr_A 174 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 215 (499)
T ss_dssp ECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS
T ss_pred EecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh
Confidence 379999999999999999999999999999999999998864
No 19
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.77 E-value=1.1e-05 Score=71.12 Aligned_cols=41 Identities=37% Similarity=0.453 Sum_probs=39.0
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+||+|+.||+||+||||+|..|+|++|+.+++.+|+..+..
T Consensus 184 ~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~ 224 (278)
T 1iy2_A 184 ATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR 224 (278)
T ss_dssp EESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT
T ss_pred ecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc
Confidence 78999999999999999999999999999999999998764
No 20
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.62 E-value=1.4e-05 Score=69.57 Aligned_cols=43 Identities=30% Similarity=0.397 Sum_probs=40.4
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||.++.||+|++||||+|..|+|++|+.+++.+++..++..
T Consensus 156 ~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 156 AATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp ECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred EecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999988754
No 21
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.50 E-value=3.5e-05 Score=67.59 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=40.6
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||.++.||+|++||||+|..|+|+.|+.+++.+|+..+...
T Consensus 161 ~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 161 GATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRK 203 (285)
T ss_dssp EECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTT
T ss_pred EeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999998764
No 22
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.26 E-value=0.00014 Score=70.35 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=40.7
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
.|||+++.||+||.||||+|..|+|++|+.+++.+|+..+...
T Consensus 345 aaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~ 387 (489)
T 3hu3_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (489)
T ss_dssp EEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT
T ss_pred EecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc
Confidence 3899999999999999999999999999999999999998864
No 23
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.09 E-value=0.00017 Score=65.47 Aligned_cols=41 Identities=27% Similarity=0.333 Sum_probs=38.4
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.||+||+| |+|..|++++|+.+++.+|+..++..
T Consensus 154 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~ 194 (322)
T 1xwi_A 154 GATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGT 194 (322)
T ss_dssp EEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred EecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhc
Confidence 379999999999999 99999999999999999999998754
No 24
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.84 E-value=0.00026 Score=63.93 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.||+||+| |+|..|++++|+.+++.+|+..++..
T Consensus 159 ~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~ 199 (322)
T 3eie_A 159 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGD 199 (322)
T ss_dssp EEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred EecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhcc
Confidence 389999999999999 99999999999999999999998864
No 25
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.75 E-value=0.00074 Score=64.08 Aligned_cols=41 Identities=24% Similarity=0.335 Sum_probs=38.5
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.||+||+| |+|..|++++|+.+++.+|+..++..
T Consensus 276 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~ 316 (444)
T 2zan_A 276 GATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGS 316 (444)
T ss_dssp EEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred ecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhc
Confidence 389999999999999 99999999999999999999998754
No 26
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.67 E-value=0.00046 Score=63.47 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=38.4
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+|+.||+||+| |+|..|+|++|+.+++.+|+..++..
T Consensus 192 ~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~ 232 (355)
T 2qp9_X 192 GATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGD 232 (355)
T ss_dssp EEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred eecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhh
Confidence 379999999999999 99999999999999999999998754
No 27
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.03 E-value=0.0038 Score=63.66 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=40.2
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||+++.||+||.||||+|..|.++.|+.+++.+|+..+...
T Consensus 345 ~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~ 387 (806)
T 1ypw_A 345 AATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN 387 (806)
T ss_dssp EECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTT
T ss_pred cccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999988754
No 28
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.75 E-value=0.0033 Score=55.19 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=37.3
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+|||+|+.||+|++| |++..+++++|+.+++..|+..++.
T Consensus 164 ~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~ 203 (297)
T 3b9p_A 164 AATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQ 203 (297)
T ss_dssp EEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHG
T ss_pred eecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHH
Confidence 379999999999999 9999999999999999999988764
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.70 E-value=0.006 Score=55.84 Aligned_cols=40 Identities=20% Similarity=0.161 Sum_probs=37.3
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+|||.++.||+||+| |++..+++++|+.+++.+++..++.
T Consensus 226 ~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~ 265 (357)
T 3d8b_A 226 GATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMS 265 (357)
T ss_dssp EEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHH
T ss_pred EecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHh
Confidence 379999999999999 9999999999999999999988764
No 30
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.67 E-value=0.0062 Score=56.19 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=38.0
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
.|||+++.||+||+| |++..|+|++|+.+++.+|+..++..
T Consensus 257 ~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~ 297 (389)
T 3vfd_A 257 GATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCK 297 (389)
T ss_dssp EEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTT
T ss_pred EecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHh
Confidence 379999999999999 99999999999999999999988753
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.64 E-value=0.002 Score=61.11 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=26.8
Q ss_pred CCCCCCCCccccccCCCccce--EEEeCCCCH
Q psy1374 1 MSTQALTILDPALVRPGRVDL--KEYIGFCSR 30 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~--~i~~~~~~~ 30 (263)
.|||+++.||+|+.||||+|+ .+++++|+.
T Consensus 195 attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 195 ANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp TTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred cCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 489999999999999999999 778888854
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=91.64 E-value=0.055 Score=52.53 Aligned_cols=38 Identities=13% Similarity=0.110 Sum_probs=35.5
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
+|||.++.|||||++ |++ .|+|+.|+.+++.+|+..++
T Consensus 229 ~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 229 ATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred eccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 589999999999999 997 59999999999999999887
No 33
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=88.27 E-value=0.19 Score=44.64 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=36.6
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+|||+.+.+|++|.+ |+|..|.|+.|+.+++.+++.++..
T Consensus 159 ~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~ 198 (338)
T 3pfi_A 159 GATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAAL 198 (338)
T ss_dssp EEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred EeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHH
Confidence 378999999999998 9999999999999999999988764
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.18 E-value=0.39 Score=42.06 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=36.3
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
+|||+++.++++|.+ |++..+.|+.|+.+++.+++..+..
T Consensus 143 ~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 143 GATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDAR 182 (324)
T ss_dssp EEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHH
T ss_pred EeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHH
Confidence 379999999999986 9999999999999999999988764
No 35
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.08 E-value=0.29 Score=43.46 Aligned_cols=33 Identities=18% Similarity=0.199 Sum_probs=30.8
Q ss_pred ccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 9 LDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 9 lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
||+||++ ||++++.|++|+.+++.+|+......
T Consensus 168 l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 168 LPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNM 200 (331)
T ss_dssp CCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCT
T ss_pred CCHHHHh--heeEEEEcCCCCHHHHHHHHHhcccc
Confidence 9999999 99999999999999999999988764
No 36
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=86.84 E-value=0.34 Score=42.83 Aligned_cols=48 Identities=17% Similarity=0.072 Sum_probs=35.8
Q ss_pred CCCCCC-CccccccCCCccceEEEeCCC-CHHHHHHHHHHhcCChhhHHHHH
Q psy1374 2 STQALT-ILDPALVRPGRVDLKEYIGFC-SRHQLEQMYKRFYQDVDNASKFA 51 (263)
Q Consensus 2 tTN~~~-~lD~AliRpGR~d~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~f~ 51 (263)
|||..+ .||+||++ |++.++.++.| +.+...+|+.+..........|.
T Consensus 193 ~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~ 242 (350)
T 1g8p_A 193 SGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFL 242 (350)
T ss_dssp EECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHH
T ss_pred EeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhc
Confidence 678755 89999999 99999999999 67777788877543322233444
No 37
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=85.54 E-value=0.078 Score=49.44 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=23.6
Q ss_pred CCCCCCCCccccccCCCccceEEEeCC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGF 27 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~ 27 (263)
++|||++.| +||+||||+|..++..+
T Consensus 259 ~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 259 LEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp ECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred eccCchhhH-HHhhcCcccChhHHhhc
Confidence 479999999 79999999999998866
No 38
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=84.14 E-value=0.53 Score=44.59 Aligned_cols=39 Identities=21% Similarity=0.072 Sum_probs=35.2
Q ss_pred CCCCCC-----CccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALT-----ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~-----~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
|||.++ .+|+||.| |+++ |.|+.|+.+++.+|+..+...
T Consensus 297 at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred cCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 789888 69999999 9996 999999999999999987654
No 39
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.36 E-value=0.37 Score=41.93 Aligned_cols=35 Identities=14% Similarity=0.178 Sum_probs=30.7
Q ss_pred CCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 6 LTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 6 ~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
.+.++|+|+ +|+|..+.|..|+.+++.+|+.+++.
T Consensus 196 ~~~~~~~l~--~R~~~~~~~~p~~~~~~~~i~~~~l~ 230 (311)
T 4fcw_A 196 QQHFRPEFL--NRLDEIVVFRPLTKEQIRQIVEIQMS 230 (311)
T ss_dssp HHHSCHHHH--TTCSEEEECCCCCHHHHHHHHHHHTH
T ss_pred HHhCCHHHH--hcCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 557888988 59999999999999999999998764
No 40
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.81 E-value=0.72 Score=39.80 Aligned_cols=35 Identities=17% Similarity=0.195 Sum_probs=32.2
Q ss_pred CCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHH
Q psy1374 3 TQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKR 39 (263)
Q Consensus 3 TN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~ 39 (263)
+|.++.|||+|+. |++..|+|+.|+.+++.+|+.+
T Consensus 179 ~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 179 VARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp SSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred cCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 6788999999995 9999999999999999999985
No 41
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=80.57 E-value=0.83 Score=45.69 Aligned_cols=39 Identities=21% Similarity=0.087 Sum_probs=34.5
Q ss_pred CCCCCC-----CccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 2 STQALT-----ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 2 tTN~~~-----~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
|||..+ .+|+||.| |++ .|.|+.|+.+++.+|+..+...
T Consensus 297 at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred CCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 789888 79999999 996 4999999999999999976543
No 42
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=79.85 E-value=1.2 Score=35.58 Aligned_cols=51 Identities=6% Similarity=0.028 Sum_probs=39.7
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC------ChhhHHHHHHHh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ------DVDNASKFADQA 54 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~f~~~~ 54 (263)
+|||.++.++++|.+ |++ .|.|+.++.++..+++..++. +++.++.+++..
T Consensus 137 ~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 193 (226)
T 2chg_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS 193 (226)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred EEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 378999999999998 787 899999999999999988763 234445555444
No 43
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=76.77 E-value=0.74 Score=39.57 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=36.6
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCH-HHHHHHHHHhcCC-hhhHHHHHHHh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSR-HQLEQMYKRFYQD-VDNASKFADQA 54 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~-~~~~~~~~~~~~~-~~~~~~f~~~~ 54 (263)
+|||.++.||++.++ +|++..|+++.++. +++..++.+...- ++.....++..
T Consensus 172 ~ttn~~~~l~~~~l~-~rf~~~i~~p~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~ 226 (272)
T 1d2n_A 172 GTTSRKDVLQEMEML-NAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQV 226 (272)
T ss_dssp EEESCHHHHHHTTCT-TTSSEEEECCCEEEHHHHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred EecCChhhcchhhhh-cccceEEcCCCccHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 479999999996555 69999999987665 7777777664332 33444444444
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=71.33 E-value=1.8 Score=38.57 Aligned_cols=36 Identities=14% Similarity=0.043 Sum_probs=32.3
Q ss_pred CCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 4 QALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 4 N~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
|.++.||++|++ |+.. |.|+.|+.+++.+++...+.
T Consensus 238 ~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~ 273 (368)
T 3uk6_A 238 QSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCE 273 (368)
T ss_dssp EEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHH
Confidence 578999999999 9987 89999999999999997764
No 45
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=70.93 E-value=1.2 Score=39.17 Aligned_cols=37 Identities=14% Similarity=0.129 Sum_probs=31.0
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRF 40 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~ 40 (263)
+|||.++.|+++|.+ |+. .|.|+.|+.+++.+|+..+
T Consensus 141 ~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~ 177 (324)
T 3u61_B 141 ITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQM 177 (324)
T ss_dssp EEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHH
T ss_pred EEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHH
Confidence 479999999999998 885 6999999998877666544
No 46
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=69.84 E-value=1.9 Score=42.17 Aligned_cols=40 Identities=10% Similarity=0.056 Sum_probs=32.7
Q ss_pred CCCCCCC-------------CccccccCCCccc-eEEEeCCCCHHHHHHHHHHhcCC
Q psy1374 1 MSTQALT-------------ILDPALVRPGRVD-LKEYIGFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 1 mtTN~~~-------------~lD~AliRpGR~d-~~i~~~~~~~~~~~~~~~~~~~~ 43 (263)
+|||.++ .|++||++ |+| +.+..++|+.+ ...|..++...
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 4788887 89999999 999 57778889888 88888777653
No 47
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=68.63 E-value=1.9 Score=37.29 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=30.2
Q ss_pred CccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 8 ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 8 ~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
.+||+|.+ |++..|+|+.|+.+++.+|+.+++.
T Consensus 186 ~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 186 QSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp HHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred hhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 36899998 9999999999999999999998875
No 48
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=68.30 E-value=2 Score=42.71 Aligned_cols=33 Identities=21% Similarity=0.367 Sum_probs=28.5
Q ss_pred CccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 8 ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 8 ~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
.++|+|+. |||..|.|+.++.+++..|+..++.
T Consensus 635 ~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 635 IFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_dssp HSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred hcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHH
Confidence 67888885 9999999999999999999987653
No 49
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=67.45 E-value=2.6 Score=37.42 Aligned_cols=39 Identities=10% Similarity=0.247 Sum_probs=34.0
Q ss_pred CCCCCC---CCccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 1 MSTQAL---TILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 1 mtTN~~---~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
+|||.+ +.||+++.+ |++..|.|+.++.+++.+++...+
T Consensus 169 ~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 169 MISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp EECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHH
T ss_pred EEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHH
Confidence 368877 789999987 887799999999999999999864
No 50
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=67.09 E-value=2.4 Score=42.29 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=29.9
Q ss_pred CCCCCCCC------------ccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 1 MSTQALTI------------LDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 1 mtTN~~~~------------lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
||||.+.. ++|+|+ +|+|..|.|+.++.+++.+|+.+++
T Consensus 625 ~ttn~~~~~~~~~~~~~~~~f~p~l~--~Rl~~~i~~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 625 MTSNVGASEKDKVMGELKRAFRPEFI--NRIDEIIVFHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp EEESSSTTCCHHHHHHHHHHSCHHHH--TTSSEEEECC--CHHHHHHHHHHHH
T ss_pred EeCCCChhhHHHHHHHHHhhCCHHHH--hhCCeEEecCCCCHHHHHHHHHHHH
Confidence 57887655 566666 5999999999999999999998754
No 51
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.91 E-value=2.7 Score=48.39 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=34.4
Q ss_pred CCCCCCC-----CccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALT-----ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~-----~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
.|||+|. .|||||+| |+ ..|++++|+.+++..||..++.
T Consensus 1389 aA~Npp~~gGR~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1389 GACNPPTDPGRIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp EEECCTTSTTCCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred EecCCCccCCCccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 3789995 89999999 77 6799999999999999998863
No 52
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=59.18 E-value=3.8 Score=32.86 Aligned_cols=39 Identities=13% Similarity=0.162 Sum_probs=33.4
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
++||.++.++++|.+ |+ ..|.|+.++.++..+++..++.
T Consensus 161 ~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 161 LATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp EEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHH
T ss_pred EEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHH
Confidence 468899999999987 53 6899999999999999998773
No 53
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=56.83 E-value=2.8 Score=42.52 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=31.0
Q ss_pred CCCCCC----CccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 2 STQALT----ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 2 tTN~~~----~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
|||.++ .+|+||.| |++. |.|+.|+.+++.+|++.+.
T Consensus 305 at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~ 345 (854)
T 1qvr_A 305 ATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLK 345 (854)
T ss_dssp EECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHH
T ss_pred ecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhh
Confidence 566665 48999999 9997 9999999999999997543
No 54
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=55.78 E-value=4.3 Score=35.70 Aligned_cols=39 Identities=15% Similarity=0.095 Sum_probs=33.7
Q ss_pred CCCCCC---CCccccccCCCccce-EEEeCCCCHHHHHHHHHHhc
Q psy1374 1 MSTQAL---TILDPALVRPGRVDL-KEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 1 mtTN~~---~~lD~AliRpGR~d~-~i~~~~~~~~~~~~~~~~~~ 41 (263)
+|||.+ +.|++++.+ |+.. .|.|+.++.+++.+++...+
T Consensus 172 ~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 172 GITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp EECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHH
T ss_pred EEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHH
Confidence 368887 889999988 8875 89999999999999998764
No 55
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=54.03 E-value=5.7 Score=34.03 Aligned_cols=51 Identities=6% Similarity=0.031 Sum_probs=38.8
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC------hhhHHHHHHHh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD------VDNASKFADQA 54 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~f~~~~ 54 (263)
++||.++.++++|.. |+. .|.|..|+.+++.+++..++.. ++.++.++...
T Consensus 137 ~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~ 193 (319)
T 2chq_A 137 LSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYIS 193 (319)
T ss_dssp EEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTT
T ss_pred EEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 368999999999998 555 8999999999999999877642 34445555443
No 56
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=52.20 E-value=4.7 Score=40.04 Aligned_cols=31 Identities=29% Similarity=0.135 Sum_probs=27.6
Q ss_pred CccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 8 ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 8 ~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
.+|+||.| |++ .|.|+.|+.+++.+|+..+.
T Consensus 332 ~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 332 EKDRALAR--RFQ-KIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHH
T ss_pred hcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHH
Confidence 58999999 999 69999999999999988654
No 57
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=51.55 E-value=7.2 Score=34.67 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=34.7
Q ss_pred CCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 2 STQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 2 tTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
+||+++.|++++.+ |+...+.|+.++.+++.+++.+..
T Consensus 156 at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 156 ATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp EESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHH
Confidence 57889999999998 999999999999999999998765
No 58
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=47.97 E-value=15 Score=32.60 Aligned_cols=39 Identities=15% Similarity=0.060 Sum_probs=33.4
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
++||.++.|+|++.. |. ..+.|+.|+.++..+++.....
T Consensus 143 l~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~~ 181 (334)
T 1a5t_A 143 LATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREVT 181 (334)
T ss_dssp EEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHCC
T ss_pred EEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhcC
Confidence 368999999999997 65 3699999999999999988764
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.90 E-value=7.1 Score=34.07 Aligned_cols=38 Identities=8% Similarity=-0.056 Sum_probs=33.2
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
++||+++.++++|.+ |+. .|.|+.++.++..+++...+
T Consensus 168 l~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 168 LICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp EEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred EEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHH
Confidence 368999999999998 776 89999999999999988765
No 60
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=44.49 E-value=14 Score=32.91 Aligned_cols=31 Identities=26% Similarity=0.306 Sum_probs=26.3
Q ss_pred ccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 9 LDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 9 lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
++|+|+ +|||..+.|..|+.+.+.+|+....
T Consensus 239 ~~~~l~--~R~~~~~~~~pl~~~~~~~I~~~~~ 269 (363)
T 3hws_A 239 LIPEFI--GRLPVVATLNELSEEALIQILKEPK 269 (363)
T ss_dssp CCHHHH--TTCCEEEECCCCCHHHHHHHHHSST
T ss_pred CCHHHh--cccCeeeecCCCCHHHHHHHHHHHH
Confidence 566666 6999999999999999999998643
No 61
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.03 E-value=13 Score=32.66 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=39.6
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcC------C-hhhHHHHHHHhh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQ------D-VDNASKFADQAK 55 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~------~-~~~~~~f~~~~~ 55 (263)
++||.++.++++|.. |+ ..+.|+.|+.+++.+++..... + ++.++.+++...
T Consensus 169 l~t~~~~~l~~~l~s--R~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~ 227 (354)
T 1sxj_E 169 MVCDSMSPIIAPIKS--QC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASN 227 (354)
T ss_dssp EEESCSCSSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHT
T ss_pred EEeCCHHHHHHHHHh--hc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcC
Confidence 478999999999987 66 7899999999999999987653 1 344455555443
No 62
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=42.55 E-value=11 Score=32.41 Aligned_cols=52 Identities=6% Similarity=-0.017 Sum_probs=38.9
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhcCC------hhhHHHHHHHhh
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQD------VDNASKFADQAK 55 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~~~------~~~~~~f~~~~~ 55 (263)
++||.++.|+++|.. |+. .+.|+.++.++..+++..+... ++.++.+++..+
T Consensus 145 ~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~ 202 (327)
T 1iqp_A 145 LSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAE 202 (327)
T ss_dssp EEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHT
T ss_pred EEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCC
Confidence 368999999999987 665 7899999999999999877532 344455555443
No 63
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=41.73 E-value=7.8 Score=37.17 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=29.8
Q ss_pred CCCCCCCC---ccccccCCCccceEEEeCCCCH-HHHHHHHHHhc
Q psy1374 1 MSTQALTI---LDPALVRPGRVDLKEYIGFCSR-HQLEQMYKRFY 41 (263)
Q Consensus 1 mtTN~~~~---lD~AliRpGR~d~~i~~~~~~~-~~~~~~~~~~~ 41 (263)
+|||.+.. +.+||+. ||+++|.+++|+. +.+..|+....
T Consensus 154 ~ATN~lpe~~~~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 154 AASNELPEADSSLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp EEESSCCCTTCTTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCC
T ss_pred hccccCCCccccHHHHHH--HHHHHHHHHHhhhhhhHHHHHhccc
Confidence 46775322 4459998 9999999999997 66788887765
No 64
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.25 E-value=11 Score=35.62 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=38.6
Q ss_pred CCCCCCCCeeeeCccchHHHHHHHHhhhCChhhhhhcCCCCCC
Q psy1374 221 PKRRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRGKQNRN 263 (263)
Q Consensus 221 ~r~~RplsTViLd~~~ke~ll~Di~eFL~s~~WY~~RGIPYRR 263 (263)
.+|.=..+.|.--+++|+.|...|..+|...++|...|||+.|
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~pr 216 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPK 216 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCC
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC
Confidence 4667778888889999999999999999999999999999875
No 65
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=39.86 E-value=10 Score=28.99 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=18.9
Q ss_pred CChhhHHHHHHHhhhcchhhhhhhhhhhhhhh
Q psy1374 42 QDVDNASKFADQAKKKKNFRRKKKKKTKKKKK 73 (263)
Q Consensus 42 ~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 73 (263)
...++....|+.++++..... -+|++||.||
T Consensus 73 ~K~~ll~~Ia~~I~~~r~r~~-~~~~~~~~~~ 103 (104)
T 1kvn_A 73 TKTKLMIELARKIAEIREQKR-EQKKDKKKKK 103 (104)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH-HSCHHHHSSC
T ss_pred CHHHHHHHHHHHHHHhhcccc-ccCccccccC
Confidence 345667778889998876444 4444444443
No 66
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=36.00 E-value=14 Score=29.85 Aligned_cols=33 Identities=18% Similarity=0.123 Sum_probs=27.9
Q ss_pred CccccccCCCccc--eEEEeCCCCHHHHHHHHHHhcC
Q psy1374 8 ILDPALVRPGRVD--LKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 8 ~lD~AliRpGR~d--~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
.++++|.+ |++ ..|+|+.|+.+++.+++..++.
T Consensus 154 ~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~ 188 (242)
T 3bos_A 154 FVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAA 188 (242)
T ss_dssp CCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHH
T ss_pred Hhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHH
Confidence 56788887 665 8999999999999999988763
No 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.40 E-value=14 Score=31.63 Aligned_cols=38 Identities=5% Similarity=-0.074 Sum_probs=32.4
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
++||.++.|+++|.. |+. .+.|+.|+.+++.+++....
T Consensus 142 l~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 142 FACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp EEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHH
T ss_pred EEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHH
Confidence 368899999999987 444 89999999999999998765
No 68
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=33.82 E-value=24 Score=24.40 Aligned_cols=18 Identities=6% Similarity=-0.142 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHhcCC
Q psy1374 26 GFCSRHQLEQMYKRFYQD 43 (263)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ 43 (263)
|+||.+++.+||+.++..
T Consensus 1 plPd~~~R~~Il~~~l~~ 18 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRK 18 (78)
T ss_dssp CCCCHHHHHHHHHHHHTT
T ss_pred CcCCHHHHHHHHHHHhcC
Confidence 689999999999999875
No 69
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.55 E-value=20 Score=33.94 Aligned_cols=31 Identities=13% Similarity=0.183 Sum_probs=27.6
Q ss_pred CccchHHHHHHHHhhhCChhhhhhcCCCCCC
Q psy1374 233 DSGVADRILADIRQFVADPAWYLDRGKQNRN 263 (263)
Q Consensus 233 d~~~ke~ll~Di~eFL~s~~WY~~RGIPYRR 263 (263)
=+++|+.|...|..+|...+||...|||+.|
T Consensus 187 ld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~pr 217 (437)
T 4b4t_I 187 LESQIQEIKESVELPLTHPELYEEMGIKPPK 217 (437)
T ss_dssp CHHHHHHHHHHHHHHHHCCHHHHHHTCCCCS
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC
Confidence 3568999999999999999999999999875
No 70
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=28.33 E-value=89 Score=23.40 Aligned_cols=45 Identities=11% Similarity=0.061 Sum_probs=34.1
Q ss_pred ecCChHHHHHHHHHHHHHHHHhcCCcEEEEecCCCCeeeCCCCCCCCCCCeeeeCccchHHHHH
Q psy1374 179 FGRDRSLFFNILEEARTLALKQYEGKTVMYTALGSEWRPFGHPKRRRPLNSVVLDSGVADRILA 242 (263)
Q Consensus 179 lg~s~~~l~~lL~ear~~~~~~~~~~t~Iy~~~~~~W~~~g~~r~~RplsTViLd~~~ke~ll~ 242 (263)
+|-|+.-+..+|..|++.|... =.| ..|.++ +|+|++.+...+..
T Consensus 44 lGiSR~~VsrlL~~Ar~~~~~~-------~~P--~g~~rv----------~v~lP~~~a~~v~~ 88 (101)
T 2w7n_A 44 LGLTRGAVSQAVHRVWAAFEDK-------NLP--EGYARV----------TAVLPEHQAYIVRK 88 (101)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHT-------CCC--TTEEEE----------EEEECHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHhcc-------CCC--CCeeEE----------eeecCHHHHHHHHH
Confidence 6788999999999999998641 023 359987 69999988755543
No 71
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=26.98 E-value=20 Score=31.22 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=28.0
Q ss_pred CccccccCCCccc--eEEEeCCCCHHHHHHHHHHhcC
Q psy1374 8 ILDPALVRPGRVD--LKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 8 ~lD~AliRpGR~d--~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
.+|++|.+ |++ ..+.|+. +.+++.+++..++.
T Consensus 147 ~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~ 180 (324)
T 1l8q_A 147 GVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLK 180 (324)
T ss_dssp TSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHH
T ss_pred HhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHH
Confidence 68999997 887 7899999 99999999988763
No 72
>2p8i_A Putative dioxygenase; YP_555069.1, structural genomics, JOIN for structural genomics, JCSG, protein structure initiative oxidoreductase; HET: MSE CIT; 1.40A {Burkholderia xenovorans} SCOP: d.58.55.1 PDB: 2nyh_A*
Probab=26.91 E-value=23 Score=27.61 Aligned_cols=80 Identities=13% Similarity=0.193 Sum_probs=47.2
Q ss_pred ccceEEEeCCCCHHHHHHHHHHhcCChhhHHHHHHHhhhcchhhhhhhhhhhhhhhhHHHHHHHhhheEEEEEEeCCChh
Q psy1374 18 RVDLKEYIGFCSRHQLEQMYKRFYQDVDNASKFADQAKKKKNFRRKKKKKTKKKKKKKKTKKKNRRHYMITLEIPCRDKS 97 (263)
Q Consensus 18 R~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~I~~~D~~ 97 (263)
=.|.||+|+..+.+++.+|-.. .+++|.+.+.-. .+-...+-=+-+-+-+|.-..+.
T Consensus 12 ~yHaHVYfd~~~~~~A~~Lre~------i~~~F~~~l~vg-----------------r~~~~pVGPHp~~s~qv~f~~~~ 68 (117)
T 2p8i_A 12 SWHAHVYFDASSRDAAWTLREQ------IEAHWSGKLQLG-----------------RFHERPVGPHPMWSYQLAFTQEQ 68 (117)
T ss_dssp EEEEEEEECGGGHHHHHHHHHH------HHHHTTTCSEEC-----------------CCBSSCCTTCSSEEEEEEECHHH
T ss_pred ceEEEEecCHHHHHHHHHHHHH------HHHhccccEeEe-----------------cCccccCCCCCCceEEEEcCHHH
Confidence 6789999987777666665542 233343211111 01111233355666777778889
Q ss_pred HHHHHHHHhhcCCCceeEEEEEe
Q psy1374 98 YHWLLHWITVRGAKKTQHLSVET 120 (263)
Q Consensus 98 Y~~vm~Wls~q~~~~sr~l~v~t 120 (263)
|..++.||..+...-|=-+-..|
T Consensus 69 f~~~v~WL~~nrg~LsVLiHP~T 91 (117)
T 2p8i_A 69 FADLVGWLTLNHGALDIFLHPNT 91 (117)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHHHhCCCCeEEEcCCC
Confidence 99999999987754333344444
No 73
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.82 E-value=31 Score=32.39 Aligned_cols=41 Identities=10% Similarity=-0.044 Sum_probs=33.7
Q ss_pred CCCCCCeeeeCccchHHHHHHHHhhhCChhhhhhcCCCCCC
Q psy1374 223 RRRPLNSVVLDSGVADRILADIRQFVADPAWYLDRGKQNRN 263 (263)
Q Consensus 223 ~~RplsTViLd~~~ke~ll~Di~eFL~s~~WY~~RGIPYRR 263 (263)
|.=..+.|.==+++|+.|...|..+|....||...|||+.|
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~pr 207 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPR 207 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCc
Confidence 33345555556779999999999999999999999999876
No 74
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=25.07 E-value=23 Score=30.80 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=31.0
Q ss_pred CCCCCC---CCccccccCCCccc-eEEEeCCCCHHHHHHHHHHhc
Q psy1374 1 MSTQAL---TILDPALVRPGRVD-LKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 1 mtTN~~---~~lD~AliRpGR~d-~~i~~~~~~~~~~~~~~~~~~ 41 (263)
++||.+ +.+++++.+ |+. ..|.|+.++.+++.+++...+
T Consensus 168 ~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 168 GITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp EEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred EEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 356766 578888887 554 589999999999999998754
No 75
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=23.44 E-value=17 Score=36.77 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=24.9
Q ss_pred ccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 9 LDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 9 lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
+.|+|+ +|+|..|.|..++.+++..|+.+++
T Consensus 740 f~~~l~--~Rl~~~i~~~pl~~edi~~i~~~~l 770 (854)
T 1qvr_A 740 FRPEFL--NRLDEIVVFRPLTKEQIRQIVEIQL 770 (854)
T ss_dssp SCHHHH--HTCSBCCBCCCCCHHHHHHHHHHHH
T ss_pred CCHHHH--HhcCeEEeCCCCCHHHHHHHHHHHH
Confidence 344444 6999999999999999999988765
No 76
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=22.75 E-value=33 Score=29.91 Aligned_cols=38 Identities=13% Similarity=0.160 Sum_probs=32.5
Q ss_pred CCCCCCCCccccccCCCccceEEEeCCCCHHHHHHHHHHhc
Q psy1374 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFY 41 (263)
Q Consensus 1 mtTN~~~~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~~~ 41 (263)
++||.++.++++|.. |. ..+.|+.++.++..+++..++
T Consensus 154 l~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 154 LATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp EEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHH
T ss_pred EEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHH
Confidence 367888999999987 55 689999999999999998776
No 77
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.99 E-value=85 Score=22.89 Aligned_cols=19 Identities=21% Similarity=0.636 Sum_probs=16.8
Q ss_pred EeCCChhHHHHHHHHhhcC
Q psy1374 91 IPCRDKSYHWLLHWITVRG 109 (263)
Q Consensus 91 I~~~D~~Y~~vm~Wls~q~ 109 (263)
|.+.+..|..++.|+...+
T Consensus 65 v~~E~~vf~av~~Wv~~d~ 83 (105)
T 2eqx_A 65 VPCSQNPTEAIEAWINFNK 83 (105)
T ss_dssp EETTSCHHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHcCH
Confidence 7899999999999998554
No 78
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=20.45 E-value=34 Score=24.62 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=26.8
Q ss_pred CccccccCCCccceEEEeCCCCHHHHHHHHHH
Q psy1374 8 ILDPALVRPGRVDLKEYIGFCSRHQLEQMYKR 39 (263)
Q Consensus 8 ~lD~AliRpGR~d~~i~~~~~~~~~~~~~~~~ 39 (263)
.|..||-|.|--.++|.++.-..+|+++++..
T Consensus 37 elekalaragarnvqitisaendeqakellel 68 (96)
T 2jvf_A 37 ELEKALARAGARNVQITISAENDEQAKELLEL 68 (96)
T ss_dssp HHHHHHHHHTCSEEEEEEECSSHHHHHHHHHH
T ss_pred HHHHHHHhccccceEEEEEecChHHHHHHHHH
Confidence 36788899999999999999888898888753
No 79
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=20.37 E-value=15 Score=34.15 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=28.4
Q ss_pred ccccccCCCccc--eEEEeCCCCHHHHHHHHHHhcC
Q psy1374 9 LDPALVRPGRVD--LKEYIGFCSRHQLEQMYKRFYQ 42 (263)
Q Consensus 9 lD~AliRpGR~d--~~i~~~~~~~~~~~~~~~~~~~ 42 (263)
|+++|+. |++ ..+.++.|+.+++.+++.....
T Consensus 244 l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~ 277 (440)
T 2z4s_A 244 FQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLE 277 (440)
T ss_dssp CCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 8999998 886 8899999999999999988763
Done!