RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1374
(263 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 39.4 bits (92), Expect = 2e-04
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNASKF 50
+T +LDPAL+RPGR D + +G EQ+ K + V A
Sbjct: 155 AATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI 204
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 37.9 bits (88), Expect = 7e-04
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNASK--FADQAKKKK 58
+T ILDPAL+RPGR D + I EQ+ + + A A AK+
Sbjct: 152 AATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTP 211
Query: 59 NF 60
F
Sbjct: 212 GF 213
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 32.9 bits (74), Expect = 0.026
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNA 47
+T I+DPA++RPGR+D YI + K + A
Sbjct: 151 GATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA 197
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 29.9 bits (67), Expect = 0.32
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 11/67 (16%)
Query: 20 DLKEYIGF----CSRHQLEQMYKRFYQDVDNASKFADQAKKKKNFRRKKKKKTKKKKKKK 75
+L +Y F S + F QA K+ RR+ ++K ++ K K
Sbjct: 272 ELGDYFVFDPKKLSVEEFFMDLHNFRNMFL-------QAVKENQKRRETEEKMRRAKLAK 324
Query: 76 KTKKKNR 82
+ +K R
Sbjct: 325 EKAEKER 331
>d2zjro1 b.155.1.1 (O:5-98) Ribosomal protein L21p {Deinococcus
radiodurans [TaxId: 1299]}
Length = 94
Score = 27.1 bits (60), Expect = 0.77
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 53 QAKKKKNFRRKKKKKTKKKKKKKKTKKKNRRHYMITLEI 91
QA+ ++ R KK K K + ++ R ++I
Sbjct: 53 QAEVVEHGRGKKIYIRKYKSGVQYRRRTGHRQNFTAIKI 91
>d2qamr1 b.155.1.1 (R:1-103) Ribosomal protein L21p {Escherichia
coli [TaxId: 562]}
Length = 103
Score = 27.4 bits (61), Expect = 0.77
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 53 QAKKKKNFRRKKKKKTKKKKKKKKTKKKNRRHYMITLEI 91
+A+ + R +K K K +++K K++ R + ++I
Sbjct: 60 KAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKI 98
>d1uw0a_ g.39.1.12 (A:) DNA ligase III {Human (Homo sapiens) [TaxId:
9606]}
Length = 117
Score = 26.9 bits (59), Expect = 1.3
Identities = 5/32 (15%), Positives = 12/32 (37%)
Query: 49 KFADQAKKKKNFRRKKKKKTKKKKKKKKTKKK 80
+ ++ + ++ K KKK + K
Sbjct: 83 EDNEKEQITQHIADLSSKAAGTPKKKAVVQAK 114
>d2j01v1 b.155.1.1 (V:1-101) Ribosomal protein L21p {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 26.3 bits (58), Expect = 1.6
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 53 QAKKKKNFRRKKKKKTKKKKKKKKTKKKNRRHYMITLEI 91
A+ + R KK +K K K + +KK R L I
Sbjct: 58 VAEVLGHGRGKKILVSKFKAKVQYRRKKGHRQPYTELLI 96
>d1wvka_ g.82.1.1 (A:) Expressed protein At2g23090/F21P24.15
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 86
Score = 25.9 bits (57), Expect = 1.9
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 57 KKNFRRKKKKKTKKKKKKKKTKKKN 81
K R K + K K + N
Sbjct: 16 KSAMARAKNLEKAKAAGKGSQLEAN 40
>d1v3ya_ d.167.1.1 (A:) Peptide deformylase {Thermus thermophilus
[TaxId: 274]}
Length = 182
Score = 26.6 bits (58), Expect = 2.3
Identities = 12/67 (17%), Positives = 27/67 (40%), Gaps = 5/67 (7%)
Query: 15 RPGRVDLK--EYIGFCSRHQLEQMYKRFYQ---DVDNASKFADQAKKKKNFRRKKKKKTK 69
R R+ ++ + G +LE R +Q D + F ++ K K + + +
Sbjct: 115 RAERIRVEYQDEEGRGRVLELEGYMARVFQHEIDHLDGILFFERLPKPKREAFLEANRAE 174
Query: 70 KKKKKKK 76
+ +K+
Sbjct: 175 LVRFQKE 181
>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 319
Score = 26.8 bits (58), Expect = 2.5
Identities = 9/90 (10%), Positives = 24/90 (26%)
Query: 1 MSTQALTILDPALVRPGRVDLKEYIGFCSRHQLEQMYKRFYQDVDNASKFADQAKKKKNF 60
+ + L L A VD + + ++ + K +
Sbjct: 91 LGNKFLDDLRMASALIHVVDATGKTDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGW 150
Query: 61 RRKKKKKTKKKKKKKKTKKKNRRHYMITLE 90
+ K+ +K K + ++ +
Sbjct: 151 DKFAKRIKLQKIKLESAIAEHLSGIGVNEN 180
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 219
Score = 26.7 bits (58), Expect = 2.9
Identities = 23/193 (11%), Positives = 50/193 (25%), Gaps = 32/193 (16%)
Query: 22 KEYIGF-CSRHQLEQMYKRFYQDVDNASKFADQAKKKKNFRRKKKKKTKKKKK------- 73
E GF L Q + ++N+ D N + ++
Sbjct: 11 PELAGFPNPARALYQTVREL---IENSLDATDVHGILPNIKITIDLIDDARQIYKVNVVD 67
Query: 74 ------KKKTKKKNRRHYMITLEIPCRDKSYHWLLHWITVRGAKKTQ--HLSVETSFEKF 125
++ R + + + + + L V ++ Q + +ETS
Sbjct: 68 NGIGIPPQEVPNAFGRVLYSSKYVNRQTRGMYGLGVKAAVLYSQMHQDKPIEIETSPVNS 127
Query: 126 DTGYVKTKYDFIPSIGTHLFSYQGNWIRVERSRESTTLDIQQGIPWETVTLTAFGRDRSL 185
Y I E +++ +G +V ++ G
Sbjct: 128 KRIYTFKLKIDINKNEPI-------------IVERGSVENTRGFHGTSVAISIPGDWPKA 174
Query: 186 FFNILEEARTLAL 198
I E + +
Sbjct: 175 KSRIYEYIKRTYI 187
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 93
Score = 25.2 bits (55), Expect = 3.3
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 62 RKKKKKTKKKKKKKKTKKKNRRHYMI 87
R+ KK+T +KKK K+ YM
Sbjct: 5 REPKKRTTRKKKDPNAPKRALSAYMF 30
>d1wd3a1 b.29.1.21 (A:19-337) Alpha-L-arabinofuranosidase B,
N-terminal domain {Aspergillus kawachii [TaxId: 40384]}
Length = 319
Score = 26.3 bits (58), Expect = 4.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 146 SYQGNWIRVERSRESTTLDI 165
S+ G +++R + TT I
Sbjct: 26 SFSGALYQLQRGSDDTTTTI 45
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1, PARP-1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 25.2 bits (55), Expect = 4.7
Identities = 6/39 (15%), Positives = 16/39 (41%)
Query: 49 KFADQAKKKKNFRRKKKKKTKKKKKKKKTKKKNRRHYMI 87
+ + ++F + ++KT K K ++ Y +
Sbjct: 86 QMPSKEDAIEHFMKLYEEKTGNAWHSKNFTKYPKKFYPL 124
>d1fpwa_ a.39.1.5 (A:) Frequenin (neuronal calcium sensor 1)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 190
Score = 25.5 bits (55), Expect = 5.9
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 20 DLKEYIGFCSRHQLEQMYKRFYQDVDN 46
LK+ F R +++Q +K F +D +
Sbjct: 15 CLKQSTYF-DRREIQQWHKGFLRDCPS 40
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 25.8 bits (56), Expect = 6.1
Identities = 1/19 (5%), Positives = 5/19 (26%)
Query: 8 ILDPALVRPGRVDLKEYIG 26
+ + R + +
Sbjct: 241 KIVELVKEASRSNSTSLVI 259
>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H
nitroreductase {Escherichia coli, minor form, NfnB
[TaxId: 562]}
Length = 216
Score = 25.3 bits (54), Expect = 7.4
Identities = 10/48 (20%), Positives = 17/48 (35%), Gaps = 3/48 (6%)
Query: 187 FNILEEARTLALKQYEGKTVMYTALG---SEWRPFGHPKRRRPLNSVV 231
F+ LK+ +++ +G E PK R P N +
Sbjct: 166 FDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITL 213
>d2hkja2 d.14.1.3 (A:307-470) Topoisomerase VI-B subunit {Archaeon
Sulfolobus shibatae [TaxId: 2286]}
Length = 164
Score = 25.1 bits (55), Expect = 8.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 62 RKKKKKTKKKKKKKKTKKK 80
RK K+ +K+K+++ KKK
Sbjct: 143 RKLKQYLSEKRKEQEAKKK 161
>d2c6ja1 a.264.1.1 (A:15-308) Duffy receptor, alpha form {Plasmodium
knowlesi [TaxId: 5850]}
Length = 294
Score = 25.4 bits (55), Expect = 8.7
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 55 KKKKNFRRKKKKKTKKKKKKKKTKKKNRRHY 85
+KKK + K + KK +K + Y
Sbjct: 230 RKKKQWDVLSTKFSSVKKTQKIGTENIATAY 260
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus
thermophilus [TaxId: 274]}
Length = 125
Score = 24.4 bits (53), Expect = 9.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 57 KKNFRRKKKKKTKKKKKKKKTKK 79
+ N R +K + KKK +K
Sbjct: 103 RTNARTRKGPRKTVAGKKKAPRK 125
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.135 0.409
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,019,229
Number of extensions: 48264
Number of successful extensions: 540
Number of sequences better than 10.0: 1
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 84
Length of query: 263
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 179
Effective length of database: 1,254,276
Effective search space: 224515404
Effective search space used: 224515404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.0 bits)