BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13740
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3P8M|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
pdb|3P8M|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide Dimerized By Leucine Zipper
Length = 92
Score = 104 bits (260), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 64/92 (69%)
Query: 37 GTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCI 96
G+ M+D IK DM++ MQ + A A EK +++IAAY+K F++++ P W CI
Sbjct: 1 GSHMSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCI 60
Query: 97 VGTNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
VG NFG+YV++E++ FIYFYLGQ +LLF++G
Sbjct: 61 VGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 92
>pdb|2PG1|A Chain A, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|B Chain B, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|C Chain C, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|D Chain D, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|3DVT|A Chain A, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|B Chain B, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|C Chain C, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|D Chain D, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|E Chain E, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
pdb|3DVT|F Chain F, Biochemical And Structural Characterization Of The Pak1-
Lc8 Interaction
Length = 91
Score = 103 bits (258), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%)
Query: 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
M+D IK DM+++MQ + A A EK +++IAAY+K F++++ P W CIVG
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 62
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
NFG+YV++E+R FIYFYLGQ +LLF++G
Sbjct: 63 NFGSYVTHETRHFIYFYLGQVAILLFKSG 91
>pdb|1RHW|A Chain A, The Solution Structure Of The Ph-Induced Monomer Of Dynein
Light Chain Lc8 From Drosophila
pdb|2P2T|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 Bound To
Residues 123-138 Of Intermediate Chain Ic74
pdb|3E2B|A Chain A, Crystal Structure Of Dynein Light Chain Lc8 In Complex
With A Peptide Derived From Swallow
pdb|3BRI|A Chain A, Crystal Structure Of Apo-Lc8
pdb|3FM7|E Chain E, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|F Chain F, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3GLW|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 89
Score = 103 bits (258), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 63/89 (70%)
Query: 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
M+D IK DM+++MQ + A A EK +++IAAY+K F++++ P W CIVG
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
NFG+YV++E+R FIYFYLGQ +LLF++G
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKSG 89
>pdb|3BRL|A Chain A, Crystal Structure Of Lc8 S88e SWA
Length = 89
Score = 103 bits (257), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 62/89 (69%)
Query: 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
M+D IK DM+++MQ + A A EK +++IAAY+K F++++ P W CIVG
Sbjct: 1 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
NFG+YV++E+R FIYFYLGQ +LLF+ G
Sbjct: 61 NFGSYVTHETRHFIYFYLGQVAILLFKEG 89
>pdb|3DVH|A Chain A, Lc8 Point Mutant K36p
pdb|3DVH|B Chain B, Lc8 Point Mutant K36p
pdb|3DVH|C Chain C, Lc8 Point Mutant K36p
pdb|3DVP|A Chain A, Pak1 Peptide Bound Lc8
pdb|3DVP|B Chain B, Pak1 Peptide Bound Lc8
Length = 91
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 62/89 (69%)
Query: 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
M+D IK DM+++MQ + A A EK + +IAAY+K F++++ P W CIVG
Sbjct: 3 MSDRKAVIKNADMSEEMQQDAVDCATQALEKYNIEPDIAAYIKKEFDKKYNPTWHCIVGR 62
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
NFG+YV++E+R FIYFYLGQ +LLF++G
Sbjct: 63 NFGSYVTHETRHFIYFYLGQVAILLFKSG 91
>pdb|1RE6|A Chain A, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
pdb|1RE6|B Chain B, Localisation Of Dynein Light Chains 1 And 2 And Their Pro-
Apoptotic Ligands
Length = 94
Score = 102 bits (254), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 1/94 (1%)
Query: 35 PQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWT 94
P G+ M+D IK DM++ MQ + A A EK +++IAAY+K F++++ P W
Sbjct: 2 PLGS-MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWH 60
Query: 95 CIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
CIVG NFG+YV++E++ FIYFYLGQ +LLF++G
Sbjct: 61 CIVGRNFGSYVTHETKHFIYFYLGQVAILLFKSG 94
>pdb|1PWJ|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
pdb|2XQQ|A Chain A, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|B Chain B, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|C Chain C, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte).
pdb|2XQQ|D Chain D, Human Dynein Light Chain (Dynll2) In Complex With An In
Vitro Evolved Peptide (Ac-Srgtqte)
Length = 89
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 62/89 (69%)
Query: 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
M+D IK DM++ MQ + A A EK +++IAAY+K F++++ P W CIVG
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
NFG+YV++E++ FIYFYLGQ +LLF++G
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89
>pdb|1F3C|A Chain A, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F3C|B Chain B, Refined Solution Structure Of 8kda Dynein Light Chain
(Dlc8)
pdb|1F95|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F95|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Bim
Peptide Complex
pdb|1F96|A Chain A, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
pdb|1F96|B Chain B, Solution Structure Of Dynein Light Chain 8 (Dlc8) And Nnos
Peptide Complex
Length = 89
Score = 100 bits (248), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 62/89 (69%)
Query: 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
M D IK DM+++MQ + A A EK +++IAA++K F++++ P W CIVG
Sbjct: 1 MCDRKAVIKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGR 60
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
NFG+YV++E++ FIYFYLGQ +LLF++G
Sbjct: 61 NFGSYVTHETKHFIYFYLGQVAILLFKSG 89
>pdb|1YO3|A Chain A, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|B Chain B, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
pdb|1YO3|C Chain C, 1.65 Angstrom Structure Of The Dynein Light Chain 1 From
Plasmodium Falciparum
Length = 102
Score = 99.0 bits (245), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 62/83 (74%)
Query: 46 AIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYV 105
+K VDMT++MQ I A A +K +++IAA++K F+R+++P W C+VG NFG+YV
Sbjct: 20 VVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYV 79
Query: 106 SYESRRFIYFYLGQTGVLLFRNG 128
++E++ FIYFY+GQ +LLF++G
Sbjct: 80 THETKNFIYFYIGQVAILLFKSG 102
>pdb|1PWK|A Chain A, Structure Of The Monomeric 8-Kda Dynein Light Chain And
Mechanism Of Domain Swapped Dimer Assembly
Length = 91
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 62/91 (68%), Gaps = 2/91 (2%)
Query: 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVG- 98
M+D IK DM++ MQ + A A EK +++IAAY+K F++++ P W CIVG
Sbjct: 1 MSDRKAVIKNADMSEDMQQDAVDCATQAMEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGR 60
Query: 99 -TNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
NFG+YV++E++ FIYFYLGQ +LLF++G
Sbjct: 61 SGNFGSYVTHETKHFIYFYLGQVAILLFKSG 91
>pdb|3RJS|A Chain A, Crystal Structure Of Dynein Light Chain 8a (Dlc8) From
Toxoplasma Gondii At 1.5 A Resolution
Length = 89
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 58/89 (65%)
Query: 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGT 99
M D IK DM + +Q I A A EK +++IAA++K F+R+ P W C+VG
Sbjct: 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGR 60
Query: 100 NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
NFG+YV++E+ FIYFY+GQ VLLF++G
Sbjct: 61 NFGSYVTHETHHFIYFYIGQVAVLLFKSG 89
>pdb|1CMI|A Chain A, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
pdb|1CMI|B Chain B, Structure Of The Human PinLC8 DIMER WITH A BOUND PEPTIDE
Length = 85
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 60/82 (73%)
Query: 47 IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
IK DM+++MQ + A A EK +++IAA++K F++++ P W CIVG NFG+YV+
Sbjct: 4 IKNADMSEEMQQDSVECATQALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 63
Query: 107 YESRRFIYFYLGQTGVLLFRNG 128
+E++ FIYFYLGQ +LLF++G
Sbjct: 64 HETKHFIYFYLGQVAILLFKSG 85
>pdb|4DS1|A Chain A, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
pdb|4DS1|C Chain C, The Structure Of A Yeast Dyn2-Nup159 Complex And The
Molecular Basis For The Dynein Light Chain - Nuclear
Pore Interaction
Length = 97
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 49/80 (61%)
Query: 47 IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
+K D+T K++ ++ +K A +K + +IA +K + + ++ W IVG NFG+YV+
Sbjct: 16 VKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVT 75
Query: 107 YESRRFIYFYLGQTGVLLFR 126
+E F+YFY+G L+F+
Sbjct: 76 HEKGHFVYFYIGPLAFLVFK 95
>pdb|2WNB|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In
Complex With Disaccharide And Cmp
pdb|2WNF|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase In
Complex With Gal-Beta-1-3galnac-Ortho-Nitrophenol
Length = 298
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 54 KKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWT 94
KK+ Y R +C ++ ++A+ RFNR +P+ T
Sbjct: 7 KKLXKYPYRPCTCT--RCIEEQRVSAWFDERFNRSXQPLLT 45
>pdb|2WML|A Chain A, Crystal Structure Of A Mammalian Sialyltransferase
Length = 298
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 54 KKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWT 94
KK+ Y R +C ++ ++A+ RFNR +P+ T
Sbjct: 7 KKLXKYPYRPCTCT--RCIEEQRVSAWFDERFNRSXQPLLT 45
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,315,467
Number of Sequences: 62578
Number of extensions: 148728
Number of successful extensions: 303
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 287
Number of HSP's gapped (non-prelim): 15
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)