Query psy13740
Match_columns 185
No_of_seqs 115 out of 535
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 19:21:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00059 dynein light chain; P 100.0 3.4E-36 7.4E-41 224.1 12.7 89 40-128 2-90 (90)
2 KOG3430|consensus 100.0 7.5E-36 1.6E-40 223.2 11.9 89 40-128 1-90 (90)
3 PLN03058 dynein light chain ty 100.0 6.7E-35 1.5E-39 230.9 12.7 96 38-133 29-127 (128)
4 PF01221 Dynein_light: Dynein 100.0 4.7E-35 1E-39 215.9 10.6 89 40-128 1-89 (89)
5 PF04155 Ground-like: Ground-l 96.8 0.014 3.1E-07 41.7 8.5 54 72-126 22-76 (76)
6 PF05075 DUF684: Protein of un 76.8 22 0.00047 32.3 9.2 54 74-127 188-251 (345)
7 PF10703 MoaF: Molybdenum cofa 61.9 12 0.00026 33.5 4.1 45 92-139 182-227 (265)
8 PF15650 Tox-REase-9: Restrict 53.4 11 0.00024 28.7 2.1 19 80-98 69-87 (89)
9 PF12006 DUF3500: Protein of u 33.2 2.1E+02 0.0046 25.8 7.5 45 45-89 214-261 (313)
10 PRK00286 xseA exodeoxyribonucl 32.9 92 0.002 28.7 5.3 50 74-129 8-63 (438)
11 PF12652 CotJB: CotJB protein; 29.4 36 0.00078 25.0 1.6 17 76-92 40-56 (78)
12 PF06150 ChaB: ChaB; InterPro 29.2 1.8E+02 0.0039 20.0 5.0 44 50-94 7-54 (57)
13 cd03472 Rieske_RO_Alpha_BPDO_l 26.6 1.1E+02 0.0025 23.6 4.1 38 85-127 1-39 (128)
14 PF14900 DUF4493: Domain of un 23.2 1.6E+02 0.0036 24.6 4.7 37 83-119 119-160 (235)
15 PF12362 DUF3646: DNA polymera 21.8 1E+02 0.0022 24.2 2.9 29 74-102 48-76 (117)
16 COG5179 TAF1 Transcription ini 20.2 38 0.00082 34.5 0.3 86 76-162 480-602 (968)
No 1
>PTZ00059 dynein light chain; Provisional
Probab=100.00 E-value=3.4e-36 Score=224.12 Aligned_cols=89 Identities=47% Similarity=0.958 Sum_probs=86.7
Q ss_pred CCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCC
Q psy13740 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQ 119 (185)
Q Consensus 40 Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~ 119 (185)
|++.+++|+.+|||++||++|++++.+|+++|+.+++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus 2 m~~~~~~i~~~dM~~emq~~a~~~~~~Al~~~~~~kdiA~~IK~~fD~~yg~~WhciVG~~Fgs~vthe~~~~i~F~~~~ 81 (90)
T PTZ00059 2 MSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQ 81 (90)
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhhcCCCCEEEEecCeeEEEEEeCCcEEEEEECC
Confidence 67778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy13740 120 TGVLLFRNG 128 (185)
Q Consensus 120 ~a~LLwKT~ 128 (185)
++|||||++
T Consensus 82 ~~vLlfK~~ 90 (90)
T PTZ00059 82 VAILLFKSG 90 (90)
T ss_pred EEEEEEecC
Confidence 999999985
No 2
>KOG3430|consensus
Probab=100.00 E-value=7.5e-36 Score=223.25 Aligned_cols=89 Identities=43% Similarity=0.852 Sum_probs=86.3
Q ss_pred CCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeC
Q psy13740 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCT-SQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLG 118 (185)
Q Consensus 40 Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~-~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig 118 (185)
|++.+++|+.+|||++||++|+++|++|+++|+ ++++||..||++||++||++||||||++|||+|||++++||||++|
T Consensus 1 ~~~~~~~vk~tDM~~~mq~~a~~~a~~al~~f~~~~k~iA~~iKkefDkkyG~~WhcivG~~FGs~vThe~g~Fiyf~~g 80 (90)
T KOG3430|consen 1 MLERKAVVKATDMPEEMQQEAIELARQALEKFNVIEKDIAAFIKKEFDKKYGPTWHCIVGRNFGSYVTHETGHFIYFYLG 80 (90)
T ss_pred CCCccceEecCCCChHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhcCCccEEEEcCCcceEEEeecCcEEEEEec
Confidence 567889999999999999999999999999999 7899999999999999999999999999999999999999999999
Q ss_pred CEEEEEEecC
Q psy13740 119 QTGVLLFRNG 128 (185)
Q Consensus 119 ~~a~LLwKT~ 128 (185)
.++|||||+.
T Consensus 81 ~l~illfK~~ 90 (90)
T KOG3430|consen 81 VLAILLFKCA 90 (90)
T ss_pred eEEEEEEecC
Confidence 9999999984
No 3
>PLN03058 dynein light chain type 1 family protein; Provisional
Probab=100.00 E-value=6.7e-35 Score=230.85 Aligned_cols=96 Identities=29% Similarity=0.581 Sum_probs=90.3
Q ss_pred CCCCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcC---ChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEE
Q psy13740 38 TLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCT---SQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIY 114 (185)
Q Consensus 38 ~~Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~---~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~ 114 (185)
-+..+.++.|+.+|||.+||++|+++|..||++++ ++++||.+||++||++|||+||||||++|||+|||++++|||
T Consensus 29 ~~~~~~dv~Ik~sDM~~emQ~~ave~a~~Al~k~~~~~~ekdIA~~IKk~fDkkYG~tWHCIVGk~FGs~VTHe~~~fIy 108 (128)
T PLN03058 29 DQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDSAYGPAWHCIVGTSFGSYVTHSTGGFLY 108 (128)
T ss_pred hhccCCCCEEEECCCCHHHHHHHHHHHHHHHHHccccCCHHHHHHHHHHHHhhhhCCceEEEECCcEEEEEEEcCCcEEE
Confidence 34566899999999999999999999999999974 679999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEEEecCCChhh
Q psy13740 115 FYLGQTGVLLFRNGSILHD 133 (185)
Q Consensus 115 F~ig~~a~LLwKT~~~~~~ 133 (185)
|++|+++||||||+.++.+
T Consensus 109 F~ig~~aiLLfKt~~~~~~ 127 (128)
T PLN03058 109 FSIDKVYILLFKTAVEPLD 127 (128)
T ss_pred EEECCEEEEEEeccCccCC
Confidence 9999999999999998765
No 4
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=100.00 E-value=4.7e-35 Score=215.87 Aligned_cols=89 Identities=36% Similarity=0.746 Sum_probs=84.9
Q ss_pred CCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCC
Q psy13740 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQ 119 (185)
Q Consensus 40 Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~ 119 (185)
|++.+++|+.+|||++||++|+++|.+|+++++++++||++||+.||++|||+||||||++||+++||++++++||++++
T Consensus 1 m~~~~~~i~~~dM~~~~~~~~~~~~~~a~~~~~~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~th~~~~~~~f~~~~ 80 (89)
T PF01221_consen 1 MSENKIVIKSSDMPEEMQEEAIELAKEALKKYQDEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSVTHEPGTFLYFKIGN 80 (89)
T ss_dssp SGSCSEEEEEEES-HHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEEEEETTEEEEEEETT
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCceEEEECCcEEEEEEEcCCcEEEEEECC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy13740 120 TGVLLFRNG 128 (185)
Q Consensus 120 ~a~LLwKT~ 128 (185)
++||||||+
T Consensus 81 ~~~li~kt~ 89 (89)
T PF01221_consen 81 IAFLIFKTQ 89 (89)
T ss_dssp EEEEEEEE-
T ss_pred EEEEEEecC
Confidence 999999985
No 5
>PF04155 Ground-like: Ground-like domain; InterPro: IPR007284 This group of proteins contain one or more copies of the ground-like domain, which are specific to Caenorhabditis elegans and Caenorhabditis briggsae. It has been proposed that the ground-like domain containing proteins may bind and modulate the activity of Patched-like membrane molecules, reminiscent of the modulating activities of neuropeptides [].
Probab=96.77 E-value=0.014 Score=41.74 Aligned_cols=54 Identities=11% Similarity=0.132 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHhcccCCCceEEEEeC-CceeeEEEccCcEEEEEeCCEEEEEEe
Q psy13740 72 TSQEEIAAYLKNRFNRRFEPMWTCIVGT-NFGAYVSYESRRFIYFYLGQTGVLLFR 126 (185)
Q Consensus 72 ~~ekdIA~~IK~~LDkkYG~~WHCIVGk-sFGS~VTHe~~~fI~F~ig~~a~LLwK 126 (185)
.+...+++.|...+.++||+.+-|||++ +|...+... ..|--...+++..++|+
T Consensus 22 ~~~~~s~~~Iq~~~e~~f~~~f~vIcs~~~Fsy~~~~~-~~~C~~~~~g~~c~af~ 76 (76)
T PF04155_consen 22 CNLSISKRAIQKAAEKRFGGSFEVICSEGDFSYSTHTD-DLYCKVEKNGVTCLAFA 76 (76)
T ss_pred CCHHHHHHHHHHHHHHHhCCCEEEEEeCCCceeEEecc-cceeeeeeCCEEEEEEC
Confidence 5668899999999999999999999999 666665555 77888899999999985
No 6
>PF05075 DUF684: Protein of unknown function (DUF684); InterPro: IPR007767 This family contains uncharacterised proteins from Caenorhabditis elegans.
Probab=76.81 E-value=22 Score=32.27 Aligned_cols=54 Identities=20% Similarity=0.366 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcccCCC-ceEEEEeC--------CceeeEEEccCcEEE-EEeCCEEEEEEec
Q psy13740 74 QEEIAAYLKNRFNRRFEP-MWTCIVGT--------NFGAYVSYESRRFIY-FYLGQTGVLLFRN 127 (185)
Q Consensus 74 ekdIA~~IK~~LDkkYG~-~WHCIVGk--------sFGS~VTHe~~~fI~-F~ig~~a~LLwKT 127 (185)
..+.|..||+.||+..-. .+-+||-. .|.....+....+|. |.-|+..++||||
T Consensus 188 n~eKAd~Ik~~Le~ilTnDsFYIiVfd~~~~~~~~~~y~~~~~~~dq~I~s~~rGgcNv~VYRS 251 (345)
T PF05075_consen 188 NEEKADEIKKKLEKILTNDSFYIIVFDDCSGYDNHYYYGFYDNNEDQYIESFNRGGCNVFVYRS 251 (345)
T ss_pred hHHHHHHHHHHHHhhCCCCcEEEEEecccccCCccceeeeccCcccCEEEEEeCCCeEEEEEee
Confidence 468999999999996543 58888832 122222344555555 5679999999999
No 7
>PF10703 MoaF: Molybdenum cofactor biosynthesis protein F; InterPro: IPR024724 Molybdenum cofactor biosynthesis protein F (MoaF) is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella []. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha []. MoaF is conserved in proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis.
Probab=61.86 E-value=12 Score=33.46 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=35.5
Q ss_pred ceEEEEeCCceeeEEEccCcEEEEEe-CCEEEEEEecCCChhhHHHHhh
Q psy13740 92 MWTCIVGTNFGAYVSYESRRFIYFYL-GQTGVLLFRNGSILHDIQMYLK 139 (185)
Q Consensus 92 ~WHCIVGksFGS~VTHe~~~fI~F~i-g~~a~LLwKT~~~~~~~~~~~~ 139 (185)
+|||+.|..=|-. +...+-++++ .++.++.|+=-..+...++-.|
T Consensus 182 ~W~CL~G~e~Gla---D~D~c~~~Ki~d~lYlf~WrEkiiPv~~vvliD 227 (265)
T PF10703_consen 182 AWQCLSGVEKGLA---DTDRCHYYKIADNLYLFTWREKIIPVLGVVLID 227 (265)
T ss_pred EEEEeeccccCCC---CccceEEEEecCCEEEEEEEecccceeEEEEEE
Confidence 5999999976654 4688889999 5999999998888777664444
No 8
>PF15650 Tox-REase-9: Restriction endonuclease fold toxin 9
Probab=53.42 E-value=11 Score=28.74 Aligned_cols=19 Identities=11% Similarity=0.312 Sum_probs=15.9
Q ss_pred HHHHHhcccCCCceEEEEe
Q psy13740 80 YLKNRFNRRFEPMWTCIVG 98 (185)
Q Consensus 80 ~IK~~LDkkYG~~WHCIVG 98 (185)
.-|++|...||.+|.|||-
T Consensus 69 ~Y~~el~~~~G~~W~~~l~ 87 (89)
T PF15650_consen 69 NYKQELEKIYGGGWKTRLE 87 (89)
T ss_pred HHHHHhcCccCCCeeEEee
Confidence 3467899999999999984
No 9
>PF12006 DUF3500: Protein of unknown function (DUF3500); InterPro: IPR021889 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 335 to 438 amino acids in length. This protein has a conserved GHH sequence motif. This protein has two completely conserved G residues that may be functionally important.
Probab=33.17 E-value=2.1e+02 Score=25.79 Aligned_cols=45 Identities=11% Similarity=0.214 Sum_probs=32.9
Q ss_pred cEEEeCCCCHHHHHHHHHHHHHHHHhcCChH--HHHHHH-HHHhcccC
Q psy13740 45 VAIKKVDMTKKMQTYVIRAAKVAFEKCTSQE--EIAAYL-KNRFNRRF 89 (185)
Q Consensus 45 i~I~~sDM~~eMq~~aie~a~eAl~ky~~ek--dIA~~I-K~~LDkkY 89 (185)
.=|..++|+.+.|+-+..++..-+..+..+. ..-..| +..||+.|
T Consensus 214 ~Gl~~s~Lt~~Qq~ll~~li~~y~~~~~~~~a~~~~~~i~~~~ld~t~ 261 (313)
T PF12006_consen 214 EGLAVSELTADQQELLLALIKEYLGRLPEEDAAERMAEIEEAGLDETY 261 (313)
T ss_pred CCcChhhCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhccccceE
Confidence 3478899999999999999998888777432 223344 66777665
No 10
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=32.94 E-value=92 Score=28.70 Aligned_cols=50 Identities=28% Similarity=0.595 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeC--CceeeEEEccCcEEEEEeC----CEEEEEEecCC
Q psy13740 74 QEEIAAYLKNRFNRRFEPMWTCIVGT--NFGAYVSYESRRFIYFYLG----QTGVLLFRNGS 129 (185)
Q Consensus 74 ekdIA~~IK~~LDkkYG~~WHCIVGk--sFGS~VTHe~~~fI~F~ig----~~a~LLwKT~~ 129 (185)
-.++..+||..|+..++..| |.|. +|-. -...++||.+. .+.+.+|++..
T Consensus 8 vsel~~~ik~~le~~~~~v~--v~gEis~~~~----~~sGH~Yf~Lkd~~a~i~~~~~~~~~ 63 (438)
T PRK00286 8 VSELNRYVKSLLERDLGQVW--VRGEISNFTR----HSSGHWYFTLKDEIAQIRCVMFKGSA 63 (438)
T ss_pred HHHHHHHHHHHHHhhCCcEE--EEEEeCCCee----CCCCeEEEEEEcCCcEEEEEEEcChh
Confidence 35889999999999988887 5555 5443 24556999983 58899999744
No 11
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=29.42 E-value=36 Score=25.02 Aligned_cols=17 Identities=24% Similarity=0.649 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcccCCCc
Q psy13740 76 EIAAYLKNRFNRRFEPM 92 (185)
Q Consensus 76 dIA~~IK~~LDkkYG~~ 92 (185)
..-..+++.+.++|||-
T Consensus 40 ~~~~~l~~~Ye~~yGPL 56 (78)
T PF12652_consen 40 KQRKQLKKEYEKRYGPL 56 (78)
T ss_pred HHHHHHHHHHHHHhCCC
Confidence 34567889999999994
No 12
>PF06150 ChaB: ChaB; InterPro: IPR009317 This family of proteins contain a conserved 60 residue region. This protein is known as ChaB in Escherichia coli and is found next to ChaA, which is a cation transporter protein. ChaB may be regulate ChaA function in some way.; PDB: 1SG7_A.
Probab=29.24 E-value=1.8e+02 Score=19.99 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=28.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCChH---HHH-HHHHHHhcccCCCceE
Q psy13740 50 VDMTKKMQTYVIRAAKVAFEKCTSQE---EIA-AYLKNRFNRRFEPMWT 94 (185)
Q Consensus 50 sDM~~eMq~~aie~a~eAl~ky~~ek---dIA-~~IK~~LDkkYG~~WH 94 (185)
..||..-|+--++....|++.|+++. .+| ..+|+.+.+ -|+.|.
T Consensus 7 ~~LP~~Aq~if~~afn~a~~~~~de~~A~~vAw~AVk~~Y~k-~~g~W~ 54 (57)
T PF06150_consen 7 EHLPEHAQRIFRKAFNSAWEEYGDEERAHRVAWAAVKRKYEK-VNGRWV 54 (57)
T ss_dssp TT--SHHHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHEEE-SSS-EE
T ss_pred hHCCHHHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHhee-cCCEee
Confidence 45777777777777788888887653 233 679999999 788896
No 13
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=26.64 E-value=1.1e+02 Score=23.59 Aligned_cols=38 Identities=18% Similarity=0.491 Sum_probs=27.3
Q ss_pred hcccCCCceEEEEeC-CceeeEEEccCcEEEEEeCCEEEEEEec
Q psy13740 85 FNRRFEPMWTCIVGT-NFGAYVSYESRRFIYFYLGQTGVLLFRN 127 (185)
Q Consensus 85 LDkkYG~~WHCIVGk-sFGS~VTHe~~~fI~F~ig~~a~LLwKT 127 (185)
|++-|...|+.|.=. .+. +++.+..+.+++..++|+++
T Consensus 1 ~~~i~~~~W~~v~~~~el~-----~~g~~~~~~~~~~~i~l~r~ 39 (128)
T cd03472 1 LERVFARSWLLLGHETHIP-----KAGDYLTTYMGEDPVIVVRQ 39 (128)
T ss_pred CcchhhCCCeEeEEHHHCC-----CCCCEEEEEECCceEEEEEC
Confidence 466788899986554 332 34566677889999999995
No 14
>PF14900 DUF4493: Domain of unknown function (DUF4493)
Probab=23.22 E-value=1.6e+02 Score=24.64 Aligned_cols=37 Identities=27% Similarity=0.569 Sum_probs=29.4
Q ss_pred HHhcccCCCceEEEEeCCceeeEEE--ccC---cEEEEEeCC
Q psy13740 83 NRFNRRFEPMWTCIVGTNFGAYVSY--ESR---RFIYFYLGQ 119 (185)
Q Consensus 83 ~~LDkkYG~~WHCIVGksFGS~VTH--e~~---~fI~F~ig~ 119 (185)
..|.+.|+..|+|-|...-+..+++ ... .-.||..+.
T Consensus 119 ~~f~~~f~~~y~vtV~~~~~~~~~~~~~~~~~~~~~Yf~~~~ 160 (235)
T PF14900_consen 119 DEFKKYFGSDYSVTVSTGAGGSVTFNKDETTSDRSAYFKAGE 160 (235)
T ss_pred HHHHhhhccceEEEEEccCCccEEEeeccCCCCcceEEECCC
Confidence 4466677777999999976888877 555 889999988
No 15
>PF12362 DUF3646: DNA polymerase III gamma and tau subunits C terminal; InterPro: IPR022107 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00004 from PFAM. The proteins in this family are frequently annotated as the gamma and tau subunits of DNA polymerase III, however there is little accompanying literature to back this up.
Probab=21.83 E-value=1e+02 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.333 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhcccCCCceEEEEeCCce
Q psy13740 74 QEEIAAYLKNRFNRRFEPMWTCIVGTNFG 102 (185)
Q Consensus 74 ekdIA~~IK~~LDkkYG~~WHCIVGksFG 102 (185)
..++|..|.+.|..--|..|.|.+++.=|
T Consensus 48 p~dl~~~L~~~L~~wTG~rW~V~~s~~~g 76 (117)
T PF12362_consen 48 PKDLAQRLSRKLQEWTGQRWIVSLSNEPG 76 (117)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 46899999999999999999999997644
No 16
>COG5179 TAF1 Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=20.23 E-value=38 Score=34.45 Aligned_cols=86 Identities=27% Similarity=0.435 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcc-----cCCC-----ceEEEEeC---CceeeEEEccCcEEE-----------EEe--CCEEEEEEecCC
Q psy13740 76 EIAAYLKNRFNR-----RFEP-----MWTCIVGT---NFGAYVSYESRRFIY-----------FYL--GQTGVLLFRNGS 129 (185)
Q Consensus 76 dIA~~IK~~LDk-----kYG~-----~WHCIVGk---sFGS~VTHe~~~fI~-----------F~i--g~~a~LLwKT~~ 129 (185)
.||..|-.+.-+ .|-| -.||.=.. .||-+-.-+||+.+- |.. ++.-||+-+-+.
T Consensus 480 GMas~l~nYYRK~NeqDe~rPKL~vge~hVLdvqD~SPFwnFG~VePG~i~ptLyNnmirAPvFKH~~~~TDflli~~sS 559 (968)
T COG5179 480 GMASLLNNYYRKSNEQDEYRPKLDVGEYHVLDVQDPSPFWNFGDVEPGTIIPTLYNNMIRAPVFKHSSGGTDFLLIVESS 559 (968)
T ss_pred hHHHHHHHHHHhcccccccccCCCcCceeecccCCCCcccCcCCCCCCcchHHHhhhhhhcchhcccCCCcceEEEEccC
Confidence 466666544433 2333 46665444 477777778887653 443 677899999888
Q ss_pred ChhhHHHHhhhhh-----------hhhccCCCccccCcccchhc
Q psy13740 130 ILHDIQMYLKSSA-----------EAKAKGPRKRKLRPDCKFAL 162 (185)
Q Consensus 130 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 162 (185)
.+.+..+||.+.| |.-+ |||+|++..-||-||
T Consensus 560 ~~G~~~~ylrnInhlf~vGQtFPveevp-gPhSRKvt~~~knRL 602 (968)
T COG5179 560 NSGEMSLYLRNINHLFCVGQTFPVEEVP-GPHSRKVTVFCKNRL 602 (968)
T ss_pred CCCceeeehhcCcceEeccccccccccC-CCcchhhHHHHhhhH
Confidence 8999999999876 3335 999999999998654
Done!