Query psy13740
Match_columns 185
No_of_seqs 115 out of 535
Neff 4.5
Searched_HMMs 29240
Date Fri Aug 16 19:21:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rjs_A Dynein light chain moto 100.0 1.6E-38 5.6E-43 235.1 9.3 89 40-128 1-89 (89)
2 4ds1_A Dynein light chain 1, c 100.0 6.5E-37 2.2E-41 230.2 10.2 86 43-128 12-97 (97)
3 1yo3_A Dynein light chain 1; s 100.0 2.6E-36 9E-41 229.0 10.9 89 40-128 14-102 (102)
4 4gup_A Major histocompatibilit 29.4 2.3E+02 0.0078 23.4 8.1 49 77-127 77-125 (271)
5 1use_A VAsp, vasodilator-stimu 26.4 85 0.0029 20.2 3.8 33 55-89 11-43 (45)
6 1u9d_A Hypothetical protein VC 19.4 2.9E+02 0.0099 20.7 6.2 47 23-71 50-96 (122)
7 3gzx_A Biphenyl dioxygenase su 19.3 2.1E+02 0.0073 25.6 6.4 45 79-128 44-89 (457)
8 2bmo_A Oxygenase-alpha NBDO; n 18.5 2.2E+02 0.0076 24.8 6.2 43 81-128 25-68 (447)
9 3e9v_A Protein BTG2; B-cell tr 17.1 1E+02 0.0035 23.3 3.1 43 51-94 1-48 (120)
10 3vca_A Ring-hydroxylating diox 16.1 2.7E+02 0.0093 24.5 6.2 46 79-129 30-76 (412)
No 1
>3rjs_A Dynein light chain motor protein; parasite, LC8, DLC8, TGDLC8, LIG PIN, DLC1, dynll1, transport protein; 1.50A {Toxoplasma gondii} PDB: 1pwj_A 2xqq_A 1re6_A 3p8m_A 3dvt_A 2pg1_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3brl_A 3dvh_A 3dvp_A 1pwk_A 1f3c_A 1f95_A 1f96_A ...
Probab=100.00 E-value=1.6e-38 Score=235.12 Aligned_cols=89 Identities=46% Similarity=0.911 Sum_probs=85.8
Q ss_pred CCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCC
Q psy13740 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQ 119 (185)
Q Consensus 40 Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~ 119 (185)
|++.+++|+.+|||++||++|+++|.+|+++|+.+++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus 1 m~~~k~~i~~~dM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fD~kyg~~WhciVG~~Fgs~vthe~~~fiyF~~g~ 80 (89)
T 3rjs_A 1 MADRKAVIKNADMPEDLQQDAIDCANQALEKYNIEKDIAAFIKKEFDRKHNPTWHCVVGRNFGSYVTHETHHFIYFYIGQ 80 (89)
T ss_dssp --CCCCEEEEEESCHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHCSCCEEEEESSCCCCCCEEEEEEEEEEETT
T ss_pred CCCCccEEEECCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHhcccCCCCEEEEecCeeEEEEEcCCcEEEEEECC
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy13740 120 TGVLLFRNG 128 (185)
Q Consensus 120 ~a~LLwKT~ 128 (185)
++|||||||
T Consensus 81 ~~iLlfKtg 89 (89)
T 3rjs_A 81 VAVLLFKSG 89 (89)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEecC
Confidence 999999996
No 2
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide binding, nucle structural protein-transport protein complex; 1.85A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-37 Score=230.20 Aligned_cols=86 Identities=31% Similarity=0.667 Sum_probs=84.6
Q ss_pred CCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCCEEE
Q psy13740 43 LPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGV 122 (185)
Q Consensus 43 ~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~~a~ 122 (185)
.+++|+.+|||++||++|+++|.+|+++|+++++||++||++||++|||+||||||++|||+|||++++||||++|+++|
T Consensus 12 ~k~~I~~~DM~~emq~~a~~~a~~al~~~~~ek~iA~~IK~~fDkkyG~~WhcIVG~~Fgs~vThe~~~fiyF~~g~~ai 91 (97)
T 4ds1_A 12 STPIVKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVTHEKGHFVYFYIGPLAF 91 (97)
T ss_dssp CCCEEEEEEECHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEEEEEEEEEEEECTTEEEEEEETTEEE
T ss_pred CccEEEECCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCccCCCCEEEEccCccEEEEEcCCcEEEEEECCEEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecC
Q psy13740 123 LLFRNG 128 (185)
Q Consensus 123 LLwKT~ 128 (185)
||||||
T Consensus 92 LlfKtg 97 (97)
T 4ds1_A 92 LVFKTA 97 (97)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999996
No 3
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub malaria, SGC, transport protein; 1.65A {Plasmodium falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A 2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A 1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Probab=100.00 E-value=2.6e-36 Score=228.97 Aligned_cols=89 Identities=44% Similarity=0.900 Sum_probs=83.8
Q ss_pred CCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCC
Q psy13740 40 MTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQ 119 (185)
Q Consensus 40 Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~ 119 (185)
+...+++|+.+|||++||++|+++|.+|+++|+++++||++||++||++|||+||||||++|||+|||++++||||++|+
T Consensus 14 ~~~~~~~I~~~DM~~emq~~a~~~a~~Al~k~~~ekdiA~~IK~~fDkkyG~~WHcIVG~~FGs~vThe~~~fiyF~~g~ 93 (102)
T 1yo3_A 14 LVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKYDPTWHCVVGRNFGSYVTHETKNFIYFYIGQ 93 (102)
T ss_dssp ----CCCEEETTSCHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHCSCEEEEESSSCCCEEESCCCEEEEEEETT
T ss_pred cCCCCCEEEECCCCHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHhhhcCCCCEEEEccCeeEEEEEeCCcEEEEEECC
Confidence 34468899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecC
Q psy13740 120 TGVLLFRNG 128 (185)
Q Consensus 120 ~a~LLwKT~ 128 (185)
++||||||+
T Consensus 94 ~aiLlfKt~ 102 (102)
T 1yo3_A 94 VAILLFKSG 102 (102)
T ss_dssp EEEEEEECC
T ss_pred EEEEEEecC
Confidence 999999985
No 4
>4gup_A Major histocompatibility complex class I-related protein; MHC class I-related protein, immune system; HET: 6FP; 3.20A {Homo sapiens}
Probab=29.35 E-value=2.3e+02 Score=23.40 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHHHhcccCCCceEEEEeCCceeeEEEccCcEEEEEeCCEEEEEEec
Q psy13740 77 IAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRN 127 (185)
Q Consensus 77 IA~~IK~~LDkkYG~~WHCIVGksFGS~VTHe~~~fI~F~ig~~a~LLwKT 127 (185)
--..|+..+++..+-+.|.+.|=.-+..- ..+.|..|.+++.-||.|-.
T Consensus 77 ~l~~l~~~~nqsg~HtlQ~m~GCEl~~dg--~~~g~~q~aYdGeDfl~fd~ 125 (271)
T 4gup_A 77 ELKRLQRHYNHSGSHTYQRMIGCELLEDG--STTGFLQYAYDGQDFLIFNK 125 (271)
T ss_dssp HHHHHHHHTTCCSCCEEEEEEEEEBCTTS--CBCCEEEEEETTEEEEEEET
T ss_pred hHhhhhhhcCCCCCeEEEEEEEeEECCCC--cEeEEEEEEECCeeeEEEec
Confidence 34567888999977678877774222111 13567888898888888764
No 5
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=26.38 E-value=85 Score=20.21 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHhcccC
Q psy13740 55 KMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRF 89 (185)
Q Consensus 55 eMq~~aie~a~eAl~ky~~ekdIA~~IK~~LDkkY 89 (185)
.++++|++..+.-+++.+ .+|-..|+++|.++.
T Consensus 11 ~~KqEIL~E~RkElqK~K--~EIIeAi~~El~~~~ 43 (45)
T 1use_A 11 RVKQELLEEVKKELQKVK--EEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhcC
Confidence 478888888888888766 689999999988763
No 6
>1u9d_A Hypothetical protein VC0714; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics; 1.70A {Vibrio cholerae o1 biovar eltor str} SCOP: d.80.1.5
Probab=19.41 E-value=2.9e+02 Score=20.69 Aligned_cols=47 Identities=9% Similarity=0.135 Sum_probs=37.1
Q ss_pred eeEEEEeecCCCCCCCCCCCCCcEEEeCCCCHHHHHHHHHHHHHHHHhc
Q psy13740 23 SFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKC 71 (185)
Q Consensus 23 ~~~~~~~~~k~~~a~~~Ms~~ki~I~~sDM~~eMq~~aie~a~eAl~ky 71 (185)
+|+.+|..+...-.+..|. -|.|....=+++.+..+++.+.+++.+.
T Consensus 50 ~fTle~i~s~~i~~G~~MP--~VeV~~fgRt~EqK~~la~~IT~av~~~ 96 (122)
T 1u9d_A 50 AFTFELINTQYFAEGGVYP--MVEVLWFGREQQTQDQIAQVITDQIRQL 96 (122)
T ss_dssp GCEEEECCCCCCCTTCCCC--EEEEEESCCCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEeeeEEEecCCCCC--EEEEEEcCCCHHHHHHHHHHHHHHHHHh
Confidence 5688888888888884454 6788777889999999988888887754
No 7
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=19.33 E-value=2.1e+02 Score=25.60 Aligned_cols=45 Identities=16% Similarity=0.381 Sum_probs=32.9
Q ss_pred HHHHHHhcccCCCceEEEEeC-CceeeEEEccCcEEEEEeCCEEEEEEecC
Q psy13740 79 AYLKNRFNRRFEPMWTCIVGT-NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128 (185)
Q Consensus 79 ~~IK~~LDkkYG~~WHCIVGk-sFGS~VTHe~~~fI~F~ig~~a~LLwKT~ 128 (185)
+....++++-|+..|++|.-. ... +++.++-+.+++..|+|||..
T Consensus 44 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~~~~vvv~R~~ 89 (457)
T 3gzx_A 44 DLYQLELERVFGRSWLMLGHETHIP-----KIGDYLTTYMGEDPVIMVRQK 89 (457)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCEEEeEHHHcC-----CCCCeEEEEECCEEEEEEECC
Confidence 445578888899999998754 331 234566778899999999963
No 8
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=18.51 E-value=2.2e+02 Score=24.82 Aligned_cols=43 Identities=12% Similarity=0.298 Sum_probs=31.2
Q ss_pred HHHHhcccCCCceEEEEeC-CceeeEEEccCcEEEEEeCCEEEEEEecC
Q psy13740 81 LKNRFNRRFEPMWTCIVGT-NFGAYVSYESRRFIYFYLGQTGVLLFRNG 128 (185)
Q Consensus 81 IK~~LDkkYG~~WHCIVGk-sFGS~VTHe~~~fI~F~ig~~a~LLwKT~ 128 (185)
...+++.-|...|++|.-. ... +++.++-+.+++..++|||..
T Consensus 25 ~~~E~~~if~~~W~~v~~~~el~-----~~g~~~~~~~~~~~vvv~R~~ 68 (447)
T 2bmo_A 25 FQHELKTIFARNWLFLTHDSLIP-----SPGDYVKAKMGVDEVIVSRQN 68 (447)
T ss_dssp HHHHHHHTTTTSCEEEEEGGGSC-----STTEEEEEEETTEEEEEEECT
T ss_pred HHHHHHHhhccCCeEEeEHHHCC-----CCCCeEEEEECCeeEEEEECC
Confidence 3566777889999998543 221 245677788999999999963
No 9
>3e9v_A Protein BTG2; B-cell translocation gene 2, structural genomics, PSI- 2, protein structure initiative; 1.70A {Homo sapiens} SCOP: d.370.1.1 PDB: 3dju_B 3djn_B
Probab=17.10 E-value=1e+02 Score=23.27 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHHHHhcC--Ch---HHHHHHHHHHhcccCCCceE
Q psy13740 51 DMTKKMQTYVIRAAKVAFEKCT--SQ---EEIAAYLKNRFNRRFEPMWT 94 (185)
Q Consensus 51 DM~~eMq~~aie~a~eAl~ky~--~e---kdIA~~IK~~LDkkYG~~WH 94 (185)
||-.|.+..+ ......|.... +. ...|+.|...|-++|-+.|+
T Consensus 1 ~M~~EI~~av-~Fl~~~l~~~~~l~~~~v~~F~~~L~~~L~~~y~~HW~ 48 (120)
T 3e9v_A 1 DMLPEIAAAV-GFLSSLLRTRGCVSEQRLKVFSGALQEALTEHYKHHWF 48 (120)
T ss_dssp CCHHHHHHHH-HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ChHHHHHHHH-HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4555544444 33334443331 22 24688899999999999998
No 10
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=16.09 E-value=2.7e+02 Score=24.49 Aligned_cols=46 Identities=13% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHhcccCCCceEEEEeC-CceeeEEEccCcEEEEEeCCEEEEEEecCC
Q psy13740 79 AYLKNRFNRRFEPMWTCIVGT-NFGAYVSYESRRFIYFYLGQTGVLLFRNGS 129 (185)
Q Consensus 79 ~~IK~~LDkkYG~~WHCIVGk-sFGS~VTHe~~~fI~F~ig~~a~LLwKT~~ 129 (185)
+....+++.-|...|++|.-. ... +++.++-+.+++..++|||...
T Consensus 30 ~~~~~E~~~if~~~W~~v~~~~elp-----~~G~~~~~~i~g~~vvv~R~~d 76 (412)
T 3vca_A 30 EVYALDLQHIFYKQWLYAVPVCQLA-----KAGSYTTLRVGAYEVVIVRSRD 76 (412)
T ss_dssp HHHHHHHHHTTTTSCEEEEEGGGGC-----STTEEEEEEETTEEEEEEECTT
T ss_pred HHHHHHHHHHHhccCEEEEEHHHCC-----CCCCeEEEEECCEEEEEEEcCC
Done!