RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13740
(185 letters)
>gnl|CDD|189895 pfam01221, Dynein_light, Dynein light chain type 1.
Length = 86
Score = 112 bits (282), Expect = 9e-33
Identities = 38/82 (46%), Positives = 57/82 (69%)
Query: 47 IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
+K DM ++MQ I A A EK +++IAA++K F++++ P W CIVG NFG+YV+
Sbjct: 5 VKNADMPEEMQEDAIECAAEALEKFNVEKDIAAHIKKEFDKKYGPTWHCIVGKNFGSYVT 64
Query: 107 YESRRFIYFYLGQTGVLLFRNG 128
+E++ FIYFY+GQ LLF+ G
Sbjct: 65 HETKHFIYFYIGQLAFLLFKTG 86
>gnl|CDD|185421 PTZ00059, PTZ00059, dynein light chain; Provisional.
Length = 90
Score = 102 bits (257), Expect = 4e-29
Identities = 42/90 (46%), Positives = 63/90 (70%)
Query: 39 LMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVG 98
+M+D +K DM++ MQ I A A EK +++IAAY+K F++++ P W CIVG
Sbjct: 1 MMSDRKAVVKNADMSEDMQQDAIDCANQALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVG 60
Query: 99 TNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
NFG+YV++E++ FIYFYLGQ +LLF++G
Sbjct: 61 RNFGSYVTHETKHFIYFYLGQVAILLFKSG 90
>gnl|CDD|166697 PLN03058, PLN03058, dynein light chain type 1 family protein;
Provisional.
Length = 128
Score = 55.4 bits (133), Expect = 2e-10
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 3/99 (3%)
Query: 31 QKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQ---EEIAAYLKNRFNR 87
+K Q +L V ++ DM +Q A+ + + + +A LK F+
Sbjct: 22 KKAKEQQDQKDELNVRVRASDMPLVLQNRAFSCARDILDAMPGKLDSKRLALALKKEFDS 81
Query: 88 RFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFR 126
+ P W CIVGT+FG+YV++ + F+YF + + +LLF+
Sbjct: 82 AYGPAWHCIVGTSFGSYVTHSTGGFLYFSIDKVYILLFK 120
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 33.0 bits (76), Expect = 0.017
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A A ++EKKE+EEEEEE+
Sbjct: 58 AAAAAAAAAEEEKKEEEEEEEED 80
Score = 31.4 bits (72), Expect = 0.060
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 163 AGGPKKEKDEKKEDEEEEEEE 183
A E+++K+E+EEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 31.1 bits (71), Expect = 0.082
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +E+K++EEEEEEE +
Sbjct: 57 AAAAAAAAAAEEEKKEEEEEEEEDD 81
Score = 30.3 bits (69), Expect = 0.18
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 163 AGGPKKEKDEKKEDEEEEEEEKE 185
A E+E++EEEE+E
Sbjct: 55 AAAAAAAAAAAAEEEKKEEEEEE 77
Score = 29.5 bits (67), Expect = 0.31
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +E+++EEEEE+E
Sbjct: 54 AAAAAAAAAAAAAEEEKKEEEEEEE 78
Score = 26.8 bits (60), Expect = 3.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A ++E +EEEEEE+E
Sbjct: 55 AAAAAAAAAAAAEEEKKEEEEEEEE 79
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 33.1 bits (76), Expect = 0.021
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A AG + ++ E+EE+EEE +E
Sbjct: 73 AAAGAEAAAEADEAEEEEKEEEAEE 97
Score = 31.6 bits (72), Expect = 0.076
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 163 AGGPKKEKDEKKEDEEEEEEEKE 185
E DE +E+E+EEE E+E
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEE 98
Score = 27.4 bits (61), Expect = 2.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A A + E++EK+E+ EEE ++
Sbjct: 79 AAAEADEAEEEEKEEEAEEESDD 101
Score = 27.0 bits (60), Expect = 3.0
Identities = 16/53 (30%), Positives = 25/53 (47%)
Query: 133 DIQMYLKSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
DI +K++AEA A A A E +E++++EE EEE +
Sbjct: 49 DIDEVIKNAAEAPAAAAAAGAAAAAAAGAEAAAEADEAEEEEKEEEAEEESDD 101
Score = 25.8 bits (57), Expect = 8.5
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A +E+++++E EEE +++
Sbjct: 80 AAEADEAEEEEKEEEAEEESDDD 102
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 34.0 bits (78), Expect = 0.027
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 133 DIQMYLKSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
DI++ + K ++ K K ++EKK + ++++ E+
Sbjct: 42 DIEIPSPKQPKKKRPTTPRKPATTK-KSKKKDKEKLTEEEKKPESDDDKTEEN 93
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 31.9 bits (73), Expect = 0.050
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A E++E++E+EEEEEEE+
Sbjct: 68 AAAAAAAAEEEEEEEEEEEEEEEES 92
Score = 31.6 bits (72), Expect = 0.067
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A ++E++E+EEEEEEE+E
Sbjct: 67 AAAAAAAAAEEEEEEEEEEEEEEEE 91
Score = 30.8 bits (70), Expect = 0.12
Identities = 12/25 (48%), Positives = 20/25 (80%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A ++E++E++E+EEEEEE +E
Sbjct: 70 AAAAAAEEEEEEEEEEEEEEEESEE 94
Score = 30.8 bits (70), Expect = 0.13
Identities = 10/19 (52%), Positives = 18/19 (94%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
++E++E++E+EEEEE E+E
Sbjct: 77 EEEEEEEEEEEEEEESEEE 95
Score = 30.4 bits (69), Expect = 0.20
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 11/53 (20%)
Query: 133 DIQMYLKSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
+I+ +K +A A A A +E++E+EEEEEEE+E
Sbjct: 49 NIEEAIKKAAAAPVAAA-----------AAAAAAAAAAEEEEEEEEEEEEEEE 90
Score = 30.0 bits (68), Expect = 0.22
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +E++E++E+EEEEEEE E
Sbjct: 69 AAAAAAAEEEEEEEEEEEEEEEESE 93
Score = 26.2 bits (58), Expect = 6.2
Identities = 8/17 (47%), Positives = 15/17 (88%)
Query: 166 PKKEKDEKKEDEEEEEE 182
++E++E++E+EE EEE
Sbjct: 79 EEEEEEEEEEEEESEEE 95
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 31.7 bits (72), Expect = 0.066
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +EK E+KE+E+++EEEKE
Sbjct: 68 AAAAAAAEEKAEEKEEEKKKEEEKE 92
Score = 30.2 bits (68), Expect = 0.22
Identities = 10/20 (50%), Positives = 19/20 (95%)
Query: 166 PKKEKDEKKEDEEEEEEEKE 185
+++++EKK++EE+EEEE+E
Sbjct: 78 AEEKEEEKKKEEEKEEEEEE 97
Score = 29.4 bits (66), Expect = 0.48
Identities = 9/25 (36%), Positives = 19/25 (76%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +K +++++E ++EEE+E+E
Sbjct: 70 AAAAAEEKAEEKEEEKKKEEEKEEE 94
Score = 27.5 bits (61), Expect = 1.9
Identities = 7/25 (28%), Positives = 17/25 (68%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A E+ ++++EE+++EE++
Sbjct: 67 AAAAAAAAEEKAEEKEEEKKKEEEK 91
Score = 27.1 bits (60), Expect = 2.4
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +EK+E+K+ EEE+EEE+E
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEE 96
Score = 27.1 bits (60), Expect = 3.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A K E+ E+++ +EEE+EE+E
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEE 95
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 31.5 bits (72), Expect = 0.073
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 163 AGGPKKEKDEKKEDEEEEEEE 183
A + +K+EKKE+EEEE ++
Sbjct: 76 AAAAEAKKEEKKEEEEEESDD 96
Score = 30.0 bits (68), Expect = 0.29
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A A + K E+K++EEEEE +
Sbjct: 73 AAAAAAAEAKKEEKKEEEEEESD 95
Score = 27.7 bits (62), Expect = 1.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A + KKE+++EEEEE+
Sbjct: 70 AAAAAAAAAAEAKKEEKKEEEEEES 94
Score = 26.5 bits (59), Expect = 4.2
Identities = 8/23 (34%), Positives = 17/23 (73%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A A K++++K+E+EEE +++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
Score = 26.1 bits (58), Expect = 6.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A E K++E++EEEE+E
Sbjct: 69 AAAAAAAAAAAEAKKEEKKEEEEEE 93
Score = 26.1 bits (58), Expect = 6.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A + + EE++EEE+E
Sbjct: 68 AAAAAAAAAAAAEAKKEEKKEEEEE 92
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 31.5 bits (72), Expect = 0.081
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +EKKE+EEEEEE++E
Sbjct: 68 AAAAAAAAAAEEKKEEEEEEEEKEE 92
Score = 31.1 bits (71), Expect = 0.097
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A A +K+++E++E+E+EE EE
Sbjct: 73 AAAAAEEKKEEEEEEEEKEESEE 95
Score = 31.1 bits (71), Expect = 0.099
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A E+ +++E+EEEE+EE E
Sbjct: 70 AAAAAAAAEEKKEEEEEEEEKEESE 94
Score = 31.1 bits (71), Expect = 0.11
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 163 AGGPKKEKDEKKEDEEEEEEE 183
A KKE++E++E++EE EEE
Sbjct: 76 AAEEKKEEEEEEEEKEESEEE 96
Score = 31.1 bits (71), Expect = 0.12
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +++K+E+EEEEE+E+
Sbjct: 69 AAAAAAAAAEEKKEEEEEEEEKEES 93
Score = 30.7 bits (70), Expect = 0.13
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A E+K++EEEEEEEKE
Sbjct: 67 AAAAAAAAAAAEEKKEEEEEEEEKE 91
Score = 30.7 bits (70), Expect = 0.14
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +++K+E++E+EE+EE E+E
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEE 96
Score = 29.9 bits (68), Expect = 0.31
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +EK E++E+EEE+EE +E
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEE 95
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 31.7 bits (72), Expect = 0.083
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 102 GAYVSYESRRFIYFYLGQTGVLLFRN--GSILHDIQM--YLKSSAEAKAKGPRKRKLRPD 157
G++ ++ +I + G LL R + Q + K AE + +K K+ P+
Sbjct: 7 GSFAQMSAKDWIRIIVIVGGYLLIRPYFIKLGAKAQEKEHEKERAEREEAREKKAKISPN 66
Query: 158 CKFALAGGPKKEKDEKKEDEEEEEEEKE 185
AL GG E+ D+EE+EE+
Sbjct: 67 ---ALRGGATAGHGEEDTDDEEDEEDFA 91
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 32.7 bits (74), Expect = 0.11
Identities = 13/22 (59%), Positives = 20/22 (90%)
Query: 164 GGPKKEKDEKKEDEEEEEEEKE 185
GG +E++E++E+EEEEEEE+E
Sbjct: 860 GGDSEEEEEEEEEEEEEEEEEE 881
Score = 32.3 bits (73), Expect = 0.14
Identities = 12/22 (54%), Positives = 20/22 (90%)
Query: 164 GGPKKEKDEKKEDEEEEEEEKE 185
G ++E++E++E+EEEEEEE+E
Sbjct: 861 GDSEEEEEEEEEEEEEEEEEEE 882
Score = 31.9 bits (72), Expect = 0.18
Identities = 11/19 (57%), Positives = 19/19 (100%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
++E++E++E+EEEEEEE+E
Sbjct: 866 EEEEEEEEEEEEEEEEEEE 884
Score = 31.1 bits (70), Expect = 0.34
Identities = 11/19 (57%), Positives = 19/19 (100%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
++E++E++E+EEEEEEE+E
Sbjct: 871 EEEEEEEEEEEEEEEEEEE 889
Score = 31.1 bits (70), Expect = 0.39
Identities = 11/19 (57%), Positives = 19/19 (100%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
++E++E++E+EEEEEEE+E
Sbjct: 867 EEEEEEEEEEEEEEEEEEE 885
Score = 30.0 bits (67), Expect = 0.84
Identities = 11/19 (57%), Positives = 19/19 (100%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
++E++E++E+EEEEEEE+E
Sbjct: 869 EEEEEEEEEEEEEEEEEEE 887
Score = 30.0 bits (67), Expect = 0.93
Identities = 11/19 (57%), Positives = 19/19 (100%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
++E++E++E+EEEEEEE+E
Sbjct: 868 EEEEEEEEEEEEEEEEEEE 886
Score = 29.6 bits (66), Expect = 1.1
Identities = 11/19 (57%), Positives = 19/19 (100%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
++E++E++E+EEEEEEE+E
Sbjct: 870 EEEEEEEEEEEEEEEEEEE 888
Score = 29.2 bits (65), Expect = 1.3
Identities = 11/19 (57%), Positives = 18/19 (94%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
++E++E++E+EEEEEEE E
Sbjct: 873 EEEEEEEEEEEEEEEEENE 891
Score = 29.2 bits (65), Expect = 1.6
Identities = 10/19 (52%), Positives = 18/19 (94%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
++E++E++E+EEEEEEE+
Sbjct: 872 EEEEEEEEEEEEEEEEEEN 890
Score = 28.8 bits (64), Expect = 1.9
Identities = 10/19 (52%), Positives = 18/19 (94%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
++E++E++E+EEEEEE +E
Sbjct: 874 EEEEEEEEEEEEEEEENEE 892
Score = 28.8 bits (64), Expect = 2.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 164 GGPKKEKDEKKEDEEEEEEEKE 185
G + +E++E+EEEEEEE+E
Sbjct: 857 GSDGGDSEEEEEEEEEEEEEEE 878
Score = 28.4 bits (63), Expect = 2.8
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 164 GGPKKEKDEKKEDEEEEEEEKE 185
GG E++E+EEEEEEE+E
Sbjct: 856 GGSDGGDSEEEEEEEEEEEEEE 877
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 31.1 bits (70), Expect = 0.28
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 139 KSSAEAKAKGPRKR-KLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
+ S +K P R LR + + G E +E +E+EEEEEEE+E
Sbjct: 196 ERSKSSKVASPTPRLGLRTPPNSSSSSGSDSESEEDEEEEEEEEEEEE 243
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 30.8 bits (69), Expect = 0.34
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 157 DCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
K AG ++DE EDEEEEEEE+E
Sbjct: 119 PKKAGNAGKKATKEDESDEDEEEEEEEEE 147
Score = 28.1 bits (62), Expect = 2.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 164 GGPKKEKDEKKEDEEEEEEEKE 185
+ E DE +E+EEEEEEE+
Sbjct: 129 ATKEDESDEDEEEEEEEEEEEA 150
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 29.8 bits (68), Expect = 0.66
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 140 SSAEAKAKG-----PRKRKLRPDCKFALAGGP--KKEKDEKKEDEEEEEEEKE 185
S A A+A K L + K L+ ++E++E+EEEEEEE
Sbjct: 265 SKAVAQALALAAALADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Score = 29.4 bits (67), Expect = 1.1
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 166 PKKEKDEKKEDEEEEEEEKE 185
+E++E++E+EEEEE +E
Sbjct: 300 AAEEEEEEEEEEEEEEPSEE 319
Score = 28.7 bits (65), Expect = 1.5
Identities = 11/25 (44%), Positives = 19/25 (76%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A ++E++E++E+EEEE E+E
Sbjct: 296 AQAAAAEEEEEEEEEEEEEEPSEEE 320
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 29.9 bits (68), Expect = 0.78
Identities = 15/48 (31%), Positives = 30/48 (62%)
Query: 138 LKSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
KA+ R+ + + K A AG K+E++E++++++EEE+E+E
Sbjct: 411 KIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEE 458
Score = 28.3 bits (64), Expect = 2.4
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 139 KSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
K++ + K + K R + K K +++E+EEE+E+++E
Sbjct: 407 KATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
Score = 27.2 bits (61), Expect = 5.3
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 129 SILHDIQMYLKSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
I+ + + + K K K + + + +KEK E++++EEEEE E+E
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEE-----EEEKEKKEEEKEEEEEEAEEE 465
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 28.4 bits (63), Expect = 1.1
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A P ++ +E KE+EEEEE+E
Sbjct: 76 AATAEPAEKAEEAKEEEEEEEDE 98
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 28.9 bits (65), Expect = 1.1
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 139 KSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
K E + K K K + K K +KD+KK+D+ E+++EKE
Sbjct: 73 KVKKEYEEKQKWKWKKKKSKK--KKDKDKDKKDDKKDDKSEKKDEKE 117
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 28.0 bits (62), Expect = 1.4
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A AG + K E+K++EEEEEE+
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEED 104
Score = 27.6 bits (61), Expect = 1.9
Identities = 9/16 (56%), Positives = 14/16 (87%)
Query: 170 KDEKKEDEEEEEEEKE 185
+ KKE+++EEEEE+E
Sbjct: 88 AEAKKEEKKEEEEEEE 103
Score = 27.6 bits (61), Expect = 2.3
Identities = 10/19 (52%), Positives = 16/19 (84%)
Query: 165 GPKKEKDEKKEDEEEEEEE 183
+ +K+EKKE+EEEEE++
Sbjct: 87 KAEAKKEEKKEEEEEEEDD 105
Score = 26.0 bits (57), Expect = 6.7
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEE 182
A A K++++K+E+EEEE++
Sbjct: 84 AGAKAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|200539 cd11278, Sema_MET, The Sema domain, a protein interacting module,
of MET (also called hepatocyte growth factor receptor,
HGFR). MET is encoded by the c-met protooncogene. MET
is a receptor tyrosine kinase that binds its ligand,
hepatocyte growth factor/scatter factor (HGF/SF). HGF/SF
and MET are essential for the development of several
tissues and organs, including the placenta, liver, and
several groups of skeletal muscles. It also plays a
major role in the abnormal migration of cancer cells as
a result of overexpression or MET mutations. MET is
composed of an alpha-beta heterodimer. The extracellular
alpha chain is disulfide linked to the beta chain, which
contains an extracellular ligand-binding region with a
Sema domain, a PSI domain and four IPT repeats, a
transmembrane segment, and an intracellular catalytic
tyrosine kinase domain. The cytoplasmic C-terminal
region acts as a docking site for multiple protein
substrates, including Grb2, Gab1, STAT3, Shc, SHIP-1 and
Src. The Sema domain is located at the N-terminus and
contains four disulfide bonds formed by eight conserved
cysteine residues. The Sema domain of Met is necessary
for receptor dimerization and activation.
Length = 492
Score = 29.1 bits (65), Expect = 1.6
Identities = 11/40 (27%), Positives = 17/40 (42%)
Query: 95 CIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNGSILHDI 134
C+V T + RF+ F++G T + LH I
Sbjct: 151 CVVSTLGSKVLVTVKDRFVNFFVGNTINSSYFPDHPLHSI 190
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 27.6 bits (62), Expect = 1.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A A +K+EKKE+ EEE ++
Sbjct: 79 AAAAAAAAKKEEKKEESEEESDD 101
Score = 26.8 bits (60), Expect = 3.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A A K E+K++E EEE +
Sbjct: 78 AAAAAAAAAKKEEKKEESEEESD 100
Score = 26.5 bits (59), Expect = 5.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A A +K+E +EE EEE +
Sbjct: 76 AAAAAAAAAAAKKEEKKEESEEESD 100
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 28.5 bits (63), Expect = 2.1
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 138 LKSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEE 183
L S + KA P++ +L + L +EK ++E EEEE EE
Sbjct: 186 LGGSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEE 231
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 28.1 bits (63), Expect = 3.0
Identities = 9/20 (45%), Positives = 19/20 (95%)
Query: 166 PKKEKDEKKEDEEEEEEEKE 185
P+++ +E+++++EEEEEE+E
Sbjct: 344 PEQKDEEEEQEDEEEEEEEE 363
Score = 27.7 bits (62), Expect = 4.0
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 166 PKKEKDEKKEDEEEEEEEKE 185
++KDE++E E+EEEEE+E
Sbjct: 343 NPEQKDEEEEQEDEEEEEEE 362
Score = 27.7 bits (62), Expect = 4.0
Identities = 12/21 (57%), Positives = 19/21 (90%)
Query: 165 GPKKEKDEKKEDEEEEEEEKE 185
+K+++E++EDEEEEEEE+E
Sbjct: 344 PEQKDEEEEQEDEEEEEEEEE 364
Score = 26.6 bits (59), Expect = 8.7
Identities = 10/20 (50%), Positives = 16/20 (80%)
Query: 166 PKKEKDEKKEDEEEEEEEKE 185
++E+ E +E+EEEEEE +E
Sbjct: 348 DEEEEQEDEEEEEEEEEPEE 367
>gnl|CDD|165653 PLN00078, PLN00078, photosystem I reaction center subunit N (PsaN);
Provisional.
Length = 122
Score = 27.4 bits (60), Expect = 3.1
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 134 IQMYLKSSAEAKAKGPRKR-----KLRPDCKFALAGGPKKEKDEKKEDEEEE 180
+Q YLK S E K K ++R K F L GP +EK E + E E+
Sbjct: 61 LQEYLKKSEENKEKNDKERLDDYYKRNYKDYFGLIEGPAREKKEDELTESEK 112
>gnl|CDD|225894 COG3358, COG3358, Uncharacterized conserved protein [Function
unknown].
Length = 262
Score = 27.6 bits (61), Expect = 3.3
Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 24/81 (29%)
Query: 3 HFLISFSYQ--DVRAPNRSHFHSFVYF-----------YFSQKDTPQGTLMTDLPVAIKK 49
L F+ Q +R P R FH YF YF + D A +
Sbjct: 101 GRLGQFALQVFPIRNPKRFEFHGLAYFPPDPEWRIEARYFPEPDA-----------ATVE 149
Query: 50 VDMTKKMQTYVIRAAKVAFEK 70
+ + RA VAF
Sbjct: 150 LATADGVPAATPRAGVVAFLL 170
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 27.5 bits (61), Expect = 3.7
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 166 PKKEKDEKKEDEEEEEEEKE 185
K+ K++++E+E EEEEE+E
Sbjct: 262 EKELKEDEEEEETEEEEEEE 281
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 27.4 bits (61), Expect = 4.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
+E ++ +E+EEEEEEE E
Sbjct: 169 DEEDEKDEEEEEEEEEEDE 187
Score = 27.4 bits (61), Expect = 4.2
Identities = 12/19 (63%), Positives = 16/19 (84%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
E+DEK E+EEEEEEE++
Sbjct: 168 VDEEDEKDEEEEEEEEEED 186
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 27.7 bits (62), Expect = 4.1
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEE 183
A A +EEEEEE+
Sbjct: 280 AAAAAAAAAAAAAPAEEEEEEED 302
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 27.0 bits (60), Expect = 5.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 166 PKKEKDEKKEDEEEEEEEKE 185
K + E E EE +EEEKE
Sbjct: 52 KKSDDQETAEIEEVKEEEKE 71
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 25.0 bits (55), Expect = 5.2
Identities = 10/16 (62%), Positives = 15/16 (93%)
Query: 170 KDEKKEDEEEEEEEKE 185
++EK+EDEEE E+E+E
Sbjct: 22 EEEKREDEEENEDEEE 37
>gnl|CDD|226956 COG4590, COG4590, ABC-type uncharacterized transport system,
permease component [General function prediction only].
Length = 733
Score = 27.2 bits (60), Expect = 5.5
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 112 FIYFYLGQTGVLLFRNGSILHDIQMYLKSSAEAKAKGPR 150
I+ YL V LF + SI D Q+ S+ + G
Sbjct: 39 LIFIYLAMAVVPLFGDASIRGDNQVKTVSTTDPLLMGMG 77
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 26.9 bits (60), Expect = 6.1
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEK 184
A A ++E DE E++++EE K
Sbjct: 300 AAASAEEEEDDEDDEEDDDEETLK 323
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 27.0 bits (60), Expect = 6.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 63 AAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYV 105
A + T+ E+I+A ++ + PM TC +G++ A V
Sbjct: 447 AELAPGPRVTTDEDISAAIRFLARTAYHPMGTCRMGSDPAAVV 489
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 26.9 bits (60), Expect = 6.8
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 22/106 (20%)
Query: 83 NRFNRRFEPMWTCIVGTNFGAYVSYESRR----FIYFYLGQTGVLLFRNGSILHDIQMYL 138
N F+RR + E + +++ YLG +G L +
Sbjct: 89 NWFDRREI---------TLTITIPKEVQNNGSLYLHVYLGLSGYSLDPTDKGYDSGKAVH 139
Query: 139 KSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEK 184
+K K K L GG EK+E EEE+
Sbjct: 140 FVFPLTTYLPKKKVK-----KKNLLGGKS----EKEEPEEEKTPAP 176
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 26.7 bits (59), Expect = 8.2
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 166 PKKEKDEKKEDEEEEEEEKE 185
++EK KE+E +EEEEKE
Sbjct: 49 EEEEKTTDKEEEVDEEEEKE 68
Score = 26.7 bits (59), Expect = 8.7
Identities = 11/19 (57%), Positives = 16/19 (84%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
KKE++EK D+EEE +E+E
Sbjct: 47 KKEEEEKTTDKEEEVDEEE 65
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 26.7 bits (59), Expect = 8.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 167 KKEKDEKKEDEEEEEEEKE 185
K+EKDE+K +E + EE E
Sbjct: 283 KEEKDEEKSEEVKTEEVDE 301
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 26.6 bits (59), Expect = 8.3
Identities = 12/17 (70%), Positives = 14/17 (82%)
Query: 169 EKDEKKEDEEEEEEEKE 185
DE++EDEEEEEEE E
Sbjct: 388 RDDEEEEDEEEEEEEDE 404
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 26.4 bits (58), Expect = 8.7
Identities = 13/16 (81%), Positives = 15/16 (93%)
Query: 170 KDEKKEDEEEEEEEKE 185
KDEK+ED+EEEEEE E
Sbjct: 44 KDEKQEDDEEEEEEDE 59
>gnl|CDD|180695 PRK06792, flgD, flagellar basal body rod modification protein;
Validated.
Length = 190
Score = 26.1 bits (57), Expect = 9.0
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 165 GPKKEKDEKKEDEEEEEEEK 184
+DEKK+D E+ EE K
Sbjct: 169 TETNPEDEKKDDIEKNEEVK 188
>gnl|CDD|131231 TIGR02176, pyruv_ox_red, pyruvate:ferredoxin (flavodoxin)
oxidoreductase, homodimeric. This model represents a
single chain form of pyruvate:ferredoxin (or flavodoxin)
oxidoreductase. This enzyme may transfer electrons to
nitrogenase in nitrogen-fixing species. Portions of this
protein are homologous to gamma subunit of the four
subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Length = 1165
Score = 26.7 bits (59), Expect = 9.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 43 LPVAIKKVDMTKKMQTYVIRAAKVAFE 69
LP +K+ K+++ Y I A K+A E
Sbjct: 521 LPNGVKRYIADKEIKFYTIDAVKIAQE 547
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 26.6 bits (58), Expect = 9.6
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 134 IQMYLKSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
++ K AE K K +K + K A KK +++KK+ EE ++ E++
Sbjct: 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEED 1686
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0696 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,526,312
Number of extensions: 874102
Number of successful extensions: 2753
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2522
Number of HSP's successfully gapped: 163
Length of query: 185
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 94
Effective length of database: 6,901,388
Effective search space: 648730472
Effective search space used: 648730472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)