RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13740
(185 letters)
>1yo3_A Dynein light chain 1; structural genomics consortium, microtub
malaria, SGC, transport protein; 1.65A {Plasmodium
falciparum} PDB: 1f3c_A 1f95_A 1f96_A 1rhw_A 2p1k_A
2p2t_A 3bri_A 3e2b_A 3fm7_E 3glw_A 3dvt_A 2pg1_A 3p8m_A
1pwj_A 2xqq_A 3brl_A 1re6_A 1cmi_A 3dvh_A 3dvp_A ...
Length = 102
Score = 111 bits (279), Expect = 1e-32
Identities = 40/99 (40%), Positives = 65/99 (65%)
Query: 30 SQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRF 89
S + + +K VDMT++MQ I A A +K +++IAA++K F+R++
Sbjct: 4 SHHHHHHSSGLVPRGSVVKNVDMTEEMQIDAIDCANQALQKYNVEKDIAAHIKKEFDRKY 63
Query: 90 EPMWTCIVGTNFGAYVSYESRRFIYFYLGQTGVLLFRNG 128
+P W C+VG NFG+YV++E++ FIYFY+GQ +LLF++G
Sbjct: 64 DPTWHCVVGRNFGSYVTHETKNFIYFYIGQVAILLFKSG 102
>4ds1_A Dynein light chain 1, cytoplasmic; dynein light chain fold, peptide
binding, nucle structural protein-transport protein
complex; 1.85A {Saccharomyces cerevisiae}
Length = 97
Score = 107 bits (270), Expect = 4e-31
Identities = 27/82 (32%), Positives = 49/82 (59%)
Query: 47 IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
+K D+T K++ ++ +K A +K + +IA +K + + ++ W IVG NFG+YV+
Sbjct: 16 VKASDITDKLKEDILTISKDALDKYQLERDIAGTVKKQLDVKYGNTWHVIVGKNFGSYVT 75
Query: 107 YESRRFIYFYLGQTGVLLFRNG 128
+E F+YFY+G L+F+
Sbjct: 76 HEKGHFVYFYIGPLAFLVFKTA 97
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.014
Identities = 28/185 (15%), Positives = 48/185 (25%), Gaps = 60/185 (32%)
Query: 5 LISFSYQDVRAPN--RSHFHSFVYFYFSQKDT--PQGTLM---TDLPVAIKKVDMTK--- 54
+I S +V P R F F P L D+ + V + K
Sbjct: 358 IIESSL-NVLEPAEYRKMFDRLSVF---PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK 413
Query: 55 --------KMQTYVIRAAKVAFEKCTSQEE--------IAAYLKNRFNRRFEPMWTCIVG 98
K T I + + E E + Y + F+ I
Sbjct: 414 YSLVEKQPKESTISIPS--IYLELKVKLENEYALHRSIVDHY---NIPKTFDS-DDLIPP 467
Query: 99 TNFG---AYVSY-----------ESRRFIYF---YLGQ----TGVLLFRNGSI---LHDI 134
+++ + R ++ +L Q +GSI L +
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 135 QMYLK 139
+ Y
Sbjct: 528 KFYKP 532
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.030
Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 6 ISFSYQDVRA----PNRSHFHSFV---YFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQT 58
++ S+ + P S F + F + +G D P ++ K
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTT--PAELVGKFLG 66
Query: 59 YVIRAAKVAFEKCTSQEEIAAYLKNRFNRRF 89
YV ++ V K +++ F +
Sbjct: 67 YV--SSLVEPSKVGQFDQVLNLCLTEFENCY 95
Score = 27.3 bits (60), Expect = 4.2
Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 45/150 (30%)
Query: 25 VYFYF---SQKDTPQGTLMTDLPVAIKK--VDMTKKMQTY--VIRAAKVAFEKCTSQEEI 77
V F+ + P T LP +I + ++ + + + I +QE++
Sbjct: 302 VLFFIGVRCYEAYPN----TSLPPSILEDSLENNEGVPSPMLSISNL--------TQEQV 349
Query: 78 AAYLKNRFNRRFEPMWTCIVGTNFGAYVS-YESRR-FIYFYLGQTGVLLFRNGSILHDIQ 135
Y+ + N +S + + +G L+ +
Sbjct: 350 QDYVN-KTNSHLPA--------GKQVEISLVNGAKNLVV-----SG-----PPQSLYGLN 390
Query: 136 MYL-KSSAEAK---AKGP-RKRKLRPDCKF 160
+ L K+ A + ++ P +RKL+ +F
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRF 420
>2uzx_B Hepatocyte growth factor receptor; signaling protein/receptor,
leucine rich repeat, receptor ectodomain, signaling
protein, ATP-binding; 2.8A {Homo sapiens} PDB: 2uzy_B
1shy_B 1ssl_A
Length = 727
Score = 30.4 bits (67), Expect = 0.39
Identities = 11/100 (11%), Positives = 25/100 (25%), Gaps = 34/100 (34%)
Query: 2 NHFLISFSYQDVRAPNRSHFHSFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVI 61
++ +F + F+YF Q++T QT+
Sbjct: 226 IKYVHAFESNN-----------FIYFLTVQRETLDA-------------------QTFHT 255
Query: 62 RAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNF 101
R + C+ + +Y++
Sbjct: 256 RIIRF----CSINSGLHSYMEMPLECILTEKRKKRSTKKE 291
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.0 bits (64), Expect = 0.65
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Query: 140 SSAEAKAKGPRK-RKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
+ A+ + P RK R + + L + E E E+ +K+
Sbjct: 75 AQADRLTQEPESIRKWREEQRKRLQ--ELDAASKVMEQEWREKAKKD 119
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 26.4 bits (57), Expect = 4.0
Identities = 9/47 (19%), Positives = 22/47 (46%)
Query: 139 KSSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
E + + + + + +++D+ +D+E+EEEE+E
Sbjct: 26 DDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEEEEEE 72
Score = 26.4 bits (57), Expect = 4.9
Identities = 7/46 (15%), Positives = 26/46 (56%)
Query: 140 SSAEAKAKGPRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEEKE 185
++ + + ++ + K G +++DE ++D+++++E++E
Sbjct: 23 AAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDEE 68
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Length = 106
Score = 25.7 bits (56), Expect = 5.1
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 161 ALAGGPKKEKDEKKEDEEEEEEEKE 185
A E++++EE EE +
Sbjct: 74 GAAAASGDAAAEEEKEEEAAEESDD 98
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur,
iron-sulfur cluster, pyruvate catabolism, TPP-dependent
enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP:
c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB:
1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A*
2pda_A* 2uza_A*
Length = 1231
Score = 26.7 bits (59), Expect = 5.1
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 34 TPQGTLMTDLPVAIKKVDMTKKMQTYVIRAAKVAFE 69
+ + LP IK+ KK++ Y I A K+A +
Sbjct: 516 SSLEDMDKHLPSGIKRTIANKKLKFYNIDAVKIATD 551
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 26.2 bits (58), Expect = 7.2
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 149 PRKRKLRPDCKFALAGGPKKEKDEKKEDEEEEEEE 183
+ ++ P + L G + E E+ +
Sbjct: 254 RKVKEKIPGVQLLLVGVMAHDDPEGWIYFEKTLRK 288
>2goi_A Sperm lysozyme-like protein 1; mouse SLLP1, MSLLP1, sperm C-type
lysozyme-like protein 1, acrosomal sperm protein,
sperm-egg binding, fertilization; 2.30A {Mus musculus}
Length = 138
Score = 25.5 bits (55), Expect = 7.6
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 64 AKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIV 97
AKV F +C +E+ + + + W C+
Sbjct: 2 AKV-FSRCELAKEMHDFGLDGYRGYNLADWVCLA 34
>4fww_A Macrophage-stimulating protein receptor; beta-propeller,
cysteine-knot, receptor tyrosine kinase, MAC stimulating
protein, N-glycosylation; HET: NAG BMA; 1.85A {Homo
sapiens}
Length = 527
Score = 26.2 bits (56), Expect = 9.1
Identities = 16/103 (15%), Positives = 26/103 (25%), Gaps = 32/103 (31%)
Query: 2 NHFLISFSYQDVRAPNRSHFHSFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVI 61
++ SF FVYF Q + T
Sbjct: 206 IEYVHSFHTGA-----------FVYFLTVQPASV-----------------TDDPSALHT 237
Query: 62 RAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAY 104
R A++ ++ E+ Y + + RF P G
Sbjct: 238 RLARL----SATEPELGDYRELVLDCRFAPKLVPRGSPEGGQP 276
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.396
Gapped
Lambda K H
0.267 0.0413 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,817,438
Number of extensions: 158142
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 645
Number of HSP's successfully gapped: 40
Length of query: 185
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 97
Effective length of database: 4,244,745
Effective search space: 411740265
Effective search space used: 411740265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)