RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13740
         (185 letters)



>d3e2ba1 d.39.1.1 (A:3-89) Dynein light chain 1 (DLC1) {Fruit fly
           (Drosophila melanogaster) [TaxId: 7227]}
          Length = 87

 Score =  100 bits (250), Expect = 1e-28
 Identities = 41/82 (50%), Positives = 60/82 (73%)

Query: 47  IKKVDMTKKMQTYVIRAAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVS 106
           IK  DM+++MQ   +  A  A EK   +++IAAY+K  F++++ P W CIVG NFG+YV+
Sbjct: 6   IKNADMSEEMQQDAVDCATQALEKYNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 65

Query: 107 YESRRFIYFYLGQTGVLLFRNG 128
           +E+R FIYFYLGQ  +LLF++G
Sbjct: 66  HETRHFIYFYLGQVAILLFKSG 87


>d2nwdx1 d.2.1.2 (X:1-130) Lysozyme {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 130

 Score = 28.3 bits (63), Expect = 0.34
 Identities = 5/30 (16%), Positives = 10/30 (33%)

Query: 68 FEKCTSQEEIAAYLKNRFNRRFEPMWTCIV 97
          FE+C     +     + +       W C+ 
Sbjct: 3  FERCELARTLKRLGMDGYRGISLANWMCLA 32


>d1nx4a_ b.82.2.8 (A:) Carbapenem synthase, CarC {Erwinia carotovora
           [TaxId: 554]}
          Length = 271

 Score = 28.2 bits (62), Expect = 0.52
 Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 93  WTCIVGTNFGAYVSY-----ESRRFIYFYLGQTGVLLFRN 127
           +  ++ + FGAY+ +          I   L + G ++ +N
Sbjct: 6   FNPVMASGFGAYIDHRDFLEAKTETIKNLLMRQGFVVVKN 45


>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase
           At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId:
           3702]}
          Length = 184

 Score = 27.3 bits (59), Expect = 0.91
 Identities = 9/147 (6%), Positives = 30/147 (20%), Gaps = 9/147 (6%)

Query: 2   NHFLISFSYQDVRAPNRSHFHSFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVI 61
           +             P  +  H          +     +     + ++      +   +++
Sbjct: 35  SLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIKAAEKGKHIL 94

Query: 62  RAAKVAFEKCTSQEEIAAYLKNR------FNRRFEPMWTCI--VGTNFGAYVSYESRRFI 113
               VA       + + A   N                  +       G   +  ++   
Sbjct: 95  LEKPVAMNVTEFDKIVDACEANGVQIMDGTMWVHPQEACMVREFARLVGEIKNNGAKPDG 154

Query: 114 YFYLGQTGVLLFRNGSILHDIQMYLKS 140
           Y+        L  +      +    + 
Sbjct: 155 YWPSISRKTQLVVDAVK-ESVDKNYQQ 180


>d1qqya_ d.2.1.2 (A:) Lysozyme {Dog (Canis familiaris), milk
          [TaxId: 9615]}
          Length = 130

 Score = 25.6 bits (56), Expect = 2.8
 Identities = 6/30 (20%), Positives = 12/30 (40%)

Query: 68 FEKCTSQEEIAAYLKNRFNRRFEPMWTCIV 97
          F KC    ++ +   + F+      W C+ 
Sbjct: 4  FSKCELARKLKSMGMDGFHGYSLANWVCMA 33


>d1shyb1 b.69.12.1 (B:40-515) Hepatocyte growth factor receptor
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 476

 Score = 25.9 bits (56), Expect = 3.6
 Identities = 7/58 (12%), Positives = 20/58 (34%), Gaps = 13/58 (22%)

Query: 3   HFLISFSYQDVRAPNRSHFHSFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYV 60
            ++ +F   +           F+YF   Q++T          +    ++    + +Y+
Sbjct: 209 KYVHAFESNN-----------FIYFLTVQRETLDAQTFHTRIIRFCSIN--SGLHSYM 253


>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 495

 Score = 25.1 bits (54), Expect = 6.7
 Identities = 23/172 (13%), Positives = 48/172 (27%), Gaps = 32/172 (18%)

Query: 3   HFLISFSYQDVRAPNRSHFHSFVYFYFSQKDTPQGTLMTDLPVAIKKVDMTKKMQTYVIR 62
            F+ +    +   P        VYF+F +                  +D     +    R
Sbjct: 200 RFISAHLIPESDNPEDD----KVYFFFRENA----------------IDGEHSGKATHAR 239

Query: 63  AAKVAFEKCTSQEEIAAYLKNRFNRRFEPMWTCIVGTNFGAYVSYESRRFIYFYLGQTG- 121
             ++    C +       L N++    +    C V    G    ++  + ++    +   
Sbjct: 240 IGQI----CKNDFGGHRSLVNKWTTFLKARLICSVPGPNGIDTHFDELQDVFLMNSKDPK 295

Query: 122 ----VLLFR---NGSILHDIQMYLKSSAEAKAKGPRKRKLRPDCKFALAGGP 166
                 +F    N      + MY  S       GP   +  P+ ++    G 
Sbjct: 296 NPIVYGVFTTSSNIFKGSAVCMYSMSDVRRVFLGPYAHRDGPNYQWVPYQGR 347


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 694,447
Number of extensions: 31188
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 15
Length of query: 185
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,309,196
Effective search space: 137465580
Effective search space used: 137465580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)