BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13744
(296 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00267|SPT5H_HUMAN Transcription elongation factor SPT5 OS=Homo sapiens GN=SUPT5H PE=1
SV=1
Length = 1087
Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 154/432 (35%), Positives = 202/432 (46%), Gaps = 148/432 (34%)
Query: 2 TGGF--MSPRISSPMHPSGG-----RGGRGGGRGGHHGGNVRRDRELIGKTIKITGGPYK 54
GGF MSPRISSPMHPS G G GGG GG G RRD ELIG+T++I+ GPYK
Sbjct: 659 VGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYK 718
Query: 55 ----------------------------------VGSRTPGG-----GATP--------- 66
VGSR PGG G TP
Sbjct: 719 GYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMY 778
Query: 67 -----------------------------LHDGSRTP---GPWDPS--STPARSIHNDAY 92
LHDGSRTP G WDP+ +TP+R+ Y
Sbjct: 779 GSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEY 838
Query: 93 PMDD--------------------------SFNNSY-PHTPGT--MYGSS--------SE 115
DD N Y P TPGT MY + S
Sbjct: 839 AFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSP 898
Query: 116 HTSYSPL-------QASPSPSGYQ-SHSGVS---SGSSSYLGATPSPS----SEAAPYGT 160
SY P Q +PSP+GYQ +HS S + S A+PSPS S P G
Sbjct: 899 QGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTP-GA 957
Query: 161 PSPLSYSSRQASPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGV 220
PSP Y +P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+
Sbjct: 958 PSPGGY-----NPHTPGSGIEQN-SSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGM 1011
Query: 221 CSVYLAEEERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEED 280
CSVYL + E+ +SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G+V++ ++
Sbjct: 1012 CSVYLKDSEKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDE 1071
Query: 281 DVKMIDVKFLCK 292
+K+++++FL K
Sbjct: 1072 QLKILNLRFLGK 1083
>sp|O55201|SPT5H_MOUSE Transcription elongation factor SPT5 OS=Mus musculus GN=Supt5h PE=1
SV=1
Length = 1082
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 149/429 (34%), Positives = 198/429 (46%), Gaps = 145/429 (33%)
Query: 2 TGGF--MSPRISSPMHPSG-GRGGRGGGRGGHHGGNVRRDRELIGKTIKITGGPYK---- 54
GGF MSPRISSPMHPS G+ G G GG G RRD ELIG+T++I+ GPYK
Sbjct: 657 VGGFTPMSPRISSPMHPSAEGQHGGFGSPGGMSRGRGRRDNELIGQTVRISQGPYKGYIG 716
Query: 55 ------------------------------VGSRTPGG---------------------- 62
V S+ PGG
Sbjct: 717 VVKDATESTARVELHSTCQTISVDRQRLTTVDSQRPGGMTSTYGRTPMYGSQTPMYGSGS 776
Query: 63 ------GATPLHDGSRTP------------------GPWDPS--STPARSIHNDAYPMDD 96
TPL DGSRTP G WDP+ +TP+R+ Y DD
Sbjct: 777 RTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDD 836
Query: 97 --------------------------SFNNSY-PHTPGT--MYGSS--------SEHTSY 119
N Y P TPGT MY + S SY
Sbjct: 837 EPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSY 896
Query: 120 SPL-------QASPSPSGYQ-SHSGVS---SGSSSYLGATPSPS----SEAAPYGTPSPL 164
P Q +PSP+GYQ +HS S + S A+PSPS S P G PSP
Sbjct: 897 QPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTP-GAPSPG 955
Query: 165 SYSSRQASPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVY 224
Y +P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVY
Sbjct: 956 GY-----NPHTPGSGIEQN-SSDWVTTDIQVKVRDTYLDTQIVGQTGVIRSVTGGMCSVY 1009
Query: 225 LAEEERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEED-DVK 283
L + E+ +SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G++++ ED +K
Sbjct: 1010 LKDSEKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLEDQQIK 1069
Query: 284 MIDVKFLCK 292
+++++FL K
Sbjct: 1070 ILNLRFLGK 1078
>sp|Q5R405|SPT5H_PONAB Transcription elongation factor SPT5 OS=Pongo abelii GN=SUPT5H PE=2
SV=1
Length = 1083
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 154/432 (35%), Positives = 202/432 (46%), Gaps = 148/432 (34%)
Query: 2 TGGF--MSPRISSPMHPSGG-----RGGRGGGRGGHHGGNVRRDRELIGKTIKITGGPYK 54
GGF MSPRISSPMHPS G G GGG GG G RRD ELIG+T++I+ GPYK
Sbjct: 655 VGGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYK 714
Query: 55 ----------------------------------VGSRTPGG-----GATP--------- 66
VGSR PGG G TP
Sbjct: 715 GYIGVVKDATESTARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMY 774
Query: 67 -----------------------------LHDGSRTP---GPWDPS--STPARSIHNDAY 92
LHDGSRTP G WDP+ +TP+R+ Y
Sbjct: 775 GSGSRTPMYGSQTPLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEY 834
Query: 93 PMDD--------------------------SFNNSY-PHTPGT--MYGSS--------SE 115
DD N Y P TPGT MY + S
Sbjct: 835 AFDDEPTPSPQAYGGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSP 894
Query: 116 HTSYSPL-------QASPSPSGYQ-SHSGVS---SGSSSYLGATPSPS----SEAAPYGT 160
SY P Q +PSP+GYQ +HS S + S A+PSPS S P G
Sbjct: 895 QGSYQPSPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTP-GA 953
Query: 161 PSPLSYSSRQASPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGV 220
PSP Y +P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+
Sbjct: 954 PSPGGY-----NPHTPGSGIEQN-SSDWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGM 1007
Query: 221 CSVYLAEEERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEED 280
CSVYL + E+ +SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G+V++ ++
Sbjct: 1008 CSVYLKDSEKVVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDPDE 1067
Query: 281 DVKMIDVKFLCK 292
+K+++++FL K
Sbjct: 1068 QLKILNLRFLGK 1079
>sp|Q5ZI08|SPT5H_CHICK Transcription elongation factor SPT5 OS=Gallus gallus GN=SUPT5H PE=2
SV=1
Length = 1079
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 145/421 (34%), Positives = 195/421 (46%), Gaps = 141/421 (33%)
Query: 6 MSPRISSPMHPSGGRGGRGGGRGGHHGGNVRRDRELIGKTIKITGGPYK----------- 54
MSPRISSPMHPSG G G GG G RRD +LIG+T++I+ GPYK
Sbjct: 662 MSPRISSPMHPSGAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVVKDATE 721
Query: 55 -----------------------VGSRTPG----------------------------GG 63
VGSR PG G
Sbjct: 722 STARVELHSTCQTISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMYGSGSRTPMYGS 781
Query: 64 ATPLHDGSRTP------------------GPWDPS--STPARSIHNDAYPMDD------- 96
TPLHDGSRTP G WDP+ +TP+R+ + Y DD
Sbjct: 782 QTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRADEDFEYGFDDEPTPSPQ 841
Query: 97 -------------------SFNNSY-PHTPGT--MYGSS--------SEHTSYSPL---- 122
Y P TPGT MY + S SY P
Sbjct: 842 GYGGTPNPQTPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSPYAVPSPQGSYQPSPSPQ 901
Query: 123 ---QASPSPSGYQ-SHSGVS---SGSSSYLGATPSPS----SEAAPYGTPSPLSYSSRQA 171
Q +PSP GYQ +HS S + S A+PSPS S P G PSP Y
Sbjct: 902 SYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTP-GAPSPGGY----- 955
Query: 172 SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEERT 231
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL + E+
Sbjct: 956 NPHTPGSGIEQ-SSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVTGGMCSVYLKDSEKV 1014
Query: 232 LSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFLC 291
+SI + LEPV P ++KVKVI+GE +E TG+LLS+D +G+V++ ++ +K+++++FL
Sbjct: 1015 VSISSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLRFLG 1074
Query: 292 K 292
K
Sbjct: 1075 K 1075
>sp|Q9DDT5|SPT5H_DANRE Transcription elongation factor SPT5 OS=Danio rerio GN=supt5h PE=1
SV=1
Length = 1084
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 156/301 (51%), Gaps = 65/301 (21%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTPG---PWDPSS--TPARSIHNDAYPMDD--------- 96
P GSRTP G TPLHDGSRTPG WDP++ TP+R + DD
Sbjct: 790 PLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDDEYEFAYDDEPSPSPQGY 849
Query: 97 -----------------SFNNSY-PHTPGT--MYGSS--------SEHTSYSPL------ 122
N Y P TPGT MY + S SY P
Sbjct: 850 GGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQPSPSPQSY 909
Query: 123 -QASPSPSGYQ-SHSGVS---SGSSSYLGATPSPS----SEAAPYGTPSPLSYSSRQASP 173
Q +PSP GYQ +HS S + S A+PSPS S P G PSP Y+ P
Sbjct: 910 HQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTP-GAPSPGGYN-----P 963
Query: 174 FTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEERTLS 233
TPG+ +DQ + +W TTDI VR+ + D Q G+IR + G+CSV+L + E+ +S
Sbjct: 964 HTPGSNIDQ-ASNDWVTTDIMVRVKDTFLDGGVINQTGIIRSVTGGMCSVFLQDTEKVVS 1022
Query: 234 IEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFLCKY 293
I + LEPV P N+KVKVI+GE +E TGVLLS+D +G+V++ ++ +K+++++FL K
Sbjct: 1023 ISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLKILNLRFLGKL 1082
Query: 294 K 294
+
Sbjct: 1083 E 1083
>sp|Q9V460|SPT5H_DROME Transcription elongation factor SPT5 OS=Drosophila melanogaster
GN=Spt5 PE=1 SV=1
Length = 1078
Score = 126 bits (317), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 135/266 (50%), Gaps = 49/266 (18%)
Query: 53 YKVGSRTPGGGATPLHDGSRTP--GPWDPS--STPARSIHND-----------------A 91
+ +RTP G TP HDGS TP G WDP+ +TPAR+ D
Sbjct: 835 WDTDTRTPYGTMTPSHDGSMTPRHGAWDPTANTTPARNNDFDYSLEEPSPSPGYNPSTPG 894
Query: 92 YPMDDSFNNSYPHTPGTMYGSSSEHTSYSPLQASPSPS---GYQSHSGVSSGSSSYLGAT 148
Y M F P TPGT+YGS ++ ++P + GY + T
Sbjct: 895 YQMTSQFA---PQTPGTLYGSDRSYSPFNPSPSPAPSPYPVGYMN--------------T 937
Query: 149 PSPSSEAAPYGTPSPLSYSSRQASPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRG 208
PSPS+ Y +P +P TPG LD +W TTDIEVRI+ + D + G
Sbjct: 938 PSPST----YSPNTPGGIPQSPYNPQTPGASLDS-SMGDWCTTDIEVRIHTHD-DTDLVG 991
Query: 209 QIGVIRHLGSGVCSVYLAEEERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVD 268
Q G+IR + +GVCSV+L +E+R++SI + L PV+P D+ K+I G+ +E G +LS D
Sbjct: 992 QTGIIRTVSNGVCSVFLRQEDRSVSIVSEHLAPVLPCNGDEFKIIYGDDRESVGRVLSKD 1051
Query: 269 NGEGVVKLTEEDDVKMIDVKFLCKYK 294
V ++ EE +K++ + FLCK K
Sbjct: 1052 GDVFVCRINEE--IKLLPINFLCKMK 1075
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/163 (38%), Positives = 84/163 (51%), Gaps = 21/163 (12%)
Query: 4 GFMSPRISSPMHPSGGRGGRGGGRGGHHGGNVRRDRELIGKTIKITGGPYKVGSRTPGGG 63
GFMSPRI SPMHPSGGRG RGG RGG G V RDRE++GKTIKI+GGPYK G
Sbjct: 704 GFMSPRIQSPMHPSGGRGARGGARGGRGGFRVTRDREILGKTIKISGGPYK-------GA 756
Query: 64 ATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYSPLQ 123
+ D + ST +H + S + ++ G + G ++Y
Sbjct: 757 VGIVKDAT--------ESTARVELHTSCQTI--SVDRNHIAIVG-VTGKEGSVSTYGRTP 805
Query: 124 ASPSPSGYQSHSGVSSGSSSYLGATPSPSSEA---APYGTPSP 163
A G Q+ S ++GS + L + +P+ + PYGT +P
Sbjct: 806 ARTPGYGAQTPSYTAAGSKTPLVGSQTPNWDTDTRTPYGTMTP 848
>sp|Q9STN3|SPT51_ARATH Putative transcription elongation factor SPT5 homolog 1
OS=Arabidopsis thaliana GN=At4g08350 PE=1 SV=2
Length = 1041
Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/248 (33%), Positives = 120/248 (48%), Gaps = 24/248 (9%)
Query: 63 GATPLHDGSRTP---GPWDPSS--TPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHT 117
GATP+HDG RTP W+P + +P R D P S+ S + PG+ + E
Sbjct: 798 GATPIHDGMRTPMRDRAWNPYTPMSPPRDNWEDGNP--GSWGTSPQYQPGSPPSRAYEAP 855
Query: 118 SYSPLQASPSPSGYQSHSGVSSGSSSYLGATPSPSSEAAPYG--TPSPLSY--SSRQASP 173
+ AS +P G S +G S PSP + P TPS SY + P
Sbjct: 856 TPGSGWAS-TPGGSYSDAGTPRDHGSAYANAPSPYLPSTPGQPMTPSSASYLPGTPGGQP 914
Query: 174 FTPGTGLDQY------PTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAE 227
TPGTGLD W DI V I++ D + +GVIR + G C V L
Sbjct: 915 MTPGTGLDVMSPVIGGDAEAWFMPDILVDIHKAGEDTD----VGVIRDVSDGTCKVSLGS 970
Query: 228 --EERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMI 285
E T+ ELE + P+ +D+VK++ G+++ TG L+ +D +G+VK+ + DVK++
Sbjct: 971 SGEGDTIMALPSELEIIPPRKSDRVKIVGGQYRGSTGKLIGIDGSDGIVKIDDNLDVKIL 1030
Query: 286 DVKFLCKY 293
D+ L K+
Sbjct: 1031 DLALLAKF 1038
>sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Caenorhabditis elegans
GN=spt-5 PE=3 SV=3
Length = 1208
Score = 65.1 bits (157), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 129/308 (41%), Gaps = 77/308 (25%)
Query: 53 YKVGSRTPGGGATPLHDGSRTPGPWDPSSTPA--RSIHNDAYPMDDSFNNSY--PHTPG- 107
Y RTPG + P SRTP S TPA S H+ P ++NN Y P +P
Sbjct: 913 YDDSGRTPGYESMP----SRTPNYDSSSKTPAYPESEHSARTP---AYNNDYDIPLSPAY 965
Query: 108 -----TMYGSSSEHTSYSPLQASPSPSGYQSHSGVS--------SGSSSYLGATPSPSSE 154
Y ++ T P S +P GY ++ S + +G T SP+ +
Sbjct: 966 EPDAPEAYDNAPART---PAFVSRTP-GYDTYENSSPTYEPDAATKVEEDIGDTSSPTYD 1021
Query: 155 AAP--YGTPSPLSYSSRQ------------ASPFTPGTG--LDQYPTPE----------- 187
+ P Y P+P + + A+P TPG+G DQY P
Sbjct: 1022 SPPHSYVVPTPGAMLNPATPGAYHVDTPGFAAPMTPGSGGAYDQYVAPSPFAGYDSNNYN 1081
Query: 188 ------------------WHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEE 229
W ++ V+I ++ + F G+ +I+ + G VY+ + +
Sbjct: 1082 NADGAIEQIPDHFLAQGVWIVQNLCVQIKDH--EGRFNGREAIIKDVTDGKVDVYMPDHK 1139
Query: 230 RTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEE-DDVKMIDVK 288
L ++ +L P+ PQP D +VI G+ +G L+S+D E V++ E+ D+++I++
Sbjct: 1140 CNLEVDFDQLTPMKPQPGDDARVIFGQDAGHSGQLVSMDGFEAVIRSQEDMSDMRVINIG 1199
Query: 289 FLCKYKPE 296
CK E
Sbjct: 1200 LCCKMHSE 1207
>sp|O80770|SPT52_ARATH Putative transcription elongation factor SPT5 homolog 2
OS=Arabidopsis thaliana GN=At2g34210 PE=2 SV=2
Length = 989
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/259 (30%), Positives = 116/259 (44%), Gaps = 61/259 (23%)
Query: 63 GATPLHDGSRTP------GPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEH 116
GATP+HDG RTP P+ P S P D++ + P + GT
Sbjct: 767 GATPIHDGMRTPMRGRAWNPYMPMSPPR-----------DNWEDGNPGSWGT-------- 807
Query: 117 TSYSPLQASPSPSGYQSHSGVSSGSSSYLGA-TPSPSSEAAPYGTPSPLSYSSRQASPFT 175
SP +A+ S + S + G SSY A TP ++ A PSP++ SS P T
Sbjct: 808 ---SPYEAATPGSDWGSST---PGRSSYRDAGTPINNANA-----PSPMTPSSTSYLPTT 856
Query: 176 PGTGLDQYPTPEWHTTDIEVRINENARDPEFR---GQI------------GVIRH-LGSG 219
PG Q TP TD++V + D E R G + GVIR L G
Sbjct: 857 PGG---QAMTP---GTDLDVMSLDIGGDAETRFIPGILVNVHKAGEDRNPGVIRDVLPDG 910
Query: 220 VCSVYLAE--EERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277
C V L E T+ +++ V P+ N++VK++ G++ T ++ D +G+VKL
Sbjct: 911 SCVVALGHRGEGETIRATQNKVSLVCPKKNERVKILGGKYCGSTAKVIGEDGQDGIVKLD 970
Query: 278 EEDDVKMIDVKFLCKYKPE 296
E D+K++ + L K E
Sbjct: 971 ESLDIKILKLTILAKLVHE 989
>sp|P53253|NNF2_YEAST Protein NNF2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NNF2 PE=1 SV=1
Length = 936
Score = 37.4 bits (85), Expect = 0.13, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 96 DSFNNSYPHTPGTMYGSSSEHTSYSPLQASPSPSGYQSHSGVSSGSSSYLGATPSPSSEA 155
++ + P P G SS + + P Q + SP SHS + + ++SY P+ ++ +
Sbjct: 309 NTLEDQSPMIPNDPGGLSSSNQTIHPSQQNNSPVPLSSHSNILNPAASY----PTDATSS 364
Query: 156 APYGTPSPLSYSSRQAS 172
PY T Y S Q S
Sbjct: 365 FPYFTSMVKEYKSYQPS 381
>sp|Q4WC55|MYO1_ASPFU Myosin-1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS
101355 / FGSC A1100) GN=myoA PE=3 SV=2
Length = 1249
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 85 RSIHNDAYPMDDSFNNSYPHT-PGTMYGSSSEHTSYSPLQASPSP--SGYQSHSGVSSGS 141
+ + + A DDS+ + HT PG S S+ T P Q S P G G G
Sbjct: 952 KVVKDPAVARDDSYKSGTIHTGPGEPANSVSKPTP-RPKQVSARPVTKGKLLRPGGPGGG 1010
Query: 142 SSYLGATPSPSSEAAPYGTPSP 163
S L A P+P+++ P TP P
Sbjct: 1011 PSKLAARPTPAAQPLPRATPQP 1032
>sp|B0Y9Q4|MYO1_ASPFC Myosin-1 OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC
A1163) GN=myoA PE=3 SV=2
Length = 1249
Score = 33.9 bits (76), Expect = 1.6, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 85 RSIHNDAYPMDDSFNNSYPHT-PGTMYGSSSEHTSYSPLQASPSP--SGYQSHSGVSSGS 141
+ + + A DDS+ + HT PG S S+ T P Q S P G G G
Sbjct: 952 KVVKDPAVARDDSYKSGTIHTGPGEPANSVSKPTP-RPKQVSARPVTKGKLLRPGGPGGG 1010
Query: 142 SSYLGATPSPSSEAAPYGTPSP 163
S L A P+P+++ P TP P
Sbjct: 1011 PSKLAARPTPAAQPLPRATPQP 1032
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.132 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 139,903,662
Number of Sequences: 539616
Number of extensions: 7383092
Number of successful extensions: 39412
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 918
Number of HSP's that attempted gapping in prelim test: 32611
Number of HSP's gapped (non-prelim): 5732
length of query: 296
length of database: 191,569,459
effective HSP length: 117
effective length of query: 179
effective length of database: 128,434,387
effective search space: 22989755273
effective search space used: 22989755273
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)