Query psy13744
Match_columns 296
No_of_seqs 150 out of 212
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 19:25:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13744.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13744hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ckk_A KIN17; beta barrel, rib 100.0 2E-31 6.7E-36 223.4 13.4 108 187-294 13-127 (127)
2 2e70_A Transcription elongatio 98.7 1.1E-08 3.7E-13 78.0 3.8 29 26-54 4-32 (71)
3 2do3_A Transcription elongatio 97.0 0.00093 3.2E-08 50.6 5.4 56 228-284 3-59 (69)
4 2e6z_A Transcription elongatio 96.7 0.0018 6.1E-08 47.0 4.6 51 243-293 7-59 (59)
5 1nz9_A Transcription antitermi 96.5 0.0033 1.1E-07 44.8 4.9 51 243-293 4-58 (58)
6 3h8z_A FragIle X mental retard 96.5 0.035 1.2E-06 46.3 11.7 100 190-293 3-117 (128)
7 2jz2_A SSL0352 protein; SH3-li 96.4 0.01 3.5E-07 44.2 7.0 54 189-244 2-57 (66)
8 1vq8_T 50S ribosomal protein L 96.1 0.0065 2.2E-07 50.3 5.0 34 244-277 43-76 (120)
9 3j21_U 50S ribosomal protein L 95.9 0.0078 2.7E-07 49.9 4.8 33 245-277 47-79 (121)
10 2zjr_R 50S ribosomal protein L 95.7 0.0091 3.1E-07 49.0 4.4 33 245-277 17-49 (115)
11 2e70_A Transcription elongatio 95.5 0.03 1E-06 42.5 6.2 50 244-293 18-67 (71)
12 3v2d_Y 50S ribosomal protein L 95.5 0.012 4E-07 48.1 4.2 33 245-277 8-40 (110)
13 3r8s_U 50S ribosomal protein L 95.5 0.016 5.4E-07 46.7 4.8 32 245-277 5-36 (102)
14 3iz5_Y 60S ribosomal protein L 95.4 0.017 5.8E-07 49.5 4.9 33 245-277 50-82 (150)
15 4a17_S RPL26, 60S ribosomal pr 95.4 0.019 6.3E-07 48.5 5.0 33 245-277 50-82 (135)
16 3u5e_Y L33, YL33, 60S ribosoma 95.3 0.013 4.6E-07 48.9 4.1 33 245-277 51-83 (127)
17 2zkr_t 60S ribosomal protein L 95.3 0.017 6E-07 49.2 4.7 33 245-277 50-83 (145)
18 2ftc_N Mitochondrial ribosomal 95.3 0.024 8.4E-07 45.1 5.2 30 247-276 1-30 (96)
19 3p8b_B Transcription antitermi 95.2 0.035 1.2E-06 46.4 6.3 54 242-295 90-147 (152)
20 2qqr_A JMJC domain-containing 93.9 0.39 1.3E-05 39.5 9.4 92 199-293 14-113 (118)
21 2jvv_A Transcription antitermi 93.0 0.079 2.7E-06 45.3 4.1 50 244-293 128-181 (181)
22 3bbo_W Ribosomal protein L24; 92.7 0.014 4.7E-07 51.9 -1.2 30 245-274 70-99 (191)
23 2do3_A Transcription elongatio 91.9 0.49 1.7E-05 35.6 6.7 51 187-241 16-66 (69)
24 2xdp_A Lysine-specific demethy 90.0 0.54 1.9E-05 39.0 5.9 91 200-293 16-114 (123)
25 2e6z_A Transcription elongatio 87.0 1.5 5E-05 31.4 5.8 49 189-241 8-58 (59)
26 2xhc_A Transcription antitermi 85.8 0.92 3.1E-05 43.3 5.4 50 244-293 299-352 (352)
27 3iz6_D 40S ribosomal protein S 84.4 2.2 7.5E-05 39.5 7.1 50 229-278 157-212 (265)
28 3qr8_A GPV, baseplate assembly 84.4 5.9 0.0002 34.5 9.6 58 209-267 19-84 (211)
29 1qp2_A Protein (PSAE protein); 84.2 3.4 0.00012 31.1 6.7 57 189-247 2-66 (70)
30 1m1h_A Transcription antitermi 82.0 0.27 9.4E-06 44.8 0.0 52 241-292 192-247 (248)
31 3kbg_A 30S ribosomal protein S 80.9 5.6 0.00019 35.7 8.1 71 206-277 94-176 (213)
32 1nz9_A Transcription antitermi 80.3 5.1 0.00017 27.9 6.2 49 189-241 5-57 (58)
33 3u5c_E RP5, S7, YS6, 40S ribos 79.3 2.4 8.2E-05 39.2 5.3 50 229-278 157-212 (261)
34 2xk0_A Polycomb protein PCL; t 77.3 5.4 0.00018 30.0 5.7 47 187-240 16-62 (69)
35 2equ_A PHD finger protein 20-l 74.9 7.2 0.00025 29.2 6.0 52 242-294 8-60 (74)
36 4a4f_A SurviVal of motor neuro 74.8 4.1 0.00014 29.2 4.5 52 187-242 8-61 (64)
37 2xzm_W 40S ribosomal protein S 74.6 9 0.00031 35.3 7.7 50 229-278 159-214 (260)
38 3p8b_B Transcription antitermi 74.5 8.2 0.00028 31.8 6.9 51 189-243 92-146 (152)
39 1jb0_E Photosystem 1 reaction 74.0 4.3 0.00015 30.9 4.5 34 245-278 2-42 (75)
40 3p8d_A Medulloblastoma antigen 72.0 9.5 0.00033 28.3 5.9 49 245-294 8-57 (67)
41 3j20_E 30S ribosomal protein S 71.5 5.1 0.00018 36.6 5.3 72 206-277 131-216 (243)
42 3gox_A Restriction endonucleas 69.7 11 0.00036 33.6 6.7 46 197-242 19-64 (200)
43 1g5v_A SurviVal motor neuron p 69.2 5.1 0.00017 31.0 4.1 55 187-245 10-66 (88)
44 2m0o_A PHD finger protein 1; t 67.6 26 0.00089 26.9 7.6 48 187-241 27-76 (79)
45 2lcd_A AT-rich interactive dom 69.3 1.3 4.3E-05 36.6 0.0 96 187-291 5-104 (118)
46 1qp2_A Protein (PSAE protein); 65.5 8.5 0.00029 29.0 4.5 34 245-278 3-42 (70)
47 2d9t_A Tudor domain-containing 65.4 12 0.0004 27.9 5.4 55 187-245 9-65 (78)
48 3h0g_A DNA-directed RNA polyme 65.2 1.3 4.5E-05 50.3 0.0 12 6-17 1483-1494(1752)
49 1mhn_A SurviVal motor neuron p 65.0 10 0.00034 26.6 4.6 54 187-244 3-58 (59)
50 2xk0_A Polycomb protein PCL; t 64.6 20 0.00067 26.9 6.3 50 245-295 17-66 (69)
51 2equ_A PHD finger protein 20-l 64.4 6.4 0.00022 29.5 3.7 54 187-246 9-63 (74)
52 3i4o_A Translation initiation 63.5 9.6 0.00033 29.0 4.6 57 209-265 16-75 (79)
53 2jvv_A Transcription antitermi 62.4 17 0.00057 30.6 6.4 50 188-241 127-180 (181)
54 3p8d_A Medulloblastoma antigen 62.1 15 0.00052 27.2 5.3 54 187-246 6-60 (67)
55 3pnw_C Tudor domain-containing 61.8 23 0.00079 26.3 6.4 52 244-295 18-72 (77)
56 4a4f_A SurviVal of motor neuro 61.5 31 0.001 24.5 6.8 53 242-294 7-62 (64)
57 2k52_A Uncharacterized protein 61.2 41 0.0014 24.4 7.7 56 210-276 10-68 (80)
58 1ah9_A IF1, initiation factor 61.0 27 0.00093 25.3 6.6 45 210-254 9-56 (71)
59 2d9t_A Tudor domain-containing 60.9 24 0.0008 26.2 6.3 52 243-294 9-63 (78)
60 2oqk_A Putative translation in 58.0 28 0.00097 27.9 6.8 59 210-268 35-95 (117)
61 2khi_A 30S ribosomal protein S 57.0 63 0.0022 25.1 8.6 57 209-276 34-98 (115)
62 1mhn_A SurviVal motor neuron p 56.8 40 0.0014 23.4 6.6 53 244-296 4-59 (59)
63 2ckk_A KIN17; beta barrel, rib 56.7 17 0.00058 29.7 5.3 46 191-240 73-124 (127)
64 2k5h_A Conserved protein; stru 56.0 57 0.0019 25.3 8.1 57 204-268 38-96 (101)
65 3s6w_A Tudor domain-containing 56.0 17 0.00057 24.9 4.4 39 202-242 14-54 (54)
66 3qii_A PHD finger protein 20; 54.9 22 0.00075 27.6 5.3 53 187-245 21-74 (85)
67 1g5v_A SurviVal motor neuron p 54.1 41 0.0014 25.8 6.8 51 243-293 10-63 (88)
68 4hcz_A PHD finger protein 1; p 53.9 24 0.00082 25.6 5.0 47 188-241 5-53 (58)
69 3fdr_A Tudor and KH domain-con 53.7 32 0.0011 25.7 6.1 53 241-294 25-80 (94)
70 2eqk_A Tudor domain-containing 53.1 15 0.0005 28.6 4.1 55 187-245 21-76 (85)
71 1ib8_A Conserved protein SP14. 51.2 18 0.0006 30.7 4.7 48 246-293 103-156 (164)
72 3qii_A PHD finger protein 20; 51.2 35 0.0012 26.4 5.9 52 242-294 20-72 (85)
73 3iz5_N 60S ribosomal protein L 51.0 14 0.00049 30.8 4.0 45 245-290 8-53 (134)
74 2ldm_A Uncharacterized protein 55.5 3.4 0.00012 31.8 0.0 37 203-242 19-56 (81)
75 2fhd_A RAD9 homolog, DNA repai 49.6 43 0.0015 28.6 6.7 52 201-253 18-73 (153)
76 3izc_N 60S ribosomal protein R 48.6 15 0.0005 30.9 3.7 45 245-290 16-63 (138)
77 2exd_A NFED short homolog; mem 48.4 82 0.0028 23.5 7.6 45 204-254 14-58 (80)
78 1ssf_A Transformation related 48.1 1.3E+02 0.0045 25.7 10.6 83 210-294 27-121 (156)
79 4e8b_A Ribosomal RNA small sub 46.0 18 0.00063 32.3 4.2 48 229-276 15-66 (251)
80 1vhy_A Hypothetical protein HI 46.0 20 0.00067 32.3 4.4 42 237-278 28-70 (257)
81 1y96_A Gemin6, SIP2, GEM-assoc 45.8 21 0.00071 27.7 3.9 31 246-276 16-46 (86)
82 1ts9_A Ribonuclease P protein 44.2 1E+02 0.0036 24.2 7.9 36 187-225 14-49 (102)
83 3fdr_A Tudor and KH domain-con 43.1 26 0.0009 26.2 4.1 54 187-244 27-81 (94)
84 2joy_A 50S ribosomal protein L 42.2 29 0.00099 27.0 4.3 44 245-290 5-54 (96)
85 3mxn_B RECQ-mediated genome in 41.7 88 0.003 26.6 7.4 41 210-254 64-109 (150)
86 3kw2_A Probable R-RNA methyltr 41.3 21 0.0007 32.3 3.8 42 236-277 24-66 (257)
87 1vq8_T 50S ribosomal protein L 41.3 38 0.0013 27.7 5.0 55 189-247 43-105 (120)
88 1luz_A Protein K3, protein K2; 41.1 71 0.0024 23.9 6.3 55 209-276 15-79 (88)
89 1vhk_A Hypothetical protein YQ 40.7 23 0.00078 32.0 4.0 41 237-277 29-70 (268)
90 4hcz_A PHD finger protein 1; p 40.0 1E+02 0.0034 22.3 6.5 49 245-294 5-55 (58)
91 2wsc_E PSAE, PSI-E A, photosys 38.4 3.7 0.00013 34.4 -1.5 40 239-278 76-122 (143)
92 2k4k_A GSP13, general stress p 38.0 1.4E+02 0.0047 23.8 7.9 56 210-276 12-74 (130)
93 2eqj_A Metal-response element- 37.5 94 0.0032 23.0 6.1 47 190-241 15-63 (66)
94 2heq_A YORP protein; SH3-like, 37.4 1.2E+02 0.0041 23.0 6.8 60 181-242 4-69 (84)
95 1z85_A Hypothetical protein TM 36.8 29 0.001 30.9 4.0 40 236-276 33-73 (234)
96 2joy_A 50S ribosomal protein L 36.4 76 0.0026 24.5 5.9 34 189-226 4-38 (96)
97 1gxi_E Photosystem I reaction 36.0 9.8 0.00034 28.8 0.6 34 245-278 3-42 (73)
98 3iz5_N 60S ribosomal protein L 35.5 95 0.0033 25.8 6.6 31 189-223 7-38 (134)
99 2wac_A CG7008-PA; unknown func 35.4 40 0.0014 28.3 4.4 40 203-244 65-104 (218)
100 4a18_F RPL14; ribosome, eukary 34.6 20 0.00069 29.7 2.3 29 246-274 9-38 (126)
101 3s6w_A Tudor domain-containing 34.5 1E+02 0.0036 20.7 5.7 48 245-292 3-53 (54)
102 2jng_A Cullin-7, CUL-7; P53 bi 34.5 1.6E+02 0.0055 23.6 7.5 62 189-252 22-86 (105)
103 1cn3_F Fragment of coat protei 34.0 21 0.00073 22.1 1.8 16 23-38 3-18 (29)
104 2eqj_A Metal-response element- 33.8 1.2E+02 0.0041 22.4 6.2 48 244-292 14-63 (66)
105 4a18_N RPL27, ribosomal protei 33.5 28 0.00097 29.4 3.1 24 246-269 7-31 (144)
106 3pnw_C Tudor domain-containing 33.4 55 0.0019 24.2 4.4 55 187-245 17-73 (77)
107 2khj_A 30S ribosomal protein S 33.0 1.6E+02 0.0055 22.4 7.4 57 209-276 35-98 (109)
108 3j21_5 50S ribosomal protein L 32.6 48 0.0016 25.2 4.0 27 244-270 4-31 (83)
109 2diq_A Tudor and KH domain-con 32.2 64 0.0022 24.8 4.8 52 242-293 31-84 (110)
110 2diq_A Tudor and KH domain-con 31.2 30 0.001 26.7 2.7 54 187-244 32-86 (110)
111 3pgw_B SM B; protein-RNA compl 30.8 47 0.0016 30.1 4.3 25 247-271 14-38 (231)
112 4a18_F RPL14; ribosome, eukary 30.2 1.1E+02 0.0038 25.2 6.1 48 189-241 7-55 (126)
113 1v6z_A Hypothetical protein TT 30.2 42 0.0014 29.5 3.8 40 236-277 20-60 (228)
114 2z1c_A Hydrogenase expression/ 30.2 98 0.0034 23.1 5.3 42 210-255 6-47 (75)
115 2k75_A Uncharacterized protein 30.0 1.2E+02 0.0041 23.3 6.1 12 245-256 61-72 (106)
116 3fb9_A Uncharacterized protein 29.8 1.2E+02 0.0042 23.6 6.0 45 246-290 24-79 (90)
117 2egv_A UPF0088 protein AQ_165; 29.8 33 0.0011 30.2 3.1 40 236-277 21-61 (229)
118 2zkr_t 60S ribosomal protein L 29.5 50 0.0017 27.8 4.0 55 189-247 49-112 (145)
119 3d0f_A Penicillin-binding 1 tr 29.5 52 0.0018 25.2 3.9 33 209-242 37-69 (106)
120 3pgw_B SM B; protein-RNA compl 29.0 97 0.0033 28.0 6.0 41 187-234 11-51 (231)
121 2xhc_A Transcription antitermi 28.6 86 0.003 29.7 5.9 49 189-241 299-351 (352)
122 3izc_N 60S ribosomal protein R 28.6 1.3E+02 0.0045 25.1 6.4 32 188-223 14-46 (138)
123 2zae_A Ribonuclease P protein 28.4 1.6E+02 0.0056 24.1 6.9 36 187-225 47-82 (127)
124 1v76_A RNAse P protein PH1771P 28.2 1.9E+02 0.0066 22.3 6.9 36 187-225 16-51 (96)
125 2wac_A CG7008-PA; unknown func 27.8 1.2E+02 0.0041 25.2 6.2 51 242-293 50-102 (218)
126 3aev_A Translation initiation 27.3 2.3E+02 0.0079 25.7 8.4 58 210-277 16-81 (275)
127 3j21_U 50S ribosomal protein L 26.8 82 0.0028 25.7 4.7 25 189-217 46-70 (121)
128 2id0_A Exoribonuclease 2; RNAs 26.4 1.4E+02 0.0047 30.3 7.3 30 210-239 565-594 (644)
129 1zq1_A Glutamyl-tRNA(Gln) amid 25.0 26 0.0009 34.2 1.7 44 239-282 7-57 (438)
130 3pqi_A Gene product 138; beta- 24.8 1.6E+02 0.0056 26.6 6.8 55 209-264 27-100 (247)
131 2a19_A EIF-2- alpha, eukaryoti 24.6 3.1E+02 0.011 23.0 9.1 57 210-276 20-84 (175)
132 2zjr_R 50S ribosomal protein L 23.9 64 0.0022 26.0 3.5 32 189-224 16-49 (115)
133 3j21_5 50S ribosomal protein L 23.8 85 0.0029 23.8 4.0 50 189-242 4-56 (83)
134 1wi5_A RRP5 protein homolog; S 23.7 1.8E+02 0.0062 22.4 6.2 18 209-226 25-42 (119)
135 2d6f_A Glutamyl-tRNA(Gln) amid 23.5 27 0.00092 34.1 1.4 43 239-282 11-57 (435)
136 2k14_A YUAF protein; NFED-like 23.1 1.7E+02 0.0058 21.4 5.6 48 205-254 19-70 (84)
137 1rl2_A Protein (ribosomal prot 22.6 68 0.0023 26.6 3.5 35 258-293 98-132 (137)
138 3cp0_A Membrane protein implic 22.0 1.6E+02 0.0056 21.3 5.3 48 204-254 22-70 (82)
139 2dgy_A MGC11102 protein; EIF-1 21.7 3E+02 0.01 21.8 7.7 49 209-257 17-67 (111)
140 2ftc_B Mitochondrial ribosomal 21.7 69 0.0024 26.6 3.4 33 258-291 85-117 (136)
141 1hr0_W Translation initiation 21.4 34 0.0012 24.8 1.3 46 209-254 9-57 (71)
142 1d7q_A Translation initiation 21.3 2.5E+02 0.0086 23.4 6.8 59 209-267 33-93 (143)
143 2jz2_A SSL0352 protein; SH3-li 20.4 1.9E+02 0.0065 21.3 5.1 48 246-293 4-55 (66)
No 1
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=223.43 Aligned_cols=108 Identities=18% Similarity=0.334 Sum_probs=98.7
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEec-CCeEEEEeCCCCeeeeeeCCceeEcCCCCCCeEEEEeCCCCCceEEEE
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLG-SGVCSVYLAEEERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLL 265 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~-~g~c~V~L~d~~~vv~V~q~~LEtViP~kGd~VkVI~Ge~RG~tG~Li 265 (296)
+||++||+|||+++..+..||++||||++|. +++|.|+|.+++++++|+|++||||+|++|++|+||+|+|||++|+|+
T Consensus 13 ~Wl~~~I~Vrii~k~~~~g~y~~KgvV~~V~~~~~c~V~l~~~g~~v~v~q~~LETViP~~g~~V~Iv~G~~rG~~g~L~ 92 (127)
T 2ckk_A 13 YWLQPEIIVKIITKKLGEKYHKKKAIVKEVIDKYTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVLNGGYRGNEGTLE 92 (127)
T ss_dssp CCCCTTBEEEECCSTTCGGGTTCEEEEEEEETTTEEEEEETTTCCEEEEEGGGEEECCCCTTCEEEECSSTTTTCEEEEE
T ss_pred CcccCCeEEEEEEccCCCcccCceEEEEEecCCCeEEEEECCCCCEEEEchHHcEEecCCCCCEEEEEecccCCcEEEEE
Confidence 7999999999997655545999999999995 699999999999999999999999999999999999999999999999
Q ss_pred EEeCC--CcEEEEcCC----CceeEeecchhhccC
Q psy13744 266 SVDNG--EGVVKLTEE----DDVKMIDVKFLCKYK 294 (296)
Q Consensus 266 sID~~--dgiVkld~~----~d~kil~~~~L~Kl~ 294 (296)
+||.+ +++|+|+++ ..+++|+|++||||+
T Consensus 93 ~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~k~~ 127 (127)
T 2ckk_A 93 SINEKTFSATIVIETGPLKGRRVEGIQYEDISKLA 127 (127)
T ss_dssp EEEGGGTEEEEEECSSTTTTCEEEEEEGGGEEEBC
T ss_pred EEeCCCcEEEEEEccCCCCCCEEEeeCHHHhhccC
Confidence 99988 789999863 357789999999985
No 2
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.68 E-value=1.1e-08 Score=78.03 Aligned_cols=29 Identities=55% Similarity=0.995 Sum_probs=24.4
Q ss_pred CCCCcCCCCCccccccccceEEecCCccC
Q psy13744 26 GRGGHHGGNVRRDRELIGKTIKITGGPYK 54 (296)
Q Consensus 26 ~~~g~~~~~~rrd~~liG~tvkI~~GpyK 54 (296)
|++|++++|++||+.||||||+|++||||
T Consensus 4 ~~gG~~~gr~~grd~liGktV~I~kGpyK 32 (71)
T 2e70_A 4 GSSGMSRGRGRRDNELIGQTVRISQGPYK 32 (71)
T ss_dssp CCSCCCCCSSCCTTSSTTSEEEECSSTTT
T ss_pred CcCCcCCCCCcCccccCCCEEEEeccCCC
Confidence 44455566788999999999999999999
No 3
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=97.03 E-value=0.00093 Score=50.57 Aligned_cols=56 Identities=23% Similarity=0.319 Sum_probs=41.4
Q ss_pred CCeeeeeeCCceeEcCCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEcCC-CceeE
Q psy13744 228 EERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEE-DDVKM 284 (296)
Q Consensus 228 ~~~vv~V~q~~LEtViP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld~~-~d~ki 284 (296)
++..++++.++|.-.. +.||+||||.|.|.|.+|.++.||++..+|--|.. .++++
T Consensus 3 ~~~~i~~p~~~LrK~F-~~GDHVkVi~G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V 59 (69)
T 2do3_A 3 SGSSGEFPAQELRKYF-KMGDHVKVIAGRFEGDTGLIVRVEENFVILFSDLTMHELKV 59 (69)
T ss_dssp SCSCCCCCCCCCCSSC-CTTCEEEESSSTTTTCEEEEEEECSSCEEEEESSSCSEEEE
T ss_pred CCcEEEEcHHHceeec-cCCCeEEEeccEEcCceEEEEEEeCCEEEEEeCCCCCEEEE
Confidence 4556667777776444 45999999999999999999999977666644443 34554
No 4
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.71 E-value=0.0018 Score=46.96 Aligned_cols=51 Identities=31% Similarity=0.361 Sum_probs=38.1
Q ss_pred CCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEcC-C-CceeEeecchhhcc
Q psy13744 243 MPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTE-E-DDVKMIDVKFLCKY 293 (296)
Q Consensus 243 iP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld~-~-~d~kil~~~~L~Kl 293 (296)
..++||.|+|+.|++.|..|++.++|.+.-.|.++. + ....-|++.+|.|+
T Consensus 7 ~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~~fg~~tpvel~~~qv~K~ 59 (59)
T 2e6z_A 7 GFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRKY 59 (59)
T ss_dssp SCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEECCSSCCSCEEEETTTEEEC
T ss_pred cCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEEecCCCceEEEcHHHEEEC
Confidence 457899999999999999999999998744444431 2 22334888888774
No 5
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=96.53 E-value=0.0033 Score=44.83 Aligned_cols=51 Identities=24% Similarity=0.367 Sum_probs=37.1
Q ss_pred CCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEE--EcC-CCcee-Eeecchhhcc
Q psy13744 243 MPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVK--LTE-EDDVK-MIDVKFLCKY 293 (296)
Q Consensus 243 iP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVk--ld~-~~d~k-il~~~~L~Kl 293 (296)
.-++||+|+|+.|.+.|..|++..+|.+...|+ ++- +.... -|++++|-|+
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek~ 58 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVKA 58 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEEC
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEEC
Confidence 346899999999999999999999998875554 332 22222 2777776553
No 6
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=96.50 E-value=0.035 Score=46.34 Aligned_cols=100 Identities=10% Similarity=0.193 Sum_probs=70.4
Q ss_pred cCceEEEEecCCCCccccCCeEEEEEecCCeEEEEeCCC-CeeeeeeCCceeEcCC-------CCCCeEEEEeC-CC-CC
Q psy13744 190 TTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEE-ERTLSIEAHELEPVMP-------QPNDKVKVIVG-EH-KE 259 (296)
Q Consensus 190 ~~dI~VkI~~~~~d~~yygqkGVVrsV~~g~c~V~L~d~-~~vv~V~q~~LEtViP-------~kGd~VkVI~G-e~-RG 259 (296)
.+++.|.|+. +++.||+ |.|++|.+..|.|.+.++ ....+|+.++|.++.| ..||+|.|..= ++ -.
T Consensus 3 ~~~~~VEV~~--~~G~~y~--a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRlpP~~~~~~~f~~gd~VEV~~~~~d~ep 78 (128)
T 3h8z_A 3 FQGLPVEVRG--SNGAFYK--GFVKDVHEDSVTIFFENNWQSERQIPFGDVRLPPPADYNKEITEGDEVEVYSRANEQEP 78 (128)
T ss_dssp TTTCEEEEEC--TTSCEEE--EEEEEECSSEEEEEETTCTTCCEEEEGGGEECCCCC----CCCTTCEEEEEECC---CC
T ss_pred ccccEEEEec--CCCCEEE--EEEEEEeCCcEEEEEccccCcceEechhhEEcCCCcccccCCCCCCEEEEEecCCCCCc
Confidence 4678888874 3467775 999999989999998654 3357889999998776 57999999872 22 22
Q ss_pred ---ceEEEEEEeCCCcEEEEcC-C-CceeEeecchhhcc
Q psy13744 260 ---CTGVLLSVDNGEGVVKLTE-E-DDVKMIDVKFLCKY 293 (296)
Q Consensus 260 ---~tG~LisID~~dgiVkld~-~-~d~kil~~~~L~Kl 293 (296)
-.|+++.+-++-.+|..+. + .--.|+.++.|-.+
T Consensus 79 ~gWw~a~I~~~kg~f~~V~y~~~~~~~~EiV~~~rlR~~ 117 (128)
T 3h8z_A 79 CGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERLRPV 117 (128)
T ss_dssp CEEEEEEEEEEETTEEEEEETTC----CEEECGGGEEEC
T ss_pred CccEEEEEEEeeCCEEEEEEcCCCCCcceEEehhheEeC
Confidence 3689999998888888432 1 11446776666444
No 7
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=96.42 E-value=0.01 Score=44.23 Aligned_cols=54 Identities=19% Similarity=0.359 Sum_probs=44.9
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEecCCeEEEEeCCC--CeeeeeeCCceeEcCC
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEE--ERTLSIEAHELEPVMP 244 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~~g~c~V~L~d~--~~vv~V~q~~LEtViP 244 (296)
+.++..|+|++.. .-||+-+|.|.+|+|+.+.|-+... ++.|+..-++||.|-.
T Consensus 2 ilPG~~V~V~np~--~~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~~~~ 57 (66)
T 2jz2_A 2 IFPGATVRVTNVD--DTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEAVKP 57 (66)
T ss_dssp CCTTCEEEECCTT--STTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEECCC
T ss_pred ccCCCEEEEeCCC--CcccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHceeccc
Confidence 5688999998532 3699999999999999998877443 7999999999999854
No 8
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=96.09 E-value=0.0065 Score=50.34 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=30.3
Q ss_pred CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 244 PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 244 P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
=++||.|+||.|.|+|.+|+++.||..++.|-++
T Consensus 43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VE 76 (120)
T 1vq8_T 43 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVE 76 (120)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred ccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEe
Confidence 3679999999999999999999999988877654
No 9
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.94 E-value=0.0078 Score=49.92 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=29.7
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
++||+|+||.|.|+|..|+++.|+..+..|-++
T Consensus 47 kkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VE 79 (121)
T 3j21_U 47 RVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVE 79 (121)
T ss_dssp CSSSEEEECSSSCSSEEEEEEEEETTTTEEEET
T ss_pred ccCCEEEEeecCCCCcEeEEEEEEecCCEEEEe
Confidence 589999999999999999999999887777654
No 10
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=95.73 E-value=0.0091 Score=48.98 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=29.2
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
++||+|+||.|+++|.+|+++.|+.....|-++
T Consensus 17 kkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VE 49 (115)
T 2zjr_R 17 KKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE 49 (115)
T ss_dssp CTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred cCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEe
Confidence 579999999999999999999999887766554
No 11
>2e70_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.53 E-value=0.03 Score=42.49 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=41.4
Q ss_pred CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEcCCCceeEeecchhhcc
Q psy13744 244 PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFLCKY 293 (296)
Q Consensus 244 P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld~~~d~kil~~~~L~Kl 293 (296)
+.+|..|+|.+|.|.|..|.++.+++..+-|.|++.....-++.++|.-+
T Consensus 18 ~liGktV~I~kGpyKG~~GiVkd~t~~~~RVELhs~~K~VtV~r~~l~~~ 67 (71)
T 2e70_A 18 ELIGQTVRISQGPYKGYIGVVKDATESTARVELHSTCQTISVDRQRLTTV 67 (71)
T ss_dssp SSTTSEEEECSSTTTTCEEEEEEECSSCEEEEESSSCCEEEECTTTEEEC
T ss_pred ccCCCEEEEeccCCCCeEEEEEECCCCeEEEEecCCceEEEEEhhhcccc
Confidence 45799999999999999999999999999999987654445777777543
No 12
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=95.49 E-value=0.012 Score=48.06 Aligned_cols=33 Identities=24% Similarity=0.177 Sum_probs=28.4
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
++||+|+||.|.++|..|+++.|+.....|-++
T Consensus 8 kkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVE 40 (110)
T 3v2d_Y 8 KKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVE 40 (110)
T ss_dssp CTTSEEEECSSTTTTCEEEEEEEEGGGTEEEET
T ss_pred CCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEe
Confidence 579999999999999999999999876655443
No 13
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=95.47 E-value=0.016 Score=46.68 Aligned_cols=32 Identities=28% Similarity=0.396 Sum_probs=27.9
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
++||+|+||.|+++|.+|+++.++.. ..|-++
T Consensus 5 kkGD~V~Vi~GkdKGk~GkV~~V~~~-~~ViVe 36 (102)
T 3r8s_U 5 RRDDEVIVLTGKDKGKRGKVKNVLSS-GKVIVE 36 (102)
T ss_dssp CSSCEEEECSSSSTTCEEEEEEEETT-TEEEET
T ss_pred cCCCEEEEeEcCCCCeeeEEEEEEeC-CEEEEe
Confidence 57999999999999999999999987 655444
No 14
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=95.36 E-value=0.017 Score=49.54 Aligned_cols=33 Identities=24% Similarity=0.374 Sum_probs=29.6
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
++||.|+||.|.|+|.+|+++.|+..++.|-++
T Consensus 50 kKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VE 82 (150)
T 3iz5_Y 50 RKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVE 82 (150)
T ss_dssp CSSSEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred CCCCEEEEeecCCCCccceEEEEEcCCCEEEEe
Confidence 689999999999999999999999987776554
No 15
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=95.35 E-value=0.019 Score=48.55 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=29.6
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
++||.|+||.|.|+|.+|+++.|+..++.|-++
T Consensus 50 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 82 (135)
T 4a17_S 50 RKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVE 82 (135)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEETTTTEEEET
T ss_pred cCCCEEEEeecCCCCceeeEEEEEcCCCEEEEe
Confidence 689999999999999999999999987776554
No 16
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=95.34 E-value=0.013 Score=48.94 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=28.8
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
++||.|+||.|.|+|.+|+++.|+..++.|-++
T Consensus 51 kkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VE 83 (127)
T 3u5e_Y 51 RRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVD 83 (127)
T ss_dssp CTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEE
T ss_pred cCCCEEEEeecCCCCccceEEEEECCCCEEEEe
Confidence 689999999999999999999999877665443
No 17
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=95.30 E-value=0.017 Score=49.20 Aligned_cols=33 Identities=24% Similarity=0.365 Sum_probs=29.8
Q ss_pred CCCCeEEEEeCCCCCce-EEEEEEeCCCcEEEEc
Q psy13744 245 QPNDKVKVIVGEHKECT-GVLLSVDNGEGVVKLT 277 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~t-G~LisID~~dgiVkld 277 (296)
++||.|+||.|.|+|.+ |+++.||...+.|-++
T Consensus 50 kkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VE 83 (145)
T 2zkr_t 50 RKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIE 83 (145)
T ss_dssp CTTCEEEECSSTTTTCCSEEEEEEETTTTEEEET
T ss_pred CCCCEEEEeecCCCCcceeEEEEEECCCCEEEEe
Confidence 57999999999999999 9999999888777654
No 18
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=95.26 E-value=0.024 Score=45.09 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCeEEEEeCCCCCceEEEEEEeCCCcEEEE
Q psy13744 247 NDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276 (296)
Q Consensus 247 Gd~VkVI~Ge~RG~tG~LisID~~dgiVkl 276 (296)
||+|+||.|+++|.+|+++.++..+..|-+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViV 30 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVV 30 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEE
Confidence 799999999999999999999987665544
No 19
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=95.19 E-value=0.035 Score=46.38 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=41.1
Q ss_pred cCCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEE--cC-CCc-eeEeecchhhccCC
Q psy13744 242 VMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL--TE-EDD-VKMIDVKFLCKYKP 295 (296)
Q Consensus 242 ViP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl--d~-~~d-~kil~~~~L~Kl~~ 295 (296)
+..++||+|+|+.|.+.|..|+++.+|.+...|++ +- +.. -.-|++++|-|+..
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~~ 147 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLISK 147 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEEC
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEecc
Confidence 34567999999999999999999999998776654 22 222 33488888888753
No 20
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=93.86 E-value=0.39 Score=39.53 Aligned_cols=92 Identities=9% Similarity=0.053 Sum_probs=56.6
Q ss_pred cCCCCccccCCeEEEEEec-CCeEEEEeCCCCeeeeeeCCc------eeEcCCCCCCeEEEEeCCCCCceEEEEEE-eCC
Q psy13744 199 ENARDPEFRGQIGVIRHLG-SGVCSVYLAEEERTLSIEAHE------LEPVMPQPNDKVKVIVGEHKECTGVLLSV-DNG 270 (296)
Q Consensus 199 ~~~~d~~yygqkGVVrsV~-~g~c~V~L~d~~~vv~V~q~~------LEtViP~kGd~VkVI~Ge~RG~tG~LisI-D~~ 270 (296)
.++.+++|| +|.|+++. .-+|.|.+.|..---.+..+. ++-=.|..|.+|+|..=+-.=.-|+.++. ...
T Consensus 14 akh~ngryy--~~~V~~~~~~~~y~V~F~DgS~s~dl~peDIvs~dc~~~GpP~~G~~V~V~W~DG~~y~a~f~g~~~~~ 91 (118)
T 2qqr_A 14 SKHKNGRFY--QCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQDCLQFGPPAEGEVVQVRWTDGQVYGAKFVASHPIQ 91 (118)
T ss_dssp EECTTSSEE--EEEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCEEEEEEEEEEEEE
T ss_pred EECCCCCEE--eEEEEEEeeEEEEEEEcCCCCccCCCCHhhcccccccccCCCCCCCEEEEEcCCCCEeeeEEeceeEEE
Confidence 356678888 78999885 467788888753333333332 33357999999999983333345666664 334
Q ss_pred CcEEEEcCCCceeEeecchhhcc
Q psy13744 271 EGVVKLTEEDDVKMIDVKFLCKY 293 (296)
Q Consensus 271 dgiVkld~~~d~kil~~~~L~Kl 293 (296)
...|.++++. ...+.=++|..+
T Consensus 92 ~Y~V~feDgs-~~~~kR~~iyt~ 113 (118)
T 2qqr_A 92 MYQVEFEDGS-QLVVKRDDVYTL 113 (118)
T ss_dssp EEEEEETTSC-EEEECGGGEEET
T ss_pred EEEEEECCCC-EEEEcHHHeecc
Confidence 5666666554 333555555443
No 21
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=93.04 E-value=0.079 Score=45.28 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=35.7
Q ss_pred CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEE--EcC-CCcee-Eeecchhhcc
Q psy13744 244 PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVK--LTE-EDDVK-MIDVKFLCKY 293 (296)
Q Consensus 244 P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVk--ld~-~~d~k-il~~~~L~Kl 293 (296)
-++||+|+|+.|.+.|..|++..||.+...++ ++- +.... -|++++|-|+
T Consensus 128 ~~~Gd~V~V~~GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~vel~~~qvek~ 181 (181)
T 2jvv_A 128 FEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEKA 181 (181)
T ss_dssp CCTTEEEEECSSTTTTEEEEEEEEETTTTEEEEEEEETTEEEEEEECTTTEEEC
T ss_pred CCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEEEECHHHEEEC
Confidence 35799999999999999999999998875444 321 22222 2777666553
No 22
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=92.67 E-value=0.014 Score=51.88 Aligned_cols=30 Identities=30% Similarity=0.403 Sum_probs=26.5
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEE
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVV 274 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiV 274 (296)
++||+|+||.|+|+|.+|+++.|+..+..|
T Consensus 70 kKGD~V~VIaGkDKGK~GkVl~V~~k~~rV 99 (191)
T 3bbo_W 70 KVGDTVKVISGGEKGKIGEISKIHKHNSTV 99 (191)
T ss_dssp CCSSCEEECSSSSTTCCCSCCCCCSSSCCC
T ss_pred ecCCEEEEeecCCCCceEEEEEEECCCCEE
Confidence 579999999999999999999998765544
No 23
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=91.87 E-value=0.49 Score=35.61 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=44.5
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecCCeEEEEeCCCCeeeeeeCCceeE
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEERTLSIEAHELEP 241 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEt 241 (296)
-.|..+=.|||+. ++|.|..|.|..|.+..|.|.-+-..+.++|-.++|+-
T Consensus 16 K~F~~GDHVkVi~----G~~~getGlVV~v~~d~v~v~SD~t~~Ei~V~~~dL~~ 66 (69)
T 2do3_A 16 KYFKMGDHVKVIA----GRFEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQL 66 (69)
T ss_dssp SSCCTTCEEEESS----STTTTCEEEEEEECSSCEEEEESSSCSEEEECTTSEEE
T ss_pred eeccCCCeEEEec----cEEcCceEEEEEEeCCEEEEEeCCCCCEEEEEhHHhhh
Confidence 4678888999984 57889999999999999988888888899999999874
No 24
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=89.98 E-value=0.54 Score=38.96 Aligned_cols=91 Identities=9% Similarity=0.041 Sum_probs=53.4
Q ss_pred CCCCccccCCeEEEEEec-CCeEEEEeCCCCeeee------eeCCceeEcCCCCCCeEEEEeCCCCCceEEEEEE-eCCC
Q psy13744 200 NARDPEFRGQIGVIRHLG-SGVCSVYLAEEERTLS------IEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSV-DNGE 271 (296)
Q Consensus 200 ~~~d~~yygqkGVVrsV~-~g~c~V~L~d~~~vv~------V~q~~LEtViP~kGd~VkVI~Ge~RG~tG~LisI-D~~d 271 (296)
++.+++||. |.|+++. .-+|.|.+.|..---. +.-+.++-=.|..|..|+|..=+-.=.-|+.++. ...-
T Consensus 16 k~~ngryy~--~~V~~~~~~~~y~V~F~DgS~s~dl~PedIvs~dc~~~GpP~~G~~V~V~W~DG~~y~a~f~g~~~~~~ 93 (123)
T 2xdp_A 16 KHRNTRYYS--CRVMAVTSQTFYEVMFDDGSFSRDTFPEDIVSRDCLKLGPPAEGEVVQVKWPDGKLYGAKYFGSNIAHM 93 (123)
T ss_dssp CCCCCCCCC--CEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSCHHHHCCCCTTCEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred ECCCCcEEe--EEEEEEeeEEEEEEEcCCCCccCCCCHhHcccccccccCCCCCCCEEEEEcCCCCEEeEEEeeeeeEEE
Confidence 344566665 4666664 3556777766422211 3334444468999999999983222345777776 4456
Q ss_pred cEEEEcCCCceeEeecchhhcc
Q psy13744 272 GVVKLTEEDDVKMIDVKFLCKY 293 (296)
Q Consensus 272 giVkld~~~d~kil~~~~L~Kl 293 (296)
..|.++++. ...+.=++|+.+
T Consensus 94 YtV~FeDgs-~~~~kR~~iyt~ 114 (123)
T 2xdp_A 94 YQVEFEDGS-QIAMKREDIYTL 114 (123)
T ss_dssp EEEECTTSC-EEEEEGGGCCCS
T ss_pred EEEEECCCC-eEEecHHHcccc
Confidence 667776554 444666666554
No 25
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.97 E-value=1.5 Score=31.39 Aligned_cols=49 Identities=18% Similarity=0.195 Sum_probs=38.6
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEecCCeEEEEeC--CCCeeeeeeCCceeE
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLA--EEERTLSIEAHELEP 241 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~~g~c~V~L~--d~~~vv~V~q~~LEt 241 (296)
+.++=.|+|++ +.|.+-+|+|.+|.+..+.|.+. .-...+.++.++||-
T Consensus 8 f~~GD~V~V~~----Gpf~g~~G~V~evd~e~v~V~v~~fg~~tpvel~~~qv~K 58 (59)
T 2e6z_A 8 FQPGDNVEVCE----GELINLQGKILSVDGNKITIMPKHEDLKDMLEFPAQELRK 58 (59)
T ss_dssp CCTTSEEEECS----STTTTCEEEECCCBTTEEEEEECCSSCCSCEEEETTTEEE
T ss_pred CCCCCEEEEee----cCCCCCEEEEEEEeCCEEEEEEEecCCCceEEEcHHHEEE
Confidence 56777899984 67889999999998778877774 334588899998873
No 26
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=85.84 E-value=0.92 Score=43.32 Aligned_cols=50 Identities=24% Similarity=0.314 Sum_probs=36.3
Q ss_pred CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEE--cC-CCc-eeEeecchhhcc
Q psy13744 244 PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL--TE-EDD-VKMIDVKFLCKY 293 (296)
Q Consensus 244 P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl--d~-~~d-~kil~~~~L~Kl 293 (296)
-..||+|+|+.|.+.|..|++..+|.+...|++ +- +.. ..-|++++|-|+
T Consensus 299 f~~Gd~VrV~~GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVeL~~~qVek~ 352 (352)
T 2xhc_A 299 FKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEKI 352 (352)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEEEETTEEEEEEEEGGGEECC
T ss_pred CCCCCEEEEeccCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEEEchHHEEEC
Confidence 457999999999999999999999988765543 21 222 223777776553
No 27
>3iz6_D 40S ribosomal protein S4 (S4E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=84.44 E-value=2.2 Score=39.53 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=36.4
Q ss_pred CeeeeeeCC--c-eeEcCCCCCCeEEEEeCCCCCceEEEEEEeCC---CcEEEEcC
Q psy13744 229 ERTLSIEAH--E-LEPVMPQPNDKVKVIVGEHKECTGVLLSVDNG---EGVVKLTE 278 (296)
Q Consensus 229 ~~vv~V~q~--~-LEtViP~kGd~VkVI~Ge~RG~tG~LisID~~---dgiVkld~ 278 (296)
+++|.|+-+ . ++.+.=..|..|+|+.|.+.|.+|++.+|+.. ..+|.+.+
T Consensus 157 ~DTv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd 212 (265)
T 3iz6_D 157 NDTIKIDLETNKIVDFIKFDVGNVVMVTGGRNTGRVGVIKNREKHKGSFETIHVED 212 (265)
T ss_dssp TCEEEECSSSCCEEEEECCSTTCEEEECSSSSCSCEEEEEEEECCSSSCCEEEECC
T ss_pred CCEEEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEE
Confidence 344444433 3 45555567999999999999999999999754 33888853
No 28
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=84.44 E-value=5.9 Score=34.51 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=37.3
Q ss_pred CeEEEEEec--CCeEEEEeCCC-CeeeeeeC----CceeEcCCCCCCeEEEEe-CCCCCceEEEEEE
Q psy13744 209 QIGVIRHLG--SGVCSVYLAEE-ERTLSIEA----HELEPVMPQPNDKVKVIV-GEHKECTGVLLSV 267 (296)
Q Consensus 209 qkGVVrsV~--~g~c~V~L~d~-~~vv~V~q----~~LEtViP~kGd~VkVI~-Ge~RG~tG~LisI 267 (296)
+.|+|.+|. .++|+|++.+. ..-+.+-+ ..=...+|.+||.|+|+. +.++ ..|.++.-
T Consensus 19 r~G~V~~vd~~~~rvrV~~~~~~t~wl~~~~~~ag~~~~~~~P~vGeqV~v~f~~Gd~-~~gvVlg~ 84 (211)
T 3qr8_A 19 RTGIIVETDLNAGRCRVQTGGMCTDWLQWLTHRAGRSRTWWAPSVGEQVLILAVGGEL-DTAFVLPG 84 (211)
T ss_dssp EEEEEEEEETTTTEEEEEETTEECCCEEECCSCBSSSBCCCCCCTTCEEEEEECCTTT-CCEEEEEE
T ss_pred EEEEEEEEECCCCEEEEEeCCccceeEEeEcccccCCceEeCCCCCCEEEEEeCCCcc-CccEEEee
Confidence 579999997 47899998652 22233322 223467899999999987 2233 34555553
No 29
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=84.17 E-value=3.4 Score=31.12 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=40.5
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEecCCe----EEEEeCCC--Ceeee--eeCCceeEcCCCCC
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLGSGV----CSVYLAEE--ERTLS--IEAHELEPVMPQPN 247 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~~g~----c~V~L~d~--~~vv~--V~q~~LEtViP~kG 247 (296)
+.++-.|||++.. .=+|+..|.|.+|+++. +.|.+..- +.+.+ .--++||-|-+.++
T Consensus 2 i~rGs~VrIlr~e--Sywy~~vG~V~~Vd~~~~~ypV~VrFekvNy~g~~TnnFal~ELe~v~~~~~ 66 (70)
T 1qp2_A 2 VQRGSKVRILRPE--SYWFQDVGTVASVDQSGIKYPVIVRFEKVNYSGINTNNFAEDELVEVEAPKA 66 (70)
T ss_dssp CCTTCEEEECCTT--STTTTCEEEEEEECCSSCSCSEEEECSSCCSSCCSEEEECGGGEEECCCCCS
T ss_pred cCCCCEEEEcCcc--ceeecceeEEEEEeCCCcEeeEEEEecccccccccccccChhHeeEeccCcc
Confidence 3467789998643 35899999999998754 66666542 33444 77889999975544
No 30
>1m1h_A Transcription antitermination protein NUSG; transcription termination, RNP motif, immunoglobulin fold, nucleic acid interaction; 1.95A {Aquifex aeolicus} SCOP: b.114.1.1 d.58.42.1 PDB: 1m1g_A 1npp_A 1npr_A
Probab=82.00 E-value=0.27 Score=44.82 Aligned_cols=52 Identities=21% Similarity=0.185 Sum_probs=0.0
Q ss_pred EcCCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEcC---C-CceeEeecchhhc
Q psy13744 241 PVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTE---E-DDVKMIDVKFLCK 292 (296)
Q Consensus 241 tViP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld~---~-~d~kil~~~~L~K 292 (296)
.+...+||+|+|+.|.+.|.+|++..||.+..-+++.- + ..-..|+++.+-|
T Consensus 192 ~~~~~~Gd~V~I~~Gpf~g~~G~v~ev~~~k~~~~V~v~ifgr~tpv~l~~~~vek 247 (248)
T 1m1h_A 192 KVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRMTPVELDFDQVEK 247 (248)
T ss_dssp --------------------------------------------------------
T ss_pred cccCCCCCEEEEeccCCCCcEEEEEEEeCCCCEEEEEEEeCCCcEEEEEcHHHEEe
Confidence 34556899999999999999999999998755443211 1 1122366666655
No 31
>3kbg_A 30S ribosomal protein S4E; RPS4E, RS4E_theac, TAR28, NESG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.75A {Thermoplasma acidophilum}
Probab=80.88 E-value=5.6 Score=35.72 Aligned_cols=71 Identities=17% Similarity=0.227 Sum_probs=46.8
Q ss_pred ccCCeEEEEEec-CCeEEEEeCC----CCeeeeeeCC--c-eeEcCCCCCCeEEEEeCCCCCceEEEEEEeCC----CcE
Q psy13744 206 FRGQIGVIRHLG-SGVCSVYLAE----EERTLSIEAH--E-LEPVMPQPNDKVKVIVGEHKECTGVLLSVDNG----EGV 273 (296)
Q Consensus 206 yygqkGVVrsV~-~g~c~V~L~d----~~~vv~V~q~--~-LEtViP~kGd~VkVI~Ge~RG~tG~LisID~~----dgi 273 (296)
+.+++|++.=+. |+..-.+ +| .++++.++-+ . ++.+.=..|..++|+.|.+.|.+|++.+|+.. ..+
T Consensus 94 ~~~~~G~~~l~~HDGrti~~-pd~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~~i 172 (213)
T 3kbg_A 94 VIAPGNRIQLGTHDGRTFIT-DDKSIKVGDVLAVSVPDMKISEIIKMQPGNKAYITAGSHVNQTGTISKIEAKEGSSANL 172 (213)
T ss_dssp EEEGGGEEEEEETTSCEEEE-CCTTCCTTCEEEEETTTCCEEEEECCSTTCEEEECSSTTTTCEEEEEEECCCSCC--CE
T ss_pred EEecCCeeEEEecCccEEEc-CCCCcccCCEEEEECCCCceeeEEEcCCCCEEEEECCCcceEEEEEEEEEEccCCCCCE
Confidence 345566666654 5544333 22 3455555543 3 45555577999999999999999999999753 246
Q ss_pred EEEc
Q psy13744 274 VKLT 277 (296)
Q Consensus 274 Vkld 277 (296)
|.++
T Consensus 173 V~v~ 176 (213)
T 3kbg_A 173 VHFQ 176 (213)
T ss_dssp EEET
T ss_pred EEEE
Confidence 7775
No 32
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=80.31 E-value=5.1 Score=27.93 Aligned_cols=49 Identities=14% Similarity=0.269 Sum_probs=36.3
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEecC--CeEEEE--eCCCCeeeeeeCCceeE
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLGS--GVCSVY--LAEEERTLSIEAHELEP 241 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~~--g~c~V~--L~d~~~vv~V~q~~LEt 241 (296)
+..|=.|+|++ +.|.+..|+|.+|.. +.+.|. +......+.++.++||.
T Consensus 5 ~~~Gd~V~V~~----Gpf~g~~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~vek 57 (58)
T 1nz9_A 5 FREGDQVRVVS----GPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 57 (58)
T ss_dssp CCTTCEEEECS----GGGTTCEEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEEE
T ss_pred cCCCCEEEEee----cCCCCcEEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEEE
Confidence 45666889984 678899999999963 567554 45556678888888874
No 33
>3u5c_E RP5, S7, YS6, 40S ribosomal protein S4-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_D 3u5g_E
Probab=79.35 E-value=2.4 Score=39.19 Aligned_cols=50 Identities=14% Similarity=0.190 Sum_probs=36.7
Q ss_pred CeeeeeeCC--c-eeEcCCCCCCeEEEEeCCCCCceEEEEEEeCC---CcEEEEcC
Q psy13744 229 ERTLSIEAH--E-LEPVMPQPNDKVKVIVGEHKECTGVLLSVDNG---EGVVKLTE 278 (296)
Q Consensus 229 ~~vv~V~q~--~-LEtViP~kGd~VkVI~Ge~RG~tG~LisID~~---dgiVkld~ 278 (296)
+++|.|+-+ . ++.+.=..|..|+|+.|.+.|.+|++.+|+.. ..+|.+.+
T Consensus 157 ~Dtv~idl~~~kI~d~ikfe~Gnl~mvtgG~n~GriG~I~~ie~~~gs~~iV~vkd 212 (261)
T 3u5c_E 157 NDTVKIDLASGKITDFIKFDAGKLVYVTGGRNLGRIGTIVHKERHDGGFDLVHIKD 212 (261)
T ss_dssp TCEEEECSSSSCEEEEECCCSSCCEEECSSTTTTCBCCCCEEECCTTSCCEEEEEC
T ss_pred CCEEEEECCCCceeeEEEccCCCEEEEEcCCcceEEEEEEEEEEecCCCcEEEEEE
Confidence 455555543 3 45555577999999999999999999999754 33888753
No 34
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=77.29 E-value=5.4 Score=30.00 Aligned_cols=47 Identities=19% Similarity=0.175 Sum_probs=33.5
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecCCeEEEEeCCCCeeeeeeCCcee
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEERTLSIEAHELE 240 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~g~c~V~L~d~~~vv~V~q~~LE 240 (296)
.|+.+|+.+|.. |+.||- |.|++.....|-|.+.|..+ .-+..+.|.
T Consensus 16 ~~~geDVL~rw~----DG~fYL--GtIVd~~~~~ClV~FeD~S~-~Wv~~kdi~ 62 (69)
T 2xk0_A 16 YALQEDVFIKCN----DGRFYL--GTIIDQTSDQYLIRFDDQSE-QWCEPDKLR 62 (69)
T ss_dssp CCTTCEEEEECT----TSCEEE--EEEEEECSSCEEEEETTCCE-EEECTTTEE
T ss_pred cccCCeEEEEec----CCCEEE--EEEEecCCceEEEEecCCcc-eeeeHHHHH
Confidence 578889888754 577885 78877778999999877543 345555554
No 35
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.91 E-value=7.2 Score=29.23 Aligned_cols=52 Identities=6% Similarity=0.070 Sum_probs=41.0
Q ss_pred cCCCCCCeEEEEeCCCCCceEEEEEEeC-CCcEEEEcCCCceeEeecchhhccC
Q psy13744 242 VMPQPNDKVKVIVGEHKECTGVLLSVDN-GEGVVKLTEEDDVKMIDVKFLCKYK 294 (296)
Q Consensus 242 ViP~kGd~VkVI~Ge~RG~tG~LisID~-~dgiVkld~~~d~kil~~~~L~Kl~ 294 (296)
..+++||+|+-..=+..=..|++.+|+. ....|+.++. ..+.|+..+|..|.
T Consensus 8 ~~~kvGd~clA~wsDg~~Y~A~I~~v~~~~~~~V~f~Dy-n~e~v~~~~lrplp 60 (74)
T 2equ_A 8 FDFKAGEEVLARWTDCRYYPAKIEAINKEGTFTVQFYDG-VIRCLKRMHIKAMP 60 (74)
T ss_dssp CCCCTTCEEEEECSSSSEEEEEEEEESTTSSEEEEETTS-CEEEECGGGEECCC
T ss_pred CCCCCCCEEEEECCCCCEEEEEEEEECCCCEEEEEEecC-CeEEecHHHCeeCC
Confidence 4688999999997533448999999977 4678888766 78888888887663
No 36
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=74.78 E-value=4.1 Score=29.23 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=37.3
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecC--CeEEEEeCCCCeeeeeeCCceeEc
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGS--GVCSVYLAEEERTLSIEAHELEPV 242 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~--g~c~V~L~d~~~vv~V~q~~LEtV 242 (296)
.|-.-++++ .+ -.+|+++|- ++|.+|.+ +.|.|.+.+-+....|+.++|.++
T Consensus 8 ~~~vGd~c~-A~-~s~Dg~wYr--A~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl 61 (64)
T 4a4f_A 8 SWKVGDKCM-AV-WSEDGQCYE--AEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 61 (64)
T ss_dssp CCCTTCEEE-EE-CTTTSSEEE--EEEEEEETTTTEEEEEETTTTEEEEEEGGGEECC
T ss_pred CCCCCCEEE-EE-ECCCCCEEE--EEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeC
Confidence 464444433 33 235667764 89999973 899999999888888999998764
No 37
>2xzm_W 40S ribosomal protein S4; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_W
Probab=74.61 E-value=9 Score=35.35 Aligned_cols=50 Identities=10% Similarity=0.228 Sum_probs=35.2
Q ss_pred CeeeeeeCC--ceeEcCC-CCCCeEEEEeCCCCCceEEEEEEeCC---CcEEEEcC
Q psy13744 229 ERTLSIEAH--ELEPVMP-QPNDKVKVIVGEHKECTGVLLSVDNG---EGVVKLTE 278 (296)
Q Consensus 229 ~~vv~V~q~--~LEtViP-~kGd~VkVI~Ge~RG~tG~LisID~~---dgiVkld~ 278 (296)
+++|.|+-+ .+.-.++ ..|..|+|+.|.+.|.+|++.+++.. ..+|.+.+
T Consensus 159 ~Dtv~idl~~~kI~d~ikfe~G~l~mvtgG~n~GriG~I~~~e~~~gs~~iV~vkd 214 (260)
T 2xzm_W 159 GDTLKYDLVNNKIENFAHLESGNVCYIQQGNNIGRVGIIQHIEKHQGSFDICHVKD 214 (260)
T ss_dssp TBEEEEETTTTEEECCCBCCSSCEEEECSSTTTTCEEEEEEEECCCSSCCEEEEEC
T ss_pred CCeEEEeCCCCceeeEEEecCCCEEEEECCccceeEEEEEEEEecCCCCcEEEEEe
Confidence 455544433 3333344 67999999999999999999998543 45888743
No 38
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=74.45 E-value=8.2 Score=31.76 Aligned_cols=51 Identities=12% Similarity=0.148 Sum_probs=40.0
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEecC--CeEEEEeCCC--CeeeeeeCCceeEcC
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLGS--GVCSVYLAEE--ERTLSIEAHELEPVM 243 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~~--g~c~V~L~d~--~~vv~V~q~~LEtVi 243 (296)
+..|=.|+|++ +.|.|..|+|.+|.. +.+.|.+..- ...++|+.++||.+-
T Consensus 92 ~~~Gd~VrI~~----Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i~ 146 (152)
T 3p8b_B 92 LEPGDLVEVIA----GPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLIS 146 (152)
T ss_dssp CCTTCEEEECS----STTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEEE
T ss_pred CCCCCEEEEee----ecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEec
Confidence 45666789984 678999999999973 6777877554 357899999999874
No 39
>1jb0_E Photosystem 1 reaction centre subunit IV; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: b.34.4.2 PDB: 3pcq_E*
Probab=73.96 E-value=4.3 Score=30.85 Aligned_cols=34 Identities=32% Similarity=0.481 Sum_probs=28.3
Q ss_pred CCCCeEEEEeCC--CCCceEEEEEEeCCCc-----EEEEcC
Q psy13744 245 QPNDKVKVIVGE--HKECTGVLLSVDNGEG-----VVKLTE 278 (296)
Q Consensus 245 ~kGd~VkVI~Ge--~RG~tG~LisID~~dg-----iVkld~ 278 (296)
++|++|+|+.=| +--.+|++.+||.+.+ +||+|.
T Consensus 2 ~RGskVrIlR~ESYWyn~vGtVasVD~s~gi~YPV~VRFdk 42 (75)
T 1jb0_E 2 QRGSKVKILRPESYWYNEVGTVASVDQTPGVKYPVIVRFDK 42 (75)
T ss_dssp CTTCEEEECCTTCTTBTCEEEEEEECCCTTCSCCEEEECSS
T ss_pred CCCCEEEEccccceeecCcceEEEEecCCCccccEEEEEee
Confidence 579999999976 5788999999999754 788764
No 40
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=71.96 E-value=9.5 Score=28.29 Aligned_cols=49 Identities=14% Similarity=0.158 Sum_probs=40.1
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCC-CcEEEEcCCCceeEeecchhhccC
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNG-EGVVKLTEEDDVKMIDVKFLCKYK 294 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~-dgiVkld~~~d~kil~~~~L~Kl~ 294 (296)
+.||+|+.-.++.+=.-|++.+|+++ ...|+.++ ...+.|...+|-++.
T Consensus 8 ~vGd~vmArW~D~~yYpA~I~si~~~~~Y~V~F~d-G~~etvk~~~ikp~~ 57 (67)
T 3p8d_A 8 QINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAFS 57 (67)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECTTSEEEEEETT-SCEEEEEGGGEEECC
T ss_pred ccCCEEEEEcCCCCEeeEEEEEECCCCeEEEEEeC-CceEEEeHHHcccCC
Confidence 47999999998888899999999775 68888876 447778888877664
No 41
>3j20_E 30S ribosomal protein S4E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=71.47 E-value=5.1 Score=36.59 Aligned_cols=72 Identities=17% Similarity=0.097 Sum_probs=46.9
Q ss_pred ccCCeEEEEEec-CCeEEEEe-C-C----CCeeeeeeCCc---eeEcCCCCCCeEEEEeCCCCCceEEEEEEeCC----C
Q psy13744 206 FRGQIGVIRHLG-SGVCSVYL-A-E----EERTLSIEAHE---LEPVMPQPNDKVKVIVGEHKECTGVLLSVDNG----E 271 (296)
Q Consensus 206 yygqkGVVrsV~-~g~c~V~L-~-d----~~~vv~V~q~~---LEtViP~kGd~VkVI~Ge~RG~tG~LisID~~----d 271 (296)
+.+++|++.=+. |+..-.+- . + .+++|.|+-+. ++.+.=..|..++|+.|.+.|.+|++.+|+.. .
T Consensus 131 ~~~~~G~~~l~~hDgr~i~~p~~~d~~ik~~Dtv~idl~~~kI~d~ikf~~G~l~mvtgG~n~GriG~I~~ie~~~gs~~ 210 (243)
T 3j20_E 131 RMIKGARVQLNFHDGTNHIVSIAEKDNYFTSYTVLMKVPEREILEVLPFEKGAYVFVTQGKNVARKGRIVEIKRFPMGWP 210 (243)
T ss_dssp EEETTTEEEECCSSCCCEECSSSSCSSCSSCEEEEEETTTTEEEEEEECCTTCEEEECSSSSTTCEEEEEECCCCCSSSC
T ss_pred EEccCCeeEEEecCCceEEcccccCCCcccCCEEEEECCCCCeeeEEeccCCCEEEEECCccceEEEEEEEEEEecCCCc
Confidence 344556665553 44433321 1 1 35566665543 45555578999999999999999999999643 4
Q ss_pred cEEEEc
Q psy13744 272 GVVKLT 277 (296)
Q Consensus 272 giVkld 277 (296)
.+|.+.
T Consensus 211 ~~V~v~ 216 (243)
T 3j20_E 211 DVVTIE 216 (243)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 577774
No 42
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=69.70 E-value=11 Score=33.63 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=37.2
Q ss_pred EecCCCCccccCCeEEEEEecCCeEEEEeCCCCeeeeeeCCceeEc
Q psy13744 197 INENARDPEFRGQIGVIRHLGSGVCSVYLAEEERTLSIEAHELEPV 242 (296)
Q Consensus 197 I~~~~~d~~yygqkGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEtV 242 (296)
|-.+....-+.+..|||+.|.+.++.|.+..-+++.+|+.++||++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (200)
T 3gox_A 19 IAKNQLGNIVPNSVGVIRAVNGKSAMVLFIGLNELKRVDFSELEAI 64 (200)
T ss_dssp EESSCBTTBCTTBEEEEEEEETTEEEEEETTTTEEEEEEGGGEEEC
T ss_pred EeccccccccccceeeEEecCCceEEEEEEehhHhhhcchhhccee
Confidence 4333444456788999999999888888877788999999999998
No 43
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=69.22 E-value=5.1 Score=30.99 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=39.3
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecC--CeEEEEeCCCCeeeeeeCCceeEcCCC
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGS--GVCSVYLAEEERTLSIEAHELEPVMPQ 245 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~--g~c~V~L~d~~~vv~V~q~~LEtViP~ 245 (296)
.|-.-++++ .+ -.+|+.+|- ++|.+|.. +.|.|.+.+-+....|..++|.++.++
T Consensus 10 ~~kvGd~C~-A~-ys~Dg~wYr--A~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~ 66 (88)
T 1g5v_A 10 QWKVGDKCS-AI-WSEDGCIYP--ATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 66 (88)
T ss_dssp CCCSSCEEE-EE-CTTTCCEEE--EEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC--
T ss_pred CCCCCCEEE-EE-ECCCCCEEE--EEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCChh
Confidence 575544443 33 234677774 89999974 899999998888888999999887554
No 44
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=67.56 E-value=26 Score=26.88 Aligned_cols=48 Identities=21% Similarity=0.413 Sum_probs=33.8
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEec--CCeEEEEeCCCCeeeeeeCCceeE
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLG--SGVCSVYLAEEERTLSIEAHELEP 241 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~--~g~c~V~L~d~~~vv~V~q~~LEt 241 (296)
.|+-+|+.+|- .|++||- |.|++|. ...|-|.+.|..+. =+...+|++
T Consensus 27 f~eGeDVLarw----sDGlfYL--GTI~kV~~~~e~ClV~F~D~S~~-W~~~kdi~~ 76 (79)
T 2m0o_A 27 LWEGQDVLARW----TDGLLYL--GTIKKVDSAREVCLVQFEDDSQF-LVLWKDISP 76 (79)
T ss_dssp CCTTCEEEBCC----TTSCCCE--EEEEEEETTTTEEEEEETTSCEE-EEETTTBCC
T ss_pred eccCCEEEEEe----cCCCEEe--EEEEEeccCCCEEEEEEcCCCeE-EEEeecccc
Confidence 57777777643 4678886 8999996 58899999876543 355555554
No 45
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=69.32 E-value=1.3 Score=36.55 Aligned_cols=96 Identities=15% Similarity=0.198 Sum_probs=67.3
Q ss_pred CcccCceEEEEecCCCCccccC--CeEEEEEecC-CeEEEEeCCCCeeeeeeCCceeEcCCCCCCeEEEEeCCCCCceEE
Q psy13744 187 EWHTTDIEVRINENARDPEFRG--QIGVIRHLGS-GVCSVYLAEEERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGV 263 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yyg--qkGVVrsV~~-g~c~V~L~d~~~vv~V~q~~LEtViP~kGd~VkVI~Ge~RG~tG~ 263 (296)
..|..|-+|--+ |.| ..+.|+.|.. -.|+|.|..+.....|+.+++. =..+.|..|-+..++..-+.|+
T Consensus 5 p~L~VGTeVSAK-------yrGAFCEAkIk~V~r~vKcKV~~k~~~~~~~v~d~~ik-G~l~vG~~ve~~~~~~~~~~~~ 76 (118)
T 2lcd_A 5 AYLTVGTDVSAK-------YRGAFCEAKIKTVKRLVKVKVLLKQDNTTQLVQDDQVK-GPLRVGAIVETRTSDGSFQEAI 76 (118)
Confidence 577888887433 322 4677888863 6799999876666656666552 2446799999988876677889
Q ss_pred EEEE-eCCCcEEEEcCCCceeEeecchhh
Q psy13744 264 LLSV-DNGEGVVKLTEEDDVKMIDVKFLC 291 (296)
Q Consensus 264 LisI-D~~dgiVkld~~~d~kil~~~~L~ 291 (296)
+..| |.+-..|-+|++ |.|-|-=..||
T Consensus 77 I~~i~D~S~YtVVFdDG-D~ktLrRt~lc 104 (118)
T 2lcd_A 77 ISKLTDASWYTVVFDDG-DERTLRRTSLC 104 (118)
Confidence 9999 888888878765 35556555555
No 46
>1qp2_A Protein (PSAE protein); mainly beta, roll, pleckstrin topology, SH3-like, electron T; NMR {Nostoc SP} SCOP: b.34.4.2 PDB: 1qp3_A
Probab=65.48 E-value=8.5 Score=28.98 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=29.3
Q ss_pred CCCCeEEEEeCC--CCCceEEEEEEeCCC----cEEEEcC
Q psy13744 245 QPNDKVKVIVGE--HKECTGVLLSVDNGE----GVVKLTE 278 (296)
Q Consensus 245 ~kGd~VkVI~Ge--~RG~tG~LisID~~d----giVkld~ 278 (296)
++|++|+|++=| |-..+|++.+||... .+|++|.
T Consensus 3 ~rGs~VrIlr~eSywy~~vG~V~~Vd~~~~~ypV~VrFek 42 (70)
T 1qp2_A 3 QRGSKVRILRPESYWFQDVGTVASVDQSGIKYPVIVRFEK 42 (70)
T ss_dssp CTTCEEEECCTTSTTTTCEEEEEEECCSSCSCSEEEECSS
T ss_pred CCCCEEEEcCccceeecceeEEEEEeCCCcEeeEEEEecc
Confidence 469999999966 589999999999986 6888876
No 47
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=65.37 E-value=12 Score=27.88 Aligned_cols=55 Identities=16% Similarity=0.166 Sum_probs=41.4
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecC--CeEEEEeCCCCeeeeeeCCceeEcCCC
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGS--GVCSVYLAEEERTLSIEAHELEPVMPQ 245 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~--g~c~V~L~d~~~vv~V~q~~LEtViP~ 245 (296)
.|..-++++ .+ -.+|+++| .++|.+|.+ +.|.|++.|-+.+..|..++|.++.++
T Consensus 9 ~~~~G~~c~-A~-~s~Dg~wY--RA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ 65 (78)
T 2d9t_A 9 VWKPGDECF-AL-YWEDNKFY--RAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 65 (78)
T ss_dssp CCCTTCEEE-EE-CTTTCCEE--EEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred CCCcCCEEE-EE-ECCCCCEE--EEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHH
Confidence 476555554 33 22456666 489999974 889999999899999999999998775
No 48
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=65.21 E-value=1.3 Score=50.29 Aligned_cols=12 Identities=42% Similarity=0.404 Sum_probs=6.2
Q ss_pred CCcccCCCCCCC
Q psy13744 6 MSPRISSPMHPS 17 (296)
Q Consensus 6 ~spri~sp~~~~ 17 (296)
++|--.||+.+.
T Consensus 1483 ~tp~~~s~~~~~ 1494 (1752)
T 3h0g_A 1483 GTPYERSPMVDS 1494 (1752)
T ss_dssp TCSSCCCTTHHH
T ss_pred CCCCCCCCCCcc
Confidence 445335666554
No 49
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=64.98 E-value=10 Score=26.59 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=38.4
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEec--CCeEEEEeCCCCeeeeeeCCceeEcCC
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLG--SGVCSVYLAEEERTLSIEAHELEPVMP 244 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~--~g~c~V~L~d~~~vv~V~q~~LEtViP 244 (296)
.|-.-++++ -+ -.+|+++| .|+|.+|. ++.|.|.+.+-+....|..++|.++.+
T Consensus 3 ~~~~G~~c~-A~-~s~Dg~wY--rA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 3 QWKVGDKCS-AI-WSEDGCIY--PATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC 58 (59)
T ss_dssp CCCTTCEEE-EE-CTTTSCEE--EEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred cCCcCCEEE-EE-ECCCCCEE--EEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCC
Confidence 364444443 32 22456665 48999996 489999999888888999999987644
No 50
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=64.58 E-value=20 Score=26.94 Aligned_cols=50 Identities=8% Similarity=0.159 Sum_probs=38.1
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEcCCCceeEeecchhhccCC
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFLCKYKP 295 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld~~~d~kil~~~~L~Kl~~ 295 (296)
+.|+.|++=.=+-+=..|+++....+.+.|+++++. ...+.+++|-||..
T Consensus 17 ~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S-~~Wv~~kdi~kl~~ 66 (69)
T 2xk0_A 17 ALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQS-EQWCEPDKLRKLGG 66 (69)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCC-EEEECTTTEECSSC
T ss_pred ccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCc-ceeeeHHHHHhhcC
Confidence 358888876544455889998888889999987654 44688899988864
No 51
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.43 E-value=6.4 Score=29.50 Aligned_cols=54 Identities=7% Similarity=0.120 Sum_probs=39.1
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecC-CeEEEEeCCCCeeeeeeCCceeEcCCCC
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGS-GVCSVYLAEEERTLSIEAHELEPVMPQP 246 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~-g~c~V~L~d~~~vv~V~q~~LEtViP~k 246 (296)
.|-.-+.+ .-+ ..|++|| .|+|.+|.+ ++|.|.+.|. ...+|..++|.++.++.
T Consensus 9 ~~kvGd~c-lA~--wsDg~~Y--~A~I~~v~~~~~~~V~f~Dy-n~e~v~~~~lrplp~~~ 63 (74)
T 2equ_A 9 DFKAGEEV-LAR--WTDCRYY--PAKIEAINKEGTFTVQFYDG-VIRCLKRMHIKAMPEDA 63 (74)
T ss_dssp CCCTTCEE-EEE--CSSSSEE--EEEEEEESTTSSEEEEETTS-CEEEECGGGEECCCGGG
T ss_pred CCCCCCEE-EEE--CCCCCEE--EEEEEEECCCCEEEEEEecC-CeEEecHHHCeeCChhH
Confidence 46443433 333 2266766 489999975 8999999887 78889999999887654
No 52
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=63.54 E-value=9.6 Score=29.02 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=37.0
Q ss_pred CeEEEEEec-CCeEEEEeCCCC-eeeeeeCCcee-EcCCCCCCeEEEEeCCCCCceEEEE
Q psy13744 209 QIGVIRHLG-SGVCSVYLAEEE-RTLSIEAHELE-PVMPQPNDKVKVIVGEHKECTGVLL 265 (296)
Q Consensus 209 qkGVVrsV~-~g~c~V~L~d~~-~vv~V~q~~LE-tViP~kGd~VkVI~Ge~RG~tG~Li 265 (296)
..|+|.+.. ++++.|++.+.. ....+.-..-- -+.+..||+|+|--=+|--..|.++
T Consensus 16 ~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi 75 (79)
T 3i4o_A 16 VEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIV 75 (79)
T ss_dssp EEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEE
Confidence 478999987 899999998642 33333333222 4558889999986555544445443
No 53
>2jvv_A Transcription antitermination protein NUSG; transcription factor, transcription regulation, transcription termination; NMR {Escherichia coli} PDB: 2k06_A 2kvq_G
Probab=62.43 E-value=17 Score=30.63 Aligned_cols=50 Identities=18% Similarity=0.250 Sum_probs=38.6
Q ss_pred cccCceEEEEecCCCCccccCCeEEEEEecC--CeE--EEEeCCCCeeeeeeCCceeE
Q psy13744 188 WHTTDIEVRINENARDPEFRGQIGVIRHLGS--GVC--SVYLAEEERTLSIEAHELEP 241 (296)
Q Consensus 188 Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~--g~c--~V~L~d~~~vv~V~q~~LEt 241 (296)
-+..|=.|+|++ +-|.|..|+|.+|.. +.+ .|.|......+.++.++||-
T Consensus 127 ~~~~Gd~V~V~~----GPf~g~~G~v~~v~~~k~r~~V~v~ifgr~t~vel~~~qvek 180 (181)
T 2jvv_A 127 LFEPGEMVRVND----GPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 (181)
T ss_dssp CCCTTEEEEECS----STTTTEEEEEEEEETTTTEEEEEEEETTEEEEEEECTTTEEE
T ss_pred cCCCCCEEEEec----cCCCCcEEEEEEEeCCCCEEEEEEEECCCCEEEEECHHHEEE
Confidence 466788999984 678899999999973 567 45566566778888888874
No 54
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=62.15 E-value=15 Score=27.17 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=38.1
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecC-CeEEEEeCCCCeeeeeeCCceeEcCCCC
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGS-GVCSVYLAEEERTLSIEAHELEPVMPQP 246 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~-g~c~V~L~d~~~vv~V~q~~LEtViP~k 246 (296)
.|..-+ .|-.+ -.|.+|| .|.|.+|.+ +.++|.+.+ +.+.+|..++|.++.-.+
T Consensus 6 ~~~vGd-~vmAr--W~D~~yY--pA~I~si~~~~~Y~V~F~d-G~~etvk~~~ikp~~~~~ 60 (67)
T 3p8d_A 6 EFQINE-QVLAC--WSDCRFY--PAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAFSKDQ 60 (67)
T ss_dssp CCCTTC-EEEEE--CTTSCEE--EEEEEEECTTSEEEEEETT-SCEEEEEGGGEEECC---
T ss_pred ccccCC-EEEEE--cCCCCEe--eEEEEEECCCCeEEEEEeC-CceEEEeHHHcccCCccc
Confidence 574333 33333 2667777 589999975 789999988 889999999999876543
No 55
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=61.81 E-value=23 Score=26.33 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=35.5
Q ss_pred CCCCCeEEEEeC-CCCCceEEEEEEeCCC--cEEEEcCCCceeEeecchhhccCC
Q psy13744 244 PQPNDKVKVIVG-EHKECTGVLLSVDNGE--GVVKLTEEDDVKMIDVKFLCKYKP 295 (296)
Q Consensus 244 P~kGd~VkVI~G-e~RG~tG~LisID~~d--giVkld~~~d~kil~~~~L~Kl~~ 295 (296)
+++|+.++...- +.+=.+|++++|+.++ ..|+..+=.+...+++++|..|..
T Consensus 18 ~kvGd~C~A~ys~Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 18 WKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQT 72 (77)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC--
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECCh
Confidence 567999999973 3345889999998654 556653323366788888877643
No 56
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=61.46 E-value=31 Score=24.50 Aligned_cols=53 Identities=8% Similarity=0.052 Sum_probs=37.6
Q ss_pred cCCCCCCeEEEEe-CCCCCceEEEEEEeCC--CcEEEEcCCCceeEeecchhhccC
Q psy13744 242 VMPQPNDKVKVIV-GEHKECTGVLLSVDNG--EGVVKLTEEDDVKMIDVKFLCKYK 294 (296)
Q Consensus 242 ViP~kGd~VkVI~-Ge~RG~tG~LisID~~--dgiVkld~~~d~kil~~~~L~Kl~ 294 (296)
..|++||.++... .+.+=.+|++++|+.+ ...|+..+=.+...+++.+|..|.
T Consensus 7 ~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 7 HSWKVGDKCMAVWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVE 62 (64)
T ss_dssp SCCCTTCEEEEECTTTSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECCS
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeCC
Confidence 4588999999997 3344588999999875 455665432346678888886553
No 57
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=61.22 E-value=41 Score=24.37 Aligned_cols=56 Identities=13% Similarity=0.157 Sum_probs=34.0
Q ss_pred eEEEEEecCCeEEEEeCCCCeeeeeeCCceeE--c-CCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEE
Q psy13744 210 IGVIRHLGSGVCSVYLAEEERTLSIEAHELEP--V-MPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276 (296)
Q Consensus 210 kGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEt--V-iP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl 276 (296)
+|+|.+|.+.-|-|.|.+. ..--|..++|.- + .-+.||+|+| +++++|.+.+-+.|
T Consensus 10 ~G~V~~v~~~G~fV~l~~~-~~Gllh~sel~~~~~~~~~~Gd~V~v----------~V~~vd~~~~~i~l 68 (80)
T 2k52_A 10 KGVVTRIEKYGAFINLNEQ-VRGLLRPRDMISLRLENLNVGDEIIV----------QAIDVRPEKREIDF 68 (80)
T ss_dssp EEEEEEEETTEEEEEEETT-EEEEECGGGCSSCCGGGCCTTCEEEE----------EEEEEETTTTEEEE
T ss_pred EEEEEEEeCCEEEEEECCC-CEEEEEHHHCCcccceeeCCCCEEEE----------EEEEEECCCCEEEE
Confidence 5778888776666777542 333344444432 1 3556777765 56788887776654
No 58
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=60.97 E-value=27 Score=25.30 Aligned_cols=45 Identities=20% Similarity=0.116 Sum_probs=32.1
Q ss_pred eEEEEEecC-CeEEEEeCCCC-eeeeeeCCcee-EcCCCCCCeEEEEe
Q psy13744 210 IGVIRHLGS-GVCSVYLAEEE-RTLSIEAHELE-PVMPQPNDKVKVIV 254 (296)
Q Consensus 210 kGVVrsV~~-g~c~V~L~d~~-~vv~V~q~~LE-tViP~kGd~VkVI~ 254 (296)
+|+|.+..+ +.+.|++.+.. ....+....-. -+.+..||+|.|-.
T Consensus 9 ~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~ 56 (71)
T 1ah9_A 9 QGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVEL 56 (71)
T ss_dssp CEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEE
T ss_pred EEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEE
Confidence 688888876 99999987653 34556655543 37788999998854
No 59
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=60.95 E-value=24 Score=26.21 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=36.4
Q ss_pred CCCCCCeEEEEeC-CCCCceEEEEEEeC--CCcEEEEcCCCceeEeecchhhccC
Q psy13744 243 MPQPNDKVKVIVG-EHKECTGVLLSVDN--GEGVVKLTEEDDVKMIDVKFLCKYK 294 (296)
Q Consensus 243 iP~kGd~VkVI~G-e~RG~tG~LisID~--~dgiVkld~~~d~kil~~~~L~Kl~ 294 (296)
.|++|+.|+...= +.+=.+|++++|+. ....|+..+=.+...|++++|..|.
T Consensus 9 ~~~~G~~c~A~~s~Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~ 63 (78)
T 2d9t_A 9 VWKPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQ 63 (78)
T ss_dssp CCCTTCEEEEECTTTCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCC
Confidence 5889999999862 23448899999986 4467775432346678888887664
No 60
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=58.03 E-value=28 Score=27.95 Aligned_cols=59 Identities=19% Similarity=0.276 Sum_probs=41.4
Q ss_pred eEEEEEecC-CeEEEEeCCCC-eeeeeeCCceeEcCCCCCCeEEEEeCCCCCceEEEEEEe
Q psy13744 210 IGVIRHLGS-GVCSVYLAEEE-RTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVD 268 (296)
Q Consensus 210 kGVVrsV~~-g~c~V~L~d~~-~vv~V~q~~LEtViP~kGd~VkVI~Ge~RG~tG~LisID 268 (296)
.|+|.+..+ +.+.|.+.+.. ....+....-.-+.+..||+|+|-.=+|-...|.++.|-
T Consensus 35 ~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~V~ve~~~~~~~kG~I~~~~ 95 (117)
T 2oqk_A 35 YGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKY 95 (117)
T ss_dssp EEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCEEEEEECTTCTTEEEEEEEC
T ss_pred EEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCEEEEEEEcCCCCeEEEEEEe
Confidence 588888875 99999997743 234455444447778899999997655555677777763
No 61
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=57.05 E-value=63 Score=25.09 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=36.6
Q ss_pred CeEEEEEecCCeEEEEeCCCCeeeeeeCCceeE---c-----CCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEE
Q psy13744 209 QIGVIRHLGSGVCSVYLAEEERTLSIEAHELEP---V-----MPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276 (296)
Q Consensus 209 qkGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEt---V-----iP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl 276 (296)
-+|+|++|.+.-|-|.|.+ +..--|.-++|.- + .-+.||+|+| +++.||.+++-+.|
T Consensus 34 ~~G~V~~v~~~G~FV~l~~-~~~Glvhisel~~~~~~~~~~~~~~vGd~V~v----------kV~~vd~~~~rI~l 98 (115)
T 2khi_A 34 LTGRVTNLTDYGCFVEIEE-GVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEV----------MVLDIDEERRRISL 98 (115)
T ss_dssp EEEEEEEEETTEEEEECST-TCEEEEETTSSSCSSTTCSSTTTCCTTCEEEE----------EEEEEETTTTEEEE
T ss_pred EEEEEEEEECCEEEEEECC-CCEEEEEHHHCCccccccCcccEECCCCEEEE----------EEEEEECCCCEEEE
Confidence 3688999987667788864 3344466666532 1 2344666655 67888888776665
No 62
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=56.84 E-value=40 Score=23.38 Aligned_cols=53 Identities=19% Similarity=0.038 Sum_probs=37.4
Q ss_pred CCCCCeEEEEeC-CCCCceEEEEEEeC--CCcEEEEcCCCceeEeecchhhccCCC
Q psy13744 244 PQPNDKVKVIVG-EHKECTGVLLSVDN--GEGVVKLTEEDDVKMIDVKFLCKYKPE 296 (296)
Q Consensus 244 P~kGd~VkVI~G-e~RG~tG~LisID~--~dgiVkld~~~d~kil~~~~L~Kl~~~ 296 (296)
-++|+.++...- +.+=.+|++++|+. ....|+..+=.+...+++++|..|.+|
T Consensus 4 ~~~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~~ 59 (59)
T 1mhn_A 4 WKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59 (59)
T ss_dssp CCTTCEEEEECTTTSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred CCcCCEEEEEECCCCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence 467999988862 33448999999986 456676543234677999998877654
No 63
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=56.72 E-value=17 Score=29.71 Aligned_cols=46 Identities=11% Similarity=0.296 Sum_probs=32.9
Q ss_pred CceEEEEecCCCCccccCCeEEEEEecC--CeEEEEeCCC---Ceee-eeeCCcee
Q psy13744 191 TDIEVRINENARDPEFRGQIGVIRHLGS--GVCSVYLAEE---ERTL-SIEAHELE 240 (296)
Q Consensus 191 ~dI~VkI~~~~~d~~yygqkGVVrsV~~--g~c~V~L~d~---~~vv-~V~q~~LE 240 (296)
.+=.|+|+. ++|.|+.|++.++.. ..+.|+|.++ ++.+ .++-++|-
T Consensus 73 ~g~~V~Iv~----G~~rG~~g~L~~id~~~~~~~V~l~~~~~~~~~v~~l~~ddi~ 124 (127)
T 2ckk_A 73 PGKRILVLN----GGYRGNEGTLESINEKTFSATIVIETGPLKGRRVEGIQYEDIS 124 (127)
T ss_dssp TTCEEEECS----STTTTCEEEEEEEEGGGTEEEEEECSSTTTTCEEEEEEGGGEE
T ss_pred CCCEEEEEe----cccCCcEEEEEEEeCCCcEEEEEEccCCCCCCEEEeeCHHHhh
Confidence 344677763 578899999999973 5789999863 5445 57777653
No 64
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Methanothermobacterthermautotrophicus str}
Probab=56.01 E-value=57 Score=25.33 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=35.4
Q ss_pred ccccCCeEEEEEec--CCeEEEEeCCCCeeeeeeCCceeEcCCCCCCeEEEEeCCCCCceEEEEEEe
Q psy13744 204 PEFRGQIGVIRHLG--SGVCSVYLAEEERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVD 268 (296)
Q Consensus 204 ~~yygqkGVVrsV~--~g~c~V~L~d~~~vv~V~q~~LEtViP~kGd~VkVI~Ge~RG~tG~LisID 268 (296)
..|.|++|+|.+-. ++...|.+. ++.-++..+ ..| .+|++|+|+. -.|.+-.+..++
T Consensus 38 ~~lIG~~g~V~~~i~~~g~G~V~i~--Ge~W~A~s~---~~i-~~G~~V~Vv~--veG~~LiV~~~~ 96 (101)
T 2k5h_A 38 DRLIGRKGVVMEAISPQNSGLVKVD--GETWRATSG---TVL-DVGEEVSVKA--IEGVKLVVEKLE 96 (101)
T ss_dssp GGGTTSEEEEEECBCSSSCEEEEET--TEEEEEECS---SCB-CTTCEEEEEE--ECSSSEEEEECC
T ss_pred hhcCCCEEEEeEEccCCCeEEEEEC--CEEEEEEeC---CcC-CCCCEEEEEE--EECCEEEEEECC
Confidence 46789999888864 457788886 444454332 123 4599999986 334444444433
No 65
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=55.96 E-value=17 Score=24.85 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=30.1
Q ss_pred CCccccCCeEEEEEec--CCeEEEEeCCCCeeeeeeCCceeEc
Q psy13744 202 RDPEFRGQIGVIRHLG--SGVCSVYLAEEERTLSIEAHELEPV 242 (296)
Q Consensus 202 ~d~~yygqkGVVrsV~--~g~c~V~L~d~~~vv~V~q~~LEtV 242 (296)
+|+++| .|+|.+|. ++.|.|...|-+....|+.++|.++
T Consensus 14 ~Dg~wY--rA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 14 EDNKFY--RAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 54 (54)
T ss_dssp TTTEEE--EEEEEEC--CCSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCCEE--EEEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEEC
Confidence 455665 48999995 4789999998888888999988764
No 66
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=54.94 E-value=22 Score=27.57 Aligned_cols=53 Identities=11% Similarity=0.177 Sum_probs=38.2
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecC-CeEEEEeCCCCeeeeeeCCceeEcCCC
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGS-GVCSVYLAEEERTLSIEAHELEPVMPQ 245 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~-g~c~V~L~d~~~vv~V~q~~LEtViP~ 245 (296)
.|..-+ .|--+ -.|.+|| .|.|.+|.+ +.++|.+.| +.+.+|...+|.++.-+
T Consensus 21 ~f~vGd-~VlAr--W~D~~yY--PAkI~sV~~~~~YtV~F~D-G~~etvk~~~IKp~~~~ 74 (85)
T 3qii_A 21 EFQINE-QVLAC--WSDCRFY--PAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAFSKD 74 (85)
T ss_dssp CCCTTC-EEEEE--CTTSCEE--EEEEEEECTTSEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred ccccCC-EEEEE--eCCCCEe--eEEEEEECCCCeEEEEEeC-CCeEEecHHHcccCChh
Confidence 574433 33333 2567777 489999975 889999988 88999999999997554
No 67
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=54.14 E-value=41 Score=25.83 Aligned_cols=51 Identities=18% Similarity=0.044 Sum_probs=37.0
Q ss_pred CCCCCCeEEEEeC-CCCCceEEEEEEeC--CCcEEEEcCCCceeEeecchhhcc
Q psy13744 243 MPQPNDKVKVIVG-EHKECTGVLLSVDN--GEGVVKLTEEDDVKMIDVKFLCKY 293 (296)
Q Consensus 243 iP~kGd~VkVI~G-e~RG~tG~LisID~--~dgiVkld~~~d~kil~~~~L~Kl 293 (296)
.+++||.|+...= +.+=..|++.+|+. ....|+..+=.....|++.+|..+
T Consensus 10 ~~kvGd~C~A~ys~Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~ 63 (88)
T 1g5v_A 10 QWKVGDKCSAIWSEDGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 63 (88)
T ss_dssp CCCSSCEEEEECTTTCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccC
Confidence 5889999999983 33558999999987 456676543233667888887665
No 68
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=53.93 E-value=24 Score=25.64 Aligned_cols=47 Identities=21% Similarity=0.476 Sum_probs=31.8
Q ss_pred cccCceEEEEecCCCCccccCCeEEEEEec--CCeEEEEeCCCCeeeeeeCCceeE
Q psy13744 188 WHTTDIEVRINENARDPEFRGQIGVIRHLG--SGVCSVYLAEEERTLSIEAHELEP 241 (296)
Q Consensus 188 Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~--~g~c~V~L~d~~~vv~V~q~~LEt 241 (296)
|.-+|+.++.. |++||- |.|++|. ..+|.|.+.|..+ .-+.-++|++
T Consensus 5 ~~GedVLarws----DG~fYl--GtI~~V~~~~~~clV~F~D~s~-~W~~~kdi~~ 53 (58)
T 4hcz_A 5 WEGQDVLARWT----DGLLYL--GTIKKVDSAREVCLVQFEDDSQ-FLVLWKDISP 53 (58)
T ss_dssp CTTCEEEEECT----TSCEEE--EEEEEEETTTTEEEEEETTSCE-EEEEGGGEEE
T ss_pred ccCCEEEEEec----CCCEEe--EEEEEEecCCCEEEEEEcCCCe-EEEEhHHccc
Confidence 44556666544 578885 8999996 3699999987543 3455566654
No 69
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=53.73 E-value=32 Score=25.74 Aligned_cols=53 Identities=11% Similarity=-0.056 Sum_probs=36.1
Q ss_pred EcCCCCCCeEEEEe-CCCCCceEEEEEEeCC-CcEEEE-cCCCceeEeecchhhccC
Q psy13744 241 PVMPQPNDKVKVIV-GEHKECTGVLLSVDNG-EGVVKL-TEEDDVKMIDVKFLCKYK 294 (296)
Q Consensus 241 tViP~kGd~VkVI~-Ge~RG~tG~LisID~~-dgiVkl-d~~~d~kil~~~~L~Kl~ 294 (296)
...|++|+.+.+.. .+..=.+|++++|+.+ ...|.+ |=+ +...+++++|..|.
T Consensus 25 ~~~~~~G~~c~a~~~~d~~wyRA~I~~~~~~~~~~V~fvDyG-n~e~v~~~~lr~l~ 80 (94)
T 3fdr_A 25 DLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFG-DNGDCPLKDLRALR 80 (94)
T ss_dssp CCCCCTTCEEEEEETTTTEEEEEEEEEECTTSCEEEEETTTC-CEEEECGGGCEECC
T ss_pred CCCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEcCC-CeEEEEHHHhhhcC
Confidence 34688999998875 3334478999999754 566664 433 35567777776664
No 70
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.11 E-value=15 Score=28.58 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=38.4
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEec-CCeEEEEeCCCCeeeeeeCCceeEcCCC
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLG-SGVCSVYLAEEERTLSIEAHELEPVMPQ 245 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~-~g~c~V~L~d~~~vv~V~q~~LEtViP~ 245 (296)
.| ..|..|.++-. +|.+.| .|.|++|. ++.++|.+.|-+.+.+|+.++|.+.-|+
T Consensus 21 ~~-k~g~~vaak~~-d~n~Wy--RakV~~v~~~~~veVl~~DyGn~~~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 21 KW-ENDMHCAVKIQ-DKNQWR--RGQIIRMVTDTLVEVLLYDVGVELVVNVDCLRKLEEN 76 (85)
T ss_dssp CC-CSSCEEEEECS-SSCCEE--EEEEEEECSSSEEEEECTTTCCEEEEETTTEEECCHH
T ss_pred Cc-cCCCEEEEEeC-CCCeEE--EEEEEEecCCCeEEEEEEccCCEEEEEccccccCCHH
Confidence 47 34555445422 222333 57788886 5889999999999999999999887553
No 71
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=51.16 E-value=18 Score=30.65 Aligned_cols=48 Identities=17% Similarity=0.242 Sum_probs=33.8
Q ss_pred CCCeEEEEe----CCCCCceEEEEEEeCCCcEEEEcCC--CceeEeecchhhcc
Q psy13744 246 PNDKVKVIV----GEHKECTGVLLSVDNGEGVVKLTEE--DDVKMIDVKFLCKY 293 (296)
Q Consensus 246 kGd~VkVI~----Ge~RG~tG~LisID~~dgiVkld~~--~d~kil~~~~L~Kl 293 (296)
+|..|+|.. ..-+-.+|+|+++|++.-.+.++.. .....|++++|.|.
T Consensus 103 ~G~~V~V~l~~~~~g~k~~~G~L~~~~~~~v~l~~~~k~~~~~~~i~~~~I~ka 156 (164)
T 1ib8_A 103 VGKYIHVGLYQAIDKQKVFEGTLLAFEEDELTMEYMDKTRKKTVQIPYSLVSKA 156 (164)
T ss_dssp CSEEEEEECSSCSSSCSEEEEEEEEEETTEEEEEEECSSCEEEEEECSSCCSSC
T ss_pred CCcEEEEEEecccCCceEEEEEEEEEeCCEEEEEEecccCCeEEEEEHHHCcEE
Confidence 488999865 2246679999999988776665431 12344899998775
No 72
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=51.16 E-value=35 Score=26.41 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=40.4
Q ss_pred cCCCCCCeEEEEeCCCCCceEEEEEEeCC-CcEEEEcCCCceeEeecchhhccC
Q psy13744 242 VMPQPNDKVKVIVGEHKECTGVLLSVDNG-EGVVKLTEEDDVKMIDVKFLCKYK 294 (296)
Q Consensus 242 ViP~kGd~VkVI~Ge~RG~tG~LisID~~-dgiVkld~~~d~kil~~~~L~Kl~ 294 (296)
+.=+.||+|+--.++.+=.-|++.+|+++ ...|++++ ...+.|...+|-++.
T Consensus 20 ~~f~vGd~VlArW~D~~yYPAkI~sV~~~~~YtV~F~D-G~~etvk~~~IKp~~ 72 (85)
T 3qii_A 20 SEFQINEQVLACWSDCRFYPAKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAFS 72 (85)
T ss_dssp -CCCTTCEEEEECTTSCEEEEEEEEECTTSEEEEEETT-SCEEEEEGGGEEECC
T ss_pred cccccCCEEEEEeCCCCEeeEEEEEECCCCeEEEEEeC-CCeEEecHHHcccCC
Confidence 34467999999998778899999999775 68899876 447777777776653
No 73
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=51.03 E-value=14 Score=30.84 Aligned_cols=45 Identities=18% Similarity=0.099 Sum_probs=30.0
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEcCCC-ceeEeecchh
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEED-DVKMIDVKFL 290 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld~~~-d~kil~~~~L 290 (296)
+.|.-|+|+.|.|.|..+.++.|-.+..++ +|... .-+.++|.+|
T Consensus 8 evGRVV~i~~Gr~aGk~avIV~iiD~~rvL-VdG~~v~Rk~~n~khL 53 (134)
T 3iz5_N 8 EIGRVALVNYGKDYGRLVVIVDVVDQNRAL-VDAPDMVRCQINFKRL 53 (134)
T ss_dssp CSSEEEECSCCSSSCCEEEEEEECSSSEEE-EEETTEEEEEEECTTS
T ss_pred ccCeEEEEeeCCCCCCEEEEEEEcCCCeEE-EeCCCccceeechhHe
Confidence 468889999999999999999993333332 34322 1234566555
No 74
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=55.48 E-value=3.4 Score=31.80 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=30.6
Q ss_pred CccccCCeEEEEEec-CCeEEEEeCCCCeeeeeeCCceeEc
Q psy13744 203 DPEFRGQIGVIRHLG-SGVCSVYLAEEERTLSIEAHELEPV 242 (296)
Q Consensus 203 d~~yygqkGVVrsV~-~g~c~V~L~d~~~vv~V~q~~LEtV 242 (296)
|++||- +.|.+|. ++.|.|.+.+ +...+|..++|.++
T Consensus 19 Dg~wY~--A~I~~v~~~~~y~V~F~D-Gn~E~V~~s~LrPl 56 (81)
T 2ldm_A 19 DSRFYP--AKVTAVNKDGTYTVKFYD-GVVQTVKHIHVKAF 56 (81)
Confidence 667775 7899996 4789999988 88889999998876
No 75
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=49.61 E-value=43 Score=28.63 Aligned_cols=52 Identities=10% Similarity=0.093 Sum_probs=39.8
Q ss_pred CCCccccCCeEEEEE----ecCCeEEEEeCCCCeeeeeeCCceeEcCCCCCCeEEEE
Q psy13744 201 ARDPEFRGQIGVIRH----LGSGVCSVYLAEEERTLSIEAHELEPVMPQPNDKVKVI 253 (296)
Q Consensus 201 ~~d~~yygqkGVVrs----V~~g~c~V~L~d~~~vv~V~q~~LEtViP~kGd~VkVI 253 (296)
+....||=..++=+. |....|.|.++|+... +|+.+++.-.-=++||.|||=
T Consensus 18 G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~~~-~V~~~~vk~LeLRiGD~VKVd 73 (153)
T 2fhd_A 18 GYPSFYYPATLVAPVHSAVTSSIMYKVQFDDATMS-TVNSNQIKRFFLKKGDVVQST 73 (153)
T ss_dssp SSSCCEEEEEEEEEECCSSCCBCEEEEEETTSCEE-EEETTSEEESCCCTTCEEEET
T ss_pred CCcccccceEEEccCCCcccCCeEEEEEEcCCCCC-ccChhhceeeeeecCCEEEEC
Confidence 333456666666555 4567899999988777 899999888888899999986
No 76
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=48.61 E-value=15 Score=30.90 Aligned_cols=45 Identities=9% Similarity=0.144 Sum_probs=30.4
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEcCCC---ceeEeecchh
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEED---DVKMIDVKFL 290 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld~~~---d~kil~~~~L 290 (296)
+.|.-|+|+.|.|.|..+.++.|-.+..++ +|... .-+.+++.+|
T Consensus 16 e~GrVV~i~~Gr~aGk~avIV~iiD~~rVL-VDGp~~gV~R~~~n~khL 63 (138)
T 3izc_N 16 EVGRVVLIKKGQSAGKLAAIVEIIDQKKVL-IDGPKAGVPRQAINLGQV 63 (138)
T ss_dssp STTEEEECCSCSSSCCEEEEEEECSSSEEE-EECSSSSCCCEEEECSSS
T ss_pred ccCeEEEEeeCCCCCCEEEEEEEecCCEEE-EEcCCCCcccceechhHe
Confidence 468889999999999999999994444433 35321 1234555554
No 77
>2exd_A NFED short homolog; membrane protein; NMR {Pyrococcus horikoshii} SCOP: b.40.12.1
Probab=48.40 E-value=82 Score=23.46 Aligned_cols=45 Identities=18% Similarity=0.264 Sum_probs=30.3
Q ss_pred ccccCCeEEEEEecCCeEEEEeCCCCeeeeeeCCceeEcCCCCCCeEEEEe
Q psy13744 204 PEFRGQIGVIRHLGSGVCSVYLAEEERTLSIEAHELEPVMPQPNDKVKVIV 254 (296)
Q Consensus 204 ~~yygqkGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEtViP~kGd~VkVI~ 254 (296)
..|.|++|+|.+-......|++. ++.-++..+ ++ + .+|++|+|+.
T Consensus 14 ~~liG~~g~v~~~i~~~G~V~i~--Ge~W~A~s~--~~-i-~~G~~V~Vv~ 58 (80)
T 2exd_A 14 FELKGKVGKVVKIAEDHYLVEVE--GDKWIAYSD--EK-L-SLGDRVMVVD 58 (80)
T ss_dssp CCTTTCEEEEEECCTTCEEEEET--TEEEEECCS--SC-C-CTTCEEEEEE
T ss_pred HHccCCEEEEeEecCCCEEEEEC--CEEEEEEEC--Cc-c-CCCCEEEEEE
Confidence 36789999888865446678886 455555433 22 3 4599999986
No 78
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=48.06 E-value=1.3e+02 Score=25.70 Aligned_cols=83 Identities=11% Similarity=0.128 Sum_probs=53.7
Q ss_pred eEEEEEec-CCeEEEEeCCCCeeeeeeCCceeEcCCC-CCCeEEEEeCCCCCceEEEEEEeC--CC--cEEEEcCCCcee
Q psy13744 210 IGVIRHLG-SGVCSVYLAEEERTLSIEAHELEPVMPQ-PNDKVKVIVGEHKECTGVLLSVDN--GE--GVVKLTEEDDVK 283 (296)
Q Consensus 210 kGVVrsV~-~g~c~V~L~d~~~vv~V~q~~LEtViP~-kGd~VkVI~Ge~RG~tG~LisID~--~d--giVkld~~~d~k 283 (296)
.|.|..+. +++|.|.+.|+. .-+|-++++-.|.|- ++..|.-+.+++-...|.++.-+. ++ ..|+++ +...+
T Consensus 27 pG~V~~~~~~~~Y~V~FdDG~-~k~v~~~divv~~~LP~~~~V~A~~~ddy~s~giI~~h~~~~~e~~Y~Ve~~-G~t~~ 104 (156)
T 1ssf_A 27 SGKITRDVGAGKYKLLFDDGY-ECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIEKE-GQRKW 104 (156)
T ss_dssp EEEEEECCTTTEEEEECTTSC-EEEEETTTEEEECCSCSSEEEEESSCTTTCEEEEEEEEEEETTEEEEEEEET-TEEEE
T ss_pred ccEEEEeccCCEEEEEEcCCC-eeEeeccceEEEeccCCCcEEEEccCCccccccEEEeecCCCCcEEEEEEeC-CcEEE
Confidence 58899886 588999988754 445666667655443 368888888888888898885533 22 366663 32221
Q ss_pred ------EeecchhhccC
Q psy13744 284 ------MIDVKFLCKYK 294 (296)
Q Consensus 284 ------il~~~~L~Kl~ 294 (296)
||..|....|.
T Consensus 105 ~~~~dI~LS~eQa~~l~ 121 (156)
T 1ssf_A 105 YKRMAVILSLEQGNRLR 121 (156)
T ss_dssp ECGGGEEEEHHHHHTTT
T ss_pred EEeeeEEECHHHHHHHH
Confidence 35655555543
No 79
>4e8b_A Ribosomal RNA small subunit methyltransferase E; 16S rRNA methyltransferase; 2.25A {Escherichia coli}
Probab=45.99 E-value=18 Score=32.31 Aligned_cols=48 Identities=13% Similarity=0.235 Sum_probs=37.7
Q ss_pred CeeeeeeC---CceeEcC-CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEE
Q psy13744 229 ERTLSIEA---HELEPVM-PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276 (296)
Q Consensus 229 ~~vv~V~q---~~LEtVi-P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl 276 (296)
+..+.++. .||-.|+ =+.||+|.|.+|+.+...++|.+|+.....+++
T Consensus 15 ~~~i~L~~~~~~Hl~~VLR~~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i 66 (251)
T 4e8b_A 15 HSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEVKV 66 (251)
T ss_dssp TCEEECCHHHHHHHHTTSCCCSCCEEEEECSSSEEEEEEEEEECSSCEEEEE
T ss_pred CCEEEeCHHHHHHHHHhCcCCCCCEEEEEeCCCcEEEEEEEEeecceEEEEE
Confidence 34455544 3676675 567999999999988899999999999888775
No 80
>1vhy_A Hypothetical protein HI0303; PSI, protein structure initiative, NEW YORK SGX research CEN structural genomics, nysgxrc; HET: MSE; 1.90A {Haemophilus influenzae} SCOP: b.122.1.2 c.116.1.5 PDB: 1nxz_A
Probab=45.98 E-value=20 Score=32.29 Aligned_cols=42 Identities=7% Similarity=0.199 Sum_probs=34.6
Q ss_pred CceeEcC-CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEcC
Q psy13744 237 HELEPVM-PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTE 278 (296)
Q Consensus 237 ~~LEtVi-P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld~ 278 (296)
.||-.|+ =+.||+|.|.+|......++|..++.+...+++.+
T Consensus 28 ~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~~~~~~~~~~i~~ 70 (257)
T 1vhy_A 28 NHVARVLRMTEGEQLELFDGSNHIYPAKIIESNKKSVKVEILG 70 (257)
T ss_dssp HHHHTTSCCCTTCEEEEECSSSEEEEEEEEEECSSCEEEEECC
T ss_pred HHHHHHhccCCCCEEEEEcCCCCEEEEEEEEeeCCeEEEEEEE
Confidence 4665564 56799999999988889999999999988888743
No 81
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=45.77 E-value=21 Score=27.70 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=26.7
Q ss_pred CCCeEEEEeCCCCCceEEEEEEeCCCcEEEE
Q psy13744 246 PNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276 (296)
Q Consensus 246 kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl 276 (296)
.|.+|+|..-+-+-.+|.|.++|...+.|-|
T Consensus 16 i~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL 46 (86)
T 1y96_A 16 IYKEVRVTASEKNEYKGWVLTTDPVSANIVL 46 (86)
T ss_dssp TTCEEEEEETTTEEEEEEEEEECTTTCCEEE
T ss_pred cCCEEEEEEcCCCEEEEEEEEECCCceEEEE
Confidence 4889999999999999999999987775544
No 82
>1ts9_A Ribonuclease P protein component 1; anti-parallel, beta-sheet, alpha helix, internal salt bridge, selenomethionine, SM-fold, hydrolase; 1.70A {Archaeoglobus fulgidus} SCOP: b.137.1.1 PDB: 1tsf_A 1pc0_A
Probab=44.17 E-value=1e+02 Score=24.21 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=25.8
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecCCeEEEEe
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYL 225 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~g~c~V~L 225 (296)
+|+ |..|+|.++ .+..|.|.+|+|..=...+..|.-
T Consensus 14 dl~--G~~v~Vv~S-~~pslVGi~GiVV~ETkntf~I~t 49 (102)
T 1ts9_A 14 DWI--GLMVEVVES-PNHSEVGIKGEVVDETQNTLKIMT 49 (102)
T ss_dssp CCT--TCEEEEEEC-SSGGGTTCEEEEEEECSSEEEEEE
T ss_pred hhc--CCEEEEEEc-CCCCccCcEEEEEEeccceEEEEe
Confidence 565 777788754 357899999999886666665554
No 83
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=43.09 E-value=26 Score=26.23 Aligned_cols=54 Identities=11% Similarity=0.079 Sum_probs=37.9
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecC-CeEEEEeCCCCeeeeeeCCceeEcCC
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGS-GVCSVYLAEEERTLSIEAHELEPVMP 244 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~-g~c~V~L~d~~~vv~V~q~~LEtViP 244 (296)
.|..-++++ ++- .+|+++| .++|.+|.+ +.|.|.+.|-+.+..|..++|-.+.+
T Consensus 27 ~~~~G~~c~-a~~-~~d~~wy--RA~I~~~~~~~~~~V~fvDyGn~e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 27 TVHVGDIVA-APL-PTNGSWY--RARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRS 81 (94)
T ss_dssp CCCTTCEEE-EEE-TTTTEEE--EEEEEEECTTSCEEEEETTTCCEEEECGGGCEECCG
T ss_pred CCCCCCEEE-EEE-CCCCeEE--EEEEEEECCCCeEEEEEEcCCCeEEEEHHHhhhcCH
Confidence 464444443 321 2345555 578999964 78999999988899999999887654
No 84
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=42.25 E-value=29 Score=26.97 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=29.9
Q ss_pred CCCCeEEEEeCCCCCceEEEEEE-eCCCcEEEEcCC-----CceeEeecchh
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSV-DNGEGVVKLTEE-----DDVKMIDVKFL 290 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisI-D~~dgiVkld~~-----~d~kil~~~~L 290 (296)
+.|.-|+++.|.|+|....++.+ |..-.. +++. ...+.+++.+|
T Consensus 5 ~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vL--V~gp~~~~~~~rk~~n~khl 54 (96)
T 2joy_A 5 EVGRICVKVKGREAGSKCVIVDIIDDNFVL--VTGPKDITGVKRRRVNILHL 54 (96)
T ss_dssp STTEEEECSSSSTTCCEEEEEEECSSSCEE--EECCTTTTCCCCEEESCSSC
T ss_pred ccCEEEEEeecCCCCCEEEEEEEeCCCEEE--EECCcccCCcCCEEEchHHE
Confidence 46888888999999999999999 544333 3332 22455666555
No 85
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=41.74 E-value=88 Score=26.60 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=24.7
Q ss_pred eEEEEEecCCeEEEEeCCCCeeeeeeCCceeEcCC-----CCCCeEEEEe
Q psy13744 210 IGVIRHLGSGVCSVYLAEEERTLSIEAHELEPVMP-----QPNDKVKVIV 254 (296)
Q Consensus 210 kGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEtViP-----~kGd~VkVI~ 254 (296)
+|+|.++.++.|.+. |..-++.|.. |+-|.+ +.|.-|+||.
T Consensus 64 QG~VV~~~~g~~~Ld--DgTG~~~v~g--~~~vp~g~p~l~~G~YVMV~G 109 (150)
T 3mxn_B 64 QGRVVMADRGEARLR--DPSGDFSVRG--LERVPRGRPCLVPGKYVMVMG 109 (150)
T ss_dssp EEEEEEEETTEEEEE--ETTEEEEEEC--GGGSCCCSCCCSTTCEEEEEE
T ss_pred EeEEEEeCCCeEEEE--CCCceEEEee--ccccCCCCcccCCCCEEEEEE
Confidence 688888766765443 3333455532 444533 3688999884
No 86
>3kw2_A Probable R-RNA methyltransferase; structural genomics, unknown function, PSI-2, protein structure initiative; HET: MSE ADN; 2.00A {Porphyromonas gingivalis atcc 33277}
Probab=41.33 E-value=21 Score=32.25 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=33.7
Q ss_pred CCceeEcC-CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 236 AHELEPVM-PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 236 q~~LEtVi-P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
..||-.|+ =+.||+|.|++|+.+...++|..|+.+...+++.
T Consensus 24 ~~Hl~~VLRl~~Gd~v~l~dg~g~~~~a~I~~i~~~~~~~~i~ 66 (257)
T 3kw2_A 24 AGHILRVLRMQAGDRLRLTDGRGSFFDAVIETADRKSCYVSVC 66 (257)
T ss_dssp HHHHHTTSCCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEEE
T ss_pred HHHHHHhccCCCCCEEEEEECCCCEEEEEEEEeeCCEEEEEEE
Confidence 34555564 5679999999999888899999999988877753
No 87
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=41.29 E-value=38 Score=27.69 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=34.0
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEec--CCeEEEEeC------CCCeeeeeeCCceeEcCCCCC
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLG--SGVCSVYLA------EEERTLSIEAHELEPVMPQPN 247 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~--~g~c~V~L~------d~~~vv~V~q~~LEtViP~kG 247 (296)
+..|=+|.|+. +++.|++|.|..|. .+.+.|+-. ......-|+.+++..+-|+.+
T Consensus 43 IkkGD~V~Vi~----G~dKGk~GkV~~V~~k~~~V~VEgvn~kK~~Gg~~e~pIh~SNV~i~~~~~~ 105 (120)
T 1vq8_T 43 VNAGDTVEVLR----GDFAGEEGEVINVDLDKAVIHVEDVTLEKTDGEEVPRPLDTSNVRVTDLDLE 105 (120)
T ss_dssp CCTTCEEEECS----STTTTCEEEEEEEETTTTEEEETTCEEECSSSCEEECCBCGGGEEEEECCCC
T ss_pred ccCCCEEEEEe----cCCCCCEEEEEEEECCCCEEEEeCeEeEcCCCCEEEeeechHHEEEEeccCC
Confidence 45555777874 35679999999996 355555533 123344556666666666543
No 88
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=41.12 E-value=71 Score=23.88 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=34.4
Q ss_pred CeEEEEEecCCeEEEEeCCC-CeeeeeeCC-ce--------eEcCCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEE
Q psy13744 209 QIGVIRHLGSGVCSVYLAEE-ERTLSIEAH-EL--------EPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276 (296)
Q Consensus 209 qkGVVrsV~~g~c~V~L~d~-~~vv~V~q~-~L--------EtViP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl 276 (296)
-+|+|+ |.+.-|-|.|.+. +..=-|.-+ +| +-+. .||+|+| +++++|.+.+-+.|
T Consensus 15 ~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~~~~~~~~~~~--~Gd~V~V----------kV~~vd~~~~kI~l 79 (88)
T 1luz_A 15 IKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHMDRYVEYRDKL--VGKTVKV----------KVIRVDYTKGYIDV 79 (88)
T ss_dssp EEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCHHHHHHHHHHH--TTCEEEE----------EEEEEETTTTEEEE
T ss_pred EEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCcccccCHhHEe--CCCEEEE----------EEEEEECCCCEEEE
Confidence 367899 9887788888652 222233444 33 2334 7888776 46788887776654
No 89
>1vhk_A Hypothetical protein YQEU; structural genomics, unknown function; 2.60A {Bacillus subtilis} SCOP: b.122.1.2 c.116.1.5
Probab=40.66 E-value=23 Score=32.05 Aligned_cols=41 Identities=20% Similarity=0.165 Sum_probs=33.7
Q ss_pred CceeEcC-CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 237 HELEPVM-PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 237 ~~LEtVi-P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
.||-.|+ =+.||+|.|.+|......++|..++.+...+++.
T Consensus 29 ~Hl~~VLRl~~Gd~i~l~dg~G~~~~a~I~~~~~~~~~~~i~ 70 (268)
T 1vhk_A 29 HHIVNVMRMNEGDQIICCSQDGFEAKCELQSVSKDKVSCLVI 70 (268)
T ss_dssp HHHHTTTCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEE
T ss_pred HHHHHhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEEE
Confidence 4565554 5679999999999999999999999988877763
No 90
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=40.01 E-value=1e+02 Score=22.33 Aligned_cols=49 Identities=12% Similarity=0.063 Sum_probs=36.7
Q ss_pred CCCCeEEEEeCCCCCceEEEEEEeCC--CcEEEEcCCCceeEeecchhhccC
Q psy13744 245 QPNDKVKVIVGEHKECTGVLLSVDNG--EGVVKLTEEDDVKMIDVKFLCKYK 294 (296)
Q Consensus 245 ~kGd~VkVI~Ge~RG~tG~LisID~~--dgiVkld~~~d~kil~~~~L~Kl~ 294 (296)
..|+.|++-.=+-|=.-|+++.||.. ...|+++++. ...+...+|-|++
T Consensus 5 ~~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s-~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 5 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDS-QFLVLWKDISPAA 55 (58)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSC-EEEEEGGGEEECS
T ss_pred ccCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCC-eEEEEhHHccccc
Confidence 35888888776666689999999877 5788887654 4457788887765
No 91
>2wsc_E PSAE, PSI-E A, photosystem I reaction center subunit IV A, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_E* 2wsf_E* 2o01_E* 3lw5_E*
Probab=38.39 E-value=3.7 Score=34.43 Aligned_cols=40 Identities=28% Similarity=0.468 Sum_probs=30.8
Q ss_pred eeEcCCCCCCeEEEEeCC--CCCceEEEEEEeCCCc-----EEEEcC
Q psy13744 239 LEPVMPQPNDKVKVIVGE--HKECTGVLLSVDNGEG-----VVKLTE 278 (296)
Q Consensus 239 LEtViP~kGd~VkVI~Ge--~RG~tG~LisID~~dg-----iVkld~ 278 (296)
-.+|=|++|++|+||.=| |--.+|++.+||.+.+ +||+|.
T Consensus 76 pp~igp~RGskVrIlR~ESYWyn~vGtVvsVDqs~girYPVvVRF~K 122 (143)
T 2wsc_E 76 PPPIGPKRGSKVKILRRESYWFKNVGSVVAVDQDPKTRYPVVVRFAK 122 (143)
T ss_dssp ---CCSCSSSCBCCCSSSSTTTTSCBBCCCCCCSSCCSCCCBCBCSC
T ss_pred CCCCCCCCCCEeEEccccceeecCcceEEEEecCCCccccEEEEeee
Confidence 366779999999999976 5788999999999754 567654
No 92
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=38.01 E-value=1.4e+02 Score=23.77 Aligned_cols=56 Identities=27% Similarity=0.279 Sum_probs=30.2
Q ss_pred eEEEEEecCCeEEEEeCCCCeeeeeeCCceeE-------cCCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEE
Q psy13744 210 IGVIRHLGSGVCSVYLAEEERTLSIEAHELEP-------VMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276 (296)
Q Consensus 210 kGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEt-------ViP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl 276 (296)
.|+|..|.+.-|-|.|.+. ..--|..++|.- -.-+.||+|+| ++++||.+++-|.|
T Consensus 12 ~G~V~~i~~~G~FV~l~~~-~~Glihisel~~~~~~~~~~~~~vGd~V~v----------kV~~vd~~~~kI~L 74 (130)
T 2k4k_A 12 TGKVTGLQAYGAFVALDEE-TQGLVHISEVTHGFVKDINEHLSVGDEVQV----------KVLAVDEEKGKISL 74 (130)
T ss_dssp EEEEEEEETTEEEEEEETT-EEEEEEGGGTSSSCCSCGGGTCCTTCEEEE----------EEEEEETTTTEEEE
T ss_pred EEEEEEEeCCeEEEEECCC-cEEEEEHHHCCcccccCccccCCCCCEEEE----------EEEEEeCCCCEEEE
Confidence 5677777765566666432 223344444321 12345776654 45667766665554
No 93
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=37.46 E-value=94 Score=23.01 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=31.4
Q ss_pred cCceEEEEecCCCCccccCCeEEEEEec--CCeEEEEeCCCCeeeeeeCCceeE
Q psy13744 190 TTDIEVRINENARDPEFRGQIGVIRHLG--SGVCSVYLAEEERTLSIEAHELEP 241 (296)
Q Consensus 190 ~~dI~VkI~~~~~d~~yygqkGVVrsV~--~g~c~V~L~d~~~vv~V~q~~LEt 241 (296)
..+=.|..+ ..|+.||- |.|++|. .++|.|.+.|+.+ .-|.-.+|.+
T Consensus 15 ~vGddVLA~--wtDGl~Y~--gtI~~V~~~~gtC~V~F~D~s~-~w~~~kdi~~ 63 (66)
T 2eqj_A 15 EEGQDVLAR--WSDGLFYL--GTIKKINILKQSCFIIFEDSSK-SWVLWKDIQT 63 (66)
T ss_dssp CTTCEEEEE--CTTSCEEE--EEEEEEETTTTEEEEEETTTEE-EEEETTTEEC
T ss_pred cCCCEEEEE--EccCcEEE--eEEEEEccCCcEEEEEEccCCE-EEEEeecccc
Confidence 455556544 35677774 8999996 4999999987543 3355555543
No 94
>2heq_A YORP protein; SH3-like, structure, BSU2030, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Bacillus subtilis} SCOP: b.34.20.1
Probab=37.38 E-value=1.2e+02 Score=22.98 Aligned_cols=60 Identities=27% Similarity=0.344 Sum_probs=38.8
Q ss_pred CCCCCCCc-ccCceEEEEec--CCCCccccCCeEEEEEecC---CeEEEEeCCCCeeeeeeCCceeEc
Q psy13744 181 DQYPTPEW-HTTDIEVRINE--NARDPEFRGQIGVIRHLGS---GVCSVYLAEEERTLSIEAHELEPV 242 (296)
Q Consensus 181 d~~~~~~W-l~~dI~VkI~~--~~~d~~yygqkGVVrsV~~---g~c~V~L~d~~~vv~V~q~~LEtV 242 (296)
|+|-. .| .-.++.|.|.. +..=..+.|+||+|.+... ....| +.+.+++-..-..+|.++
T Consensus 4 dpmPK-yWsYp~gl~VeIN~NAkygcPhhVGrkGkIie~~hSa~YDYaV-sdetGdIt~fKEhElnp~ 69 (84)
T 2heq_A 4 DPLPK-YWSYPVGLAVEINNNARYGCPHHVGRKGKIIEHLHSATYDYAV-SDETGDITYFKEHELTPL 69 (84)
T ss_dssp CCCCS-SCCSCTTCEEEECTTCTTTSTTCCSSEEEEEEECCCSSCSEEE-EETTSCEEEECGGGEEEC
T ss_pred CCCcc-ccccCCCCEEEEcCCcccCCccccccccchhhhhhhheeeeee-ecccCceeeeeccccccc
Confidence 34434 78 55689998874 2333567899999999863 22233 345667777777777654
No 95
>1z85_A Hypothetical protein TM1380; alpha/beta knot fold, structural genomics, joint center for structural genomics, JCSG; 2.12A {Thermotoga maritima}
Probab=36.85 E-value=29 Score=30.88 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=34.2
Q ss_pred CCceeEcC-CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEE
Q psy13744 236 AHELEPVM-PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276 (296)
Q Consensus 236 q~~LEtVi-P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl 276 (296)
..|| -|+ =+.||+|.|.+|+.+...++|..++.+...+++
T Consensus 33 ~~Hl-~VLRl~~Gd~v~l~dg~G~~~~a~I~~~~~~~~~~~i 73 (234)
T 1z85_A 33 AHHM-RVVRLKEGDVIEATDGNGFSYTCILKSLKKKTAAAKI 73 (234)
T ss_dssp HHHH-HHTTCCTTCEEEEECSBSEEEEEEEEEECSSCEEEEE
T ss_pred HHHH-HhhcCCCCCEEEEEeCCCCEEEEEEEEecCCEEEEEE
Confidence 4578 775 467999999999999999999999999887775
No 96
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=36.42 E-value=76 Score=24.53 Aligned_cols=34 Identities=12% Similarity=-0.151 Sum_probs=23.2
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEecC-CeEEEEeC
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLGS-GVCSVYLA 226 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~~-g~c~V~L~ 226 (296)
+..|=+|.+. .+++.|++.||.++.| +.|-|.=+
T Consensus 4 v~~GrVv~~~----~Gr~~Gk~~VIv~~iD~~~vLV~gp 38 (96)
T 2joy_A 4 IEVGRICVKV----KGREAGSKCVIVDIIDDNFVLVTGP 38 (96)
T ss_dssp SSTTEEEECS----SSSTTCCEEEEEEECSSSCEEEECC
T ss_pred cccCEEEEEe----ecCCCCCEEEEEEEeCCCEEEEECC
Confidence 4567677554 2467899999999954 66655533
No 97
>1gxi_E Photosystem I reaction center subunit IV; photosynthesis, PSAE SUB-UNIT, thylakoid; NMR {Synechocystis SP} SCOP: b.34.4.2 PDB: 1pse_A 1psf_A
Probab=35.99 E-value=9.8 Score=28.76 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=27.0
Q ss_pred CCCCeEEEEeCC--CCCceEEEEEEeCCC----cEEEEcC
Q psy13744 245 QPNDKVKVIVGE--HKECTGVLLSVDNGE----GVVKLTE 278 (296)
Q Consensus 245 ~kGd~VkVI~Ge--~RG~tG~LisID~~d----giVkld~ 278 (296)
++|++|+|+.=| +-..+|++.+||.+. -+||+|.
T Consensus 3 ~RGskVrIlR~ESYWyn~vGtVasVD~sgi~YPVvVRF~k 42 (73)
T 1gxi_E 3 NRGDKVRIKRTESYWYGDVGTVASVEKSGILYPVIVRFDR 42 (73)
T ss_dssp CTTCCEEECCSSSTTTTEEECBCCTTTCCSSSCEEECCSC
T ss_pred cCCCEEEEccccceeecCcceEEEEcCCCCEeeEEEEEEe
Confidence 579999999976 578899999999862 2677653
No 98
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=35.50 E-value=95 Score=25.79 Aligned_cols=31 Identities=16% Similarity=0.013 Sum_probs=22.2
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEecC-CeEEE
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLGS-GVCSV 223 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~~-g~c~V 223 (296)
+..|=+|.|. .++|.|+++||.+|.| +.|-|
T Consensus 7 vevGRVV~i~----~Gr~aGk~avIV~iiD~~rvLV 38 (134)
T 3iz5_N 7 VEIGRVALVN----YGKDYGRLVVIVDVVDQNRALV 38 (134)
T ss_dssp CCSSEEEECS----CCSSSCCEEEEEEECSSSEEEE
T ss_pred cccCeEEEEe----eCCCCCCEEEEEEEcCCCeEEE
Confidence 4456566554 3578899999999975 66666
No 99
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=35.39 E-value=40 Score=28.31 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=31.7
Q ss_pred CccccCCeEEEEEecCCeEEEEeCCCCeeeeeeCCceeEcCC
Q psy13744 203 DPEFRGQIGVIRHLGSGVCSVYLAEEERTLSIEAHELEPVMP 244 (296)
Q Consensus 203 d~~yygqkGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEtViP 244 (296)
|+++| .|+|.+|.++.|.|++.|-+.+..|..++|-.+.+
T Consensus 65 d~~wy--Ra~V~~v~~~~~~V~~vDyG~~~~v~~~~l~~l~~ 104 (218)
T 2wac_A 65 DNQWY--RAKVERVQGSNATVLYIDYGNKETLPTNRLAALPP 104 (218)
T ss_dssp TCCEE--EEEEEEEETTEEEEEETTTCCEEEEEGGGEEECCG
T ss_pred CCeEE--EEEEEEecCCeEEEEEEecCCeEEEchHHcccCCh
Confidence 44554 48899998899999999888888888888877654
No 100
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=34.64 E-value=20 Score=29.67 Aligned_cols=29 Identities=14% Similarity=0.220 Sum_probs=23.4
Q ss_pred CCCeEEEEeCCCCCceEEEEEE-eCCCcEE
Q psy13744 246 PNDKVKVIVGEHKECTGVLLSV-DNGEGVV 274 (296)
Q Consensus 246 kGd~VkVI~Ge~RG~tG~LisI-D~~dgiV 274 (296)
.|.-|+|..|.|.|..+.++.| |.+-..|
T Consensus 9 vGRVv~i~~G~~aGklavIVdIID~nrvLV 38 (126)
T 4a18_F 9 VGRVVYINYGADKGKLAVIVNIINQNRILI 38 (126)
T ss_dssp TTEEEEECSSTTTTEEEEEEEEETTTEEEE
T ss_pred cceEEEEccCCccCCEEEEEEEecCCeEEE
Confidence 4778888899999999999999 6654444
No 101
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=34.52 E-value=1e+02 Score=20.67 Aligned_cols=48 Identities=13% Similarity=0.164 Sum_probs=30.6
Q ss_pred CCCCeEEEEeC-CCCCceEEEEEEeCCC--cEEEEcCCCceeEeecchhhc
Q psy13744 245 QPNDKVKVIVG-EHKECTGVLLSVDNGE--GVVKLTEEDDVKMIDVKFLCK 292 (296)
Q Consensus 245 ~kGd~VkVI~G-e~RG~tG~LisID~~d--giVkld~~~d~kil~~~~L~K 292 (296)
++|+.+....- +.+=.+|++++|+.++ ..|+..+=.+...+++++|--
T Consensus 3 k~G~~c~A~~s~Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrp 53 (54)
T 3s6w_A 3 KPGDECFALYWEDNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKP 53 (54)
T ss_dssp CTTCEEEEEETTTTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGEEC
T ss_pred CCCCEEEEEECCCCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEE
Confidence 57888888873 3345789999997643 556653323366788887743
No 102
>2jng_A Cullin-7, CUL-7; P53 binding domain, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} SCOP: b.34.9.4 PDB: 2juf_A
Probab=34.45 E-value=1.6e+02 Score=23.61 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=43.5
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEec-CC--eEEEEeCCCCeeeeeeCCceeEcCCCCCCeEEE
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLG-SG--VCSVYLAEEERTLSIEAHELEPVMPQPNDKVKV 252 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~-~g--~c~V~L~d~~~vv~V~q~~LEtViP~kGd~VkV 252 (296)
+.+++.||..+..++=+ .|-.|.|+ ++ ++ -+.|.....+.+.-|.--+||.+-+....+..+
T Consensus 22 l~pGM~VR~~~dyeev~-~GD~G~vl-~s~~Gl~~vQv~W~~~G~TyWV~~~~~Ellg~~~~~~~~~ 86 (105)
T 2jng_A 22 LQPGMRVRMLDDYEEIS-AGDEGEFR-QSNNGVPPVQVFWESTGRTYWVHWHMLEILGFEEDIEDMV 86 (105)
T ss_dssp CCTTCEEEECSCBTTBC-TTCEEEEE-EECTTSSEEEEEETTTTEEEEEEGGGEEECCCCC------
T ss_pred CCCccEEeeehhhhhhc-cCCceeEE-ecCCCCccceeeehhcCceEEEEeehhhhcCCcccccchh
Confidence 67899999986555432 37789998 54 43 467777889999999999999997765544444
No 103
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=34.02 E-value=21 Score=22.06 Aligned_cols=16 Identities=38% Similarity=0.601 Sum_probs=7.8
Q ss_pred CCCCCCCcCCCCCccc
Q psy13744 23 RGGGRGGHHGGNVRRD 38 (296)
Q Consensus 23 ~~~~~~g~~~~~~rrd 38 (296)
+|||+|..+-.|+.-|
T Consensus 3 ggggggaashqrvtpd 18 (29)
T 1cn3_F 3 GGGGGGAASHQRVTPD 18 (29)
T ss_dssp CCCCSTTTCCCCCEEG
T ss_pred CCCCCccccccccCch
Confidence 3444444455555544
No 104
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=33.85 E-value=1.2e+02 Score=22.42 Aligned_cols=48 Identities=6% Similarity=-0.048 Sum_probs=34.4
Q ss_pred CCCCCeEEEEeCCCCCceEEEEEEeCC--CcEEEEcCCCceeEeecchhhc
Q psy13744 244 PQPNDKVKVIVGEHKECTGVLLSVDNG--EGVVKLTEEDDVKMIDVKFLCK 292 (296)
Q Consensus 244 P~kGd~VkVI~Ge~RG~tG~LisID~~--dgiVkld~~~d~kil~~~~L~K 292 (296)
=+.|+.|+...=+-+=..|++++||.. .+.|+..++. ...+...+|-+
T Consensus 14 f~vGddVLA~wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s-~~w~~~kdi~~ 63 (66)
T 2eqj_A 14 FEEGQDVLARWSDGLFYLGTIKKINILKQSCFIIFEDSS-KSWVLWKDIQT 63 (66)
T ss_dssp SCTTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTTE-EEEEETTTEEC
T ss_pred ccCCCEEEEEEccCcEEEeEEEEEccCCcEEEEEEccCC-EEEEEeecccc
Confidence 356999999875557799999999875 5578876543 44566666544
No 105
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=33.52 E-value=28 Score=29.41 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=20.6
Q ss_pred CCCeEEEEeCCCCCceEEEEEE-eC
Q psy13744 246 PNDKVKVIVGEHKECTGVLLSV-DN 269 (296)
Q Consensus 246 kGd~VkVI~Ge~RG~tG~LisI-D~ 269 (296)
.|.-|+|+.|.|.|..+.++.+ |.
T Consensus 7 pGrVvivl~Gr~aGkkaVIvk~iD~ 31 (144)
T 4a18_N 7 YGRVVILLQGRFAGKKAVIVKSSED 31 (144)
T ss_dssp TTEEEEECSSTTTTCEEEEEEEESS
T ss_pred CCeEEEEecCCcCCCEEEEEEecCC
Confidence 5777888889999999999988 54
No 106
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=33.40 E-value=55 Score=24.21 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=37.4
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEec--CCeEEEEeCCCCeeeeeeCCceeEcCCC
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLG--SGVCSVYLAEEERTLSIEAHELEPVMPQ 245 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~--~g~c~V~L~d~~~vv~V~q~~LEtViP~ 245 (296)
.|-.-+++. .+ -.+|+.+| .|+|.+|. ++.|.|...|-+.+..|..++|.++.+.
T Consensus 17 ~~kvGd~C~-A~-ys~Dg~wY--RA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 17 MWKPGDECF-AL-YWEDNKFY--RAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE 73 (77)
T ss_dssp TCCTTCEEE-EE-ETTTTEEE--EEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred CCCcCCEEE-EE-ECCCCCEE--EEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence 475545443 33 12455666 48999996 3689999998888889999999886554
No 107
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=33.04 E-value=1.6e+02 Score=22.36 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=32.9
Q ss_pred CeEEEEEecCCeEEEEeCCCCeeeeeeCCceeE--c-----CCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEE
Q psy13744 209 QIGVIRHLGSGVCSVYLAEEERTLSIEAHELEP--V-----MPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276 (296)
Q Consensus 209 qkGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEt--V-----iP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl 276 (296)
-+|+|++|.+.-|-|.|.+. ..--|..++|.- + .-+.||+|+ ++++.||.+..-+.|
T Consensus 35 v~G~V~~v~~~G~fV~l~~~-~~Gll~~sel~~~~~~~~~~~~~vGd~V~----------v~V~~vd~~~~ki~L 98 (109)
T 2khj_A 35 VTGKVTAVDAKGATVELADG-VEGYLRASEASRDRVEDATLVLSVGDEVE----------AKFTGVDRKNRAISL 98 (109)
T ss_dssp EEEEEEEECSSCEEEECSTT-CBCCBCTTCCCSSSSSSGGGSCCTTCEEE----------EEEEEEETTTTEEEE
T ss_pred EEEEEEEEECCeEEEEECCC-CEEEEEHHHcCcccccChhhccCCCCEEE----------EEEEEEECCCCEEEE
Confidence 35788888876677888642 222234444421 1 234566665 456777777655554
No 108
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.60 E-value=48 Score=25.20 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=22.9
Q ss_pred CCCCCeEEEEeCCCCCceEEEEEE-eCC
Q psy13744 244 PQPNDKVKVIVGEHKECTGVLLSV-DNG 270 (296)
Q Consensus 244 P~kGd~VkVI~Ge~RG~tG~LisI-D~~ 270 (296)
-+.|.-|+++.|.|+|..+.++.| |..
T Consensus 4 ~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~ 31 (83)
T 3j21_5 4 IDVGRIAVVIAGRRAGQKVVVVDIIDKN 31 (83)
T ss_dssp CCTTEEEECSSSSSSCCCEEEEEECSSS
T ss_pred cccCEEEEEeecCCCCCEEEEEEEcCCC
Confidence 356888999999999999999997 544
No 109
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=32.19 E-value=64 Score=24.80 Aligned_cols=52 Identities=13% Similarity=-0.007 Sum_probs=33.3
Q ss_pred cCCCCCCeEEEEe-CCCCCceEEEEEEeC-CCcEEEEcCCCceeEeecchhhcc
Q psy13744 242 VMPQPNDKVKVIV-GEHKECTGVLLSVDN-GEGVVKLTEEDDVKMIDVKFLCKY 293 (296)
Q Consensus 242 ViP~kGd~VkVI~-Ge~RG~tG~LisID~-~dgiVkld~~~d~kil~~~~L~Kl 293 (296)
..|++|+.|.+.. .+..=.+|++++|+. +...|.+-+=.+...+++++|..|
T Consensus 31 ~~~~~G~~c~a~~~~d~~wyRA~V~~~~~~~~~~V~fvDyGn~e~v~~~~Lr~l 84 (110)
T 2diq_A 31 LTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRAL 84 (110)
T ss_dssp CCCCTTCEEEECCTTTCSCEEEEECCCCSSSCEEEEETTTCCEEEECGGGCEEC
T ss_pred CCCCCCCEEEEEECCCCeEEEEEEEEECCCCeEEEEEEeCCCeEEEehHHhhcC
Confidence 3578899988864 223338899999976 455676532223556666666655
No 110
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=31.24 E-value=30 Score=26.74 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=37.7
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecC-CeEEEEeCCCCeeeeeeCCceeEcCC
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGS-GVCSVYLAEEERTLSIEAHELEPVMP 244 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~-g~c~V~L~d~~~vv~V~q~~LEtViP 244 (296)
.|..-++++ .+ -.+|+++| .++|.+|.+ +.|.|++.|-+.+..|+.++|..+.+
T Consensus 32 ~~~~G~~c~-a~-~~~d~~wy--RA~V~~~~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~ 86 (110)
T 2diq_A 32 TVHVGDIVA-AP-LPTNGSWY--RARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRS 86 (110)
T ss_dssp CCCTTCEEE-EC-CTTTCSCE--EEEECCCCSSSCEEEEETTTCCEEEECGGGCEECCH
T ss_pred CCCCCCEEE-EE-ECCCCeEE--EEEEEEECCCCeEEEEEEeCCCeEEEehHHhhcCcH
Confidence 464444443 33 22355665 578888864 88999999999899999999887643
No 111
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=30.79 E-value=47 Score=30.07 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=14.9
Q ss_pred CCeEEEEeCCCCCceEEEEEEeCCC
Q psy13744 247 NDKVKVIVGEHKECTGVLLSVDNGE 271 (296)
Q Consensus 247 Gd~VkVI~Ge~RG~tG~LisID~~d 271 (296)
+.+|+|..=..|..+|+|++.|..-
T Consensus 14 dKrV~V~LkdGRel~GtLkgFDq~M 38 (231)
T 3pgw_B 14 DYRMRCILQDGRIFIGTFKAFDKHM 38 (231)
T ss_pred CCeEEEEECCCcEEEEEEEEEcccc
Confidence 4556665544566666666666653
No 112
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=30.22 E-value=1.1e+02 Score=25.19 Aligned_cols=48 Identities=15% Similarity=0.015 Sum_probs=29.3
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEecC-CeEEEEeCCCCeeeeeeCCceeE
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLGS-GVCSVYLAEEERTLSIEAHELEP 241 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~~-g~c~V~L~d~~~vv~V~q~~LEt 241 (296)
+..|=+|.|. .+.|.|+++||.+|.| +.|-|.=++ -.--.+.-.||++
T Consensus 7 vevGRVv~i~----~G~~aGklavIVdIID~nrvLVdGp~-V~Rq~~n~k~l~L 55 (126)
T 4a18_F 7 VQVGRVVYIN----YGADKGKLAVIVNIINQNRILIDGEH-IVRQVIPIRRVHL 55 (126)
T ss_dssp EETTEEEEEC----SSTTTTEEEEEEEEETTTEEEEEETT-EEEEEEEGGGEEE
T ss_pred eecceEEEEc----cCCccCCEEEEEEEecCCeEEEeCCC-cccceeeccceEE
Confidence 3445556554 3568899999999976 777664443 1112355566654
No 113
>1v6z_A Hypothetical protein TTHA0657; structural genomics, riken structural genomics/proteomics initiative, RSGI, transferase; 2.00A {Thermus thermophilus HB8} SCOP: b.122.1.2 c.116.1.5 PDB: 2cx8_A* 2z0y_A*
Probab=30.21 E-value=42 Score=29.53 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=32.2
Q ss_pred CCceeEcC-CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 236 AHELEPVM-PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 236 q~~LEtVi-P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
..||-.|+ =+.||+|.|.+|+. ...++|..++. ...+++.
T Consensus 20 ~~Hl~~VlRl~~Gd~v~l~dg~g-~~~a~i~~~~~-~~~~~i~ 60 (228)
T 1v6z_A 20 TRHLVEVLRARVGDRFTVFDGER-EALAEVVDLGP-PLRYRVL 60 (228)
T ss_dssp HHHHHTTSCCCTTCEEEEECSSC-EEEEEEEECCS-SCEEEEE
T ss_pred HHHHHHhccCCCCCEEEEEeCCc-EEEEEEEECCC-eEEEEEE
Confidence 34665564 56799999999999 99999999998 8877753
No 114
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=30.19 E-value=98 Score=23.11 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=27.8
Q ss_pred eEEEEEecCCeEEEEeCCCCeeeeeeCCceeEcCCCCCCeEEEEeC
Q psy13744 210 IGVIRHLGSGVCSVYLAEEERTLSIEAHELEPVMPQPNDKVKVIVG 255 (296)
Q Consensus 210 kGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEtViP~kGd~VkVI~G 255 (296)
-|.|.+|.+..+.|.+. +...+|+-..|+.+ +.||.|+|=.|
T Consensus 6 P~kVvei~~~~A~vd~~--Gv~r~V~l~Lv~~~--~vGD~VLVH~G 47 (75)
T 2z1c_A 6 PGKVIEVNGPVAVVDFG--GVKREVRLDLMPDT--KPGDWVIVHTG 47 (75)
T ss_dssp CEEEEEEETTEEEEEET--TEEEEEECTTSTTC--CTTCEEEEETT
T ss_pred cEEEEEECCCEEEEEcC--CEEEEEEEEEeCCC--CCCCEEEEecc
Confidence 45677775566777664 45555666666543 56999999766
No 115
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=30.01 E-value=1.2e+02 Score=23.30 Aligned_cols=12 Identities=25% Similarity=0.279 Sum_probs=9.3
Q ss_pred CCCCeEEEEeCC
Q psy13744 245 QPNDKVKVIVGE 256 (296)
Q Consensus 245 ~kGd~VkVI~Ge 256 (296)
+.||.|+|.+|.
T Consensus 61 ~~Gdvv~i~ng~ 72 (106)
T 2k75_A 61 QDSDVVRIDNAR 72 (106)
T ss_dssp CTTEEEEEEEEE
T ss_pred CCCCEEEEEeeE
Confidence 459999998874
No 116
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=29.84 E-value=1.2e+02 Score=23.57 Aligned_cols=45 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCCeEEEEe----CCCCCceEEEEEEeCCCcEEEEcCCC------ceeE-eecchh
Q psy13744 246 PNDKVKVIV----GEHKECTGVLLSVDNGEGVVKLTEED------DVKM-IDVKFL 290 (296)
Q Consensus 246 kGd~VkVI~----Ge~RG~tG~LisID~~dgiVkld~~~------d~ki-l~~~~L 290 (296)
.|.+|+|.. -+.....|.|...-.+-|+|+++.+. ..++ ..|.||
T Consensus 24 vG~~V~l~An~GRkK~~er~GvL~etYPSvFvV~ld~~~~~~~~~~~~vSYSYsDV 79 (90)
T 3fb9_A 24 EGQVVEMTLENGRKRQKNRLGKLIEVYPSLFIVEFGDVEGDKQVNVYVESFTYSDI 79 (90)
T ss_dssp TTSEEEEEECCSSSCCSCEEEEEEEECSSEEEEEESCSTTSCCSSCEEEEEEHHHH
T ss_pred CCCEEEEEecCCcccEEEEEEEEEEecCcEEEEEEcCccCcccCCceEEEEEehhh
No 117
>2egv_A UPF0088 protein AQ_165; RSME, methyltransferase, rRNA modification, PUA domain, M3U, SAM, structural genomics, NPPSFA; HET: SAM; 1.45A {Aquifex aeolicus} PDB: 2egw_A*
Probab=29.83 E-value=33 Score=30.18 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=33.3
Q ss_pred CCceeEcC-CCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 236 AHELEPVM-PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 236 q~~LEtVi-P~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
..|| .|+ =+.||+|.| +|......++|..++.+...+++.
T Consensus 21 ~~Hl-~VlRl~~Gd~v~l-dg~g~~~~a~i~~~~~~~~~~~i~ 61 (229)
T 2egv_A 21 VKHF-RVRRIEKDEEFGV-IHEGKIYVCKVRREDKREISCEIV 61 (229)
T ss_dssp HHHH-HHTTCCTTCCEEE-EETTEEEEEEEEEECSSEEEEEEE
T ss_pred HHHH-HhhcCCCCCEEEE-eCCCCEEEEEEEEecCCEEEEEEE
Confidence 3578 775 467999999 999999999999999988877763
No 118
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=29.55 E-value=50 Score=27.81 Aligned_cols=55 Identities=15% Similarity=0.148 Sum_probs=33.5
Q ss_pred ccCceEEEEecCCCCccccCCe-EEEEEec--CCeEEEEeCC------CCeeeeeeCCceeEcCCCCC
Q psy13744 189 HTTDIEVRINENARDPEFRGQI-GVIRHLG--SGVCSVYLAE------EERTLSIEAHELEPVMPQPN 247 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqk-GVVrsV~--~g~c~V~L~d------~~~vv~V~q~~LEtViP~kG 247 (296)
+..|=+|.|+. +++.|++ |.|..|. .+.+.|+-.+ .....-|+.+++..|-|+-+
T Consensus 49 IkkGD~V~Vi~----GkdKGk~~GkV~~V~~k~~~V~VEgvn~~Kp~G~~~e~PIh~SNV~lv~~~~~ 112 (145)
T 2zkr_t 49 IRKDDEVQVVR----GHYKGQQIGKVVQVYRKKYVIYIERVQREKANGTTVHVGIHPSKVVITRLKLD 112 (145)
T ss_dssp CCTTCEEEECS----STTTTCCSEEEEEEETTTTEEEETTCEEECSSCCEEECCBCGGGEEECC-CCC
T ss_pred cCCCCEEEEee----cCCCCcceeEEEEEECCCCEEEEeeeEeEcCCCceEEeccCHHHEEEEcCcCC
Confidence 45566777874 3456899 9999996 3555554332 22334456666677766543
No 119
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=29.51 E-value=52 Score=25.20 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=26.1
Q ss_pred CeEEEEEecCCeEEEEeCCCCeeeeeeCCceeEc
Q psy13744 209 QIGVIRHLGSGVCSVYLAEEERTLSIEAHELEPV 242 (296)
Q Consensus 209 qkGVVrsV~~g~c~V~L~d~~~vv~V~q~~LEtV 242 (296)
..+||.+|.+..++|.+.+. +.++|+-+.|.-.
T Consensus 37 ~~AvV~~v~~~~~~v~~~~g-~~~~l~~~~~~WA 69 (106)
T 3d0f_A 37 LAAVVLSATPGAVEAFRKNG-ETIRITGDGLKAA 69 (106)
T ss_dssp EEEEEEEEETTEEEEEETTS-CEEEECGGGGSTT
T ss_pred EEEEEEEeCCCeEEEEEcCC-CeEEEcHHHChhh
Confidence 57999999998899998654 4556888877755
No 120
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=29.00 E-value=97 Score=27.99 Aligned_cols=41 Identities=10% Similarity=0.134 Sum_probs=27.5
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecCCeEEEEeCCCCeeeee
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEERTLSI 234 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~g~c~V~L~d~~~vv~V 234 (296)
.|+-+.|.|++++. . .-+|+++.++ ..+.|.|.|-.+.+.+
T Consensus 11 klIdKrV~V~LkdG---R---el~GtLkgFD-q~MNLVL~Da~E~~~i 51 (231)
T 3pgw_B 11 QHIDYRMRCILQDG---R---IFIGTFKAFD-KHMNLILCDCDEFRKI 51 (231)
T ss_pred HhcCCeEEEEECCC---c---EEEEEEEEEc-ccccEEecCEEEEEec
Confidence 58888899988742 1 2467777774 5678888765555443
No 121
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=28.61 E-value=86 Score=29.67 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=36.9
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEecC--CeEEEE--eCCCCeeeeeeCCceeE
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLGS--GVCSVY--LAEEERTLSIEAHELEP 241 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~~--g~c~V~--L~d~~~vv~V~q~~LEt 241 (296)
|..|=.|+|++ +-|.+..|+|.+|.. +.+.|. |......+.++.++||-
T Consensus 299 f~~Gd~VrV~~----GPF~G~~G~V~evd~ek~rv~V~V~ifGR~tpVeL~~~qVek 351 (352)
T 2xhc_A 299 FKVGDMVKIIS----GPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVLHVSEVEK 351 (352)
T ss_dssp CCTTCEEEECS----STTTTCEEEEEEEETTTTEEEEEEEETTEEEEEEEEGGGEEC
T ss_pred CCCCCEEEEec----cCCCCcEEEEEEEcCCCCEEEEEEEECCCcEEEEEchHHEEE
Confidence 56777899984 678899999999963 467555 55455678888888874
No 122
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=28.58 E-value=1.3e+02 Score=25.06 Aligned_cols=32 Identities=13% Similarity=0.076 Sum_probs=23.4
Q ss_pred cccCceEEEEecCCCCccccCCeEEEEEecC-CeEEE
Q psy13744 188 WHTTDIEVRINENARDPEFRGQIGVIRHLGS-GVCSV 223 (296)
Q Consensus 188 Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~-g~c~V 223 (296)
.+..|=+|.|. .++|.|+++||.+|.| +.|-|
T Consensus 14 fve~GrVV~i~----~Gr~aGk~avIV~iiD~~rVLV 46 (138)
T 3izc_N 14 LVEVGRVVLIK----KGQSAGKLAAIVEIIDQKKVLI 46 (138)
T ss_dssp CSSTTEEEECC----SCSSSCCEEEEEEECSSSEEEE
T ss_pred hcccCeEEEEe----eCCCCCCEEEEEEEecCCEEEE
Confidence 35566677554 3578899999999975 76666
No 123
>2zae_A Ribonuclease P protein component 1; ribonuclease P protein subunits, hetero dimer, hydrolase, TR processing; 2.21A {Pyrococcus horikoshii} PDB: 2ki7_A
Probab=28.41 E-value=1.6e+02 Score=24.09 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=25.4
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecCCeEEEEe
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYL 225 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~g~c~V~L 225 (296)
+|+ |..|+|+++. +..|.|.+|+|..=...+..|.-
T Consensus 47 Dl~--Ga~v~Vv~S~-~pslVGi~GiVV~ETknTf~I~t 82 (127)
T 2zae_A 47 ELI--GLRVRIVGST-HPAFVGIEGYVIDETRNMLVIAG 82 (127)
T ss_dssp CCT--TCEEEEEEES-SGGGTTCEEEEEEEETTEEEEES
T ss_pred Hhc--CCEEEEEEcC-CCCccCcEEEEEEcccceEEEEc
Confidence 566 7777777533 56799999999886666665543
No 124
>1v76_A RNAse P protein PH1771P; RNA binding protein, archaeal RNAse P protein; 2.00A {Pyrococcus horikoshii} SCOP: b.137.1.1
Probab=28.18 E-value=1.9e+02 Score=22.34 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=25.3
Q ss_pred CcccCceEEEEecCCCCccccCCeEEEEEecCCeEEEEe
Q psy13744 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYL 225 (296)
Q Consensus 187 ~Wl~~dI~VkI~~~~~d~~yygqkGVVrsV~~g~c~V~L 225 (296)
+|+ +..|+|.++ .+..|.|.+|+|..=...+..|.-
T Consensus 16 dl~--G~~v~Vv~S-~~pslVGi~GiVV~ET~ntf~I~t 51 (96)
T 1v76_A 16 ELI--GLRVRIVGS-THPAFVGIEGYVIDETRNMLVIAG 51 (96)
T ss_dssp CCT--TCEEEEEEE-SSGGGTTCEEEEEEECSSEEEEES
T ss_pred hhc--CCEEEEEEc-CCCCccCcEEEEEEeccceEEEEc
Confidence 566 777777753 346799999999886656655543
No 125
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=27.83 E-value=1.2e+02 Score=25.23 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=33.2
Q ss_pred cCCCCCCeEEEEeC-CCCCceEEEEEEeCCCcEEEE-cCCCceeEeecchhhcc
Q psy13744 242 VMPQPNDKVKVIVG-EHKECTGVLLSVDNGEGVVKL-TEEDDVKMIDVKFLCKY 293 (296)
Q Consensus 242 ViP~kGd~VkVI~G-e~RG~tG~LisID~~dgiVkl-d~~~d~kil~~~~L~Kl 293 (296)
..|++|+.+.+..- +..=.+|++++|+.+...|.+ |-+. ...+++.+|..|
T Consensus 50 ~~~~~g~~c~a~~~~d~~wyRa~V~~v~~~~~~V~~vDyG~-~~~v~~~~l~~l 102 (218)
T 2wac_A 50 YTPKRGDLVAAQFTLDNQWYRAKVERVQGSNATVLYIDYGN-KETLPTNRLAAL 102 (218)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEEETTEEEEEETTTCC-EEEEEGGGEEEC
T ss_pred ccCCcCCEEEEEECCCCeEEEEEEEEecCCeEEEEEEecCC-eEEEchHHcccC
Confidence 35889999998862 233478999999876667774 4333 444555555443
No 126
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=27.32 E-value=2.3e+02 Score=25.67 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=36.9
Q ss_pred eEEEEEecCCeEEEEeCC-CCeeeeeeCCceeE-------cCCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEEc
Q psy13744 210 IGVIRHLGSGVCSVYLAE-EERTLSIEAHELEP-------VMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277 (296)
Q Consensus 210 kGVVrsV~~g~c~V~L~d-~~~vv~V~q~~LEt-------ViP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkld 277 (296)
.|+|++|.+.-|-|.|.+ .+..--|.-++|.. -.-+.||+|+| +++++|.+++-+.|.
T Consensus 16 ~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~~~v~~~~~~~kvGd~V~v----------kVi~vD~~~~~I~LS 81 (275)
T 3aev_A 16 VATVKRIHNYGAFLELDEYPGKEAFMHISEVASTWVRNIRDYLKEGQKVVA----------KVIRVDPRKGHIDLS 81 (275)
T ss_dssp EEEEEEEETTEEEEEETTSTTCEEEEEGGGSCSSCCSCGGGTCCTTCEEEE----------EEEEEETTTTEEEEE
T ss_pred EEEEEEEECcEEEEEECCCCCeEEEEEHHHcCcccccCHHhccCCCCEEEE----------EEEEEECCCCEEEEE
Confidence 578888888777788864 34334455555531 12345666655 578889888877663
No 127
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=26.77 E-value=82 Score=25.69 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=19.0
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEec
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLG 217 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~ 217 (296)
+..|=+|.|+. +++.|++|.|..|.
T Consensus 46 IkkGD~V~Vi~----GkdKGk~GkV~~V~ 70 (121)
T 3j21_U 46 VRVGDKVRIMR----GDYKGHEGKVVEVD 70 (121)
T ss_dssp CCSSSEEEECS----SSCSSEEEEEEEEE
T ss_pred cccCCEEEEee----cCCCCcEeEEEEEE
Confidence 55666788874 34579999999996
No 128
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=26.38 E-value=1.4e+02 Score=30.27 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=21.0
Q ss_pred eEEEEEecCCeEEEEeCCCCeeeeeeCCce
Q psy13744 210 IGVIRHLGSGVCSVYLAEEERTLSIEAHEL 239 (296)
Q Consensus 210 kGVVrsV~~g~c~V~L~d~~~vv~V~q~~L 239 (296)
.|+|.+|.+.-+-|.|.+.+..-.|..++|
T Consensus 565 ~g~V~~V~~~G~fV~L~~~gieGlVhis~l 594 (644)
T 2id0_A 565 AAEIVDISRGGMRVRLVDNGAIAFIPAPFL 594 (644)
T ss_dssp EEEEEEEETTEEEEEETTTCCEEEEEGGGT
T ss_pred EEEEEEEeCCceEEEEcCCcEEEEEEchhc
Confidence 689999988767788876554444555444
No 129
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=24.96 E-value=26 Score=34.23 Aligned_cols=44 Identities=18% Similarity=0.231 Sum_probs=29.4
Q ss_pred eeEcCCCCCCeEEEEeCCC---CCceEEEEE-Ee---CCCcEEEEcCCCce
Q psy13744 239 LEPVMPQPNDKVKVIVGEH---KECTGVLLS-VD---NGEGVVKLTEEDDV 282 (296)
Q Consensus 239 LEtViP~kGd~VkVI~Ge~---RG~tG~Lis-ID---~~dgiVkld~~~d~ 282 (296)
|+..--..||+|+|..... +-..|.|+- -+ .+--+||||++.++
T Consensus 7 ~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~~gyn~ 57 (438)
T 1zq1_A 7 LKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLENGYNI 57 (438)
T ss_dssp HHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETTSCEE
T ss_pred HHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEccCCcee
Confidence 3333445699999988653 567888884 33 34468899988543
No 130
>3pqi_A Gene product 138; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, viral protein; 2.64A {Bacteriophage PHI92}
Probab=24.85 E-value=1.6e+02 Score=26.59 Aligned_cols=55 Identities=5% Similarity=-0.074 Sum_probs=31.1
Q ss_pred CeEEEEEec--CCeEEEEeCCCC-----------eeeeeeCCce------eEcCCCCCCeEEEEeCCCCCceEEE
Q psy13744 209 QIGVIRHLG--SGVCSVYLAEEE-----------RTLSIEAHEL------EPVMPQPNDKVKVIVGEHKECTGVL 264 (296)
Q Consensus 209 qkGVVrsV~--~g~c~V~L~d~~-----------~vv~V~q~~L------EtViP~kGd~VkVI~Ge~RG~tG~L 264 (296)
.-|+|.+|. ..+|+|+..-.. .++.|+--.+ -+..|++||.|+|+.- +|...+.+
T Consensus 27 lPg~VvsvD~~~~tvtVqP~i~~~~~dG~~i~~p~I~dVPV~~~~gG~~~i~~P~k~GD~vlvvFs-dRdId~~~ 100 (247)
T 3pqi_A 27 LPVRVIGVDYGSKTVTLESIVKNTRSTEDEIDYPTFHDVPFMVNGGGTGRISFPIKAGDIGVVVFS-ERDPSNAF 100 (247)
T ss_dssp EEEEEEEEETTTTEEEEEESSCCC-----CCSSCEEEEEEBCCEEETTEEECCCCCTTCEEEEEEC---------
T ss_pred ccEEEEEEeCCCCEEEEEECceecccCCceeccCccccccEEEecCCCEEEEcCCCCCCEEEEEEe-cCCHHHHH
Confidence 578899987 578999964322 1233333222 4556799999999986 44444433
No 131
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=24.56 E-value=3.1e+02 Score=22.98 Aligned_cols=57 Identities=21% Similarity=0.232 Sum_probs=33.1
Q ss_pred eEEEEEecCCeEEEEeCC-CCeeeeeeCCceeE--c-----CCCCCCeEEEEeCCCCCceEEEEEEeCCCcEEEE
Q psy13744 210 IGVIRHLGSGVCSVYLAE-EERTLSIEAHELEP--V-----MPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276 (296)
Q Consensus 210 kGVVrsV~~g~c~V~L~d-~~~vv~V~q~~LEt--V-----iP~kGd~VkVI~Ge~RG~tG~LisID~~dgiVkl 276 (296)
+|+|++|.+.-|-|.|.+ .+..=-|.-++|.- + .=+.||+|+| ++++||.+.+-|.|
T Consensus 20 ~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~~~v~~~~~~~~vGd~V~v----------kVl~vd~~~~~I~L 84 (175)
T 2a19_A 20 MVNVQQIAEMGAYVKLLEYDNIEGMILLSELSRRRIRSIQKLIRVGKNDVA----------VVLRVDKEKGYIDL 84 (175)
T ss_dssp EEEEEEEETTEEEEEETTTTTCEEEEECC--------CCCCCCCTTSEEEE----------EEEEEETTTTEEEE
T ss_pred EEEEEEEecceEEEEEcCCCCcEEEEEHHHcCCcccCCHHHcCCCCCEEEE----------EEEEEECCCCeEEE
Confidence 578888888778888852 23333355555531 1 1223555554 57888888887765
No 132
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=23.86 E-value=64 Score=25.98 Aligned_cols=32 Identities=16% Similarity=0.047 Sum_probs=22.4
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEec--CCeEEEE
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLG--SGVCSVY 224 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~--~g~c~V~ 224 (296)
+..|=+|.|+. +++.|++|.|.+|. .+.+.|+
T Consensus 16 IkkGD~V~Vi~----GkdKGk~GkV~~V~~~~~~V~VE 49 (115)
T 2zjr_R 16 FKKGDTVIVLS----GKHKGQTGKVLLALPRDQKVVVE 49 (115)
T ss_dssp SCTTSEEECCS----SSSTTCEEEEEEEETTTTEEEES
T ss_pred ccCCCEEEEeE----cCCCCcEEEEEEEECCCCEEEEe
Confidence 44555777774 34579999999996 3566555
No 133
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=23.77 E-value=85 Score=23.80 Aligned_cols=50 Identities=14% Similarity=0.059 Sum_probs=28.6
Q ss_pred ccCceEEEEecCCCCccccCCeEEEEEecC-CeEEEEeCCC-C-eeeeeeCCceeEc
Q psy13744 189 HTTDIEVRINENARDPEFRGQIGVIRHLGS-GVCSVYLAEE-E-RTLSIEAHELEPV 242 (296)
Q Consensus 189 l~~dI~VkI~~~~~d~~yygqkGVVrsV~~-g~c~V~L~d~-~-~vv~V~q~~LEtV 242 (296)
+..|=+|.+. .++|.|+++||.++.| ++|-|.=++. + .--.+...||+..
T Consensus 4 ~~~Grvv~~~----~Gr~~Gk~~vIv~iiD~~~vlV~g~~~~~v~rk~kn~khl~lt 56 (83)
T 3j21_5 4 IDVGRIAVVI----AGRRAGQKVVVVDIIDKNFVLVTGAGLNKVKRRRMNIKHIEPL 56 (83)
T ss_dssp CCTTEEEECS----SSSSSCCCEEEEEECSSSCEEEECCTTTTCCCEEESCSSCEEE
T ss_pred cccCEEEEEe----ecCCCCCEEEEEEEcCCCEEEEECCccCccCCeEechHHEEEe
Confidence 3455566554 2567899999999864 6665553321 1 1224455555543
No 134
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=23.68 E-value=1.8e+02 Score=22.39 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=14.4
Q ss_pred CeEEEEEecCCeEEEEeC
Q psy13744 209 QIGVIRHLGSGVCSVYLA 226 (296)
Q Consensus 209 qkGVVrsV~~g~c~V~L~ 226 (296)
-+|+|++|.+.-|-|.|.
T Consensus 25 ~~G~V~~v~~fG~fV~l~ 42 (119)
T 1wi5_A 25 LTGTVSSLEDHGYLVDIG 42 (119)
T ss_dssp EEEEEEEECSSEEEEECC
T ss_pred EEEEEEEEeCceEEEEEC
Confidence 368899998877778886
No 135
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=23.50 E-value=27 Score=34.15 Aligned_cols=43 Identities=26% Similarity=0.290 Sum_probs=29.3
Q ss_pred eeEcCCCCCCeEEEEeCCCCCceEEEEE-Ee---CCCcEEEEcCCCce
Q psy13744 239 LEPVMPQPNDKVKVIVGEHKECTGVLLS-VD---NGEGVVKLTEEDDV 282 (296)
Q Consensus 239 LEtViP~kGd~VkVI~Ge~RG~tG~Lis-ID---~~dgiVkld~~~d~ 282 (296)
|+..--..||+|+|.... +-..|.|+- -+ .+--+||||++.++
T Consensus 11 ~~~~~~~~gd~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~kl~~gyn~ 57 (435)
T 2d6f_A 11 LESASIDVGDMVLVEKPD-VTYEGMVLDRADDADDRHIVLKLENGYNI 57 (435)
T ss_dssp HHTTTCCTTCEEEEECSS-CEEEEEECCCCTTSCSSEEEEECTTSCEE
T ss_pred HHHcCCCCCCEEEEEECC-eEEEEEEecCcccCCCCeEEEEccCceee
Confidence 333344569999998875 778888884 33 34457889887543
No 136
>2k14_A YUAF protein; NFED-like protein, cellular stress, unknown function; NMR {Bacillus subtilis}
Probab=23.14 E-value=1.7e+02 Score=21.40 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=29.2
Q ss_pred cccCCeEEEEEec--CCeEEEEeCCC-Ce-eeeeeCCceeEcCCCCCCeEEEEe
Q psy13744 205 EFRGQIGVIRHLG--SGVCSVYLAEE-ER-TLSIEAHELEPVMPQPNDKVKVIV 254 (296)
Q Consensus 205 ~yygqkGVVrsV~--~g~c~V~L~d~-~~-vv~V~q~~LEtViP~kGd~VkVI~ 254 (296)
.|.|++|+|.+-. ++...|.+... +. .-++-...=+. | .+|++|+|+.
T Consensus 19 ~liG~~g~V~~~i~~~~~G~V~i~g~gg~~~W~A~s~~~~~-i-~~G~~V~Vv~ 70 (84)
T 2k14_A 19 DLRGRLGKVITAVPVDGFGEVVIEGIGGTISKSAVSFDNQQ-I-SYGTTVLVVD 70 (84)
T ss_dssp HGGGSEEEEEECBCTTCEEEEEESCTTSCCCEEEEETTSCC-B-CSSCEEEEEE
T ss_pred hcCCCEEEEEEEeCCCCcEEEEEeeECccEEEEEEeCCCCc-c-CCCCEEEEEE
Confidence 5789999888754 46678888751 12 33333211122 3 4599999986
No 137
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=22.64 E-value=68 Score=26.62 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=28.6
Q ss_pred CCceEEEEEEeCCCcEEEEcCCCceeEeecchhhcc
Q psy13744 258 KECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFLCKY 293 (296)
Q Consensus 258 RG~tG~LisID~~dgiVkld~~~d~kil~~~~L~Kl 293 (296)
.|.-++|+..|++-.+|||-+++ +|.|+.+..|-+
T Consensus 98 AGt~a~ii~ke~~~~~vrLPSGe-~r~v~~~c~AtI 132 (137)
T 1rl2_A 98 AGTSAQVLGKEGKYVIVRLASGE-VRMILGKCRATV 132 (137)
T ss_dssp SSCCEEEEEEETTEEEEECTTSC-EEEEETTSEEEE
T ss_pred CCCeEEEEEEcCCEEEEECCCCC-eEEECCcCcEEE
Confidence 57889999999999999998876 788887766543
No 138
>3cp0_A Membrane protein implicated in regulation of MEMB protease activity; beta barrel, structural genomics, PSI-2; 1.65A {Corynebacterium glutamicum atcc 13032}
Probab=22.05 E-value=1.6e+02 Score=21.28 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=29.4
Q ss_pred ccccCCeEEEEEec-CCeEEEEeCCCCeeeeeeCCceeEcCCCCCCeEEEEe
Q psy13744 204 PEFRGQIGVIRHLG-SGVCSVYLAEEERTLSIEAHELEPVMPQPNDKVKVIV 254 (296)
Q Consensus 204 ~~yygqkGVVrsV~-~g~c~V~L~d~~~vv~V~q~~LEtViP~kGd~VkVI~ 254 (296)
..+.|++|+|.+-. ++...|++. ++.-++..+.=+..+ .+|++|+|+.
T Consensus 22 ~~liG~~~~v~~~i~~~~G~V~~~--G~~W~A~s~~~~~~i-~~G~~V~Vv~ 70 (82)
T 3cp0_A 22 RALVGHRAEVLEDVGATSGQVRLD--GSIWSARSMDPTHTF-AEGEIVSVID 70 (82)
T ss_dssp GGGTTCEEEEEECBCSSCCEEEET--TEEEEEEESSTTCCB-CTTCEEEEEE
T ss_pred hhcCCCEEEEEEEeCCCCEEEEEC--CEEEEEEECCCCCcc-CCCCEEEEEE
Confidence 36889999998864 445678886 334444321100112 4599999986
No 139
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.72 E-value=3e+02 Score=21.80 Aligned_cols=49 Identities=16% Similarity=0.029 Sum_probs=31.2
Q ss_pred CeEEEEEec-CCeEEEEeCCCC-eeeeeeCCceeEcCCCCCCeEEEEeCCC
Q psy13744 209 QIGVIRHLG-SGVCSVYLAEEE-RTLSIEAHELEPVMPQPNDKVKVIVGEH 257 (296)
Q Consensus 209 qkGVVrsV~-~g~c~V~L~d~~-~vv~V~q~~LEtViP~kGd~VkVI~Ge~ 257 (296)
..|+|.+.. ++.+.|++.+.. ....|+...=-.|.=..||.|+|-.=+|
T Consensus 17 ~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~y 67 (111)
T 2dgy_A 17 QIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEE 67 (111)
T ss_dssp EEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSS
T ss_pred EEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEeccc
Confidence 467788876 588999998753 4455555544444455677777754444
No 140
>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B
Probab=21.71 E-value=69 Score=26.58 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=27.0
Q ss_pred CCceEEEEEEeCCCcEEEEcCCCceeEeecchhh
Q psy13744 258 KECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFLC 291 (296)
Q Consensus 258 RG~tG~LisID~~dgiVkld~~~d~kil~~~~L~ 291 (296)
.|..++|+..|++-.+|||-+++ +|.|+.+..|
T Consensus 85 AGt~a~ii~ke~~~~~vrLPSGe-~r~v~~~c~A 117 (136)
T 2ftc_B 85 AGTCGVLLRKVNGTAIIQLPSKR-QMQVLETCVA 117 (136)
T ss_pred CCCeEEEEEecCCEEEEECCCCC-eEEECcCCcE
Confidence 57889999999999999998876 7777766655
No 141
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=21.35 E-value=34 Score=24.83 Aligned_cols=46 Identities=20% Similarity=0.136 Sum_probs=31.0
Q ss_pred CeEEEEEecC-CeEEEEeCCCC-eeeeeeCCce-eEcCCCCCCeEEEEe
Q psy13744 209 QIGVIRHLGS-GVCSVYLAEEE-RTLSIEAHEL-EPVMPQPNDKVKVIV 254 (296)
Q Consensus 209 qkGVVrsV~~-g~c~V~L~d~~-~vv~V~q~~L-EtViP~kGd~VkVI~ 254 (296)
.+|+|.+..+ +.+.|++.+.. ....+....- .-+.+..||+|.|-.
T Consensus 9 ~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~ 57 (71)
T 1hr0_W 9 TEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEI 57 (71)
T ss_dssp CEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEEC
T ss_pred EEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEE
Confidence 3678888775 88889886542 2344444443 367788999998854
No 142
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=21.26 E-value=2.5e+02 Score=23.43 Aligned_cols=59 Identities=10% Similarity=0.053 Sum_probs=41.7
Q ss_pred CeEEEEEec-CCeEEEEeCCCC-eeeeeeCCceeEcCCCCCCeEEEEeCCCCCceEEEEEE
Q psy13744 209 QIGVIRHLG-SGVCSVYLAEEE-RTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSV 267 (296)
Q Consensus 209 qkGVVrsV~-~g~c~V~L~d~~-~vv~V~q~~LEtViP~kGd~VkVI~Ge~RG~tG~LisI 267 (296)
..|+|.++. ++.+.|.|.+.. .+..|....=-.|.=..||.|+|-.=+|--..|.++-+
T Consensus 33 ~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~VlVe~~~yd~~KG~Ii~r 93 (143)
T 1d7q_A 33 EYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILK 93 (143)
T ss_dssp EEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEEEEECSSSSSSCCEEEEE
T ss_pred EEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEEEEeeccCCCCeEEEEEE
Confidence 467888886 588999998753 45556665555555667999998766665566777666
No 143
>2jz2_A SSL0352 protein; SH3-like, synechocystis SP. PCC 6803, targe PSI, protein structure initiative, northeast structural GEN consortium, NESG; NMR {Synechocystis SP} PDB: 3c4s_A
Probab=20.39 E-value=1.9e+02 Score=21.33 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=35.0
Q ss_pred CCCeEEEEeCC--CCCceEEEEEEeCCCcEEEEcCC-Cc-eeEeecchhhcc
Q psy13744 246 PNDKVKVIVGE--HKECTGVLLSVDNGEGVVKLTEE-DD-VKMIDVKFLCKY 293 (296)
Q Consensus 246 kGd~VkVI~Ge--~RG~tG~LisID~~dgiVkld~~-~d-~kil~~~~L~Kl 293 (296)
.|-.|+|++-. |.|.+|.+--|-...+-|-++.+ .| +.-+.+++|-..
T Consensus 4 PG~~V~V~np~~~Yy~y~G~VQRvsdgkaaVLFEGGnWDKLVTf~L~eLe~~ 55 (66)
T 2jz2_A 4 PGATVRVTNVDDTYYRFEGLVQRVSDGKAAVLFENGNWDKLVTFRLSELEAV 55 (66)
T ss_dssp TTCEEEECCTTSTTBTCEEEEEEEETTEEEEEEESSSCEEEEEEESTTEEEC
T ss_pred CCCEEEEeCCCCcccceeEEEEEecCCcEEEEecCCCceeEEEEEhhHceec
Confidence 47789998855 79999999999777666657665 33 444777777654
Done!