Your job contains 1 sequence.
>psy13744
MTGGFMSPRISSPMHPSGGRGGRGGGRGGHHGGNVRRDRELIGKTIKITGGPYKVGSRTP
GGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYS
PLQASPSPSGYQSHSGVSSGSSSYLGATPSPSSEAAPYGTPSPLSYSSRQASPFTPGTGL
DQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEERTLSIEAHELE
PVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFLCKYKPE
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13744
(296 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0040273 - symbol:Spt5 "Spt5" species:7227 "Drosoph... 353 1.1e-43 2
ZFIN|ZDB-GENE-001207-1 - symbol:supt5h "suppressor of Ty ... 320 1.6e-35 2
UNIPROTKB|Q5R405 - symbol:SUPT5H "Transcription elongatio... 352 6.7e-31 1
UNIPROTKB|F2Z3T6 - symbol:F2Z3T6 "Uncharacterized protein... 350 7.4e-31 1
MGI|MGI:1202400 - symbol:Supt5 "suppressor of Ty 5" speci... 350 1.1e-30 1
UNIPROTKB|E9PTB2 - symbol:E9PTB2 "Uncharacterized protein... 350 1.1e-30 1
UNIPROTKB|I3LA48 - symbol:SUPT5H "Uncharacterized protein... 350 1.1e-30 1
UNIPROTKB|E1BC98 - symbol:SUPT5H "Uncharacterized protein... 350 1.1e-30 1
UNIPROTKB|E2RLS8 - symbol:SUPT5H "Uncharacterized protein... 350 1.1e-30 1
UNIPROTKB|O00267 - symbol:SUPT5H "Transcription elongatio... 350 1.1e-30 1
UNIPROTKB|I3LMJ9 - symbol:SUPT5H "Uncharacterized protein... 350 1.1e-30 1
UNIPROTKB|H9L0H1 - symbol:SUPT5H "Transcription elongatio... 344 3.9e-30 1
UNIPROTKB|Q5ZI08 - symbol:SUPT5H "Transcription elongatio... 344 4.8e-30 1
TAIR|locus:2137420 - symbol:AT4G08360 "AT4G08360" species... 156 3.3e-11 1
WB|WBGene00005015 - symbol:spt-5 species:6239 "Caenorhabd... 160 1.7e-10 2
UNIPROTKB|Q21338 - symbol:spt-5 "Transcription elongation... 160 1.7e-10 2
TAIR|locus:2040954 - symbol:AT2G34210 species:3702 "Arabi... 165 6.3e-10 2
>FB|FBgn0040273 [details] [associations]
symbol:Spt5 "Spt5" species:7227 "Drosophila melanogaster"
[GO:0006351 "transcription, DNA-dependent" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0005705 "polytene chromosome
interband" evidence=IDA] [GO:0000176 "nuclear exosome (RNase
complex)" evidence=IDA] [GO:0008023 "transcription elongation
factor complex" evidence=IPI] [GO:0035101 "FACT complex"
evidence=IPI] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 EMBL:AE013599 GO:GO:0007095 GO:GO:0007052
GO:GO:0045944 GO:GO:0000122 GO:GO:0046982 GO:GO:0006368
GO:GO:0032968 GO:GO:0005703 GO:GO:0005705 GO:GO:0032786
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
GO:GO:0032044 GO:GO:0032785 eggNOG:COG5164 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 GeneTree:ENSGT00440000037640
EMBL:AF222864 EMBL:AY069140 EMBL:BT001668 EMBL:BT023840
RefSeq:NP_652610.1 UniGene:Dm.2263 ProteinModelPortal:Q9V460
SMR:Q9V460 DIP:DIP-59538N IntAct:Q9V460 MINT:MINT-322311
STRING:Q9V460 PaxDb:Q9V460 PRIDE:Q9V460 EnsemblMetazoa:FBtr0086531
GeneID:53442 KEGG:dme:Dmel_CG7626 UCSC:CG7626-RA CTD:53442
FlyBase:FBgn0040273 InParanoid:Q9V460 OMA:VGQTGII OrthoDB:EOG4X0K78
PhylomeDB:Q9V460 GenomeRNAi:53442 NextBio:841174 Bgee:Q9V460
GermOnline:CG7626 Uniprot:Q9V460
Length = 1078
Score = 353 (129.3 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 98/257 (38%), Positives = 137/257 (53%)
Query: 57 SRTPGGGATPLHDGSRTP--GPWDPSS--TPARSIHNDAYPMDD-SFNNSY-PHTPGTMY 110
+RTP G TP HDGS TP G WDP++ TPAR+ D Y +++ S + Y P TPG Y
Sbjct: 839 TRTPYGTMTPSHDGSMTPRHGAWDPTANTTPARNNDFD-YSLEEPSPSPGYNPSTPG--Y 895
Query: 111 GSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLGATPSPSSEAAPY-----GTPSPLS 165
+S+ +P Y PSPS +PY TPSP +
Sbjct: 896 QMTSQFAPQTP-------------GTLYGSDRSYSPFNPSPSPAPSPYPVGYMNTPSPST 942
Query: 166 YSSRQA-----SPF---TPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLG 217
YS SP+ TPG LD +W TTDIEVRI+ + D + GQ G+IR +
Sbjct: 943 YSPNTPGGIPQSPYNPQTPGASLDS-SMGDWCTTDIEVRIHTHD-DTDLVGQTGIIRTVS 1000
Query: 218 SGVCSVYLAEEERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLT 277
+GVCSV+L +E+R++SI + L PV+P D+ K+I G+ +E G +LS D V ++
Sbjct: 1001 NGVCSVFLRQEDRSVSIVSEHLAPVLPCNGDEFKIIYGDDRESVGRVLSKDGDVFVCRIN 1060
Query: 278 EEDDVKMIDVKFLCKYK 294
EE +K++ + FLCK K
Sbjct: 1061 EE--IKLLPINFLCKMK 1075
Score = 148 (57.2 bits), Expect = 1.1e-43, Sum P(2) = 1.1e-43
Identities = 35/75 (46%), Positives = 39/75 (52%)
Query: 4 GFMSPRISSPMHPSXXXXXXXXXXXXXXXXNVRRDRELIGKTIKITGGPYK--VG---SR 58
GFMSPRI SPMHPS V RDRE++GKTIKI+GGPYK VG
Sbjct: 704 GFMSPRIQSPMHPSGGRGARGGARGGRGGFRVTRDREILGKTIKISGGPYKGAVGIVKDA 763
Query: 59 TPGGGATPLHDGSRT 73
T LH +T
Sbjct: 764 TESTARVELHTSCQT 778
>ZFIN|ZDB-GENE-001207-1 [details] [associations]
symbol:supt5h "suppressor of Ty 5 homolog (S.
cerevisiae)" species:7955 "Danio rerio" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA;IMP]
[GO:0001764 "neuron migration" evidence=IMP] [GO:0032044 "DSIF
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030097 "hemopoiesis" evidence=IMP] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0034244 "negative regulation of transcription
elongation from RNA polymerase II promoter" evidence=IMP]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 Pfam:PF00467
ZFIN:ZDB-GENE-001207-1 GO:GO:0001764 GO:GO:0030097 GO:GO:0006368
GO:GO:0034244 GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250 GO:GO:0032044
HOGENOM:HOG000038564 InterPro:IPR022581 InterPro:IPR005100
Pfam:PF03439 Pfam:PF11942 HOVERGEN:HBG079775 EMBL:AF288409
EMBL:BC057529 IPI:IPI00485845 IPI:IPI00510595 UniGene:Dr.33072
ProteinModelPortal:Q9DDT5 SMR:Q9DDT5 STRING:Q9DDT5 PRIDE:Q9DDT5
InParanoid:Q9DDT5 OrthoDB:EOG42V8FG ArrayExpress:Q9DDT5
Uniprot:Q9DDT5
Length = 1084
Score = 320 (117.7 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 85/249 (34%), Positives = 131/249 (52%)
Query: 57 SRTPGG-GATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSE 115
S +P G G TP +TPG + S +N P + N+ ++P Y + S
Sbjct: 843 SPSPQGYGGTP---NPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSP---YAAPSP 896
Query: 116 HTSYSPLQASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA 171
SY P SP + TPSP + +A+P +PSP+ YS
Sbjct: 897 QGSYQP-SPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTP 953
Query: 172 --------SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSV 223
+P TPG+ +DQ + +W TTDI VR+ + D Q G+IR + G+CSV
Sbjct: 954 GAPSPGGYNPHTPGSNIDQ-ASNDWVTTDIMVRVKDTFLDGGVINQTGIIRSVTGGMCSV 1012
Query: 224 YLAEEERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVK 283
+L + E+ +SI + LEPV P N+KVKVI+GE +E TGVLLS+D +G+V++ ++ +K
Sbjct: 1013 FLQDTEKVVSISSEHLEPVTPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMELDEQLK 1072
Query: 284 MIDVKFLCK 292
+++++FL K
Sbjct: 1073 ILNLRFLGK 1081
Score = 136 (52.9 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 47/145 (32%), Positives = 58/145 (40%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTPGP---WDPSS--TPARSIHNDAYPMDDSFNNSYPHT 105
P GSRTP G TPLHDGSRTPG WDP++ TP+R + DD + S
Sbjct: 790 PLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRPDDEYEFAYDDEPSPSPQGY 849
Query: 106 PGTMYGSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLG-ATPSPSSEAAPYGTPSPL 164
GT + + Q +P Y A PSP P +PSP
Sbjct: 850 GGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTDQYSPYAAPSPQGSYQP--SPSPQ 907
Query: 165 SYSSRQASPF---TPGTGLDQYPTP 186
SY SP + +PTP
Sbjct: 908 SYHQVAPSPVGYQNTHSPASYHPTP 932
Score = 104 (41.7 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 26/58 (44%), Positives = 31/58 (53%)
Query: 3 GGF--MSPRISSPMHPSXXXX----XXXXXXXXXXXXNVRRDRELIGKTIKITGGPYK 54
GGF MSPRISSPMHP RRD +LIG+T++I+ GPYK
Sbjct: 659 GGFAPMSPRISSPMHPGGGGQPQRGGGGGGGGGMGRGRGRRDNDLIGQTVRISQGPYK 716
>UNIPROTKB|Q5R405 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9601 "Pongo abelii" [GO:0032044 "DSIF complex"
evidence=ISS] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0006351 GO:GO:0032968 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 GO:GO:0032044
KO:K15172 InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439
Pfam:PF11942 CTD:6829 HOVERGEN:HBG079775 EMBL:CR861455
RefSeq:NP_001127053.1 UniGene:Pab.890 ProteinModelPortal:Q5R405
SMR:Q5R405 PRIDE:Q5R405 GeneID:100174081 KEGG:pon:100174081
InParanoid:Q5R405 Uniprot:Q5R405
Length = 1083
Score = 352 (129.0 bits), Expect = 6.7e-31, P = 6.7e-31
Identities = 86/242 (35%), Positives = 132/242 (54%)
Query: 63 GATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYSPL 122
G TP +TPG DPSS +N P + N+ +P Y + S SY P
Sbjct: 848 GGTP---NPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSP---YAAPSPQGSYQP- 900
Query: 123 QASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA------- 171
SP + TPSP + +A+P +PSP+ YS
Sbjct: 901 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSPGG 958
Query: 172 -SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEER 230
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL + E+
Sbjct: 959 YNPHTPGSGIEQNSS-DWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEK 1017
Query: 231 TLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFL 290
+SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G+V++ ++ +K+++++FL
Sbjct: 1018 VVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDPDEQLKILNLRFL 1077
Query: 291 CK 292
K
Sbjct: 1078 GK 1079
Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 48/147 (32%), Positives = 63/147 (42%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTP---GPWDPSS--TPARSIHNDAYPMDDSFNNSYPHT 105
P + GSRTP G TPLHDGSRTP G WDP++ TP+R+ Y DD S
Sbjct: 788 PLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAY 847
Query: 106 PGTMYGSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLG-ATPSPSSEAAPYGTPSPL 164
GT + + S Q +P + A PSP P +PSP
Sbjct: 848 GGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP--SPSPQ 905
Query: 165 SYSSRQASPFTPGTGLDQYPTPEWHTT 191
SY Q +P +P + + +H T
Sbjct: 906 SY--HQVAP-SPAGYQNTHSPASYHPT 929
Score = 120 (47.3 bits), Expect = 0.00039, P = 0.00039
Identities = 47/141 (33%), Positives = 60/141 (42%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXXXXXXXXNV-----RRDRELIGKTIKITGGPYK- 54
GGF MSPRISSPMHPS + RRD ELIG+T++I+ GPYK
Sbjct: 656 GGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKG 715
Query: 55 -VG---SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT 108
+G T LH +T S + + ++Y TP G+
Sbjct: 716 YIGVVKDATESTARVELHSTCQT------ISVDRQRLTTVGSRRPGGMTSTYGRTPMYGS 769
Query: 109 ---MYGSSSEHTSY---SPLQ 123
MYGS S Y +PLQ
Sbjct: 770 QTPMYGSGSRTPMYGSQTPLQ 790
>UNIPROTKB|F2Z3T6 [details] [associations]
symbol:F2Z3T6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0006357 "regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM01104 Pfam:PF00467 GO:GO:0006357 InterPro:IPR008991
SUPFAM:SSF50104 GO:GO:0032784 InterPro:IPR005824 SMART:SM00739
InterPro:IPR005100 Pfam:PF03439 GeneTree:ENSGT00440000037640
IPI:IPI00781937 ProteinModelPortal:F2Z3T6 PRIDE:F2Z3T6
Ensembl:ENSRNOT00000057470 Uniprot:F2Z3T6
Length = 888
Score = 350 (128.3 bits), Expect = 7.4e-31, P = 7.4e-31
Identities = 87/243 (35%), Positives = 132/243 (54%)
Query: 63 GATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYSPL 122
G TP +TPG DPSS +N P + N+ +P Y + S SY P
Sbjct: 652 GGTP---NPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSP---YAAPSPQGSYQP- 704
Query: 123 QASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA------- 171
SP + TPSP + +A+P +PSP+ YS
Sbjct: 705 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSPGG 762
Query: 172 -SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEER 230
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL + E+
Sbjct: 763 YNPHTPGSGIEQNSS-DWVTTDIQVKVRDTYLDTQIVGQTGVIRSVTGGMCSVYLKDSEK 821
Query: 231 TLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDD-VKMIDVKF 289
+SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G++++ ED +K+++++F
Sbjct: 822 VVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLEDQQIKILNLRF 881
Query: 290 LCK 292
L K
Sbjct: 882 LGK 884
Score = 145 (56.1 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 48/147 (32%), Positives = 63/147 (42%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTP---GPWDPSS--TPARSIHNDAYPMDDSFNNSYPHT 105
P + GSRTP G TPLHDGSRTP G WDP++ TP+R+ Y DD S
Sbjct: 592 PLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAY 651
Query: 106 PGTMYGSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLG-ATPSPSSEAAPYGTPSPL 164
GT + + S Q +P + A PSP P +PSP
Sbjct: 652 GGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP--SPSPQ 709
Query: 165 SYSSRQASPFTPGTGLDQYPTPEWHTT 191
SY Q +P +P + + +H T
Sbjct: 710 SY--HQVAP-SPAGYQNTHSPASYHPT 733
Score = 124 (48.7 bits), Expect = 0.00011, P = 0.00011
Identities = 47/137 (34%), Positives = 59/137 (43%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXX-XXXXXXNVRRDRELIGKTIKITGGPYK--VG- 56
GGF MSPRISSPMHPS RRD ELIG+T++I+ GPYK +G
Sbjct: 464 GGFTPMSPRISSPMHPSAEGQHGGFGSPGGMSRGRGRRDNELIGQTVRISQGPYKGYIGV 523
Query: 57 --SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT---M 109
T LH +T S + + ++Y TP G+ M
Sbjct: 524 VKDATESTARVELHSTCQT------ISVDRQRLTTVDSQRPGGMTSTYGRTPMYGSQTPM 577
Query: 110 YGSSSEHTSY---SPLQ 123
YGS S Y +PLQ
Sbjct: 578 YGSGSRTPMYGSQTPLQ 594
>MGI|MGI:1202400 [details] [associations]
symbol:Supt5 "suppressor of Ty 5" species:10090 "Mus
musculus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISO]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0006368 "transcription
elongation from RNA polymerase II promoter" evidence=ISO]
[GO:0016239 "positive regulation of macroautophagy" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0032044 "DSIF
complex" evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032785 "negative
regulation of DNA-dependent transcription, elongation"
evidence=ISO] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=ISO] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 MGI:MGI:1202400
Pfam:PF00467 GO:GO:0045944 GO:GO:0003682 GO:GO:0000122
GO:GO:0006368 GO:GO:0016239 GO:GO:0032968 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250
GO:GO:0032044 GO:GO:0032785 KO:K15172 InterPro:IPR022581
InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 HOVERGEN:HBG079775 OrthoDB:EOG42V8FG
OMA:VGQTGII ChiTaRS:SUPT5H EMBL:U88539 EMBL:AK145117 EMBL:AK146055
EMBL:AK146453 EMBL:AK146583 EMBL:AK146650 EMBL:BC007132
EMBL:BC057449 EMBL:BC058598 EMBL:BC059849 IPI:IPI00453975
IPI:IPI00656221 PIR:T42204 RefSeq:NP_038704.1 UniGene:Mm.285906
ProteinModelPortal:O55201 SMR:O55201 STRING:O55201
PhosphoSite:O55201 PaxDb:O55201 PRIDE:O55201
Ensembl:ENSMUST00000003527 GeneID:20924 KEGG:mmu:20924
UCSC:uc009fyh.1 UCSC:uc009fyi.1 CTD:20924 InParanoid:O55201
NextBio:299833 Bgee:O55201 CleanEx:MM_SUPT5H Genevestigator:O55201
GermOnline:ENSMUSG00000003435 Uniprot:O55201
Length = 1082
Score = 350 (128.3 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 87/243 (35%), Positives = 132/243 (54%)
Query: 63 GATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYSPL 122
G TP +TPG DPSS +N P + N+ +P Y + S SY P
Sbjct: 846 GGTP---NPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSP---YAAPSPQGSYQP- 898
Query: 123 QASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA------- 171
SP + TPSP + +A+P +PSP+ YS
Sbjct: 899 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSPGG 956
Query: 172 -SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEER 230
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL + E+
Sbjct: 957 YNPHTPGSGIEQNSS-DWVTTDIQVKVRDTYLDTQIVGQTGVIRSVTGGMCSVYLKDSEK 1015
Query: 231 TLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDD-VKMIDVKF 289
+SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G++++ ED +K+++++F
Sbjct: 1016 VVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLEDQQIKILNLRF 1075
Query: 290 LCK 292
L K
Sbjct: 1076 LGK 1078
Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 48/147 (32%), Positives = 63/147 (42%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTP---GPWDPSS--TPARSIHNDAYPMDDSFNNSYPHT 105
P + GSRTP G TPLHDGSRTP G WDP++ TP+R+ Y DD S
Sbjct: 786 PLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAY 845
Query: 106 PGTMYGSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLG-ATPSPSSEAAPYGTPSPL 164
GT + + S Q +P + A PSP P +PSP
Sbjct: 846 GGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP--SPSPQ 903
Query: 165 SYSSRQASPFTPGTGLDQYPTPEWHTT 191
SY Q +P +P + + +H T
Sbjct: 904 SY--HQVAP-SPAGYQNTHSPASYHPT 927
Score = 124 (48.7 bits), Expect = 0.00014, P = 0.00014
Identities = 47/137 (34%), Positives = 59/137 (43%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXX-XXXXXXNVRRDRELIGKTIKITGGPYK--VG- 56
GGF MSPRISSPMHPS RRD ELIG+T++I+ GPYK +G
Sbjct: 658 GGFTPMSPRISSPMHPSAEGQHGGFGSPGGMSRGRGRRDNELIGQTVRISQGPYKGYIGV 717
Query: 57 --SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT---M 109
T LH +T S + + ++Y TP G+ M
Sbjct: 718 VKDATESTARVELHSTCQT------ISVDRQRLTTVDSQRPGGMTSTYGRTPMYGSQTPM 771
Query: 110 YGSSSEHTSY---SPLQ 123
YGS S Y +PLQ
Sbjct: 772 YGSGSRTPMYGSQTPLQ 788
>UNIPROTKB|E9PTB2 [details] [associations]
symbol:E9PTB2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0045944 GO:GO:0003682 GO:GO:0000122
GO:GO:0006368 GO:GO:0016239 GO:GO:0032968 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 GO:GO:0032044
GO:GO:0032785 KO:K15172 InterPro:IPR022581 InterPro:IPR005100
Pfam:PF03439 Pfam:PF11942 GeneTree:ENSGT00440000037640 CTD:6829
IPI:IPI00198210 RefSeq:NP_001100967.2 RefSeq:XP_003753275.1
UniGene:Rn.100021 UniGene:Rn.220352 PRIDE:E9PTB2
Ensembl:ENSRNOT00000048905 GeneID:308472 KEGG:rno:308472
ArrayExpress:E9PTB2 Uniprot:E9PTB2
Length = 1083
Score = 350 (128.3 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 87/243 (35%), Positives = 132/243 (54%)
Query: 63 GATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYSPL 122
G TP +TPG DPSS +N P + N+ +P Y + S SY P
Sbjct: 847 GGTP---NPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSP---YAAPSPQGSYQP- 899
Query: 123 QASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA------- 171
SP + TPSP + +A+P +PSP+ YS
Sbjct: 900 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSPGG 957
Query: 172 -SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEER 230
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL + E+
Sbjct: 958 YNPHTPGSGIEQNSS-DWVTTDIQVKVRDTYLDTQIVGQTGVIRSVTGGMCSVYLKDSEK 1016
Query: 231 TLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDD-VKMIDVKF 289
+SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G++++ ED +K+++++F
Sbjct: 1017 VVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIIRMDLEDQQIKILNLRF 1076
Query: 290 LCK 292
L K
Sbjct: 1077 LGK 1079
Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 48/147 (32%), Positives = 63/147 (42%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTP---GPWDPSS--TPARSIHNDAYPMDDSFNNSYPHT 105
P + GSRTP G TPLHDGSRTP G WDP++ TP+R+ Y DD S
Sbjct: 787 PLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAY 846
Query: 106 PGTMYGSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLG-ATPSPSSEAAPYGTPSPL 164
GT + + S Q +P + A PSP P +PSP
Sbjct: 847 GGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP--SPSPQ 904
Query: 165 SYSSRQASPFTPGTGLDQYPTPEWHTT 191
SY Q +P +P + + +H T
Sbjct: 905 SY--HQVAP-SPAGYQNTHSPASYHPT 928
Score = 124 (48.7 bits), Expect = 0.00014, P = 0.00014
Identities = 47/137 (34%), Positives = 59/137 (43%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXX-XXXXXXNVRRDRELIGKTIKITGGPYK--VG- 56
GGF MSPRISSPMHPS RRD ELIG+T++I+ GPYK +G
Sbjct: 659 GGFTPMSPRISSPMHPSAEGQHGGFGSPGGMSRGRGRRDNELIGQTVRISQGPYKGYIGV 718
Query: 57 --SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT---M 109
T LH +T S + + ++Y TP G+ M
Sbjct: 719 VKDATESTARVELHSTCQT------ISVDRQRLTTVDSQRPGGMTSTYGRTPMYGSQTPM 772
Query: 110 YGSSSEHTSY---SPLQ 123
YGS S Y +PLQ
Sbjct: 773 YGSGSRTPMYGSQTPLQ 789
>UNIPROTKB|I3LA48 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 Pfam:PF00467
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439
Pfam:PF11942 GeneTree:ENSGT00440000037640 EMBL:FP102918
Ensembl:ENSSSCT00000031855 Uniprot:I3LA48
Length = 1083
Score = 350 (128.3 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 86/242 (35%), Positives = 132/242 (54%)
Query: 63 GATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYSPL 122
G TP +TPG DPSS +N P + N+ +P Y + S SY P
Sbjct: 848 GGTP---NPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSP---YAAPSPQGSYQP- 900
Query: 123 QASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA------- 171
SP + TPSP + +A+P +PSP+ YS
Sbjct: 901 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSPGG 958
Query: 172 -SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEER 230
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL + E+
Sbjct: 959 YNPHTPGSGIEQNSS-DWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEK 1017
Query: 231 TLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFL 290
+SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G+V++ ++ +K+++++FL
Sbjct: 1018 VVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFL 1077
Query: 291 CK 292
K
Sbjct: 1078 GK 1079
Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 48/147 (32%), Positives = 63/147 (42%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTP---GPWDPSS--TPARSIHNDAYPMDDSFNNSYPHT 105
P + GSRTP G TPLHDGSRTP G WDP++ TP+R+ Y DD S
Sbjct: 788 PLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAY 847
Query: 106 PGTMYGSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLG-ATPSPSSEAAPYGTPSPL 164
GT + + S Q +P + A PSP P +PSP
Sbjct: 848 GGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP--SPSPQ 905
Query: 165 SYSSRQASPFTPGTGLDQYPTPEWHTT 191
SY Q +P +P + + +H T
Sbjct: 906 SY--HQVAP-SPAGYQNTHSPASYHPT 929
Score = 119 (46.9 bits), Expect = 0.00050, P = 0.00050
Identities = 47/141 (33%), Positives = 60/141 (42%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXXXXXXXXNV-----RRDRELIGKTIKITGGPYK- 54
GGF MSPRISSPMHPS + RRD ELIG+T++I+ GPYK
Sbjct: 656 GGFAPMSPRISSPMHPSAGGQRGGFGSPGGGGGGMSRGRGRRDNELIGQTVRISQGPYKG 715
Query: 55 -VG---SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT 108
+G T LH +T S + + ++Y TP G+
Sbjct: 716 YIGVVKDATESTARVELHSTCQT------ISVDRQRLTTVGSRRPGGMTSTYGRTPMYGS 769
Query: 109 ---MYGSSSEHTSY---SPLQ 123
MYGS S Y +PLQ
Sbjct: 770 QTPMYGSGSRTPMYGSQTPLQ 790
>UNIPROTKB|E1BC98 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR006645
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM00738 SMART:SM01104 Pfam:PF00467 GO:GO:0045944
GO:GO:0003682 GO:GO:0000122 GO:GO:0006368 GO:GO:0016239
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 GO:GO:0032785 InterPro:IPR005100
Pfam:PF03439 GeneTree:ENSGT00440000037640 OMA:VGQTGII
EMBL:DAAA02047062 EMBL:DAAA02047059 EMBL:DAAA02047060
EMBL:DAAA02047061 IPI:IPI00842593 Ensembl:ENSBTAT00000044229
ArrayExpress:E1BC98 Uniprot:E1BC98
Length = 1083
Score = 350 (128.3 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 86/242 (35%), Positives = 132/242 (54%)
Query: 63 GATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYSPL 122
G TP +TPG DPSS +N P + N+ +P Y + S SY P
Sbjct: 848 GGTP---NPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSP---YAAPSPQGSYQP- 900
Query: 123 QASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA------- 171
SP + TPSP + +A+P +PSP+ YS
Sbjct: 901 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSPGG 958
Query: 172 -SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEER 230
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL + E+
Sbjct: 959 YNPHTPGSGIEQNSS-DWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEK 1017
Query: 231 TLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFL 290
+SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G+V++ ++ +K+++++FL
Sbjct: 1018 VVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFL 1077
Query: 291 CK 292
K
Sbjct: 1078 GK 1079
Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 48/147 (32%), Positives = 63/147 (42%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTP---GPWDPSS--TPARSIHNDAYPMDDSFNNSYPHT 105
P + GSRTP G TPLHDGSRTP G WDP++ TP+R+ Y DD S
Sbjct: 788 PLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAY 847
Query: 106 PGTMYGSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLG-ATPSPSSEAAPYGTPSPL 164
GT + + S Q +P + A PSP P +PSP
Sbjct: 848 GGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP--SPSPQ 905
Query: 165 SYSSRQASPFTPGTGLDQYPTPEWHTT 191
SY Q +P +P + + +H T
Sbjct: 906 SY--HQVAP-SPAGYQNTHSPASYHPT 929
Score = 117 (46.2 bits), Expect = 0.00085, P = 0.00085
Identities = 47/141 (33%), Positives = 60/141 (42%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXXXXXXXXNV-----RRDRELIGKTIKITGGPYK- 54
GGF MSPRISSPMHPS + RRD ELIG+T++I+ GPYK
Sbjct: 656 GGFAPMSPRISSPMHPSAGGQRGGFGSPGGGGGGMSRGRGRRDNELIGQTVRISQGPYKG 715
Query: 55 -VG---SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT 108
+G T LH +T S + + ++Y TP G+
Sbjct: 716 YIGVVKDATESTARVELHSTCQT------ISVDRQRLTTVGSRRPGGMASTYGRTPMYGS 769
Query: 109 ---MYGSSSEHTSY---SPLQ 123
MYGS S Y +PLQ
Sbjct: 770 QTPMYGSGSRTPMYGSQTPLQ 790
>UNIPROTKB|E2RLS8 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR006645
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM00738 SMART:SM01104 Pfam:PF00467 GO:GO:0045944
GO:GO:0003682 GO:GO:0000122 GO:GO:0006368 GO:GO:0016239
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 GO:GO:0032785 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 CTD:6829 OMA:VGQTGII EMBL:AAEX03000956
RefSeq:XP_533673.2 Ensembl:ENSCAFT00000008856 GeneID:476462
KEGG:cfa:476462 Uniprot:E2RLS8
Length = 1087
Score = 350 (128.3 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 86/242 (35%), Positives = 132/242 (54%)
Query: 63 GATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYSPL 122
G TP +TPG DPSS +N P + N+ +P Y + S SY P
Sbjct: 852 GGTP---NPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSP---YAAPSPQGSYQP- 904
Query: 123 QASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA------- 171
SP + TPSP + +A+P +PSP+ YS
Sbjct: 905 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSPGG 962
Query: 172 -SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEER 230
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL + E+
Sbjct: 963 YNPHTPGSGIEQNSS-DWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEK 1021
Query: 231 TLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFL 290
+SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G+V++ ++ +K+++++FL
Sbjct: 1022 VVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFL 1081
Query: 291 CK 292
K
Sbjct: 1082 GK 1083
Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 48/147 (32%), Positives = 63/147 (42%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTP---GPWDPSS--TPARSIHNDAYPMDDSFNNSYPHT 105
P + GSRTP G TPLHDGSRTP G WDP++ TP+R+ Y DD S
Sbjct: 792 PLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAY 851
Query: 106 PGTMYGSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLG-ATPSPSSEAAPYGTPSPL 164
GT + + S Q +P + A PSP P +PSP
Sbjct: 852 GGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP--SPSPQ 909
Query: 165 SYSSRQASPFTPGTGLDQYPTPEWHTT 191
SY Q +P +P + + +H T
Sbjct: 910 SY--HQVAP-SPAGYQNTHSPASYHPT 933
Score = 120 (47.3 bits), Expect = 0.00039, P = 0.00039
Identities = 47/141 (33%), Positives = 60/141 (42%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXXXXXXXXNV-----RRDRELIGKTIKITGGPYK- 54
GGF MSPRISSPMHPS + RRD ELIG+T++I+ GPYK
Sbjct: 660 GGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKG 719
Query: 55 -VG---SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT 108
+G T LH +T S + + ++Y TP G+
Sbjct: 720 YIGVVKDATESTARVELHSTCQT------ISVDRQRLTTVGSRRPGGMTSTYGRTPMYGS 773
Query: 109 ---MYGSSSEHTSY---SPLQ 123
MYGS S Y +PLQ
Sbjct: 774 QTPMYGSGSRTPMYGSQTPLQ 794
>UNIPROTKB|O00267 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9606 "Homo sapiens" [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0010033 "response to organic substance"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IDA;TAS] [GO:0019899 "enzyme binding" evidence=IPI]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0007049 "cell
cycle" evidence=NAS] [GO:0045090 "retroviral genome replication"
evidence=NAS] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0032044 "DSIF complex" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016239 "positive regulation of macroautophagy"
evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 Reactome:REACT_116125 Reactome:REACT_1675
GO:GO:0045944 GO:GO:0010033 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0007049 GO:GO:0006368 GO:GO:0016239
Reactome:REACT_1788 GO:GO:0032968 GO:GO:0006370 GO:GO:0050434
Reactome:REACT_1892 GO:GO:0032786 InterPro:IPR008991
SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250
GO:GO:0045090 GO:GO:0032044 GO:GO:0032785 PDB:3H7H PDBsum:3H7H
HOGENOM:HOG000038564 KO:K15172 InterPro:IPR022581
InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942 CTD:6829
HOVERGEN:HBG079775 OMA:VGQTGII EMBL:U56402 EMBL:Y12790
EMBL:AB000516 EMBL:AF040253 EMBL:AB209257 EMBL:BC024203
IPI:IPI00298058 IPI:IPI00655641 RefSeq:NP_001104490.1
RefSeq:NP_001124296.1 RefSeq:NP_001124297.1 RefSeq:NP_003160.2
UniGene:Hs.631604 PDB:2DO3 PDB:2E6Z PDB:2E70 PDBsum:2DO3
PDBsum:2E6Z PDBsum:2E70 ProteinModelPortal:O00267 SMR:O00267
DIP:DIP-29014N IntAct:O00267 MINT:MINT-1193818 STRING:O00267
PhosphoSite:O00267 PaxDb:O00267 PRIDE:O00267 DNASU:6829
Ensembl:ENST00000359191 Ensembl:ENST00000402194
Ensembl:ENST00000432763 GeneID:6829 KEGG:hsa:6829 UCSC:uc002oln.4
UCSC:uc002olq.4 GeneCards:GC19P039936 HGNC:HGNC:11469 HPA:CAB034370
HPA:HPA029273 MIM:602102 neXtProt:NX_O00267 PharmGKB:PA36255
InParanoid:O00267 PhylomeDB:O00267 ChiTaRS:SUPT5H
EvolutionaryTrace:O00267 GenomeRNAi:6829 NextBio:26663
ArrayExpress:O00267 Bgee:O00267 CleanEx:HS_SUPT5H
Genevestigator:O00267 GermOnline:ENSG00000196235 Uniprot:O00267
Length = 1087
Score = 350 (128.3 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 86/242 (35%), Positives = 132/242 (54%)
Query: 63 GATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYSPL 122
G TP +TPG DPSS +N P + N+ +P Y + S SY P
Sbjct: 852 GGTP---NPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSP---YAAPSPQGSYQP- 904
Query: 123 QASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA------- 171
SP + TPSP + +A+P +PSP+ YS
Sbjct: 905 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSPGG 962
Query: 172 -SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEER 230
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL + E+
Sbjct: 963 YNPHTPGSGIEQNSS-DWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEK 1021
Query: 231 TLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFL 290
+SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G+V++ ++ +K+++++FL
Sbjct: 1022 VVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFL 1081
Query: 291 CK 292
K
Sbjct: 1082 GK 1083
Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 48/147 (32%), Positives = 63/147 (42%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTP---GPWDPSS--TPARSIHNDAYPMDDSFNNSYPHT 105
P + GSRTP G TPLHDGSRTP G WDP++ TP+R+ Y DD S
Sbjct: 792 PLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAY 851
Query: 106 PGTMYGSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLG-ATPSPSSEAAPYGTPSPL 164
GT + + S Q +P + A PSP P +PSP
Sbjct: 852 GGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP--SPSPQ 909
Query: 165 SYSSRQASPFTPGTGLDQYPTPEWHTT 191
SY Q +P +P + + +H T
Sbjct: 910 SY--HQVAP-SPAGYQNTHSPASYHPT 933
Score = 120 (47.3 bits), Expect = 0.00039, P = 0.00039
Identities = 47/141 (33%), Positives = 60/141 (42%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXXXXXXXXNV-----RRDRELIGKTIKITGGPYK- 54
GGF MSPRISSPMHPS + RRD ELIG+T++I+ GPYK
Sbjct: 660 GGFAPMSPRISSPMHPSAGGQRGGFGSPGGGSGGMSRGRGRRDNELIGQTVRISQGPYKG 719
Query: 55 -VG---SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT 108
+G T LH +T S + + ++Y TP G+
Sbjct: 720 YIGVVKDATESTARVELHSTCQT------ISVDRQRLTTVGSRRPGGMTSTYGRTPMYGS 773
Query: 109 ---MYGSSSEHTSY---SPLQ 123
MYGS S Y +PLQ
Sbjct: 774 QTPMYGSGSRTPMYGSQTPLQ 794
>UNIPROTKB|I3LMJ9 [details] [associations]
symbol:SUPT5H "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0032785
"negative regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=IEA] [GO:0019899
"enzyme binding" evidence=IEA] [GO:0016239 "positive regulation of
macroautophagy" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR006645
InterPro:IPR017071 InterPro:IPR024945 PIRSF:PIRSF036945
SMART:SM00738 SMART:SM01104 Pfam:PF00467 GO:GO:0045944
GO:GO:0003682 GO:GO:0000122 GO:GO:0006368 GO:GO:0016239
GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824
SMART:SM00739 GO:GO:0032044 GO:GO:0032785 InterPro:IPR022581
InterPro:IPR005100 Pfam:PF03439 Pfam:PF11942
GeneTree:ENSGT00440000037640 OMA:VGQTGII EMBL:FP102918
Ensembl:ENSSSCT00000030229 Uniprot:I3LMJ9
Length = 1088
Score = 350 (128.3 bits), Expect = 1.1e-30, P = 1.1e-30
Identities = 86/242 (35%), Positives = 132/242 (54%)
Query: 63 GATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYSPL 122
G TP +TPG DPSS +N P + N+ +P Y + S SY P
Sbjct: 853 GGTP---NPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSP---YAAPSPQGSYQP- 905
Query: 123 QASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA------- 171
SP + TPSP + +A+P +PSP+ YS
Sbjct: 906 SPSPQSYHQVAPSPAGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSPGG 963
Query: 172 -SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEER 230
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL + E+
Sbjct: 964 YNPHTPGSGIEQNSS-DWVTTDIQVKVRDTYLDTQVVGQTGVIRSVTGGMCSVYLKDSEK 1022
Query: 231 TLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFL 290
+SI + LEP+ P N+KVKVI+GE +E TGVLLS+D +G+V++ ++ +K+++++FL
Sbjct: 1023 VVSISSEHLEPITPTKNNKVKVILGEDREATGVLLSIDGEDGIVRMDLDEQLKILNLRFL 1082
Query: 291 CK 292
K
Sbjct: 1083 GK 1084
Score = 145 (56.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 48/147 (32%), Positives = 63/147 (42%)
Query: 52 PYKVGSRTPG-GGATPLHDGSRTP---GPWDPSS--TPARSIHNDAYPMDDSFNNSYPHT 105
P + GSRTP G TPLHDGSRTP G WDP++ TP+R+ Y DD S
Sbjct: 793 PLQDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTPSRAEEEYEYAFDDEPTPSPQAY 852
Query: 106 PGTMYGSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLG-ATPSPSSEAAPYGTPSPL 164
GT + + S Q +P + A PSP P +PSP
Sbjct: 853 GGTPNPQTPGYPDPSSPQVNPQYNPQTPGTPAMYNTDQFSPYAAPSPQGSYQP--SPSPQ 910
Query: 165 SYSSRQASPFTPGTGLDQYPTPEWHTT 191
SY Q +P +P + + +H T
Sbjct: 911 SY--HQVAP-SPAGYQNTHSPASYHPT 934
Score = 119 (46.9 bits), Expect = 0.00051, P = 0.00051
Identities = 47/141 (33%), Positives = 60/141 (42%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXXXXXXXXNV-----RRDRELIGKTIKITGGPYK- 54
GGF MSPRISSPMHPS + RRD ELIG+T++I+ GPYK
Sbjct: 661 GGFAPMSPRISSPMHPSAGGQRGGFGSPGGGGGGMSRGRGRRDNELIGQTVRISQGPYKG 720
Query: 55 -VG---SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT 108
+G T LH +T S + + ++Y TP G+
Sbjct: 721 YIGVVKDATESTARVELHSTCQT------ISVDRQRLTTVGSRRPGGMTSTYGRTPMYGS 774
Query: 109 ---MYGSSSEHTSY---SPLQ 123
MYGS S Y +PLQ
Sbjct: 775 QTPMYGSGSRTPMYGSQTPLQ 795
>UNIPROTKB|H9L0H1 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9031 "Gallus gallus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0016239 "positive regulation of macroautophagy"
evidence=IEA] [GO:0019899 "enzyme binding" evidence=IEA]
[GO:0032044 "DSIF complex" evidence=IEA] [GO:0032785 "negative
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM01104 Pfam:PF00467 GO:GO:0006357
GO:GO:0032784 InterPro:IPR005824 SMART:SM00739 InterPro:IPR022581
Pfam:PF11942 GeneTree:ENSGT00440000037640 EMBL:AADN02036678
EMBL:AADN02036679 EMBL:AADN02036680 Ensembl:ENSGALT00000023124
Uniprot:H9L0H1
Length = 962
Score = 344 (126.2 bits), Expect = 3.9e-30, P = 3.9e-30
Identities = 86/244 (35%), Positives = 132/244 (54%)
Query: 61 GGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYS 120
G G TP +TPG DPSS +N P + N+ +P Y S SY
Sbjct: 725 GYGGTP---NPQTPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSP---YAVPSPQGSYQ 778
Query: 121 PLQASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA----- 171
P SP + TPSP + +A+P +PSP+ YS
Sbjct: 779 P-SPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSP 835
Query: 172 ---SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEE 228
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL +
Sbjct: 836 GGYNPHTPGSGIEQ-SSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVTGGMCSVYLKDS 894
Query: 229 ERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVK 288
E+ +SI + LEPV P ++KVKVI+GE +E TG+LLS+D +G+V++ ++ +K+++++
Sbjct: 895 EKVVSISSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLR 954
Query: 289 FLCK 292
FL K
Sbjct: 955 FLGK 958
Score = 123 (48.4 bits), Expect = 0.00016, P = 0.00016
Identities = 56/196 (28%), Positives = 71/196 (36%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXXXXXXXXNVRRDRELIGKTIKITGGPYK--VG-- 56
G F MSPRISSPMHPS RRD +LIG+T++I+ GPYK +G
Sbjct: 540 GSFAPMSPRISSPMHPSGAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVV 599
Query: 57 -SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT---MY 110
T LH +T S + + ++Y TP G+ MY
Sbjct: 600 KDATESTARVELHSTCQT------ISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMY 653
Query: 111 GSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLGATPSPSSEAAPYGTPSPLSYSSRQ 170
GS S Y +P TP+ S P +P SR
Sbjct: 654 GSGSRTPMYG--SQTPLHDGDRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTP----SRA 707
Query: 171 ASPFTPGTGLDQYPTP 186
F G D PTP
Sbjct: 708 DEDFE--YGFDDEPTP 721
>UNIPROTKB|Q5ZI08 [details] [associations]
symbol:SUPT5H "Transcription elongation factor SPT5"
species:9031 "Gallus gallus" [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032044 "DSIF complex" evidence=ISS]
InterPro:IPR006645 InterPro:IPR017071 InterPro:IPR024945
PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104 Pfam:PF00467
GO:GO:0006351 GO:GO:0032968 InterPro:IPR008991 SUPFAM:SSF50104
InterPro:IPR005824 SMART:SM00739 eggNOG:COG0250 GO:GO:0032044
KO:K15172 InterPro:IPR022581 InterPro:IPR005100 Pfam:PF03439
Pfam:PF11942 EMBL:AJ720976 IPI:IPI00594731 RefSeq:NP_001026555.1
UniGene:Gga.7037 ProteinModelPortal:Q5ZI08 SMR:Q5ZI08 STRING:Q5ZI08
GeneID:426493 KEGG:gga:426493 CTD:6829 HOVERGEN:HBG079775
NextBio:20828050 Uniprot:Q5ZI08
Length = 1079
Score = 344 (126.2 bits), Expect = 4.8e-30, P = 4.8e-30
Identities = 86/244 (35%), Positives = 132/244 (54%)
Query: 61 GGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTPGTMYGSSSEHTSYS 120
G G TP +TPG DPSS +N P + N+ +P Y S SY
Sbjct: 842 GYGGTP---NPQTPGYPDPSSPQVTQPYNPQTPGTPAMYNTDQFSP---YAVPSPQGSYQ 895
Query: 121 PLQASPXXXXXXXXXXXXXXXXXYLGA---TPSPSS-EAAPYGTPSPLSYSSRQA----- 171
P SP + TPSP + +A+P +PSP+ YS
Sbjct: 896 P-SPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASP--SPSPVGYSPMTPGAPSP 952
Query: 172 ---SPFTPGTGLDQYPTPEWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEE 228
+P TPG+G++Q + +W TTDI+V++ + D + GQ GVIR + G+CSVYL +
Sbjct: 953 GGYNPHTPGSGIEQ-SSSDWVTTDIQVKVRDTYLDSQAVGQTGVIRSVTGGMCSVYLKDS 1011
Query: 229 ERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVK 288
E+ +SI + LEPV P ++KVKVI+GE +E TG+LLS+D +G+V++ ++ +K+++++
Sbjct: 1012 EKVVSISSEHLEPVTPTKSNKVKVILGEDREATGILLSIDGEDGIVRMDLDEQLKILNLR 1071
Query: 289 FLCK 292
FL K
Sbjct: 1072 FLGK 1075
Score = 124 (48.7 bits), Expect = 0.00014, P = 0.00014
Identities = 56/196 (28%), Positives = 71/196 (36%)
Query: 3 GGF--MSPRISSPMHPSXXXXXXXXXXXXXXXXNVRRDRELIGKTIKITGGPYK--VG-- 56
G F MSPRISSPMHPS RRD +LIG+T++I+ GPYK +G
Sbjct: 657 GSFAPMSPRISSPMHPSGAGQRGGFGGGGMSRGRGRRDNDLIGQTVRISQGPYKGYIGVV 716
Query: 57 -SRTPGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSFNNSYPHTP--GT---MY 110
T LH +T S + + ++Y TP G+ MY
Sbjct: 717 KDATESTARVELHSTCQT------ISVDRQRLTTVGSRRPGGMTSTYGRTPMYGSQTPMY 770
Query: 111 GSSSEHTSYSPLQASPXXXXXXXXXXXXXXXXXYLGATPSPSSEAAPYGTPSPLSYSSRQ 170
GS S Y +P TP+ S P +P SR
Sbjct: 771 GSGSRTPMYG--SQTPLHDGSRTPHYGSQTPLHDGSRTPAQSGAWDPNNPNTP----SRA 824
Query: 171 ASPFTPGTGLDQYPTP 186
F G D PTP
Sbjct: 825 DEDFE--YGFDDEPTP 838
>TAIR|locus:2137420 [details] [associations]
symbol:AT4G08360 "AT4G08360" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL109819
EMBL:AL161511 EMBL:AY122908 IPI:IPI00543961 PIR:T14190
RefSeq:NP_192576.1 UniGene:At.33757 ProteinModelPortal:Q9STN2
STRING:Q9STN2 PaxDb:Q9STN2 PRIDE:Q9STN2 EnsemblPlants:AT4G08360.1
GeneID:826392 KEGG:ath:AT4G08360 TAIR:At4g08360 eggNOG:KOG1998
InParanoid:Q9STN2 PhylomeDB:Q9STN2 Genevestigator:Q9STN2
Uniprot:Q9STN2
Length = 141
Score = 156 (60.0 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 35/109 (32%), Positives = 59/109 (54%)
Query: 187 EWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAE--EERTLSIEAHELEPVMP 244
E+ D+EVR + ++GVIR + G+C V L E T+ + + ELE V P
Sbjct: 30 EYSDEDVEVRFMPDILVTVHNSEVGVIRDVSDGMCKVSLGSGGEGDTIMVPSSELEIVRP 89
Query: 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMIDVKFLCKY 293
+ +D VK++ G + T L+ +D + +VK+ DVK++D+ L K+
Sbjct: 90 RKSDHVKILGGSYLGLTCKLIGIDGLDAIVKIDGNLDVKILDLALLAKF 138
>WB|WBGene00005015 [details] [associations]
symbol:spt-5 species:6239 "Caenorhabditis elegans"
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006351 GO:GO:0040035 GO:GO:0032968 EMBL:Z68752
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0250 GO:GO:0032044 HOGENOM:HOG000038564 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 EMBL:Z68316 PIR:T23467 RefSeq:NP_502283.1
ProteinModelPortal:Q21338 SMR:Q21338 STRING:Q21338 PaxDb:Q21338
EnsemblMetazoa:K08E4.1 GeneID:178143 KEGG:cel:CELE_K08E4.1
UCSC:K08E4.1 CTD:178143 WormBase:K08E4.1
GeneTree:ENSGT00440000037640 InParanoid:Q21338 OMA:PAYGNES
NextBio:899898 Uniprot:Q21338
Length = 1208
Score = 160 (61.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 60/245 (24%), Positives = 106/245 (43%)
Query: 74 PGPWD--PSSTPARSIHNDAYPMDDSFNNSYP-HTPGTM------YGSSSEHTSYSPLQA 124
P +D P+ TPA Y D++ NS P + P G +S T SP +
Sbjct: 970 PEAYDNAPARTPAFVSRTPGY---DTYENSSPTYEPDAATKVEEDIGDTSSPTYDSPPHS 1026
Query: 125 ----SPXXXXXXXXXXXXXXXXXYLGATPSPSSEAA--PYGTPSPLSYSSRQASPFTPGT 178
+P A +P S A Y PSP ++ ++ +
Sbjct: 1027 YVVPTPGAMLNPATPGAYHVDTPGFAAPMTPGSGGAYDQYVAPSP--FAGYDSNNYNNAD 1084
Query: 179 G-LDQYPTP-----EWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEERTL 232
G ++Q P W ++ V+I ++ + F G+ +I+ + G VY+ + + L
Sbjct: 1085 GAIEQIPDHFLAQGVWIVQNLCVQIKDH--EGRFNGREAIIKDVTDGKVDVYMPDHKCNL 1142
Query: 233 SIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEE-DDVKMIDVKFLC 291
++ +L P+ PQP D +VI G+ +G L+S+D E V++ E+ D+++I++ C
Sbjct: 1143 EVDFDQLTPMKPQPGDDARVIFGQDAGHSGQLVSMDGFEAVIRSQEDMSDMRVINIGLCC 1202
Query: 292 KYKPE 296
K E
Sbjct: 1203 KMHSE 1207
Score = 59 (25.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 35 VRRDRELIGKTIKITGGPYK 54
VRRD LIGK ++I GP K
Sbjct: 725 VRRDLTLIGKNVRIIKGPMK 744
>UNIPROTKB|Q21338 [details] [associations]
symbol:spt-5 "Transcription elongation factor SPT5"
species:6239 "Caenorhabditis elegans" [GO:0032044 "DSIF complex"
evidence=ISS] InterPro:IPR006645 InterPro:IPR017071
InterPro:IPR024945 PIRSF:PIRSF036945 SMART:SM00738 SMART:SM01104
Pfam:PF00467 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006351 GO:GO:0040035 GO:GO:0032968 EMBL:Z68752
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
eggNOG:COG0250 GO:GO:0032044 HOGENOM:HOG000038564 KO:K15172
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 EMBL:Z68316 PIR:T23467 RefSeq:NP_502283.1
ProteinModelPortal:Q21338 SMR:Q21338 STRING:Q21338 PaxDb:Q21338
EnsemblMetazoa:K08E4.1 GeneID:178143 KEGG:cel:CELE_K08E4.1
UCSC:K08E4.1 CTD:178143 WormBase:K08E4.1
GeneTree:ENSGT00440000037640 InParanoid:Q21338 OMA:PAYGNES
NextBio:899898 Uniprot:Q21338
Length = 1208
Score = 160 (61.4 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 60/245 (24%), Positives = 106/245 (43%)
Query: 74 PGPWD--PSSTPARSIHNDAYPMDDSFNNSYP-HTPGTM------YGSSSEHTSYSPLQA 124
P +D P+ TPA Y D++ NS P + P G +S T SP +
Sbjct: 970 PEAYDNAPARTPAFVSRTPGY---DTYENSSPTYEPDAATKVEEDIGDTSSPTYDSPPHS 1026
Query: 125 ----SPXXXXXXXXXXXXXXXXXYLGATPSPSSEAA--PYGTPSPLSYSSRQASPFTPGT 178
+P A +P S A Y PSP ++ ++ +
Sbjct: 1027 YVVPTPGAMLNPATPGAYHVDTPGFAAPMTPGSGGAYDQYVAPSP--FAGYDSNNYNNAD 1084
Query: 179 G-LDQYPTP-----EWHTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEERTL 232
G ++Q P W ++ V+I ++ + F G+ +I+ + G VY+ + + L
Sbjct: 1085 GAIEQIPDHFLAQGVWIVQNLCVQIKDH--EGRFNGREAIIKDVTDGKVDVYMPDHKCNL 1142
Query: 233 SIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEE-DDVKMIDVKFLC 291
++ +L P+ PQP D +VI G+ +G L+S+D E V++ E+ D+++I++ C
Sbjct: 1143 EVDFDQLTPMKPQPGDDARVIFGQDAGHSGQLVSMDGFEAVIRSQEDMSDMRVINIGLCC 1202
Query: 292 KYKPE 296
K E
Sbjct: 1203 KMHSE 1207
Score = 59 (25.8 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 35 VRRDRELIGKTIKITGGPYK 54
VRRD LIGK ++I GP K
Sbjct: 725 VRRDLTLIGKNVRIIKGPMK 744
>TAIR|locus:2040954 [details] [associations]
symbol:AT2G34210 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0032968 "positive regulation of transcription
elongation from RNA polymerase II promoter" evidence=IEA]
[GO:0000394 "RNA splicing, via endonucleolytic cleavage and
ligation" evidence=RCA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=RCA] InterPro:IPR005825
InterPro:IPR006645 InterPro:IPR017071 PIRSF:PIRSF036945
PROSITE:PS01108 SMART:SM00738 Pfam:PF00467 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006412 GO:GO:0006351
GO:GO:0005840 GO:GO:0003735 GO:GO:0032968 EMBL:AC004481
InterPro:IPR008991 SUPFAM:SSF50104 InterPro:IPR005824 SMART:SM00739
IPI:IPI00546552 IPI:IPI01020486 PIR:T02309 RefSeq:NP_180968.2
UniGene:At.49368 STRING:O80770 PaxDb:O80770 PRIDE:O80770
GeneID:817982 KEGG:ath:AT2G34210 TAIR:At2g34210 eggNOG:COG5164
HOGENOM:HOG000038564 InParanoid:O80770 KO:K15172 OMA:INNANAP
ArrayExpress:O80770 Genevestigator:O80770 GermOnline:AT2G34210
InterPro:IPR022581 InterPro:IPR005100 PANTHER:PTHR11125:SF7
Pfam:PF03439 Pfam:PF11942 Uniprot:O80770
Length = 989
Score = 165 (63.1 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 77/248 (31%), Positives = 115/248 (46%)
Query: 63 GATPLHDGSRTP--G-PWDP--SSTPARSIHNDAYPMDDSFNNSYPH---TPGTMYGSSS 114
GATP+HDG RTP G W+P +P R D P S+ S P+ TPG+ +GSS+
Sbjct: 767 GATPIHDGMRTPMRGRAWNPYMPMSPPRDNWEDGNP--GSWGTS-PYEAATPGSDWGSST 823
Query: 115 EHTSYSPLQASPXXXXXXXXXXXXXXXXXYLGA-TPSPSSEAAPYGTPSPLSY--SSRQA 171
P ++S Y A TP ++ A TPS SY ++
Sbjct: 824 ------PGRSS------------------YRDAGTPINNANAPSPMTPSSTSYLPTTPGG 859
Query: 172 SPFTPGTGLDQYPTP---EWHTTDIE-VRINENARDPEFRGQIGVIRH-LGSGVCSVYLA 226
TPGT LD + T I + +N + + E R GVIR L G C V L
Sbjct: 860 QAMTPGTDLDVMSLDIGGDAETRFIPGILVNVH-KAGEDRNP-GVIRDVLPDGSCVVALG 917
Query: 227 E--EERTLSIEAHELEPVMPQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKM 284
E T+ +++ V P+ N++VK++ G++ T ++ D +G+VKL E D+K+
Sbjct: 918 HRGEGETIRATQNKVSLVCPKKNERVKILGGKYCGSTAKVIGEDGQDGIVKLDESLDIKI 977
Query: 285 IDVKFLCK 292
+ + L K
Sbjct: 978 LKLTILAK 985
Score = 45 (20.9 bits), Expect = 6.3e-10, Sum P(2) = 6.3e-10
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 36 RRDRELIGKTIKITGGPYK 54
R D L+G +KI GP+K
Sbjct: 680 RGDDHLVGTYVKIRLGPFK 698
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.311 0.132 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 296 263 0.00091 114 3 11 23 0.44 34
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 606 (64 KB)
Total size of DFA: 203 KB (2113 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.30u 0.10s 28.40t Elapsed: 00:00:02
Total cpu time: 28.31u 0.10s 28.41t Elapsed: 00:00:02
Start: Thu Aug 15 15:55:22 2013 End: Thu Aug 15 15:55:24 2013