RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13744
(296 letters)
>d1mkha_ b.40.4.4 (A:) C-terminal domain of methionyl-tRNA
synthetase, MetRS-CD {Archaeon Pyrococcus abyssi [TaxId:
29292]}
Length = 107
Score = 34.1 bits (78), Expect = 0.004
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 220 VCSVYLAEEERTLSIEAHELEP--------VMPQPNDKVKVIVGEHKECTGVLLSVDNGE 271
V V L +E RTL + V+ N + K + G + G+LL+ D+GE
Sbjct: 32 VVKVDLGDEVRTLVAGLKKYYKPEELLNRYVVVVANLEPKKLRGIGSQ--GMLLAADDGE 89
Query: 272 GVVKLTEEDDVK 283
V L + +VK
Sbjct: 90 RVALLMPDKEVK 101
>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 119
Score = 30.1 bits (68), Expect = 0.10
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 247 NDKVKVIVGEHKECTGVLLSVDNGEGVV 274
D V+V+ G+ G +++VD + V+
Sbjct: 45 GDTVEVLRGDFAGEEGEVINVDLDKAVI 72
>d2j01y1 b.34.5.1 (Y:2-102) Ribosomal proteins L24 (L24p) {Thermus
thermophilus [TaxId: 274]}
Length = 101
Score = 29.7 bits (67), Expect = 0.11
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 247 NDKVKVIVGEHKECTGVLLSVDNGEGVVKLTE 278
D V V G++K G + V + V +
Sbjct: 9 GDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG 40
>d2do3a1 b.34.5.5 (A:462-523) Transcription elongation factor SPT5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 28.5 bits (64), Expect = 0.14
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 246 PNDKVKVIVGEHKECTGVLLSVDNGEGVV 274
D VKVI G + TG+++ V+ ++
Sbjct: 13 MGDHVKVIAGRFEGDTGLIVRVEENFVIL 41
>d2zjrr1 b.34.5.1 (R:4-113) Ribosomal proteins L24 (L24p)
{Deinococcus radiodurans [TaxId: 1299]}
Length = 110
Score = 29.7 bits (67), Expect = 0.15
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 247 NDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276
D V V+ G+HK TG +L + V +
Sbjct: 16 GDTVIVLSGKHKGQTGKVLLALPRDQKVVV 45
>d2gycs1 b.34.5.1 (S:3-101) Ribosomal proteins L24 (L24p)
{Escherichia coli [TaxId: 562]}
Length = 99
Score = 29.3 bits (66), Expect = 0.17
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 247 NDKVKVIVGEHKECTGVLLSVDNGEGVV 274
+D+V V+ G+ K G + +V + V+
Sbjct: 5 DDEVIVLTGKDKGKRGKVKNVLSSGKVI 32
>d1lwha2 c.1.8.1 (A:1-391) 4-alpha-glucanotransferase {Thermotoga
maritima [TaxId: 2336]}
Length = 391
Score = 28.5 bits (62), Expect = 1.0
Identities = 7/39 (17%), Positives = 10/39 (25%)
Query: 60 PGGGATPLHDGSRTPGPWDPSSTPARSIHNDAYPMDDSF 98
G P + P PW+ S + F
Sbjct: 319 KGVYQKPNTEVVLDPFPWNESMCVEGQTFWKWPAYNGPF 357
>d1nz9a_ b.34.5.4 (A:) N-utilization substance G protein NusG,
C-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 58
Score = 26.1 bits (58), Expect = 1.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276
+ D+V+V+ G + TG + ++ G VK+
Sbjct: 6 REGDQVRVVSGPFADFTGTVTEINPERGKVKV 37
>d1nppa2 b.34.5.4 (A:191-248) N-utilization substance G protein
NusG, C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 58
Score = 25.7 bits (57), Expect = 1.2
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 245 QPNDKVKVIVGEHKECTGVLLSVDNGEGVVKL 276
+ D+V+VI G TG + V + + +
Sbjct: 6 EKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTV 37
>d1pyba_ b.40.4.4 (A:) Structure-specific tRNA-binding protein
TRBP111 {Aquifex aeolicus [TaxId: 63363]}
Length = 107
Score = 26.8 bits (59), Expect = 1.2
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 10/92 (10%)
Query: 193 IEVRINENARDPE-FRGQIGVIRHLGSGVCSVYLAEEERTLSIEAHELEPVMPQPNDKVK 251
+ E + +G + Y EE ++ N K +
Sbjct: 19 LSAERVEGSEKLLKLTLSLGDEERTVVAGIAKYYTPEELVGKK-------IVIVANLKPR 71
Query: 252 VIVGEHKECTGVLLSVDNGEGVVKLTEEDDVK 283
I G + G++L+ +GE + + + DVK
Sbjct: 72 KIFGIESQ--GMILAASDGENLSVIVPDRDVK 101
>d1zrra1 b.82.1.6 (A:1-179) Acireductone dioxygenase {Klebsiella
pneumoniae [TaxId: 573]}
Length = 179
Score = 26.3 bits (58), Expect = 3.2
Identities = 17/123 (13%), Positives = 34/123 (27%), Gaps = 25/123 (20%)
Query: 184 PTPEWHTTDIEVRINENARDPEFRGQIGVI-RHLGSGVCSVYLAEEERTLSIEAHELEPV 242
WH+T+ E + GV + E ++ H ++ +
Sbjct: 12 QNSLWHSTNAEE-------IQQQLNAKGVRFERWQADRDLGAAPTAETVIAAYQHAIDKL 64
Query: 243 M-----------------PQPNDKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMI 285
+ PQ + + EH + G G+ L D+V +
Sbjct: 65 VAEKGYQSWDVISLRADNPQKEALREKFLNEHTHGEDEVRFFVEGAGLFCLHIGDEVFQV 124
Query: 286 DVK 288
+
Sbjct: 125 LCE 127
>d1m53a2 c.1.8.1 (A:43-520) Isomaltulose synthase PalI {Klebsiella
sp., lx3 [TaxId: 576]}
Length = 478
Score = 26.9 bits (58), Expect = 3.4
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 69 DGSRTPGPWDPSSTPARSIHNDAYPMDDSF 98
D SRTP W+ + + + ++ ++
Sbjct: 415 DNSRTPFQWNDTLNAGFTRGKPWFHINPNY 444
>d1uoka2 c.1.8.1 (A:1-479) Oligo-1,6, glucosidase {Bacillus cereus
[TaxId: 1396]}
Length = 479
Score = 26.9 bits (58), Expect = 3.6
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 69 DGSRTPGPWDPSSTPARSIHNDAYPMDDSF 98
D +RTP WD + + ++ ++
Sbjct: 416 DNARTPMQWDDQNHAGFTTGEPWITVNPNY 445
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 26.5 bits (58), Expect = 3.7
Identities = 2/38 (5%), Positives = 10/38 (26%)
Query: 248 DKVKVIVGEHKECTGVLLSVDNGEGVVKLTEEDDVKMI 285
+ V + ++ V + ++ +
Sbjct: 23 APNGLQVEGKETVQKIVTGVTASQALLDEAVRLGADAV 60
>d3c9fa2 d.159.1.2 (A:16-337) 5'-nucleotidase (syn. UDP-sugar
hydrolase), N-terminal domain {Candida albicans [TaxId:
5476]}
Length = 322
Score = 26.3 bits (57), Expect = 4.9
Identities = 8/48 (16%), Positives = 18/48 (37%)
Query: 189 HTTDIEVRINENARDPEFRGQIGVIRHLGSGVCSVYLAEEERTLSIEA 236
HTTD + + P + G + + + + + L I++
Sbjct: 16 HTTDTHGWYSGHINQPLYHANWGDFISFTTHMRRIAHSRNQDLLLIDS 63
>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal
protein L2 {Deinococcus radiodurans [TaxId: 1299]}
Length = 95
Score = 25.1 bits (55), Expect = 5.1
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 12 SPMHPSGGRGGRGGGRGGHHGGNVRRDRELI 42
+ +GGR RG GG +R +I
Sbjct: 3 EALPKTGGRNNRGRITSRFIGGGHKRLYRII 33
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.132 0.402
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,160,567
Number of extensions: 56285
Number of successful extensions: 145
Number of sequences better than 10.0: 1
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 19
Length of query: 296
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 211
Effective length of database: 1,240,546
Effective search space: 261755206
Effective search space used: 261755206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.7 bits)