BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13745
(406 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NSM|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 From Ostrinia Furnacalis
pdb|3NSN|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Tmg-Chitotriomycin
pdb|3OZP|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Pugnac
pdb|3OZO|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 Complexed With Ngt
Length = 572
Score = 226 bits (575), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 105/189 (55%), Positives = 136/189 (71%), Gaps = 7/189 (3%)
Query: 1 MSDIEVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPT 60
+SD V ILLDTARN+Y++++IK+TI+ MA KLN FHWHITDSQSFPF + K P
Sbjct: 181 ISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPN 240
Query: 61 LTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCF 120
L + GA S +K+Y++ IRE+V +GL RGV V+PE DAPAHVGEGW Q +L VCF
Sbjct: 241 LYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGW-----QDTDLTVCF 295
Query: 121 KKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWN 180
K EPW +CVEPPCGQLNP D +Y+ L +Y +M ++F D + +FHMGGDEV+ CWN
Sbjct: 296 KAEPWKSYCVEPPCGQLNPTKDELYQYLEDIYSDMAEVF--DTTDIFHMGGDEVSEACWN 353
Query: 181 HTKSITDWM 189
+ SI ++M
Sbjct: 354 SSDSIQNFM 362
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 96/125 (76%), Gaps = 10/125 (8%)
Query: 193 FGAWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQAD 252
+GAWVG GNNWCSPYIGWQKVYDN P + E + ++G EAALWSEQ+D
Sbjct: 458 YGAWVGAGNNWCSPYIGWQKVYDNSPAVIA----------LEHRDQVLGGEAALWSEQSD 507
Query: 253 AATLDGRLWPRASAMAERLWSNPASNWRAAEYRFLHQRERLVEIGLAAESIEPEWCYQNE 312
+TLDGRLWPRA+A+AERLW+ PA++W+ AEYR LH RERLV +G+ AES++PEWCYQNE
Sbjct: 508 TSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERLVRMGIQAESLQPEWCYQNE 567
Query: 313 GLCGS 317
G C S
Sbjct: 568 GYCYS 572
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%)
Query: 356 QVNATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
+VNATITAN+FFG HG ETLSQL V+D ++M V I D PVYPYR
Sbjct: 140 RVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDKPVYPYR 190
>pdb|3S6T|A Chain A, Crystal Structure Of Insect Beta-N-Acetyl-D-Hexosaminidase
Ofhex1 V327g Complexed With Pugnac
Length = 575
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 104/189 (55%), Positives = 135/189 (71%), Gaps = 7/189 (3%)
Query: 1 MSDIEVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPT 60
+SD V ILLDTARN+Y++++IK+TI+ MA KLN FHWHITDSQSFPF + K P
Sbjct: 184 ISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPN 243
Query: 61 LTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCF 120
L + GA S +K+Y++ IRE+V +GL RGV V+PE DAPAHVGEGW Q +L VCF
Sbjct: 244 LYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGW-----QDTDLTVCF 298
Query: 121 KKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWN 180
K EPW +C EPPCGQLNP D +Y+ L +Y +M ++F D + +FHMGGDEV+ CWN
Sbjct: 299 KAEPWKSYCGEPPCGQLNPTKDELYQYLEDIYSDMAEVF--DTTDIFHMGGDEVSEACWN 356
Query: 181 HTKSITDWM 189
+ SI ++M
Sbjct: 357 SSDSIQNFM 365
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 96/125 (76%), Gaps = 10/125 (8%)
Query: 193 FGAWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQAD 252
+GAWVG GNNWCSPYIGWQKVYDN P + E + ++G EAALWSEQ+D
Sbjct: 461 YGAWVGAGNNWCSPYIGWQKVYDNSPAVIA----------LEHRDQVLGGEAALWSEQSD 510
Query: 253 AATLDGRLWPRASAMAERLWSNPASNWRAAEYRFLHQRERLVEIGLAAESIEPEWCYQNE 312
+TLDGRLWPRA+A+AERLW+ PA++W+ AEYR LH RERLV +G+ AES++PEWCYQNE
Sbjct: 511 TSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERLVRMGIQAESLQPEWCYQNE 570
Query: 313 GLCGS 317
G C S
Sbjct: 571 GYCYS 575
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%)
Query: 356 QVNATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
+VNATITAN+FFG HG ETLSQL V+D ++M V I D PVYPYR
Sbjct: 143 RVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDKPVYPYR 193
>pdb|3VTR|A Chain A, Crystal Structure Of Insect Beta-n-acetyl-d-hexosaminidase
Ofhex1 E328a Complexed With Tmg-chitotriomycin
Length = 572
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 103/189 (54%), Positives = 134/189 (70%), Gaps = 7/189 (3%)
Query: 1 MSDIEVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPT 60
+SD V ILLDTARN+Y++++IK+TI+ MA KLN HWHITDSQSFPF + K P
Sbjct: 181 ISDKPVYPYRGILLDTARNYYSIESIKRTIEAMAAVKLNTNHWHITDSQSFPFVTTKRPN 240
Query: 61 LTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCF 120
L + GA S +K+Y++ IRE+V +GL RGV V+PE DAPAHVGEGW Q +L VCF
Sbjct: 241 LYKFGALSPQKVYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGW-----QDTDLTVCF 295
Query: 121 KKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWN 180
K EPW +CV PPCGQLNP D +Y+ L +Y +M ++F D + +FHMGGDEV+ CWN
Sbjct: 296 KAEPWKSYCVAPPCGQLNPTKDELYQYLEDIYSDMAEVF--DTTDIFHMGGDEVSEACWN 353
Query: 181 HTKSITDWM 189
+ SI ++M
Sbjct: 354 SSDSIQNFM 362
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 78/125 (62%), Positives = 95/125 (76%), Gaps = 10/125 (8%)
Query: 193 FGAWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQAD 252
+GAWVG GNNWCSPYIGWQKVYDN P + E + ++G EAALWSEQ+D
Sbjct: 458 YGAWVGAGNNWCSPYIGWQKVYDNSPAVIA----------LEHRDQVLGGEAALWSEQSD 507
Query: 253 AATLDGRLWPRASAMAERLWSNPASNWRAAEYRFLHQRERLVEIGLAAESIEPEWCYQNE 312
+TLDGRLWPRA+A+AERLW+ PA++W+ AEYR LH RER V +G+ AES++PEWCYQNE
Sbjct: 508 TSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERFVRMGIQAESLQPEWCYQNE 567
Query: 313 GLCGS 317
G C S
Sbjct: 568 GYCYS 572
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 36/51 (70%)
Query: 356 QVNATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
+VNATITAN+FFG HG ETLSQL V+D ++M V I D PVYPYR
Sbjct: 140 RVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDKPVYPYR 190
>pdb|3LMY|A Chain A, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
pdb|3LMY|B Chain B, The Crystal Structure Of Beta-Hexosaminidase B In Complex
With Pyrimethamine
Length = 556
Score = 174 bits (442), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 167/367 (45%), Gaps = 90/367 (24%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
IL+DT+R++ + I KT+D MA NK N HWHI D QSFP++S +P L+ G+YS
Sbjct: 205 ILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSH 264
Query: 72 IYSREDIREIVHYGLVRGVHVIPELDAPAHV---GEGWNSIEKQKDELLVCFKKEPWTKF 128
+Y+ D+R ++ Y +RG+ V+PE D P H G+G QKD L C+ ++
Sbjct: 265 VYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKG------QKDLLTPCYSRQNKLD- 317
Query: 129 CVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDW 188
G +NP + Y L ++E++++F H+GGDEV CW I D+
Sbjct: 318 ----SFGPINPTLNTTYSFLTTFFKEISEVFPDQ---FIHLGGDEVEFKCWESNPKIQDF 370
Query: 189 MYAK-FG------------------AWVGEGNNWCSPYIGWQKVYDND------------ 217
M K FG A + +G+ I WQ+V+D+
Sbjct: 371 MRQKGFGTDFKKLESFYIQKVLDIIATINKGS------IVWQEVFDDKAKLAPGTIVEVW 424
Query: 218 -----------------PIKL-----LDQTS-------------LNISNNPELKSLIMGQ 242
P+ L LD S L+ + K L +G
Sbjct: 425 KDSAYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGG 484
Query: 243 EAALWSEQADAATLDGRLWPRASAMAERLWSNP-ASNWRAAEYRFLHQRERLVEIGLAAE 301
EA LW E DA L RLWPRASA+ ERLWS+ + A R R R+VE G+AA+
Sbjct: 485 EACLWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQ 544
Query: 302 SIEPEWC 308
+ +C
Sbjct: 545 PLYAGYC 551
Score = 28.1 bits (61), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 359 ATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
A + AN +G G ET SQL+ D Y + I D P + +R
Sbjct: 158 AVLKANRVWGALRGLETFSQLVYQDSYGTFTI--NESTIIDSPRFSHR 203
>pdb|1O7A|A Chain A, Human Beta-Hexosaminidase B
pdb|1O7A|B Chain B, Human Beta-Hexosaminidase B
pdb|1O7A|C Chain C, Human Beta-Hexosaminidase B
pdb|1O7A|D Chain D, Human Beta-Hexosaminidase B
pdb|1O7A|E Chain E, Human Beta-Hexosaminidase B
pdb|1O7A|F Chain F, Human Beta-Hexosaminidase B
Length = 515
Score = 174 bits (441), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 167/367 (45%), Gaps = 90/367 (24%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
IL+DT+R++ + I KT+D MA NK N HWHI D QSFP++S +P L+ G+YS
Sbjct: 164 ILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSH 223
Query: 72 IYSREDIREIVHYGLVRGVHVIPELDAPAHV---GEGWNSIEKQKDELLVCFKKEPWTKF 128
+Y+ D+R ++ Y +RG+ V+PE D P H G+G QKD L C+ ++
Sbjct: 224 VYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKG------QKDLLTPCYSRQNKLD- 276
Query: 129 CVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDW 188
G +NP + Y L ++E++++F H+GGDEV CW I D+
Sbjct: 277 ----SFGPINPTLNTTYSFLTTFFKEISEVFPDQ---FIHLGGDEVEFKCWESNPKIQDF 329
Query: 189 MYAK-FG------------------AWVGEGNNWCSPYIGWQKVYDND------------ 217
M K FG A + +G+ I WQ+V+D+
Sbjct: 330 MRQKGFGTDFKKLESFYIQKVLDIIATINKGS------IVWQEVFDDKAKLAPGTIVEVW 383
Query: 218 -----------------PIKL-----LDQTS-------------LNISNNPELKSLIMGQ 242
P+ L LD S L+ + K L +G
Sbjct: 384 KDSAYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGG 443
Query: 243 EAALWSEQADAATLDGRLWPRASAMAERLWSNP-ASNWRAAEYRFLHQRERLVEIGLAAE 301
EA LW E DA L RLWPRASA+ ERLWS+ + A R R R+VE G+AA+
Sbjct: 444 EACLWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQ 503
Query: 302 SIEPEWC 308
+ +C
Sbjct: 504 PLYAGYC 510
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 359 ATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
A + AN +G G ET SQL+ D Y + I D P + +R
Sbjct: 117 AVLKANRVWGALRGLETFSQLVYQDSYGTFTI--NESTIIDSPRFSHR 162
>pdb|2GK1|B Chain B, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|D Chain D, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|F Chain F, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|H Chain H, X-Ray Crystal Structure Of Ngt-Bound Hexa
Length = 503
Score = 174 bits (441), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 167/367 (45%), Gaps = 90/367 (24%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
IL+DT+R++ + I KT+D MA NK N HWHI D QSFP++S +P L+ G+YS
Sbjct: 156 ILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSH 215
Query: 72 IYSREDIREIVHYGLVRGVHVIPELDAPAHV---GEGWNSIEKQKDELLVCFKKEPWTKF 128
+Y+ D+R ++ Y +RG+ V+PE D P H G+G QKD L C+ ++
Sbjct: 216 VYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKG------QKDLLTPCYSRQNKLD- 268
Query: 129 CVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDW 188
G +NP + Y L ++E++++F H+GGDEV CW I D+
Sbjct: 269 ----SFGPINPTLNTTYSFLTTFFKEISEVFPDQ---FIHLGGDEVEFKCWESNPKIQDF 321
Query: 189 MYAK-FG------------------AWVGEGNNWCSPYIGWQKVYDND------------ 217
M K FG A + +G+ I WQ+V+D+
Sbjct: 322 MRQKGFGTDFKKLESFYIQKVLDIIATINKGS------IVWQEVFDDKAKLAPGTIVEVW 375
Query: 218 -----------------PIKL-----LDQTS-------------LNISNNPELKSLIMGQ 242
P+ L LD S L+ + K L +G
Sbjct: 376 KDSAYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGG 435
Query: 243 EAALWSEQADAATLDGRLWPRASAMAERLWSNP-ASNWRAAEYRFLHQRERLVEIGLAAE 301
EA LW E DA L RLWPRASA+ ERLWS+ + A R R R+VE G+AA+
Sbjct: 436 EACLWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQ 495
Query: 302 SIEPEWC 308
+ +C
Sbjct: 496 PLYAGYC 502
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 359 ATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
A + AN +G G ET SQL+ D Y + I D P + +R
Sbjct: 109 AVLKANRVWGALRGLETFSQLVYQDSYGTFTI--NESTIIDSPRFSHR 154
>pdb|1NOU|A Chain A, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOU|B Chain B, Native Human Lysosomal Beta-Hexosaminidase Isoform B
pdb|1NOW|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NOW|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With (2r,3r,
4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride
(Galnac-Isofagomine)
pdb|1NP0|A Chain A, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|1NP0|B Chain B, Human Lysosomal Beta-Hexosaminidase Isoform B In Complex
With Intermediate Analogue Nag-Thiazoline
pdb|2GJX|B Chain B, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|C Chain C, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|F Chain F, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|G Chain G, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 174 bits (441), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 116/367 (31%), Positives = 167/367 (45%), Gaps = 90/367 (24%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
IL+DT+R++ + I KT+D MA NK N HWHI D QSFP++S +P L+ G+YS
Sbjct: 156 ILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSH 215
Query: 72 IYSREDIREIVHYGLVRGVHVIPELDAPAHV---GEGWNSIEKQKDELLVCFKKEPWTKF 128
+Y+ D+R ++ Y +RG+ V+PE D P H G+G QKD L C+ ++
Sbjct: 216 VYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKG------QKDLLTPCYSRQNKLD- 268
Query: 129 CVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDW 188
G +NP + Y L ++E++++F H+GGDEV CW I D+
Sbjct: 269 ----SFGPINPTLNTTYSFLTTFFKEISEVFPDQ---FIHLGGDEVEFKCWESNPKIQDF 321
Query: 189 MYAK-FG------------------AWVGEGNNWCSPYIGWQKVYDND------------ 217
M K FG A + +G+ I WQ+V+D+
Sbjct: 322 MRQKGFGTDFKKLESFYIQKVLDIIATINKGS------IVWQEVFDDKAKLAPGTIVEVW 375
Query: 218 -----------------PIKL-----LDQTS-------------LNISNNPELKSLIMGQ 242
P+ L LD S L+ + K L +G
Sbjct: 376 KDSAYPEELSRVTASGFPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGG 435
Query: 243 EAALWSEQADAATLDGRLWPRASAMAERLWSNP-ASNWRAAEYRFLHQRERLVEIGLAAE 301
EA LW E DA L RLWPRASA+ ERLWS+ + A R R R+VE G+AA+
Sbjct: 436 EACLWGEYVDATNLTPRLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQ 495
Query: 302 SIEPEWC 308
+ +C
Sbjct: 496 PLYAGYC 502
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 359 ATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
A + AN +G G ET SQL+ D Y + I D P + +R
Sbjct: 109 AVLKANRVWGALRGLETFSQLVYQDSYGTFTI--NESTIIDSPRFSHR 154
>pdb|2GK1|A Chain A, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|C Chain C, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|E Chain E, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GK1|G Chain G, X-Ray Crystal Structure Of Ngt-Bound Hexa
pdb|2GJX|A Chain A, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|D Chain D, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|E Chain E, Crystallographic Structure Of Human Beta-Hexosaminidase A
pdb|2GJX|H Chain H, Crystallographic Structure Of Human Beta-Hexosaminidase A
Length = 507
Score = 164 bits (415), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 112/368 (30%), Positives = 166/368 (45%), Gaps = 84/368 (22%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSS-E 70
+LLDT+R++ L +I T+D MA NKLN FHWH+ D SFP+ES +P L + G+Y+
Sbjct: 150 LLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVT 209
Query: 71 KIYSREDIREIVHYGLVRGVHVIPELDAPAHV---GEGWNSIEKQKDELLVCFK-KEPWT 126
IY+ +D++E++ Y +RG+ V+ E D P H G G + L C+ EP
Sbjct: 210 HIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGIPGL------LTPCYSGSEPSG 263
Query: 127 KFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSIT 186
F G +NP + YE + + E++ +F H+GGDEV+ CW I
Sbjct: 264 TF------GPVNPSLNNTYEFMSTFFLEVSSVFP---DFYLHLGGDEVDFTCWKSNPEIQ 314
Query: 187 DWMYAK-FG------------AWVGEGNNWCSPYIGWQKVYDND---------------- 217
D+M K FG + +++ Y+ WQ+V+DN
Sbjct: 315 DFMRKKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDI 374
Query: 218 PIKLLDQTS----------------------------------LNISNNPELKSLIMGQE 243
P+ + + L PE K+L++G E
Sbjct: 375 PVNYMKELELVTKAGFRALLSAPWYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGE 434
Query: 244 AALWSEQADAATLDGRLWPRASAMAERLWSNP-ASNWRAAEYRFLHQRERLVEIGLAAES 302
A +W E D L RLWPRA A+AERLWSN S+ A R H R L+ G+ A+
Sbjct: 435 ACMWGEYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQP 494
Query: 303 IEPEWCYQ 310
+ +C Q
Sbjct: 495 LNVGFCEQ 502
>pdb|3GH4|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12
pdb|3GH5|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Glcnac
pdb|3GH7|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Galnac
pdb|3SUR|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nag-Thiazoline.
pdb|3SUS|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With
Gal-Nag-Thiazoline
pdb|3SUT|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Pugnac
pdb|3SUU|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Gal-Pugnac
pdb|3SUV|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Dnj
pdb|3SUW|A Chain A, Crystal Structure Of Beta-Hexosaminidase From
Paenibacillus Sp. Ts12 In Complex With Nhac-Cas
Length = 525
Score = 81.6 bits (200), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 93/205 (45%), Gaps = 22/205 (10%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA----- 66
++LD AR+F+T+D +K+ ID + K+N FH H++D Q + E + +P L + G+
Sbjct: 187 LMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSKGQVG 246
Query: 67 YSSEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSI-EKQKDELLVCFKKEPW 125
Y++E ++IV Y R + VIPE+D P H S E D + +
Sbjct: 247 GGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGELNPDGKRKAMRTDTA 306
Query: 126 TKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSI 185
+ L P ++ Y+ + + E+ + S H+GGDE N S
Sbjct: 307 VGYST------LMPRAEITYQFVEDVISELAAI---SPSPYIHLGGDESN------ATSA 351
Query: 186 TDWMYAKFGAWVGEGNNWCSPYIGW 210
D+ Y FG N++ +GW
Sbjct: 352 ADYDYF-FGRVTAIANSYGKKVVGW 375
>pdb|3RCN|A Chain A, Crystal Structure Of Beta-N-Acetylhexosaminidase From
Arthrobacter Aurescens
Length = 543
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 140/345 (40%), Gaps = 80/345 (23%)
Query: 14 LDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK-- 71
LD AR+F DN+ + I+ A +KLN H H+TD Q + + +YP LT++GA+ E
Sbjct: 145 LDVARHFXPKDNVLRFIEVXAXHKLNVLHLHLTDDQGWRXQINRYPKLTETGAWRRESSL 204
Query: 72 ---------------IYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSI-EKQKDE 115
Y+++D+REIV + R + VIPE+D P H + E
Sbjct: 205 GSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGHSQAAIAAYPELGAGP 264
Query: 116 LLVCFKKEPWTKFCVEPPCGQLNPVS--------DRVYEV-------LGGLYEEMT---- 156
E WT++ + +++ S D V E+ LGG +T
Sbjct: 265 ADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVEIFPSPWISLGGDEVPLTQWQA 324
Query: 157 ---------DLFRTDLSGLFHMGGDEVNMNCWNHTKSITDWMY---------AKFGAWVG 198
+L D+SGL ++ ++ +H ++ + W A +W G
Sbjct: 325 SAQAQAKAAELGLDDVSGLHSWFVGQLALHLKHHGRATSVWDEIGDGGLPDGALVASWRG 384
Query: 199 EGNNWCSPYIGW-------QKVY--------DNDPIKLLDQTSLNI---------SNNPE 234
+ G+ K+Y D++P+ + T+L +
Sbjct: 385 YEGGIDALRKGYDVVXCPEHKLYLDHRQADGDDEPVPVGFVTTLQAVYEFEPLPGVEGTD 444
Query: 235 LKSLIMGQEAALWSEQADAA-TLDGRLWPRASAMAERLWSNPASN 278
++G +A +WSE D+ + +PR SA++E WSNPA
Sbjct: 445 FPGRLLGAQANIWSEHLDSPRRVQFAAFPRLSAISEVFWSNPAGR 489
>pdb|1QBB|A Chain A, Bacterial Chitobiase Complexed With Chitobiose (Dinag)
pdb|1QBA|A Chain A, Bacterial Chitobiase, Glycosyl Hydrolase Family 20
Length = 858
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 54/205 (26%), Positives = 85/205 (41%), Gaps = 46/205 (22%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
I LD ARNF+ D + + +D MA KLN FH+H++D + + E P LT+ G
Sbjct: 316 IFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHD 375
Query: 72 I--------------------YSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEK 111
+ +SR+D +I+ Y R + VIPE+D PAH S+E
Sbjct: 376 LSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEA 435
Query: 112 QKDELLVCFKKEPWTKFCVEPPCGQLNPVS---------------------DRVYEVLGG 150
+ +L K++ +F + P N S D+V +
Sbjct: 436 RYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQ 495
Query: 151 LYEEMTDLFRTDLSGLFHMGGDEVN 175
+++E +T +H GGDE
Sbjct: 496 MHKEAGQPIKT-----WHFGGDEAK 515
>pdb|1C7S|A Chain A, Beta-N-Acetylhexosaminidase Mutant D539a Complexed With
Di- N-Acetyl-Beta-D-Glucosamine (Chitobiase)
Length = 858
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
I LD ARNF+ D + + +D MA KLN FH+H++D + + E P LT+ G
Sbjct: 316 IFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHD 375
Query: 72 I--------------------YSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEK 111
+ +SR+D +I+ Y R + VIPE+D PAH S+E
Sbjct: 376 LSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEA 435
Query: 112 QKDELLVCFKKEPWTKF 128
+ +L K++ +F
Sbjct: 436 RYKKLHAAGKEQEANEF 452
>pdb|1C7T|A Chain A, Beta-N-Acetylhexosaminidase Mutant E540d Complexed With
Di- N Acetyl-D-Glucosamine (Chitobiase)
Length = 858
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 20/137 (14%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
I LD ARNF+ D + + +D MA KLN FH+H++D + + E P LT+ G
Sbjct: 316 IFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHD 375
Query: 72 I--------------------YSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEK 111
+ +SR+D +I+ Y R + VIPE+D PAH S+E
Sbjct: 376 LSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEA 435
Query: 112 QKDELLVCFKKEPWTKF 128
+ +L K++ +F
Sbjct: 436 RYKKLHAAGKEQEANEF 452
>pdb|1YHT|A Chain A, Crystal Structure Analysis Of Dispersin B
Length = 367
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 87/185 (47%), Gaps = 18/185 (9%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
++LD AR+FY+ + IK ID ++++ N+ H H +D +++ ES ++ +
Sbjct: 21 LMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDG 80
Query: 72 IY----------SREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFK 121
IY S + +I Y +G+ +IPELD+P H+ + + QKD + +
Sbjct: 81 IYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLV--QKDRGVKYLQ 138
Query: 122 KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNH 181
+ E + ++ + L E+ D+F D S FH+GGDE + ++
Sbjct: 139 GLKSRQVDDEIDITNADSIT-----FMQSLMSEVIDIF-GDTSQHFHIGGDEFGYSVESN 192
Query: 182 TKSIT 186
+ IT
Sbjct: 193 HEFIT 197
>pdb|1HP4|A Chain A, Crystal Structure Of Streptomyces Plicatus
Beta-N-Acetylhexosaminidase
pdb|1HP5|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase
Complexed With Intermediate Analouge Nag-Thiazoline
pdb|1JAK|A Chain A, Streptomyces Plicatus Beta-N-Acetylhexosaminidase In
Complex With (2r,
3r,4s,5r)-2-Acetamido-3,
4-Dihydroxy-5-Hydroxymethyl-Piperidinium Chloride (Ifg)
pdb|1M01|A Chain A, Wildtype Streptomyces Plicatus Beta-Hexosaminidase In
Complex With Product (Glcnac)
Length = 512
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 92/226 (40%), Gaps = 46/226 (20%)
Query: 13 LLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYS---- 68
+LD +R+F+ +D +K+ ID +A K N H H++D Q + +P L G +
Sbjct: 163 MLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGG 222
Query: 69 -SEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEP--- 124
Y++ + +EIV Y R + V+PE+D P H S + L C P
Sbjct: 223 GPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAE-----LNCDGVAPPLY 277
Query: 125 -WTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTK 183
TK C + D V +V+G L + H+GGDE H+
Sbjct: 278 TGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRY-------LHIGGDEA------HST 324
Query: 184 SITDW---------MYAKFGAWVGEGNNWCSPYIGWQKVYDNDPIK 220
D+ + AK+G V +GW ++ +P++
Sbjct: 325 PKADFVAFMKRVQPIVAKYGKTV----------VGWHQLAGAEPVE 360
>pdb|1M04|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313n)
In Complex With Product (Glcnac)
Length = 512
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 92/226 (40%), Gaps = 46/226 (20%)
Query: 13 LLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYS---- 68
+LD +R+F+ +D +K+ ID +A K N H H++D Q + +P L G +
Sbjct: 163 MLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGG 222
Query: 69 -SEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEP--- 124
Y++ + +EIV Y R + V+PE+D P H S + L C P
Sbjct: 223 GPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAE-----LNCDGVAPPLY 277
Query: 125 -WTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTK 183
TK C + D V +V+G L + H+GG+E H+
Sbjct: 278 TGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGRY-------LHIGGNEA------HST 324
Query: 184 SITDW---------MYAKFGAWVGEGNNWCSPYIGWQKVYDNDPIK 220
D+ + AK+G V +GW ++ +P++
Sbjct: 325 PKADFVAFMKRVQPIVAKYGKTV----------VGWHQLAGAEPVE 360
>pdb|1M03|A Chain A, Mutant Streptomyces Plicatus Beta-Hexosaminidase (D313a)
In Complex With Product (Glcnac)
Length = 512
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 13 LLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYS---- 68
+LD +R+F+ +D +K+ ID +A K N H H++D Q + +P L G +
Sbjct: 163 MLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVGG 222
Query: 69 -SEKIYSREDIREIVHYGLVRGVHVIPELDAPAHV 102
Y++ + +EIV Y R + V+PE+D P H
Sbjct: 223 GPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHT 257
>pdb|2YL5|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL5|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 87/219 (39%), Gaps = 57/219 (26%)
Query: 5 EVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHI---TDSQSFPFESRKYPTL 61
++ ++ I +D R ++TL+ +K+ +D ++L Y H+ D F + T+
Sbjct: 6 KLAKNKVISIDAGRKYFTLNQLKRIVD--KASELGYSDVHLLLGNDGLRFLLDDM---TI 60
Query: 62 TQSG-AYSSEKI-------------------YSREDIREIVHYGLVRGVHVIPELDAPAH 101
T +G Y+S+ + ++ ++ E++ Y + + +IP +++P H
Sbjct: 61 TANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGH 120
Query: 102 VGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEV--------LGGLYE 153
+ D +LV + K ++ P + VS ++ + L
Sbjct: 121 M-----------DAMLVAME-----KLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIG 164
Query: 154 EMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDWMYAK 192
+ D F + +F+ G DE N S W Y K
Sbjct: 165 KYMDFFAGK-TKIFNFGTDE----YANDATSAQGWYYLK 198
>pdb|2YL9|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YL9|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 457
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/219 (18%), Positives = 87/219 (39%), Gaps = 57/219 (26%)
Query: 5 EVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHI---TDSQSFPFESRKYPTL 61
++ ++ I +D R ++TL+ +K+ +D ++L Y H+ D F + T+
Sbjct: 23 KLAKNKVISIDAGRKYFTLNQLKRIVD--KASELGYSDVHLLLGNDGLRFLLDDM---TI 77
Query: 62 TQSG-AYSSEKI-------------------YSREDIREIVHYGLVRGVHVIPELDAPAH 101
T +G Y+S+ + ++ ++ E++ Y + + +IP +++P H
Sbjct: 78 TANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGH 137
Query: 102 VGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEV--------LGGLYE 153
+ D +LV + K ++ P + VS ++ + L
Sbjct: 138 M-----------DAMLVAME-----KLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIG 181
Query: 154 EMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDWMYAK 192
+ D F + +F+ G D+ N S W Y K
Sbjct: 182 KYMDFFAGK-TKIFNFGTDQ----YANDATSAQGWYYLK 215
>pdb|2YLA|A Chain A, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|B Chain B, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|C Chain C, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
pdb|2YLA|D Chain D, Inhibition Of The Pneumococcal Virulence Factor Strh And
Molecular Insights Into N-Glycan Recognition And
Hydrolysis
Length = 442
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 41/219 (18%), Positives = 87/219 (39%), Gaps = 57/219 (26%)
Query: 5 EVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHI---TDSQSFPFESRKYPTL 61
++ ++ I +D R ++TL+ +K+ +D ++L Y H+ D F + T+
Sbjct: 6 KLAKNKVISIDAGRKYFTLNQLKRIVD--KASELGYSDVHLLLGNDGLRFLLDDM---TI 60
Query: 62 TQSG-AYSSEKI-------------------YSREDIREIVHYGLVRGVHVIPELDAPAH 101
T +G Y+S+ + ++ ++ E++ Y + + +IP +++P H
Sbjct: 61 TANGKTYASDDVKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGH 120
Query: 102 VGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEV--------LGGLYE 153
+ D +LV + K ++ P + VS ++ + L
Sbjct: 121 M-----------DAMLVAME-----KLGIKNPQAHFDKVSKTTMDLKNEEAMNFVKALIG 164
Query: 154 EMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDWMYAK 192
+ D F + +F+ G D+ N S W Y K
Sbjct: 165 KYMDFFAGK-TKIFNFGTDQ----YANDATSAQGWYYLK 198
>pdb|4EM6|D Chain D, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|A Chain A, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|B Chain B, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
pdb|4EM6|C Chain C, The Structure Of Glucose-6-Phosphate Isomerase (Gpi) From
Brucella Melitensis
Length = 553
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 255 TLDGRLWPRASAMAERLWSNPASNWRAAEYRFLHQRERLV--EIGLAAESIEPEWCYQNE 312
TLDG+ P + +W P +N + A ++ LHQ + E +AA+ EP +Q+E
Sbjct: 364 TLDGK--PVSGPTGPVVWGEPGTNGQHAFFQLLHQGTDTIPLEFIVAAKGHEPTLDHQHE 421
Query: 313 GLCGSVI 319
L + +
Sbjct: 422 MLMANCL 428
>pdb|2WU8|A Chain A, Structural Studies Of Phosphoglucose Isomerase From
Mycobacterium Tuberculosis H37rv
Length = 549
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 262 PRASAMAERLWSNPASNWRAAEYRFLHQRERLV 294
P ++ E W P +N + A Y+ LHQ RLV
Sbjct: 363 PVSADTGEIFWGEPGTNGQHAFYQLLHQGTRLV 395
>pdb|4AU0|A Chain A, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
6-chloro-4- Methylumbelliferyl-beta-cellobioside
pdb|4AU0|B Chain B, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
6-chloro-4- Methylumbelliferyl-beta-cellobioside
pdb|4AX6|A Chain A, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
6-chloro-4-phenylumbelliferyl-beta-cellobioside
pdb|4AX6|B Chain B, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
6-chloro-4-phenylumbelliferyl-beta-cellobioside
pdb|4AX7|A Chain A, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
4-methylumbelliferyl-beta-d-cellobioside
pdb|4AX7|B Chain B, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
4-methylumbelliferyl-beta-d-cellobioside
pdb|4AX7|C Chain C, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
4-methylumbelliferyl-beta-d-cellobioside
pdb|4AX7|D Chain D, Hypocrea Jecorina Cel6a D221a Mutant Soaked With
4-methylumbelliferyl-beta-d-cellobioside
Length = 363
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIY 73
N Y + + + G+A N NY W+IT P+ TQ A +EK+Y
Sbjct: 201 NVYKNASSPRALRGLATNVANYNGWNITSP----------PSYTQGNAVYNEKLY 245
>pdb|1HGY|A Chain A, Cel6a D221a Mutant
pdb|1HGY|B Chain B, Cel6a D221a Mutant
Length = 365
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIY 73
N Y + + + G+A N NY W+IT P+ TQ A +EK+Y
Sbjct: 203 NVYKNASSPRALRGLATNVANYNGWNITSP----------PSYTQGNAVYNEKLY 247
>pdb|1HGW|A Chain A, Cel6a D175a Mutant
pdb|1HGW|B Chain B, Cel6a D175a Mutant
Length = 365
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIY 73
N Y + + + G+A N NY W+IT P+ TQ A +EK+Y
Sbjct: 203 NVYKNASSPRALRGLATNVANYNGWNITSP----------PSYTQGNAVYNEKLY 247
>pdb|1QK0|A Chain A, Cel6a In Complex With M-Iodobenzyl Beta-D-Glucopyranosyl-
Beta(1,4)-D-Xylopyranoside
pdb|1QK0|B Chain B, Cel6a In Complex With M-Iodobenzyl Beta-D-Glucopyranosyl-
Beta(1,4)-D-Xylopyranoside
pdb|1QK2|A Chain A, Wild Type Cel6a With A Non-Hydrolysable Cellotetraose
pdb|1QK2|B Chain B, Wild Type Cel6a With A Non-Hydrolysable Cellotetraose
Length = 363
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIY 73
N Y + + + G+A N NY W+IT P+ TQ A +EK+Y
Sbjct: 201 NVYKNASSPRALRGLATNVANYNGWNITSP----------PSYTQGNAVYNEKLY 245
>pdb|3CBH|A Chain A, Three-Dimensional Structure Of Cellobiohydrolase From
Trichoderma Reesei
Length = 365
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIY 73
N Y + + + G+A N NY W+IT P+ TQ A +EK+Y
Sbjct: 203 NVYKNASSPRALRGLATNVANYNGWNITSP----------PSYTQGNAVYNEKLY 247
>pdb|1CB2|A Chain A, Cellobiohydrolase Ii, Catalytic Domain, Mutant Y169f
pdb|1CB2|B Chain B, Cellobiohydrolase Ii, Catalytic Domain, Mutant Y169f
pdb|1QJW|A Chain A, Cel6a (Y169f) With A Non-Hydrolysable Cellotetraose
pdb|1QJW|B Chain B, Cel6a (Y169f) With A Non-Hydrolysable Cellotetraose
Length = 365
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIY 73
N Y + + + G+A N NY W+IT P+ TQ A +EK+Y
Sbjct: 203 NVYKNASSPRALRGLATNVANYNGWNITSP----------PSYTQGNAVYNEKLY 247
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,179,637
Number of Sequences: 62578
Number of extensions: 580691
Number of successful extensions: 1109
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1035
Number of HSP's gapped (non-prelim): 60
length of query: 406
length of database: 14,973,337
effective HSP length: 101
effective length of query: 305
effective length of database: 8,652,959
effective search space: 2639152495
effective search space used: 2639152495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)