Query psy13745
Match_columns 406
No_of_seqs 322 out of 1807
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 19:26:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2499|consensus 100.0 3.4E-83 7.4E-88 635.0 22.6 297 1-316 175-542 (542)
2 cd06562 GH20_HexA_HexB-like Be 100.0 2.1E-77 4.5E-82 598.6 24.4 275 7-297 1-348 (348)
3 cd06563 GH20_chitobiase-like T 100.0 2.5E-73 5.4E-78 571.3 21.2 264 7-286 1-357 (357)
4 cd06570 GH20_chitobiase-like_1 100.0 3.6E-72 7.7E-77 551.4 21.1 268 7-286 1-311 (311)
5 cd06569 GH20_Sm-chitobiase-lik 100.0 5.9E-72 1.3E-76 573.6 22.2 275 3-282 1-424 (445)
6 cd06568 GH20_SpHex_like A subg 100.0 4.8E-71 1E-75 548.2 20.5 259 7-286 1-329 (329)
7 cd02742 GH20_hexosaminidase Be 100.0 4.2E-63 9E-68 487.1 18.7 244 9-273 1-303 (303)
8 PF00728 Glyco_hydro_20: Glyco 100.0 5E-64 1.1E-68 501.9 10.8 257 7-274 1-350 (351)
9 COG3525 Chb N-acetyl-beta-hexo 100.0 3E-61 6.6E-66 493.5 16.1 346 1-369 255-705 (732)
10 cd06564 GH20_DspB_LnbB-like Gl 100.0 1.7E-58 3.7E-63 458.8 19.5 247 8-274 1-326 (326)
11 cd06565 GH20_GcnA-like Glycosy 100.0 3.1E-39 6.7E-44 317.3 15.9 144 9-177 1-145 (301)
12 KOG2499|consensus 99.4 1.9E-13 4.1E-18 137.7 3.3 71 331-406 111-184 (542)
13 PF14845 Glycohydro_20b2: beta 98.3 7.8E-08 1.7E-12 82.9 -1.0 34 346-379 92-128 (128)
14 PF02638 DUF187: Glycosyl hydr 97.3 0.0037 8.1E-08 62.1 13.4 151 8-169 1-160 (311)
15 PF02838 Glyco_hydro_20b: Glyc 97.2 8.5E-05 1.8E-09 63.3 -0.3 49 348-400 75-124 (124)
16 PF13287 Fn3_assoc: Fn3 associ 97.1 0.00089 1.9E-08 50.0 4.7 53 319-378 2-57 (59)
17 COG3525 Chb N-acetyl-beta-hexo 96.6 0.00081 1.8E-08 71.4 1.1 65 336-406 199-264 (732)
18 PF13290 CHB_HEX_C_1: Chitobia 96.5 0.0064 1.4E-07 46.6 5.3 48 317-371 11-61 (67)
19 COG1649 Uncharacterized protei 96.3 0.079 1.7E-06 54.5 13.5 151 7-162 45-201 (418)
20 PF03174 CHB_HEX_C: Chitobiase 96.0 0.0072 1.6E-07 47.0 3.3 55 316-377 16-73 (75)
21 PF10566 Glyco_hydro_97: Glyco 95.1 0.054 1.2E-06 52.8 6.7 120 19-157 27-148 (273)
22 PF02449 Glyco_hydro_42: Beta- 94.3 0.11 2.4E-06 52.7 7.0 167 21-214 7-186 (374)
23 PF13200 DUF4015: Putative gly 94.0 0.45 9.8E-06 47.4 10.4 122 23-158 12-136 (316)
24 cd02847 Chitobiase_C_term Chit 93.7 0.2 4.4E-06 39.5 5.9 68 292-368 2-69 (78)
25 PF14871 GHL6: Hypothetical gl 93.0 1.1 2.3E-05 39.0 9.9 123 27-162 3-126 (132)
26 smart00642 Aamy Alpha-amylase 91.2 0.76 1.6E-05 41.4 7.2 75 22-104 17-97 (166)
27 TIGR01515 branching_enzym alph 91.2 2.3 4.9E-05 46.3 12.1 119 26-160 159-288 (613)
28 PRK14706 glycogen branching en 89.1 4 8.7E-05 44.7 11.7 123 20-160 163-299 (639)
29 PRK12313 glycogen branching en 88.9 5 0.00011 43.8 12.4 124 21-160 167-302 (633)
30 PLN02960 alpha-amylase 87.5 5.4 0.00012 44.9 11.5 124 21-160 413-549 (897)
31 PRK10933 trehalose-6-phosphate 87.2 7.6 0.00016 41.8 12.3 75 22-104 31-108 (551)
32 PRK14705 glycogen branching en 86.0 7 0.00015 45.8 11.8 119 26-160 768-897 (1224)
33 PF00150 Cellulase: Cellulase 85.9 1.6 3.5E-05 41.5 5.8 77 7-98 8-84 (281)
34 TIGR02402 trehalose_TreZ malto 85.7 9.3 0.0002 41.0 12.0 72 23-103 110-186 (542)
35 TIGR02403 trehalose_treC alpha 85.7 2.6 5.5E-05 45.2 7.8 74 22-103 25-101 (543)
36 PRK05402 glycogen branching en 85.3 9.4 0.0002 42.5 12.1 126 20-160 261-397 (726)
37 cd06594 GH31_glucosidase_YihQ 84.8 5.7 0.00012 39.5 9.3 141 5-155 7-151 (317)
38 COG0296 GlgB 1,4-alpha-glucan 84.5 9.4 0.0002 41.6 11.3 119 23-160 164-296 (628)
39 TIGR02100 glgX_debranch glycog 83.8 11 0.00023 41.8 11.6 123 29-160 189-334 (688)
40 cd06593 GH31_xylosidase_YicI Y 83.0 12 0.00026 36.8 10.7 125 19-157 19-147 (308)
41 PLN02447 1,4-alpha-glucan-bran 82.2 15 0.00032 41.1 11.8 119 26-160 253-383 (758)
42 PRK12568 glycogen branching en 81.6 17 0.00036 40.5 12.0 125 20-160 265-401 (730)
43 TIGR02456 treS_nterm trehalose 81.4 5.3 0.00011 42.7 8.0 74 22-104 26-103 (539)
44 PRK10785 maltodextrin glucosid 81.0 5.4 0.00012 43.3 8.0 79 18-104 171-253 (598)
45 PF00128 Alpha-amylase: Alpha 80.3 1.7 3.6E-05 41.7 3.4 75 23-105 3-80 (316)
46 PF01055 Glyco_hydro_31: Glyco 80.0 8 0.00017 40.0 8.6 140 5-160 26-170 (441)
47 PRK14511 maltooligosyl trehalo 79.7 6.1 0.00013 44.6 7.9 76 21-104 17-96 (879)
48 PLN02784 alpha-amylase 78.2 9.4 0.0002 43.0 8.7 86 10-104 507-595 (894)
49 TIGR02104 pulA_typeI pullulana 77.0 20 0.00043 39.0 10.8 132 24-160 164-312 (605)
50 TIGR02401 trehalose_TreY malto 76.7 9.4 0.0002 42.9 8.3 77 20-104 12-92 (825)
51 PRK03705 glycogen debranching 76.5 16 0.00035 40.2 10.0 120 29-160 184-329 (658)
52 PRK09441 cytoplasmic alpha-amy 76.4 11 0.00024 39.6 8.5 79 23-104 21-108 (479)
53 PLN02361 alpha-amylase 75.4 8.8 0.00019 39.6 7.2 72 24-103 29-102 (401)
54 PRK14510 putative bifunctional 74.9 31 0.00067 40.8 12.2 122 28-160 191-335 (1221)
55 PF02065 Melibiase: Melibiase; 74.1 26 0.00057 36.0 10.3 126 21-162 55-185 (394)
56 PRK10658 putative alpha-glucos 73.7 23 0.00049 39.1 10.2 137 5-157 264-406 (665)
57 cd06592 GH31_glucosidase_KIAA1 73.6 23 0.0005 34.9 9.5 122 20-156 26-151 (303)
58 TIGR02102 pullulan_Gpos pullul 72.8 51 0.0011 38.6 13.0 125 23-160 479-635 (1111)
59 PF13199 Glyco_hydro_66: Glyco 71.4 31 0.00066 37.3 10.3 161 2-169 97-264 (559)
60 PLN00196 alpha-amylase; Provis 70.0 16 0.00034 38.1 7.6 71 23-104 43-119 (428)
61 KOG0259|consensus 69.7 4.5 9.8E-05 41.2 3.4 79 24-103 137-245 (447)
62 PLN03244 alpha-amylase; Provis 67.3 19 0.0004 40.4 7.7 80 73-160 438-524 (872)
63 cd06598 GH31_transferase_CtsZ 65.4 27 0.00059 34.6 8.0 141 5-156 7-151 (317)
64 TIGR03234 OH-pyruv-isom hydrox 64.8 4.8 0.0001 38.2 2.4 74 10-96 70-143 (254)
65 KOG0470|consensus 62.8 8.2 0.00018 42.4 3.9 120 26-158 257-393 (757)
66 PF07555 NAGidase: beta-N-acet 61.7 13 0.00027 37.1 4.8 63 20-96 11-76 (306)
67 KOG0256|consensus 61.1 43 0.00093 34.7 8.4 66 12-94 198-264 (471)
68 PF01261 AP_endonuc_2: Xylose 60.0 26 0.00057 31.3 6.3 66 23-99 70-135 (213)
69 PF05913 DUF871: Bacterial pro 57.4 27 0.00058 35.5 6.4 64 11-97 3-68 (357)
70 PTZ00372 endonuclease 4-like p 56.6 92 0.002 32.3 10.2 61 11-94 134-194 (413)
71 COG0436 Aspartate/tyrosine/aro 55.7 16 0.00035 37.5 4.6 66 29-94 126-201 (393)
72 PRK10426 alpha-glucosidase; Pr 55.5 63 0.0014 35.5 9.3 141 5-154 205-347 (635)
73 PRK10076 pyruvate formate lyas 55.0 38 0.00082 31.8 6.6 68 22-93 143-210 (213)
74 PRK14507 putative bifunctional 54.5 37 0.0008 41.3 7.7 76 20-103 754-833 (1693)
75 PF01212 Beta_elim_lyase: Beta 54.4 44 0.00095 32.8 7.2 65 12-92 96-161 (290)
76 PRK01060 endonuclease IV; Prov 54.3 54 0.0012 31.4 7.8 59 11-92 5-63 (281)
77 PRK05301 pyrroloquinoline quin 53.6 36 0.00077 34.5 6.7 58 18-101 43-100 (378)
78 PLN00145 tyrosine/nicotianamin 52.3 18 0.00039 37.4 4.3 62 32-93 157-227 (430)
79 TIGR02455 TreS_stutzeri trehal 52.0 35 0.00076 37.4 6.4 70 27-103 77-156 (688)
80 cd06600 GH31_MGAM-like This fa 51.8 1.2E+02 0.0025 30.1 9.9 124 19-156 19-146 (317)
81 PLN00143 tyrosine/nicotianamin 51.2 20 0.00044 36.6 4.5 61 33-93 138-207 (409)
82 cd06591 GH31_xylosidase_XylS X 51.1 1.1E+02 0.0023 30.4 9.5 121 19-154 19-143 (319)
83 TIGR02109 PQQ_syn_pqqE coenzym 49.6 40 0.00088 33.7 6.3 59 18-102 34-92 (358)
84 PF13204 DUF4038: Protein of u 49.3 49 0.0011 32.5 6.6 70 22-93 28-105 (289)
85 TIGR01182 eda Entner-Doudoroff 48.8 27 0.00059 32.6 4.5 84 21-108 17-120 (204)
86 PRK14582 pgaB outer membrane N 48.6 4.2E+02 0.0091 29.4 14.9 166 8-193 313-489 (671)
87 cd06602 GH31_MGAM_SI_GAA This 48.3 2.3E+02 0.005 28.3 11.5 125 19-160 19-155 (339)
88 PRK06015 keto-hydroxyglutarate 46.9 33 0.00072 31.9 4.8 84 21-108 13-116 (201)
89 PRK09276 LL-diaminopimelate am 46.6 28 0.00061 34.9 4.6 61 33-93 134-203 (385)
90 PRK09147 succinyldiaminopimela 46.5 22 0.00048 36.0 3.9 63 31-93 132-203 (396)
91 cd06604 GH31_glucosidase_II_Ma 45.2 1.4E+02 0.003 29.8 9.3 125 19-156 19-146 (339)
92 PRK09856 fructoselysine 3-epim 44.6 58 0.0013 31.0 6.3 64 23-99 89-152 (275)
93 cd06603 GH31_GANC_GANAB_alpha 44.2 1.5E+02 0.0033 29.6 9.4 126 18-157 18-147 (339)
94 PRK06348 aspartate aminotransf 44.1 28 0.0006 35.1 4.1 24 70-93 176-199 (384)
95 TIGR03537 DapC succinyldiamino 43.6 26 0.00056 34.8 3.8 61 33-93 104-173 (350)
96 PLN02187 rooty/superroot1 42.7 34 0.00073 35.8 4.6 62 32-93 171-241 (462)
97 PF02679 ComA: (2R)-phospho-3- 42.4 36 0.00078 32.7 4.3 65 4-94 8-72 (244)
98 PLN02877 alpha-amylase/limit d 41.8 75 0.0016 36.6 7.3 28 75-103 465-492 (970)
99 PTZ00377 alanine aminotransfer 41.8 29 0.00062 36.4 3.9 65 29-93 176-255 (481)
100 PRK06552 keto-hydroxyglutarate 41.7 41 0.0009 31.5 4.6 83 21-107 22-127 (213)
101 COG0366 AmyA Glycosidases [Car 41.4 74 0.0016 32.9 6.9 69 23-103 28-103 (505)
102 TIGR03586 PseI pseudaminic aci 41.3 71 0.0015 32.1 6.4 84 16-103 8-104 (327)
103 PF14488 DUF4434: Domain of un 41.3 2.2E+02 0.0047 25.5 9.0 78 11-97 3-86 (166)
104 TIGR00587 nfo apurinic endonuc 41.2 2.4E+02 0.0053 27.1 10.1 60 11-93 4-63 (274)
105 PLN02450 1-aminocyclopropane-1 41.0 22 0.00049 37.2 3.0 59 35-93 155-228 (468)
106 COG1306 Uncharacterized conser 40.8 1.1E+02 0.0025 30.4 7.4 125 23-157 76-207 (400)
107 PLN02656 tyrosine transaminase 40.4 37 0.00079 34.7 4.4 59 35-93 139-206 (409)
108 PLN02368 alanine transaminase 40.3 28 0.00062 35.8 3.6 63 31-93 170-247 (407)
109 PTZ00372 endonuclease 4-like p 40.2 74 0.0016 33.1 6.5 81 9-96 302-391 (413)
110 COG0134 TrpC Indole-3-glycerol 40.1 33 0.00072 33.2 3.7 93 71-193 138-230 (254)
111 smart00518 AP2Ec AP endonuclea 40.0 97 0.0021 29.4 7.0 60 11-93 3-62 (273)
112 PRK07366 succinyldiaminopimela 39.8 35 0.00077 34.3 4.1 64 30-93 130-202 (388)
113 COG1168 MalY Bifunctional PLP- 39.6 27 0.00058 35.7 3.1 35 70-104 172-211 (388)
114 TIGR03538 DapC_gpp succinyldia 39.6 29 0.00064 35.0 3.5 61 33-93 133-202 (393)
115 PRK05718 keto-hydroxyglutarate 38.8 48 0.001 31.1 4.5 83 21-107 24-126 (212)
116 PRK07114 keto-hydroxyglutarate 38.7 57 0.0012 30.9 5.0 83 21-107 24-130 (222)
117 PRK07681 aspartate aminotransf 38.4 40 0.00087 34.1 4.3 64 30-93 131-203 (399)
118 PLN02231 alanine transaminase 38.3 44 0.00094 35.8 4.7 65 29-93 229-308 (534)
119 PRK09265 aminotransferase AlaT 38.1 44 0.00096 33.9 4.6 65 29-93 132-205 (404)
120 cd07201 cPLA2_Grp-IVB-IVD-IVE- 38.1 50 0.0011 35.4 4.9 53 42-99 372-433 (541)
121 PRK09505 malS alpha-amylase; R 37.9 81 0.0018 35.0 6.7 80 23-103 229-318 (683)
122 COG2100 Predicted Fe-S oxidore 37.6 89 0.0019 31.5 6.2 51 16-89 234-284 (414)
123 TIGR03849 arch_ComA phosphosul 37.0 69 0.0015 30.7 5.3 109 12-153 3-111 (237)
124 PRK13355 bifunctional HTH-doma 36.6 46 0.001 35.2 4.6 63 31-93 247-318 (517)
125 PRK07683 aminotransferase A; V 36.4 45 0.00098 33.6 4.3 61 32-93 129-198 (387)
126 PRK05764 aspartate aminotransf 36.4 52 0.0011 33.0 4.7 62 32-93 131-201 (393)
127 cd00452 KDPG_aldolase KDPG and 36.1 39 0.00084 30.8 3.4 134 22-193 14-165 (190)
128 TIGR03540 DapC_direct LL-diami 36.1 47 0.001 33.3 4.3 61 33-93 132-201 (383)
129 PF01565 FAD_binding_4: FAD bi 36.0 33 0.00071 29.1 2.8 22 74-95 9-30 (139)
130 COG1820 NagA N-acetylglucosami 36.0 40 0.00086 34.5 3.7 67 22-99 99-176 (380)
131 PLN02607 1-aminocyclopropane-1 35.9 1.8E+02 0.0038 30.4 8.7 24 70-93 214-237 (447)
132 PRK14465 ribosomal RNA large s 35.8 95 0.002 31.4 6.4 66 3-89 219-284 (342)
133 PF00155 Aminotran_1_2: Aminot 35.8 46 0.001 32.8 4.2 65 29-93 106-185 (363)
134 TIGR01866 cas_Csn2 CRISPR-asso 35.6 91 0.002 29.4 5.8 63 8-93 133-195 (216)
135 TIGR00542 hxl6Piso_put hexulos 35.2 40 0.00086 32.4 3.5 61 23-96 93-153 (279)
136 PRK09082 methionine aminotrans 35.1 53 0.0012 33.1 4.6 63 30-93 129-200 (386)
137 PRK09257 aromatic amino acid a 34.9 45 0.00097 33.8 4.0 65 29-93 133-209 (396)
138 PF09183 DUF1947: Domain of un 34.6 25 0.00054 26.7 1.5 23 17-39 1-24 (65)
139 PRK07324 transaminase; Validat 34.0 69 0.0015 32.2 5.1 65 30-94 118-191 (373)
140 PRK02308 uvsE putative UV dama 34.0 2.8E+02 0.006 27.5 9.2 42 51-93 65-108 (303)
141 PF11080 DUF2622: Protein of u 34.0 1.2E+02 0.0025 25.0 5.4 66 23-98 20-85 (96)
142 PRK08068 transaminase; Reviewe 32.3 56 0.0012 32.9 4.2 24 70-93 181-204 (389)
143 PRK05839 hypothetical protein; 32.3 1.1E+02 0.0025 30.6 6.4 64 29-93 122-192 (374)
144 PRK07337 aminotransferase; Val 31.9 65 0.0014 32.4 4.5 62 32-93 130-200 (388)
145 PRK08960 hypothetical protein; 31.5 60 0.0013 32.7 4.3 24 70-93 179-202 (387)
146 PRK06290 aspartate aminotransf 31.0 60 0.0013 33.2 4.2 64 30-93 144-216 (410)
147 PLN02376 1-aminocyclopropane-1 30.6 47 0.001 35.2 3.4 62 32-93 159-236 (496)
148 KOG0462|consensus 30.0 35 0.00075 36.7 2.2 32 73-104 91-138 (650)
149 PRK11145 pflA pyruvate formate 29.5 1.8E+02 0.0038 27.3 6.9 23 71-93 223-245 (246)
150 PTZ00433 tyrosine aminotransfe 29.2 65 0.0014 32.8 4.1 65 29-93 141-214 (412)
151 COG1523 PulA Type II secretory 29.2 3.7E+02 0.0081 30.0 10.0 116 30-157 206-349 (697)
152 PRK09989 hypothetical protein; 29.0 72 0.0016 30.2 4.1 80 9-108 172-253 (258)
153 PRK13957 indole-3-glycerol-pho 28.8 53 0.0012 31.6 3.1 36 71-106 133-168 (247)
154 PF13380 CoA_binding_2: CoA bi 28.7 44 0.00095 28.0 2.3 51 14-93 56-106 (116)
155 PRK01060 endonuclease IV; Prov 28.6 43 0.00093 32.1 2.5 40 10-49 174-219 (281)
156 COG3589 Uncharacterized conser 28.6 1.4E+02 0.0031 30.1 6.0 67 10-97 4-70 (360)
157 COG1313 PflX Uncharacterized F 28.4 1.1E+02 0.0023 30.4 5.1 30 57-94 304-333 (335)
158 PRK09275 aspartate aminotransf 28.2 59 0.0013 34.9 3.6 61 33-93 209-280 (527)
159 COG1217 TypA Predicted membran 28.0 28 0.0006 36.7 1.1 22 83-104 47-81 (603)
160 PF14701 hDGE_amylase: glucano 27.9 1.8E+02 0.0039 30.4 6.9 80 22-103 20-103 (423)
161 PRK02227 hypothetical protein; 27.4 82 0.0018 30.2 4.1 31 8-38 144-181 (238)
162 PLN02672 methionine S-methyltr 27.4 81 0.0017 36.9 4.7 65 29-93 791-866 (1082)
163 PF01301 Glyco_hydro_35: Glyco 27.4 97 0.0021 30.9 4.8 70 21-103 21-90 (319)
164 PRK07590 L,L-diaminopimelate a 27.2 1.4E+02 0.003 30.4 6.0 24 70-93 190-213 (409)
165 PRK08056 threonine-phosphate d 27.1 1.7E+02 0.0037 29.0 6.6 65 29-93 107-179 (356)
166 COG2984 ABC-type uncharacteriz 26.3 64 0.0014 32.3 3.2 37 59-95 157-194 (322)
167 COG2008 GLY1 Threonine aldolas 26.1 52 0.0011 33.2 2.6 23 70-92 144-166 (342)
168 PF13394 Fer4_14: 4Fe-4S singl 26.1 1E+02 0.0022 25.1 4.1 57 18-93 26-84 (119)
169 TIGR02668 moaA_archaeal probab 25.7 1.6E+02 0.0035 28.5 6.0 59 18-101 37-95 (302)
170 PRK06302 acetyl-CoA carboxylas 25.5 84 0.0018 27.9 3.6 33 22-57 2-34 (155)
171 KOG0258|consensus 25.3 2.7E+02 0.0059 28.9 7.4 25 70-94 229-253 (475)
172 TIGR02635 RhaI_grampos L-rhamn 25.3 85 0.0019 32.2 4.0 35 11-47 207-241 (378)
173 TIGR00036 dapB dihydrodipicoli 25.0 2.4E+02 0.0051 27.2 6.9 21 73-93 102-122 (266)
174 KOG0464|consensus 25.0 50 0.0011 34.3 2.2 30 75-104 73-115 (753)
175 TIGR00190 thiC thiamine biosyn 24.9 53 0.0011 33.9 2.4 26 20-45 136-161 (423)
176 cd07937 DRE_TIM_PC_TC_5S Pyruv 24.7 3.2E+02 0.0069 26.5 7.8 24 75-98 117-140 (275)
177 PRK07550 hypothetical protein; 24.7 91 0.002 31.3 4.1 62 32-93 130-200 (386)
178 TIGR01264 tyr_amTase_E tyrosin 24.7 94 0.002 31.4 4.3 24 70-93 182-205 (401)
179 smart00518 AP2Ec AP endonuclea 24.6 2.7E+02 0.0059 26.3 7.3 85 8-98 166-258 (273)
180 KOG3257|consensus 24.2 47 0.001 29.7 1.7 19 78-96 141-159 (168)
181 PLN02951 Molybderin biosynthes 24.1 2.3E+02 0.0051 28.8 7.0 60 18-102 87-147 (373)
182 PF10141 ssDNA-exonuc_C: Singl 24.1 5.6E+02 0.012 23.4 10.2 122 11-191 55-176 (195)
183 PF14542 Acetyltransf_CG: GCN5 24.0 63 0.0014 25.1 2.2 25 71-95 37-61 (78)
184 PRK08363 alanine aminotransfer 24.0 1.1E+02 0.0023 30.9 4.6 62 32-93 133-203 (398)
185 cd01299 Met_dep_hydrolase_A Me 23.8 3.2E+02 0.0069 26.7 7.8 63 23-97 119-181 (342)
186 PF03102 NeuB: NeuB family; I 23.7 66 0.0014 30.9 2.7 22 72-93 52-73 (241)
187 PRK13209 L-xylulose 5-phosphat 22.7 1.1E+02 0.0025 29.1 4.2 61 23-96 98-158 (283)
188 PF02836 Glyco_hydro_2_C: Glyc 22.7 1.2E+02 0.0026 29.4 4.5 55 20-103 32-86 (298)
189 PF04476 DUF556: Protein of un 22.5 1.1E+02 0.0024 29.2 3.9 31 8-38 144-181 (235)
190 cd09013 BphC-JF8_N_like N-term 22.5 87 0.0019 25.4 3.0 33 72-104 70-102 (121)
191 PRK13210 putative L-xylulose 5 22.4 2.2E+02 0.0048 27.0 6.2 61 25-102 17-77 (284)
192 COG1874 LacA Beta-galactosidas 22.2 1.1E+03 0.024 26.2 12.8 151 21-194 27-184 (673)
193 cd06808 PLPDE_III Type III Pyr 22.2 2.8E+02 0.0061 24.8 6.6 36 11-46 110-152 (211)
194 TIGR03569 NeuB_NnaB N-acetylne 22.0 2.2E+02 0.0048 28.6 6.2 84 16-103 7-103 (329)
195 COG1082 IolE Sugar phosphate i 21.9 88 0.0019 29.5 3.2 40 9-51 171-210 (274)
196 TIGR01265 tyr_nico_aTase tyros 21.8 1.2E+02 0.0025 30.8 4.3 24 70-93 183-206 (403)
197 PLN02763 hydrolase, hydrolyzin 21.7 5.7E+02 0.012 29.8 9.9 124 19-157 196-324 (978)
198 COG0826 Collagenase and relate 21.6 1E+02 0.0022 31.2 3.7 34 71-104 44-77 (347)
199 cd00019 AP2Ec AP endonuclease 21.6 75 0.0016 30.4 2.7 60 23-96 84-143 (279)
200 TIGR00387 glcD glycolate oxida 21.3 72 0.0016 32.8 2.7 27 74-102 6-32 (413)
201 PRK14335 (dimethylallyl)adenos 21.3 1.4E+02 0.003 31.3 4.8 24 71-94 288-313 (455)
202 TIGR02103 pullul_strch alpha-1 21.2 2.2E+02 0.0048 32.7 6.6 28 76-104 404-431 (898)
203 PRK05942 aspartate aminotransf 20.9 85 0.0018 31.7 3.0 24 70-93 184-207 (394)
204 COG3049 Penicillin V acylase a 20.9 79 0.0017 31.9 2.7 37 19-55 132-177 (353)
205 COG0277 GlcD FAD/FMN-containin 20.8 76 0.0016 32.6 2.7 26 72-97 38-63 (459)
206 PRK09856 fructoselysine 3-epim 20.8 93 0.002 29.6 3.1 39 9-50 175-213 (275)
207 PRK04296 thymidine kinase; Pro 20.6 91 0.002 28.3 2.9 25 71-95 88-112 (190)
208 PRK13210 putative L-xylulose 5 20.5 1.4E+02 0.003 28.4 4.3 61 23-96 93-153 (284)
209 PF02679 ComA: (2R)-phospho-3- 20.4 2E+02 0.0043 27.7 5.2 26 72-97 109-134 (244)
210 PRK14455 ribosomal RNA large s 20.3 2.1E+02 0.0046 28.9 5.7 14 74-87 276-289 (356)
211 KOG2550|consensus 20.2 1.8E+02 0.0039 30.3 5.0 80 23-108 249-375 (503)
212 TIGR00531 BCCP acetyl-CoA carb 20.1 1.2E+02 0.0026 26.9 3.5 33 22-57 2-34 (156)
No 1
>KOG2499|consensus
Probab=100.00 E-value=3.4e-83 Score=634.96 Aligned_cols=297 Identities=43% Similarity=0.863 Sum_probs=266.5
Q ss_pred CcccCCCCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHH
Q psy13745 1 MSDIEVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIRE 80 (406)
Q Consensus 1 I~D~P~~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~ 80 (406)
|+|+|+|+|||+|||+||||+|++.||++||.||++||||||||++|+|+||+|++++|+|..+|||+++..||++|+.+
T Consensus 175 I~D~PrF~hRGlLlDTSRhylpv~~IkrtLeaMa~nKLNVlHWHivDs~SFPle~~~~PeL~~kGaYs~~~vYT~eDv~e 254 (542)
T KOG2499|consen 175 IQDKPRFGHRGLLLDTSRHYLPVKVIKRTLEAMAANKLNVLHWHIVDSQSFPLESPTFPELHRKGAYSPRHVYTREDVSE 254 (542)
T ss_pred EeccCCCcccceEEecccceecHHHHHHHHHHHHhhhhceeEEEeecCCCCccccCCchhhhhcCCCCcceeecHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 81 IVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 81 lv~yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
||+||+.|||+|+||||+|||++. |+.+ ++. ....+|+.+|+++++++|||+++.||+|+++++.||.+.||
T Consensus 255 vV~yarlRGIRVlpEfD~PgHt~s-Wg~g----~~~---fl~p~~~~~~~~~~~gplnP~~n~tydvls~i~~dv~evFp 326 (542)
T KOG2499|consen 255 VVEYARLRGIRVLPEFDTPGHTGS-WGPG----YPD---FLTPCWSSFEVQPPFGPLNPTNNHTYDVLSEIFEDVSEVFP 326 (542)
T ss_pred HHHHHHhccceeeecccCCccccc-ccCC----CCc---ccCCcccccccCCCCcCCCCCchhHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999997 7532 233 22356788899999999999999999999999999999999
Q ss_pred CCCCceEEecCCccccccccCChHHHHHHHh-cc---------------------------------------------c
Q psy13745 161 TDLSGLFHMGGDEVNMNCWNHTKSITDWMYA-KF---------------------------------------------G 194 (406)
Q Consensus 161 ~~~~~~iHiGgDE~~~~~w~~~~~~~~~~~~-g~---------------------------------------------~ 194 (406)
.. +||+|||||...||+++|++|+||++ |+ .
T Consensus 327 ~~---~~HlGGDEV~~~CW~s~~~Iq~fM~~kGfg~~~~~~~~~~~~~~~~i~~s~~~~~I~Wqevf~n~~~i~p~tiiq 403 (542)
T KOG2499|consen 327 DE---FFHLGGDEVSTPCWKSNPEIQDFMRKKGFGLDTKSLERLYIQFLLDILNSWNKTVIVWQEVFDNKRKIDPRTIIQ 403 (542)
T ss_pred HH---HeecCCceeecccccCChHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCceEEEeehhccccccCCCCceee
Confidence 98 99999999999999999999999998 11 1
Q ss_pred eeeCC------------C--------Cccc----ccccchhhhcccCCccccccccccCCCChhhhcccccceeeecccc
Q psy13745 195 AWVGE------------G--------NNWC----SPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQ 250 (406)
Q Consensus 195 ~w~~~------------~--------~~~~----~~~~~w~~~Y~~~P~~~~~~~~~~~~~~~~~~~~ilG~ea~lWsE~ 250 (406)
.|... | ..|+ .--.+|+++|+.+|.... ++++++++|+|||+|||+|+
T Consensus 404 ~W~~~~~~~~~~k~v~~~~~~ivs~s~~wYLd~~~~g~dw~~~Y~~~p~~~~--------g~~~~k~lVlGGE~cmWgE~ 475 (542)
T KOG2499|consen 404 IWKIGTWYPKELKIVTKGYRFIVSNSAAWYLDHIGYGSDWRKVYNTEPLSGM--------GTPEQKKLVLGGEVCMWGEY 475 (542)
T ss_pred eeccCCccHHHHHHHhccCceEEEeccceEeeccccCCChhheeeccccccC--------CCHHHhhheecceeeeehhh
Confidence 12211 0 1121 112578999999998775 47889999999999999999
Q ss_pred ccccccccchhhhHHHHHhhhccCCC-CChHHHHHHHHHHHHHHHHcCCCcccCCceeeecCCCcee
Q psy13745 251 ADAATLDGRLWPRASAMAERLWSNPA-SNWRAAEYRFLHQRERLVEIGLAAESIEPEWCYQNEGLCG 316 (406)
Q Consensus 251 ~~~~~~~~~~~PR~~A~AE~~Ws~~~-~~~~~f~~RL~~~~~rl~~~Gi~~~~~~p~~c~~~~~~~~ 316 (406)
+|+.+++.++|||++|+|||+||.+. ..+.++..||..|||||.+|||.++|++|.||.+++++|.
T Consensus 476 vD~t~L~~RlWPRAsA~AERLWS~~~~~~~~~A~~Rl~~~RcrLv~RGi~A~p~~p~~C~~~~~~c~ 542 (542)
T KOG2499|consen 476 VDNTNLESRLWPRASAAAERLWSNKKVSRLLDAYPRLHLFRCRLVARGIGAQPVQPGWCLQEEGECP 542 (542)
T ss_pred ccccccccccccchhHHHHHhhcccccchHHHHHHHHHHHHHHHHhcCCCcCCCCCcccccCCCCCC
Confidence 99999999999999999999999554 3699999999999999999999999999999999999983
No 2
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=100.00 E-value=2.1e-77 Score=598.56 Aligned_cols=275 Identities=49% Similarity=0.894 Sum_probs=240.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHH
Q psy13745 7 VQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGL 86 (406)
Q Consensus 7 ~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~ 86 (406)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||||+++||+|+++|+|+++++||++|+++||+||+
T Consensus 1 f~~RG~mlDvaR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~Lt~~ga~~~~~~YT~~di~eiv~yA~ 80 (348)
T cd06562 1 FPHRGLLLDTSRHFLSVDSIKRTIDAMAYNKLNVLHWHITDSQSFPLESPSYPELSKKGAYSPSEVYTPEDVKEIVEYAR 80 (348)
T ss_pred CCccceeeeccccCCCHHHHHHHHHHHHHhCCcEEEEeEEcCCCceEeeCCCchhhhccCcCCCceECHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCeecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhccCCCCce
Q psy13745 87 VRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGL 166 (406)
Q Consensus 87 ~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~~~~~~~ 166 (406)
+|||+||||||+|||+.++++. +|++.|.....|..++.+...++|||++|+|++|+++|++|++++|+++ |
T Consensus 81 ~rgI~vIPEID~PGH~~a~~~~-----~p~l~~~~~~~~~~~~~~~~~~~L~~~~~~t~~fl~~vl~E~~~lF~~~---~ 152 (348)
T cd06562 81 LRGIRVIPEIDTPGHTGSWGQG-----YPELLTGCYAVWRKYCPEPPCGQLNPTNPKTYDFLKTLFKEVSELFPDK---Y 152 (348)
T ss_pred HcCCEEEEeccCchhhHHHHHh-----ChhhhCCCCccccccccCCCCccccCCChhHHHHHHHHHHHHHHhcCCc---c
Confidence 9999999999999999997654 4456655433355566666778999999999999999999999999999 9
Q ss_pred EEecCCccccccccCChHHHHHHHh------------------------c--ccee--------------------eCC-
Q psy13745 167 FHMGGDEVNMNCWNHTKSITDWMYA------------------------K--FGAW--------------------VGE- 199 (406)
Q Consensus 167 iHiGgDE~~~~~w~~~~~~~~~~~~------------------------g--~~~w--------------------~~~- 199 (406)
|||||||+..+||+++|.|+++|++ | .+.| .+.
T Consensus 153 iHiGgDE~~~~~w~~~p~~~~~m~~~g~~~~~~l~~~f~~~~~~~l~~~Gk~~i~W~d~~~~~~~~~~~~~iv~~W~~~~ 232 (348)
T cd06562 153 FHLGGDEVNFNCWNSNPEIQKFMKKNNGTDYSDLESYFIQRALDIVRSLGKTPIVWEEVFDNGVYLLPKDTIVQVWGGSD 232 (348)
T ss_pred eEeecCCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeeecccCCCccCCCCeEEEECCCcH
Confidence 9999999999999999999998885 1 1223 221
Q ss_pred --------C--------Ccc---------cccccchhhhcccCCccccccccccCCCChhhhcccccceeeecccccccc
Q psy13745 200 --------G--------NNW---------CSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQADAA 254 (406)
Q Consensus 200 --------~--------~~~---------~~~~~~w~~~Y~~~P~~~~~~~~~~~~~~~~~~~~ilG~ea~lWsE~~~~~ 254 (406)
| ..+ ..++.+|+++|+++|.... .+++..++|+|||+|||+|++++.
T Consensus 233 ~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~y~~~p~~~~--------~~~~~~~~ilG~~~~lW~E~~~~~ 304 (348)
T cd06562 233 ELKNVLAAGYKVILSSYDFWYLDCGFGGWVGPGNDWCDPYKNWPRIYS--------GTPEQKKLVLGGEACMWGEQVDDT 304 (348)
T ss_pred HHHHHHHCCCCEEEeCCCcEEEeecCCCCCCCCCcHhhhhcCCCCCCC--------CChhhcccEEEEEEEeeeeeeCcc
Confidence 0 000 1234679999999886543 234678999999999999999998
Q ss_pred ccccchhhhHHHHHhhhccCCCC-ChHHHHHHHHHHHHHHHHcC
Q psy13745 255 TLDGRLWPRASAMAERLWSNPAS-NWRAAEYRFLHQRERLVEIG 297 (406)
Q Consensus 255 ~~~~~~~PR~~A~AE~~Ws~~~~-~~~~f~~RL~~~~~rl~~~G 297 (406)
++++|+|||++|+||++|+++.. +|.+|..||..|++||.+||
T Consensus 305 ~~~~~~~PR~~a~AE~~W~~~~~~~~~~f~~Rl~~~~~~l~~~g 348 (348)
T cd06562 305 NLDQRLWPRASALAERLWSGPSDTNLTDAEPRLVEFRCRLVRRG 348 (348)
T ss_pred ceeehhhhhHHHHHHHhhCCCcCCCHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999764 79999999999999999998
No 3
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=2.5e-73 Score=571.33 Aligned_cols=264 Identities=33% Similarity=0.584 Sum_probs=226.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCC----------------C
Q psy13745 7 VQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSS----------------E 70 (406)
Q Consensus 7 ~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~----------------~ 70 (406)
|+|||+|||+||||+|+++||++||.||.+|||+|||||+||||||||+++||+|+++|+|++ +
T Consensus 1 f~~RG~mLD~aR~f~~~~~ik~~Id~ma~~K~N~lhlHltDdq~~rle~~~~P~Lt~~ga~~~~~~~~~~~~~~~~~~~~ 80 (357)
T cd06563 1 FSWRGLMLDVSRHFFPVDEVKRFIDLMALYKLNVFHWHLTDDQGWRIEIKKYPKLTEVGAWRGPTEIGLPQGGGDGTPYG 80 (357)
T ss_pred CCccceeeeccccCcCHHHHHHHHHHHHHhccceEEEeeecCCCceecccCcchhhhcccccCcccccccccccCCCccC
Confidence 899999999999999999999999999999999999999999999999999999999999985 5
Q ss_pred CCCCHHHHHHHHHHHHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHH
Q psy13745 71 KIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGG 150 (406)
Q Consensus 71 ~~YT~~ei~~lv~yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~ 150 (406)
++||++|+++||+||++|||+||||||+|||+.++++. +|++.|......-......++++|||++|+|++|+++
T Consensus 81 ~~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~~-----~pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~~~ 155 (357)
T cd06563 81 GFYTQEEIREIVAYAAERGITVIPEIDMPGHALAALAA-----YPELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFLED 155 (357)
T ss_pred ceECHHHHHHHHHHHHHcCCEEEEecCCchhHHHHHHh-----CccccCCCCCCccccccCcCCCccCCCChhHHHHHHH
Confidence 89999999999999999999999999999999997653 5567776432110011233467899999999999999
Q ss_pred HHHHHHhhccCCCCceEEecCCccccccccCChHHHHHHHh------------------------c--c-----------
Q psy13745 151 LYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDWMYA------------------------K--F----------- 193 (406)
Q Consensus 151 l~~e~~~~f~~~~~~~iHiGgDE~~~~~w~~~~~~~~~~~~------------------------g--~----------- 193 (406)
|++|++++|+++ +|||||||+...||++||.|+++|++ | .
T Consensus 156 ll~E~~~lF~~~---~iHiGgDE~~~~~w~~~~~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~G~~~i~W~d~~~~~l 232 (357)
T cd06563 156 VLDEVAELFPSP---YIHIGGDEVPKGQWEKSPACQARMKEEGLKDEHELQSYFIKRVEKILASKGKKMIGWDEILEGGL 232 (357)
T ss_pred HHHHHHHhCCCC---eEEEeccccCCcccccCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCEEEEeecccccCC
Confidence 999999999999 99999999999999999999988776 1 1
Q ss_pred ------ceeeCC---------C-----------------------CcccccccchhhhcccCCccccccccccCCCChhh
Q psy13745 194 ------GAWVGE---------G-----------------------NNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPEL 235 (406)
Q Consensus 194 ------~~w~~~---------~-----------------------~~~~~~~~~w~~~Y~~~P~~~~~~~~~~~~~~~~~ 235 (406)
+.|... | ..++.++.+|+++|+++|.... ..++.
T Consensus 233 ~~~~iv~~W~~~~~~~~~~~~G~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~y~~~P~~~~--------~~~~~ 304 (357)
T cd06563 233 PPNATVMSWRGEDGGIKAAKQGYDVIMSPGQYLYLDYAQSKGPDEPASWAGFNTLEKVYSFEPVPGG--------LTPEQ 304 (357)
T ss_pred CCCcEEEECCCchHHHHHHHCCCCEEEeCCCceEEecCCCCCCCCCccccCCCCHHHHhcCCCCCCC--------CChhH
Confidence 223321 0 0123456789999999998754 13467
Q ss_pred hcccccceeeeccccccc-cccccchhhhHHHHHhhhccCCC-CChHHHHHHH
Q psy13745 236 KSLIMGQEAALWSEQADA-ATLDGRLWPRASAMAERLWSNPA-SNWRAAEYRF 286 (406)
Q Consensus 236 ~~~ilG~ea~lWsE~~~~-~~~~~~~~PR~~A~AE~~Ws~~~-~~~~~f~~RL 286 (406)
.++|+|||+|||+|++++ .++++++|||++|+||++|+++. ++|++|..||
T Consensus 305 ~~~ilG~~~~lW~E~~~~~~~~~~~~~PR~~a~AE~~W~~~~~~~~~~f~~rl 357 (357)
T cd06563 305 AKRILGVQANLWTEYIPTPERVEYMAFPRLLALAEVAWTPPEKKDWEDFRKRL 357 (357)
T ss_pred hcCEEEEEEEecccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCHHHHHhhC
Confidence 899999999999999965 68999999999999999999976 5899999986
No 4
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.6e-72 Score=551.39 Aligned_cols=268 Identities=33% Similarity=0.557 Sum_probs=205.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHH
Q psy13745 7 VQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGL 86 (406)
Q Consensus 7 ~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~ 86 (406)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+++|+ .+++||++|+++||+||+
T Consensus 1 f~~RG~mlD~aR~f~~~~~ik~~Id~ma~~KlN~lh~HltDd~~~rle~~~~P~lt~~g~--~~~~yT~~di~elv~yA~ 78 (311)
T cd06570 1 FPWRGLLIDVSRHFIPVAVIKRQLDAMASVKLNVFHWHLTDDQGFRIESKKYPKLQQKAS--DGLYYTQEQIREVVAYAR 78 (311)
T ss_pred CCccCeEEecCCCCcCHHHHHHHHHHHHHhCCeEEEEEEecCCCceeecCCCccccccCC--CCCccCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999986 468999999999999999
Q ss_pred hcCCeecccccCCccchhhhccccccccccccccCCC--cCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhccCCCC
Q psy13745 87 VRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKE--PWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLS 164 (406)
Q Consensus 87 ~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~~~~~ 164 (406)
+|||+||||||+|||+.++++ .||++.|.... ....++. ...+|||++|+|++|+++|++|++++||++
T Consensus 79 ~rgI~vIPEId~PGH~~a~~~-----~ypel~~~~~~~~~~~~~~~--~~~~l~~~~p~t~~f~~~l~~E~~~lF~~~-- 149 (311)
T cd06570 79 DRGIRVVPEIDVPGHASAIAV-----AYPELASGPGPYVIERGWGV--FEPLLDPTNEETYTFLDNLFGEMAELFPDE-- 149 (311)
T ss_pred HcCCEEEEeecCccchHHHHH-----hCHHhccCCCcccccccccc--CCCccCCCChhHHHHHHHHHHHHHHhCCCC--
Confidence 999999999999999998654 35566654321 1111221 235799999999999999999999999999
Q ss_pred ceEEecCCccccccccCChHHHHHHHh-c-------------------------cceeeCCCCc-c--cccccchhh---
Q psy13745 165 GLFHMGGDEVNMNCWNHTKSITDWMYA-K-------------------------FGAWVGEGNN-W--CSPYIGWQK--- 212 (406)
Q Consensus 165 ~~iHiGgDE~~~~~w~~~~~~~~~~~~-g-------------------------~~~w~~~~~~-~--~~~~~~w~~--- 212 (406)
+|||||||+...||++||.|++||++ | .+.|.+.-.. - ..-...|..
T Consensus 150 -~iHiGgDE~~~~~W~~~p~~~~~~~~~g~~~~~~l~~~f~~~~~~~v~~~Gk~~~~W~d~~~~~l~~~~iv~~W~~~~~ 228 (311)
T cd06570 150 -YFHIGGDEVDPKQWNENPRIQAFMKEHGLKDAAALQAYFNQRVEKILSKHGKKMIGWDEVLHPDLPKNVVIQSWRGHDS 228 (311)
T ss_pred -ceEeeccCCCCCcccCCHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCeEEEeccccccCCCCCeEEEEeCCchH
Confidence 99999999999999999999999987 1 1234322000 0 000011110
Q ss_pred ---hccc-CCccccccccccCCCC----hhhhcccccceeeeccccccccccccchhhhHHHHHhhhccCCC-CChHHHH
Q psy13745 213 ---VYDN-DPIKLLDQTSLNISNN----PELKSLIMGQEAALWSEQADAATLDGRLWPRASAMAERLWSNPA-SNWRAAE 283 (406)
Q Consensus 213 ---~Y~~-~P~~~~~~~~~~~~~~----~~~~~~ilG~ea~lWsE~~~~~~~~~~~~PR~~A~AE~~Ws~~~-~~~~~f~ 283 (406)
+-+. .+.-......||.... -.....|+|||+|||||++++.++++++|||++|+||++||+++ ++|++|.
T Consensus 229 ~~~~~~~G~~vI~s~~~YlD~~~~~~~~y~~~p~ilG~~~~lW~E~v~~~~~~~~~~PR~~A~AE~~Ws~~~~~~~~~~~ 308 (311)
T cd06570 229 LGEAAKAGYQGILSTGYYIDQPQPAAYHYRVDPMILGGEATMWAELVSEETIDSRLWPRTAAIAERLWSAQDVRDEDDMY 308 (311)
T ss_pred HHHHHHCCCCEEEechhheeCCCchhheeCCCCcEEEEEEEEeecCcCHHHHHHHHhHHHHHHHHHhhCCCcCCCHHHHH
Confidence 0000 0000000000111000 00123399999999999998889999999999999999999987 4899999
Q ss_pred HHH
Q psy13745 284 YRF 286 (406)
Q Consensus 284 ~RL 286 (406)
.||
T Consensus 309 ~Rl 311 (311)
T cd06570 309 RRL 311 (311)
T ss_pred hhC
Confidence 986
No 5
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=5.9e-72 Score=573.60 Aligned_cols=275 Identities=28% Similarity=0.466 Sum_probs=219.6
Q ss_pred ccCCCCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccC--------------
Q psy13745 3 DIEVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYS-------------- 68 (406)
Q Consensus 3 D~P~~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~-------------- 68 (406)
|+|||+|||+||||||||+|+++||++||.||++|||+||||||||||||||+++||+|+++|+|+
T Consensus 1 D~Prf~~RGlmLDvaR~f~~~~~ik~~Id~ma~~K~N~lHlHLtDdqgwriei~~~P~Lt~~ga~r~~~~~~~~~~~~~~ 80 (445)
T cd06569 1 DAPRFEYRGMHLDVARNFHSKETVLKLLDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTEVGAKRCHDLSETTCLLPQL 80 (445)
T ss_pred CCCCCcccceeeeccCCCCCHHHHHHHHHHHHHhCCceEEEEeecCCCcceeccCCchhhhccccccccccccccccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ---------CCCCCCHHHHHHHHHHHHhcCCeecccccCCccchhhhccccccccccccccCCC----cC--------cc
Q psy13745 69 ---------SEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKE----PW--------TK 127 (406)
Q Consensus 69 ---------~~~~YT~~ei~~lv~yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~----~~--------~~ 127 (406)
.+++||++||++||+||++|||+||||||+|||+.++++..+ ..|+.|.|.... ++ ..
T Consensus 81 ~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~-~~yp~l~~~g~~~~~~~~~~~d~~~~~~ 159 (445)
T cd06569 81 GSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAME-ARYRKLMAAGKPAEAEEYRLSDPADTSQ 159 (445)
T ss_pred ccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhh-ccchhhhccCCccccccccccCcccccc
Confidence 257899999999999999999999999999999999887542 225566554321 01 00
Q ss_pred c-ccc-CCCCCCCCCChhHHHHHHHHHHHHHhhc-----cCCCCceEEecCCccccccccCChHHH--HHHHh-------
Q psy13745 128 F-CVE-PPCGQLNPVSDRVYEVLGGLYEEMTDLF-----RTDLSGLFHMGGDEVNMNCWNHTKSIT--DWMYA------- 191 (406)
Q Consensus 128 ~-~~~-~~~~~l~~~~~~t~~f~~~l~~e~~~~f-----~~~~~~~iHiGgDE~~~~~w~~~~~~~--~~~~~------- 191 (406)
+ +++ ..+++|||++|+||+|+++|++||+++| |++ ||||||||++..||++||.|+ .+|++
T Consensus 160 ~~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~lF~~~g~P~~---yiHiGGDEv~~~~W~~~~~~~~~~~~~~~~~~~~~ 236 (445)
T cd06569 160 YLSVQFYTDNVINPCMPSTYRFVDKVIDEIARMHQEAGQPLT---TIHFGGDEVPEGAWGGSPACKAQLFAKEGSVKDVE 236 (445)
T ss_pred cccccccccccccCCchhHHHHHHHHHHHHHHHHhccCCCcc---eEEEeccccCCCcccCCHHHHHHHHHHhcCCCCHH
Confidence 0 011 1247899999999999999999999999 556 999999999999999999998 66654
Q ss_pred -----------------c---------------------------cceeeC-----C---------C-------------
Q psy13745 192 -----------------K---------------------------FGAWVG-----E---------G------------- 200 (406)
Q Consensus 192 -----------------g---------------------------~~~w~~-----~---------~------------- 200 (406)
| ++.|.+ . |
T Consensus 237 ~l~~~f~~~v~~~l~~~Gk~~i~W~e~~~~~~~~~~~~~~~~~~~v~~W~~~~~~~~~~~~~~~~~G~~vI~s~~~~~Yl 316 (445)
T cd06569 237 DLKDYFFERVSKILKAHGITLAGWEDGLLGKDTTNVDGFATPYVWNNVWGWGYWGGEDRAYKLANKGYDVVLSNATNLYF 316 (445)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEecccccCCCcccccccCCCCeEEEEccCCcccccHHHHHHHHCCCCEEEeCCCcEEE
Confidence 0 123431 0 0
Q ss_pred ------------CcccccccchhhhcccCCccccccccc----c---------C-CCChhhhcccccceeeeccccccc-
Q psy13745 201 ------------NNWCSPYIGWQKVYDNDPIKLLDQTSL----N---------I-SNNPELKSLIMGQEAALWSEQADA- 253 (406)
Q Consensus 201 ------------~~~~~~~~~w~~~Y~~~P~~~~~~~~~----~---------~-~~~~~~~~~ilG~ea~lWsE~~~~- 253 (406)
..|+..+.+|+++|+++|......... + . ...++++++|+|||+|||||++++
T Consensus 317 D~~~~~~~~~~g~~w~~~~~~~~~~y~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ilG~e~~lWsE~v~~~ 396 (445)
T cd06569 317 DFPYEKHPEERGYYWAGRFVDTKKVFSFMPDNLYANAEVTRDGDPIDDTALNGKVRLTLEGPKNILGLQGQLWSETIRTD 396 (445)
T ss_pred ecCCCCCCCcCCcccccCCCCHHHhhccCCchhhccchhhcccCccccccccccccCChhHhcceeEEEEeeeccccCCH
Confidence 124445688999999999642110000 0 0 123567889999999999999985
Q ss_pred cccccchhhhHHHHHhhhccCCCCChHHH
Q psy13745 254 ATLDGRLWPRASAMAERLWSNPASNWRAA 282 (406)
Q Consensus 254 ~~~~~~~~PR~~A~AE~~Ws~~~~~~~~f 282 (406)
.++++|+|||++|+||++||+.. .|.++
T Consensus 397 ~~l~~~~~PR~~A~AE~~Ws~~~-~~~~~ 424 (445)
T cd06569 397 EQLEYMVFPRLLALAERAWHKAP-WEADY 424 (445)
T ss_pred HHhHHHhhhHHHHHHHHHhcCCc-ccccc
Confidence 68999999999999999999854 34443
No 6
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=100.00 E-value=4.8e-71 Score=548.17 Aligned_cols=259 Identities=28% Similarity=0.485 Sum_probs=215.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccC-----CCCCCCHHHHHHH
Q psy13745 7 VQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYS-----SEKIYSREDIREI 81 (406)
Q Consensus 7 ~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~-----~~~~YT~~ei~~l 81 (406)
|+|||+|||+||||+|+++||++||.||.+|||+||||||||||||+|+++||+|+..|+++ ++++||++||++|
T Consensus 1 f~~RG~mlD~aR~f~~~~~lk~~id~ma~~KlN~lhlHLtD~~~~rle~~~~P~lt~~ga~~~~~~~~~~~YT~~di~el 80 (329)
T cd06568 1 FAYRGLMLDVARHFFTVAEVKRYIDLLALYKLNVLHLHLTDDQGWRIEIKSWPKLTEIGGSTEVGGGPGGYYTQEDYKDI 80 (329)
T ss_pred CCccceeeeccCCCcCHHHHHHHHHHHHHhCCcEEEEEeecCCcceeeecCcccccccccccccCCCCCCcCCHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999874 5789999999999
Q ss_pred HHHHHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhccC
Q psy13745 82 VHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRT 161 (406)
Q Consensus 82 v~yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~~ 161 (406)
|+||++|||+||||||+|||+.++++ .+|++.|.....-...+.++.+++|||++|+|++|+++|++|++++||+
T Consensus 81 v~yA~~rgI~vIPEiD~PGH~~a~~~-----~~p~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl~~v~~E~~~~f~~ 155 (329)
T cd06568 81 VAYAAERHITVVPEIDMPGHTNAALA-----AYPELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFVDDVFRELAALTPG 155 (329)
T ss_pred HHHHHHcCCEEEEecCCcHHHHHHHH-----hChhhccCCCCCccccccCCCCcccCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999765 3567777642211112334456789999999999999999999999999
Q ss_pred CCCceEEecCCccccccccCChHHHHHHHh--------c-------------------cceeeCC------------C--
Q psy13745 162 DLSGLFHMGGDEVNMNCWNHTKSITDWMYA--------K-------------------FGAWVGE------------G-- 200 (406)
Q Consensus 162 ~~~~~iHiGgDE~~~~~w~~~~~~~~~~~~--------g-------------------~~~w~~~------------~-- 200 (406)
+ +|||||||+....+ .....|+++ | ++.|... |
T Consensus 156 ~---~iHiGgDE~~~~~~---~~~~~f~~~~~~~v~~~Gk~~~~W~d~~~~~l~~~~iv~~W~~~~~~~~~~~~~~~G~~ 229 (329)
T cd06568 156 P---YIHIGGDEAHSTPH---DDYAYFVNRVRAIVAKYGKTPVGWQEIARADLPAGTVAQYWSDRAPDADAAAALDKGAK 229 (329)
T ss_pred C---eEEEecccCCCCch---HHHHHHHHHHHHHHHHCCCeEEEECcccccCCCCCeEEEECCCCCCchHHHHHHHCCCC
Confidence 9 99999999987543 223333333 1 1344431 0
Q ss_pred ----------------------CcccccccchhhhcccCCccccccccccCCCChhhhcccccceeeeccccccc-cccc
Q psy13745 201 ----------------------NNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQADA-ATLD 257 (406)
Q Consensus 201 ----------------------~~~~~~~~~w~~~Y~~~P~~~~~~~~~~~~~~~~~~~~ilG~ea~lWsE~~~~-~~~~ 257 (406)
..|+ ++++|+++|+++|..... .+.+++|+|||+|||+|++++ .+++
T Consensus 230 vI~s~~~~~YlD~~~~~~~~~~~~~~-~~~~~~~~y~~~P~~~~~---------~~~~~~ilG~~~~lW~E~~~~~~~~~ 299 (329)
T cd06568 230 VILSPADKAYLDMKYDADSPLGLTWA-GPVEVREAYDWDPAAYGP---------GVPDEAILGVEAPLWTETIRNLDDLE 299 (329)
T ss_pred EEEeCCCcEEEecCCCCCCCCCcccC-CCCCHHHHeeeCCCCCCC---------cchhhCEEEEEEeecccccCCHHHHH
Confidence 1233 357899999999976542 246789999999999999987 5899
Q ss_pred cchhhhHHHHHhhhccCCC-CChHHHHHHH
Q psy13745 258 GRLWPRASAMAERLWSNPA-SNWRAAEYRF 286 (406)
Q Consensus 258 ~~~~PR~~A~AE~~Ws~~~-~~~~~f~~RL 286 (406)
+++|||++|+||++||+++ ++|++|..||
T Consensus 300 ~~~~PR~~a~AE~~Ws~~~~~~~~~f~~rl 329 (329)
T cd06568 300 YMAFPRLAGVAEIGWSPQEARDWDDYKVRL 329 (329)
T ss_pred HHHHhHHHHHHHHHhCCCcCCCHHHHHhhC
Confidence 9999999999999999986 5899999886
No 7
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=4.2e-63 Score=487.13 Aligned_cols=244 Identities=34% Similarity=0.626 Sum_probs=198.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccC----ccCCCCCCCHHHHHHHHHH
Q psy13745 9 SARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSG----AYSSEKIYSREDIREIVHY 84 (406)
Q Consensus 9 ~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~g----a~~~~~~YT~~ei~~lv~y 84 (406)
|||+|||+||||+|+++||++||.||.+|+|+|||||+||||||||+++||+|+++| +++++++||++||++||+|
T Consensus 1 ~RG~mlD~aR~~~~~~~lk~~id~ma~~K~N~lhlHl~D~~~~~le~~~~p~l~~~g~~~~~~~~~~~yT~~di~elv~y 80 (303)
T cd02742 1 IRGIMLDVSRHFLSVESIKRTIDVLARYKINTFHWHLTDDQAWRIESKKFPELAEKGGQINPRSPGGFYTYAQLKDIIEY 80 (303)
T ss_pred CcceeeeccccCcCHHHHHHHHHHHHHhCCcEEEEeeecCCCceEeeCccchhhhhcccccCCCCCCeECHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999998 5577899999999999999
Q ss_pred HHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhccCCCC
Q psy13745 85 GLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLS 164 (406)
Q Consensus 85 A~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~~~~~ 164 (406)
|++|||+||||||+|||+.++++. ++++.|..... . ......++|||++|+|++|+++|++|++++|+++
T Consensus 81 A~~rgI~viPEiD~PGH~~a~~~~-----~p~l~~~~~~~-~--~~~~~~~~l~~~~~~t~~fl~~l~~e~~~lf~~~-- 150 (303)
T cd02742 81 AAARGIEVIPEIDMPGHSTAFVKS-----FPKLLTECYAG-L--KLRDVFDPLDPTLPKGYDFLDDLFGEIAELFPDR-- 150 (303)
T ss_pred HHHcCCEEEEeccchHHHHHHHHh-----CHHhccCcccc-C--CCCCCCCccCCCCccHHHHHHHHHHHHHHhCCCC--
Confidence 999999999999999999987654 34455432110 0 0112347899999999999999999999999998
Q ss_pred ceEEecCCccccccccCChHHHHHHHh--------c---------------------cceeeCCC---------------
Q psy13745 165 GLFHMGGDEVNMNCWNHTKSITDWMYA--------K---------------------FGAWVGEG--------------- 200 (406)
Q Consensus 165 ~~iHiGgDE~~~~~w~~~~~~~~~~~~--------g---------------------~~~w~~~~--------------- 200 (406)
+|||||||+... -........|+++ | ++.|....
T Consensus 151 -~iHiGgDE~~~~-~~~~~l~~~f~~~~~~~v~~~g~~~~~W~d~~~~~~~l~~~~ii~~W~~~~~~~~~~~~~~~~~G~ 228 (303)
T cd02742 151 -YLHIGGDEAHFK-QDRKHLMSQFIQRVLDIVKKKGKKVIVWQDGFDKKMKLKEDVIVQYWDYDGDKYNVELPEAAAKGF 228 (303)
T ss_pred -eEEecceecCCC-CCHHHHHHHHHHHHHHHHHHcCCeEEEecccccCCCCCCCCeEEEEccCCCCcchHHHHHHHHCCC
Confidence 999999999864 1112223344443 1 13444321
Q ss_pred ------Cc--c--cccccchhhhcccCCccccccccccCCCChhhhcccccceeeecccccccc-ccccchhhhHHHHHh
Q psy13745 201 ------NN--W--CSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQADAA-TLDGRLWPRASAMAE 269 (406)
Q Consensus 201 ------~~--~--~~~~~~w~~~Y~~~P~~~~~~~~~~~~~~~~~~~~ilG~ea~lWsE~~~~~-~~~~~~~PR~~A~AE 269 (406)
.. + +..+.+|+++|+++|.... .++.+++|+|||+|||+|++++. .+++++|||++|+||
T Consensus 229 ~vi~s~~~yly~~~~~~~~~~~~y~~~p~~~~---------~~~~~~~vlG~~~~lW~E~~~~~~~~~~~~~pr~~a~AE 299 (303)
T cd02742 229 PVILSNGYYLDIFIDGALDARKVYKNDPLAVP---------TPQQKDLVLGVIACLWGETVKDTKTLQYRFWPRALAVAE 299 (303)
T ss_pred CEEEeCCceeeeeCCCCCCHHHHhCCCCCCCC---------CcccccceEEEEEeeeccccCCHHHHHHHHHHHHHHHHH
Confidence 00 1 2445789999999987542 24567899999999999999985 999999999999999
Q ss_pred hhcc
Q psy13745 270 RLWS 273 (406)
Q Consensus 270 ~~Ws 273 (406)
++||
T Consensus 300 ~~Ws 303 (303)
T cd02742 300 RSWS 303 (303)
T ss_pred HhhC
Confidence 9997
No 8
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=100.00 E-value=5e-64 Score=501.91 Aligned_cols=257 Identities=42% Similarity=0.787 Sum_probs=195.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCC---CCCHHHHHHHHH
Q psy13745 7 VQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK---IYSREDIREIVH 83 (406)
Q Consensus 7 ~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~---~YT~~ei~~lv~ 83 (406)
|+|||+|||+||||+|+++||++||.||.+|||+|||||+|+||||+|++++|+|+.+|+++... +||++||++||+
T Consensus 1 f~~RG~~lD~aR~~~~~~~ik~~id~ma~~k~N~lhlhl~D~~~~~~~~~~~p~l~~~ga~~~~~~~~~yT~~di~~lv~ 80 (351)
T PF00728_consen 1 FPWRGLMLDVARHFFSVDTIKRLIDQMAYYKLNVLHLHLSDDQGFRLESKSYPELTEKGAYRPSDAGGYYTKEDIRELVA 80 (351)
T ss_dssp SSEEEEEEETSSS-B-HHHHHHHHHHHHHTT-SEEEEEEESSTCB-BEBSTSTHHHHTTTESTTCTESEBEHHHHHHHHH
T ss_pred CCccceeeccCCCCCCHHHHHHHHHHHHHcCCcEEEEEEecCCCCccccCCCccccccCccccccccccCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999998855 999999999999
Q ss_pred HHHhcCCeecccccCCccchhhhcccccccccccccc---CCCcC-ccccccCCCCCCCCCChhHHHHHHHHHHHHHhhc
Q psy13745 84 YGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCF---KKEPW-TKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLF 159 (406)
Q Consensus 84 yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f 159 (406)
||++|||+||||||+|||+.++++.+ |++.+. ....+ ...+..+.+.+|||++|+|++|+++|++|++++|
T Consensus 81 yA~~~gI~VIPeid~PGH~~~~l~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~~l~~e~~~~f 155 (351)
T PF00728_consen 81 YAKERGIEVIPEIDTPGHAEAWLKAY-----PELGCSAWPEDKSWPNSTCWYPDNGVLDPSNPETYEFLKDLLDEVADLF 155 (351)
T ss_dssp HHHHTT-EEEEEEEESSS-HHHHHHH-----HHHCCCHTTCSSSCEEEETTSEEEEEE-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCceeeeccCchHHHHHHHhC-----chhhccccccccccccccccCCCcccCCCCcHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999987643 344432 11111 1222333456899999999999999999999999
Q ss_pred cCCCCceEEecCCccccccccCChHHHHHHHh------------------------c--cceeeCCCC------------
Q psy13745 160 RTDLSGLFHMGGDEVNMNCWNHTKSITDWMYA------------------------K--FGAWVGEGN------------ 201 (406)
Q Consensus 160 ~~~~~~~iHiGgDE~~~~~w~~~~~~~~~~~~------------------------g--~~~w~~~~~------------ 201 (406)
+++ +|||||||++..||+++|+|+++|++ | .+.|.+.-.
T Consensus 156 ~~~---~iHiGgDEv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~v~~~g~~~~~W~D~~~~~~~~~~~~~~~ 232 (351)
T PF00728_consen 156 PSK---YIHIGGDEVNYNCWNNSPECQAWMKQNGLTDPNDLFQYFVNRLADIVKKHGKKPIIWNDMLDDFPDASLLPKDV 232 (351)
T ss_dssp TSS---EEEEE-TSTTTHHHHCHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHTTSEEEEESTTTTTTCCGHCSCTTE
T ss_pred CCC---eEEeCCcccccccccCCHHHhhHHhhcCCchHHHHHHHHHHHHHHHHHhcCCcEEEEccccccCCccccccCCc
Confidence 998 99999999999999999999998864 1 123332100
Q ss_pred ---cccc-------------------------------------------cccchhhhcccCCccccccccccCCCChhh
Q psy13745 202 ---NWCS-------------------------------------------PYIGWQKVYDNDPIKLLDQTSLNISNNPEL 235 (406)
Q Consensus 202 ---~~~~-------------------------------------------~~~~w~~~Y~~~P~~~~~~~~~~~~~~~~~ 235 (406)
.|.. .+.+|+++|+++|....... ....+.+
T Consensus 233 ~i~~W~~~~~~~~~~~~~~~g~~vI~s~~~~~Yld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 309 (351)
T PF00728_consen 233 IIQVWNYDWGPASAQEFAKKGYKVINSPSDYLYLDPGQSPWPEEDGNYWAPFNTWSDFYNWDPAYFNTNS---TQIDPAQ 309 (351)
T ss_dssp EEEEESSTTHHHHHHHHHHTTHEEEESTHGTGBTTTTSSTTTSSSSBHTTSTHHHHHHHHHHHCHCTTTC---STTTTHH
T ss_pred eEEEeeccccchhhhHHHHhcCcEEEcCCCceEEccCcCCCCccCccccccccccccccccccccccccc---chhhhhc
Confidence 0100 02234445555544332100 0011334
Q ss_pred h-cccccceeeeccccc-cccccccchhhhHHHHHhhhccC
Q psy13745 236 K-SLIMGQEAALWSEQA-DAATLDGRLWPRASAMAERLWSN 274 (406)
Q Consensus 236 ~-~~ilG~ea~lWsE~~-~~~~~~~~~~PR~~A~AE~~Ws~ 274 (406)
. ++|+|||+|||+|.+ +..++++++|||++|+||++|++
T Consensus 310 ~~~~i~G~~~~~W~E~~~~~~~l~~~~~Pr~~A~AE~~Ws~ 350 (351)
T PF00728_consen 310 KSERILGGEAALWSENIRDEEDLDYRLWPRLAALAERLWSP 350 (351)
T ss_dssp HCCCEEEEEEEEETTTTTSHHHHHHHHTTHHHHHHHHHHSS
T ss_pred ccCCCceeEEEeecCCCCCHHHHHHHHHHHHHHHHHHHhCC
Confidence 4 599999999999999 55789999999999999999996
No 9
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3e-61 Score=493.46 Aligned_cols=346 Identities=26% Similarity=0.372 Sum_probs=263.3
Q ss_pred CcccCCCCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCC-----------
Q psy13745 1 MSDIEVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSS----------- 69 (406)
Q Consensus 1 I~D~P~~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~----------- 69 (406)
|.|+|||.|||+|+|+||||+|++.+|++||.||.+|||+|||||+||||||+||+++|+||.+|++|.
T Consensus 255 I~DaPRf~~rGllvDvaRqf~s~~~vk~~Id~laa~Kln~~hlHLtddegwrleIk~~PkLT~iga~R~~de~~~Pq~g~ 334 (732)
T COG3525 255 IVDAPRFAWRGLLVDVARQFHSTDDVKRLIDQLAAHKLNVLHLHLTDDEGWRLEIKRYPKLTTIGAWRIPDEPDLPQLGY 334 (732)
T ss_pred cccCcccchhhhhHhhhhhcCCHHHHHHHHHHHHHhhcceEEEeeccCcceeeccccCCccccccccccCCCcCCccccc
Confidence 789999999999999999999999999999999999999999999999999999999999999999763
Q ss_pred -----CCCCCHHHHHHHHHHHHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhH
Q psy13745 70 -----EKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRV 144 (406)
Q Consensus 70 -----~~~YT~~ei~~lv~yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t 144 (406)
++|||++++++|++||+.|+|+||||||+|||+.+++..++......-.|.+.+ .... ..+..|||+-+-+
T Consensus 335 ~pe~~ggfytqd~~relv~yAsar~ItviPeiD~PgHa~aav~A~p~~~l~~a~~ds~~---sv~~-~~n~~ln~tl~~t 410 (732)
T COG3525 335 GPERMGGFYTQDDIRELVAYASARQITVIPEIDMPGHARAAVVAYPDLNLGRADPDSYD---SVQA-YLNPVLNPTLDPT 410 (732)
T ss_pred CcccccCcccHHHHHHHHHHHhhcCceecCCcCCcchhhhhhhhCccccccccCCCcch---hhhh-cccccccccccHH
Confidence 489999999999999999999999999999999998765541111011122111 0000 1233789999999
Q ss_pred HHHHHHHHHHHHhhccCCCCceEEecCCccccccccC-ChHHHHHHHh------------------------c-------
Q psy13745 145 YEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNH-TKSITDWMYA------------------------K------- 192 (406)
Q Consensus 145 ~~f~~~l~~e~~~~f~~~~~~~iHiGgDE~~~~~w~~-~~~~~~~~~~------------------------g------- 192 (406)
++|+++|++||+++||+. +|||||||+..++|+. +|.||+.|.+ |
T Consensus 411 ~~fldkv~dEv~~lfPs~---~iHiGgDE~~~~qwk~~sp~~q~l~~~~G~~d~~~lq~~fi~q~~k~l~~~Gr~~igW~ 487 (732)
T COG3525 411 YQFLDKVLDEVADLFPST---TIHIGGDEFIDGQWKASSPLVQALMEKLGNKDTFELQSYFITQVGKTLASKGRRLIGWD 487 (732)
T ss_pred HHHHHHHHHHHHHhCCcc---eEEeccchhccCeeeccCHHHHHHHHHhccCCcchhhHHHHHHHHHHHHhcCceEEeec
Confidence 999999999999999999 9999999999999999 9999998887 1
Q ss_pred ------------------cceeeCCCC----------------------------------cccccccchhhhcccCCcc
Q psy13745 193 ------------------FGAWVGEGN----------------------------------NWCSPYIGWQKVYDNDPIK 220 (406)
Q Consensus 193 ------------------~~~w~~~~~----------------------------------~~~~~~~~w~~~Y~~~P~~ 220 (406)
+++|.+... .|......-++.|.++|..
T Consensus 488 e~~~~~~~~~~~~t~~~~vm~W~~~~~ai~~akqg~dvv~tp~~~~ylD~~q~~~peepg~~~a~t~~l~r~~y~~~~~g 567 (732)
T COG3525 488 EGAHGGDVNGTALTANVTVMSWYGKDKAIELAKQGYDVVLTPAQFVYLDMLQIAAPEEPGYSWATTTPLERNKYAYDFAG 567 (732)
T ss_pred chhccCCCccccccCceEEEEEecchhhHHHHhhcccccccchhhhhhhhhcccccccCCCccccccccchhhhhhcccC
Confidence 123433210 0000000111134443332
Q ss_pred ccccccccCCCChhhhcccccceeeeccccccc-cccccchhhhHHHHHhhhccCCC-CChHHHHHHHHHHHHHHHHcCC
Q psy13745 221 LLDQTSLNISNNPELKSLIMGQEAALWSEQADA-ATLDGRLWPRASAMAERLWSNPA-SNWRAAEYRFLHQRERLVEIGL 298 (406)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~ilG~ea~lWsE~~~~-~~~~~~~~PR~~A~AE~~Ws~~~-~~~~~f~~RL~~~~~rl~~~Gi 298 (406)
.. ..+++++++++|.|+|+|+|++.+ ..+++|+|||++|+||++|++.+ .+|..|..|+..+..+++..+|
T Consensus 568 ~~-------~~~de~~k~~~G~q~~lWse~~~~~~~f~~~vfprl~a~aEraw~p~a~~Dw~~~~~r~~~~~~l~~~~~~ 640 (732)
T COG3525 568 KQ-------PINDELAKRILGVQAALWSEHIQTRGRFEYMVFPRLAAAAERAWTPMAFNDWLYYLDRLSAQLPLLVLISI 640 (732)
T ss_pred cc-------cCChHHhhhhhhhHHHHHHHHhhhhhHHHHHhcchHHHHHHhhCCchhhcchhhhhhhcchhcchhhhhcc
Confidence 21 123788999999999999999997 68999999999999999999976 4899999999999999999999
Q ss_pred CcccCCceeeecCCCceeEEEee-cCCCcceEEEeccCCCCcccCCCCCcCceeE--EeeeeeEEEEeeecccc
Q psy13745 299 AAESIEPEWCYQNEGLCGSVILT-PYASTYIRSYLDCGSKGTFQSHSGSINRVYS--ILFQVNATITANTFFGG 369 (406)
Q Consensus 299 ~~~~~~p~~c~~~~~~~~~~~~~-~~~~~~i~~~~~dg~~p~~~s~~~~~~e~Y~--l~v~~~~~I~A~t~~Ga 369 (406)
.+...+- +....++ ...+++. ......++|+++ +..|+.+++ .|. ..+....+++|.++..+
T Consensus 641 ~~~~~w~-~~~~~l~-~~~~~~l~~~g~~y~~~~~~-~~~~~g~l~------~~~~~~g~t~~~~l~~~~~~ed 705 (732)
T COG3525 641 PYNAWWG-YNLASLQ-YLEYAFLNTNGDWYYILGQK-PKDGGGHLK------KAIENTGKTLFNQLASQTYPED 705 (732)
T ss_pred ccccccc-ccccchh-HHHHHHhccCCcceEEecCC-CCCCCCcch------hhccCCCCCchhhccceeccCC
Confidence 8875421 1000011 1235554 345556666666 999998884 333 22345678888888643
No 10
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=1.7e-58 Score=458.84 Aligned_cols=247 Identities=24% Similarity=0.448 Sum_probs=192.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCcc---------------CCCCC
Q psy13745 8 QSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAY---------------SSEKI 72 (406)
Q Consensus 8 ~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~---------------~~~~~ 72 (406)
.+||+|||+||||+|+++||++||.||.+|||+|||||+| +||++++.+|+|+..|++ +.+++
T Consensus 1 ~~RG~mLD~aR~~~~~~~ik~~id~ma~~K~N~lhlHltD--~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (326)
T cd06564 1 EVRGFMLDVGRKYYSMDFLKDIIKTMSWYKMNDLQLHLND--NLIFNLDDMSTTVNNATYASDDVKSGNNYYNLTANDGY 78 (326)
T ss_pred CcceeEEEccCCCCCHHHHHHHHHHHHHcCCceEEEeecC--CcccccCCCchhhhhhhhhccccccccccCCCCCCCCc
Confidence 4899999999999999999999999999999999999999 899999999999986654 46789
Q ss_pred CCHHHHHHHHHHHHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHH
Q psy13745 73 YSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLY 152 (406)
Q Consensus 73 YT~~ei~~lv~yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~ 152 (406)
||++|+++||+||++|||+||||||+|||+.++++. ++++.|.... .....++|||++|+|++|+++|+
T Consensus 79 YT~~di~eiv~yA~~rgI~vIPEID~PGH~~a~~~~-----~pel~~~~~~------~~~~~~~l~~~~~~t~~f~~~l~ 147 (326)
T cd06564 79 YTKEEFKELIAYAKDRGVNIIPEIDSPGHSLAFTKA-----MPELGLKNPF------SKYDKDTLDISNPEAVKFVKALF 147 (326)
T ss_pred ccHHHHHHHHHHHHHcCCeEeccCCCcHHHHHHHHh-----hHHhcCCCcc------cCCCcccccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999997653 4566665321 12345789999999999999999
Q ss_pred HHHHhhcc--CCCCceEEecCCccccccccCChHHHHHHHh--------c--cc----------------------eeeC
Q psy13745 153 EEMTDLFR--TDLSGLFHMGGDEVNMNCWNHTKSITDWMYA--------K--FG----------------------AWVG 198 (406)
Q Consensus 153 ~e~~~~f~--~~~~~~iHiGgDE~~~~~w~~~~~~~~~~~~--------g--~~----------------------~w~~ 198 (406)
+|++++|+ ++ +|||||||+... -........|+.+ | .+ .|..
T Consensus 148 ~E~~~~f~~~~~---~~HiGgDE~~~~-~~~~~~~~~f~~~~~~~v~~~gk~~~~W~d~~~~~~~~~~l~~~~iv~~W~~ 223 (326)
T cd06564 148 DEYLDGFNPKSD---TVHIGADEYAGD-AGYAEAFRAYVNDLAKYVKDKGKTPRVWGDGIYYKGDTTVLSKDVIINYWSY 223 (326)
T ss_pred HHHHHhcCCCCC---EEEecccccccc-CccHHHHHHHHHHHHHHHHHcCCeEEEeCCcccCCCCcccCCCCeEEEeCCC
Confidence 99999999 78 999999999875 1222333444443 1 12 2332
Q ss_pred C----------C-------Ccc---------cccccchhhhcccCCccccccccccCCCChhhhcccccceeeecccccc
Q psy13745 199 E----------G-------NNW---------CSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQAD 252 (406)
Q Consensus 199 ~----------~-------~~~---------~~~~~~w~~~Y~~~P~~~~~~~~~~~~~~~~~~~~ilG~ea~lWsE~~~ 252 (406)
. | ..+ .....+|+++|++.|....... + ...++..++|+|||+|||+|+++
T Consensus 224 ~~~~~~~~~~~G~~vI~s~~~~~Y~~~~~~~~~~~~~~~~~y~~~~~~~~~~~--~-~~~~~~~~~ilG~~~~lW~E~~~ 300 (326)
T cd06564 224 GWADPKELLNKGYKIINTNDGYLYIVPGAGYYGDYLNTEDIYNNWTPNKFGGT--N-ATLPEGDPQILGGMFAIWNDDSD 300 (326)
T ss_pred cccCHHHHHHCCCcEEEeCCCcEEEeCCCccCCCccCHHHHHhcCCccccCCC--C-ccCCCCCCCcchhheeeecCCCC
Confidence 1 0 000 0123457778876543221000 0 01345679999999999999996
Q ss_pred c----cccccchhhhHHHHHhhhccC
Q psy13745 253 A----ATLDGRLWPRASAMAERLWSN 274 (406)
Q Consensus 253 ~----~~~~~~~~PR~~A~AE~~Ws~ 274 (406)
. .++++++|||++|+||++|++
T Consensus 301 ~~~t~~~~~~~~~pr~~a~Ae~~W~~ 326 (326)
T cd06564 301 AGISEVDIYDRIFPALPAFAEKTWGG 326 (326)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHhcCC
Confidence 3 689999999999999999985
No 11
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=100.00 E-value=3.1e-39 Score=317.32 Aligned_cols=144 Identities=23% Similarity=0.299 Sum_probs=124.2
Q ss_pred cceEEEeCCC-CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHh
Q psy13745 9 SARILLDTAR-NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLV 87 (406)
Q Consensus 9 ~RG~mlD~aR-~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~ 87 (406)
+||+|||+|| +|+++++||++||.||.+|+|+||||++|+ | +++++|++.. .+++||++|+++|++||++
T Consensus 1 ~RG~mlD~~R~~~~~~~~lk~~id~ma~~k~N~l~lhl~D~--f--~~~~~p~~~~-----~~~~yT~~ei~ei~~yA~~ 71 (301)
T cd06565 1 FRGVHLDLKRNAVPKVSYLKKLLRLLALLGANGLLLYYEDT--F--PYEGEPEVGR-----MRGAYTKEEIREIDDYAAE 71 (301)
T ss_pred CceEEEecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEecc--e--ecCCCccccc-----CCCCcCHHHHHHHHHHHHH
Confidence 6999999999 999999999999999999999999999994 4 4467888764 3578999999999999999
Q ss_pred cCCeecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhccCCCCceE
Q psy13745 88 RGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLF 167 (406)
Q Consensus 88 rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~~~~~~~i 167 (406)
|||+||||||+|||+.+++++.. +..+.+. ..++++|||++|+|++|+++|++|++++|+++ +|
T Consensus 72 ~gI~vIPeid~pGH~~~~l~~~~---~~~l~~~----------~~~~~~l~~~~~~t~~fi~~li~ev~~~f~s~---~~ 135 (301)
T cd06565 72 LGIEVIPLIQTLGHLEFILKHPE---FRHLREV----------DDPPQTLCPGEPKTYDFIEEMIRQVLELHPSK---YI 135 (301)
T ss_pred cCCEEEecCCCHHHHHHHHhCcc---ccccccc----------CCCCCccCCCChhHHHHHHHHHHHHHHhCCCC---eE
Confidence 99999999999999999776432 1122111 12357899999999999999999999999998 99
Q ss_pred EecCCccccc
Q psy13745 168 HMGGDEVNMN 177 (406)
Q Consensus 168 HiGgDE~~~~ 177 (406)
||||||++..
T Consensus 136 HIG~DE~~~~ 145 (301)
T cd06565 136 HIGMDEAYDL 145 (301)
T ss_pred EECCCccccc
Confidence 9999999864
No 12
>KOG2499|consensus
Probab=99.37 E-value=1.9e-13 Score=137.68 Aligned_cols=71 Identities=32% Similarity=0.478 Sum_probs=63.2
Q ss_pred EeccCCCCcccCCCCCcCceeEEeee---eeEEEEeeeccccccccceeeeeEEeccCCCeEecccCcEEeeecCCCCC
Q psy13745 331 YLDCGSKGTFQSHSGSINRVYSILFQ---VNATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406 (406)
Q Consensus 331 ~~~dg~~p~~~s~~~~~~e~Y~l~v~---~~~~I~A~t~~Ga~~gleTl~Qli~~~~~~~~~~~~~~~~I~D~P~f~~R 406 (406)
+..|.+.|++++ +||||+|.|+ ..+.|+|.|||||+||||||+||++.+...+ .++++.+.|+|+|||+||
T Consensus 111 ~~~c~s~p~l~~----~dEsYtL~V~~~~~~a~i~A~tvwGAlrglETfSqLv~~d~~~~-~~~~~~~~I~D~PrF~hR 184 (542)
T KOG2499|consen 111 TVECPSLPTLHG----VDESYTLVVSTTATFAVILANTVWGALRGLETFSQLVWGDSIGG-LFMIATAYIQDKPRFGHR 184 (542)
T ss_pred cCCCCCcCcccc----cccceEEEeecCcceEEEeehhHHHHHHHHHHHHHHheeccCCc-eEEeeeeeEeccCCCccc
Confidence 336889999887 7999999996 3789999999999999999999999987554 567799999999999999
No 13
>PF14845 Glycohydro_20b2: beta-acetyl hexosaminidase like; PDB: 1O7A_B 2GJX_C 2GK1_D 1NOW_B 1NOU_B 3LMY_B 1NP0_A 3S6T_A 3OZO_A 3NSN_A ....
Probab=98.31 E-value=7.8e-08 Score=82.94 Aligned_cols=34 Identities=50% Similarity=0.688 Sum_probs=27.4
Q ss_pred CcCceeEEee-ee--eEEEEeeeccccccccceeeee
Q psy13745 346 SINRVYSILF-QV--NATITANTFFGGHHGAETLSQL 379 (406)
Q Consensus 346 ~~~e~Y~l~v-~~--~~~I~A~t~~Ga~~gleTl~Ql 379 (406)
++||+|+|.| +. .++|+|.|+||++||||||+||
T Consensus 92 ~~DESY~L~v~s~~~~~~I~A~tv~GalrgLETlsQL 128 (128)
T PF14845_consen 92 GMDESYSLSVPSTNGQATITANTVWGALRGLETLSQL 128 (128)
T ss_dssp T----EEEEETSSSEEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEecCCceEEEEECChhhhhHHHHHHhhC
Confidence 5799999999 43 5999999999999999999997
No 14
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.33 E-value=0.0037 Score=62.08 Aligned_cols=151 Identities=15% Similarity=0.157 Sum_probs=93.5
Q ss_pred CcceEEEeCCCC--CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcc-cccCcCCCcccc-CccCCCCCCCHHHHHHHHH
Q psy13745 8 QSARILLDTARN--FYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFP-FESRKYPTLTQS-GAYSSEKIYSREDIREIVH 83 (406)
Q Consensus 8 ~~RG~mlD~aR~--~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r-~e~~~~P~l~~~-ga~~~~~~YT~~ei~~lv~ 83 (406)
+.||+=|++..+ +...+.+.++|+.|...++|++-++..- .|-. +.++-.|..... |. .+..-..+=++.+|+
T Consensus 1 E~RgvWi~~~~~~~~~~~~~~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~p~s~~~~g~--~~~~pg~DpL~~~I~ 77 (311)
T PF02638_consen 1 EFRGVWISTVANIDWPSKEQIDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIEPWSGYLTGK--QGKDPGFDPLEFMIE 77 (311)
T ss_pred CeEEEEEeecCCCCCCCHHHHHHHHHHHHHcCCCEEEEEEEe-CcEEEecccccccccccCCC--CCCCCCccHHHHHHH
Confidence 469999998764 4467899999999999999999988764 3443 234444422111 11 111224677999999
Q ss_pred HHHhcCCeeccccc--CCccchhhh-ccccccccccccccCCCcCcccc--ccCCCCCCCCCChhHHHHHHHHHHHHHhh
Q psy13745 84 YGLVRGVHVIPELD--APAHVGEGW-NSIEKQKDELLVCFKKEPWTKFC--VEPPCGQLNPVSDRVYEVLGGLYEEMTDL 158 (406)
Q Consensus 84 yA~~rgI~viPEid--~PGH~~a~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~t~~f~~~l~~e~~~~ 158 (406)
-|.+|||+|.+=+. +.++....+ +..+ ..+ +.+...|.... ......-|||++|++.+|+.+++.|++.-
T Consensus 78 eaHkrGlevHAW~~~~~~~~~~~~~~~~~p----~~~-~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~ 152 (311)
T PF02638_consen 78 EAHKRGLEVHAWFRVGFNAPDVSHILKKHP----EWF-AVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKN 152 (311)
T ss_pred HHHHcCCEEEEEEEeecCCCchhhhhhcCc----hhh-eecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhc
Confidence 99999999998872 222211111 1111 111 11111111000 00112258999999999999999999998
Q ss_pred ccCCCCceEEe
Q psy13745 159 FRTDLSGLFHM 169 (406)
Q Consensus 159 f~~~~~~~iHi 169 (406)
.+=+ =||+
T Consensus 153 YdvD---GIhl 160 (311)
T PF02638_consen 153 YDVD---GIHL 160 (311)
T ss_pred CCCC---eEEe
Confidence 8855 5775
No 15
>PF02838 Glyco_hydro_20b: Glycosyl hydrolase family 20, domain 2; InterPro: IPR015882 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside []. This entry represents the alpha and beta subunit of beta-N-acetylhexosaminidase. It contains a similar fold but lacks the catalytic centre.; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 3SUT_A 3SUS_A 3GH7_A 3SUR_A 3SUW_A 3SUV_A 3SUU_A 3GH5_A 3GH4_A 2J4G_B ....
Probab=97.16 E-value=8.5e-05 Score=63.26 Aligned_cols=49 Identities=29% Similarity=0.245 Sum_probs=40.3
Q ss_pred CceeEEeee-eeEEEEeeeccccccccceeeeeEEeccCCCeEecccCcEEeee
Q psy13745 348 NRVYSILFQ-VNATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDG 400 (406)
Q Consensus 348 ~e~Y~l~v~-~~~~I~A~t~~Ga~~gleTl~Qli~~~~~~~~~~~~~~~~I~D~ 400 (406)
+|+|+|.|+ ..++|+|.+..|.++|++||.||+..+. .+ .++.++|.|+
T Consensus 75 ~E~Y~L~i~~~~I~I~a~~~~G~~yg~qTL~Qll~~~~-~~---~lp~~~I~D~ 124 (124)
T PF02838_consen 75 EEGYRLSISPKGITIEASDPAGLFYGLQTLRQLLRQSG-NG---TLPCVEIEDY 124 (124)
T ss_dssp TT-EEEEEESSEEEEEESSHHHHHHHHHHHHHHSBTCS--C---EEEEEEEEE-
T ss_pred CcceEEEEECCEEEEEEcCchHHHHHHHHHHHHhhccC-CC---ccceEEEEeC
Confidence 599999995 6999999999999999999999999752 12 4578899995
No 16
>PF13287 Fn3_assoc: Fn3 associated
Probab=97.10 E-value=0.00089 Score=49.97 Aligned_cols=53 Identities=26% Similarity=0.298 Sum_probs=37.2
Q ss_pred Eeec-CCCcceEEEeccCCCCcccCCCCCcCceeE--EeeeeeEEEEeeeccccccccceeee
Q psy13745 319 ILTP-YASTYIRSYLDCGSKGTFQSHSGSINRVYS--ILFQVNATITANTFFGGHHGAETLSQ 378 (406)
Q Consensus 319 ~~~~-~~~~~i~~~~~dg~~p~~~s~~~~~~e~Y~--l~v~~~~~I~A~t~~Ga~~gleTl~Q 378 (406)
.|++ .++..|+||++ |+.|+.+| ..|+ |.|+.+++|+|.++..+..-.+..++
T Consensus 2 ~L~s~~~~~~I~YT~D-Gs~Pt~~s------~~Y~~pi~i~~~~tikA~a~~~~g~~S~v~t~ 57 (59)
T PF13287_consen 2 TLTSPDPGAKIYYTTD-GSEPTTNS------ILYTGPITIKKGTTIKAIAVDDGGNSSDVVTK 57 (59)
T ss_pred EEECCCCCCEEEEeCC-CCCCCCCC------CccccCEEeCCCCEEEEEEEeCCCCccceEEe
Confidence 4554 56777777766 99999777 3555 66666679999999866555554443
No 17
>COG3525 Chb N-acetyl-beta-hexosaminidase [Carbohydrate transport and metabolism]
Probab=96.56 E-value=0.00081 Score=71.37 Aligned_cols=65 Identities=22% Similarity=0.223 Sum_probs=54.2
Q ss_pred CCCcccCCCCCcCceeEEee-eeeEEEEeeeccccccccceeeeeEEeccCCCeEecccCcEEeeecCCCCC
Q psy13745 336 SKGTFQSHSGSINRVYSILF-QVNATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406 (406)
Q Consensus 336 ~~p~~~s~~~~~~e~Y~l~v-~~~~~I~A~t~~Ga~~gleTl~Qli~~~~~~~~~~~~~~~~I~D~P~f~~R 406 (406)
+-|+..+ |.|.|.+ +..++|+|..-.|.++|..||-||+..-.+..+.+.++.++|.|+|||.||
T Consensus 199 ~~p~~~~------e~y~la~~d~ai~v~a~~~aG~~y~~~tl~qL~t~a~s~qg~~~~p~~~I~DaPRf~~r 264 (732)
T COG3525 199 KGPTLGE------EAYRLAINDKAIKVTAHDLAGLFYADGTLLQLDTSADSFQGDIRFPAVTIVDAPRFAWR 264 (732)
T ss_pred CCCcccc------hhheeecccceeEEeeccccchhhhHHHHHhhhccccccCCCeeeeeeecccCcccchh
Confidence 4555555 8999999 578999999999999999999999883334555666788899999999998
No 18
>PF13290 CHB_HEX_C_1: Chitobiase/beta-hexosaminidase C-terminal domain
Probab=96.47 E-value=0.0064 Score=46.58 Aligned_cols=48 Identities=27% Similarity=0.275 Sum_probs=36.4
Q ss_pred EEEee-cCCCcceEEEeccCCCCcccCCCCCcCceeE--EeeeeeEEEEeeecccccc
Q psy13745 317 SVILT-PYASTYIRSYLDCGSKGTFQSHSGSINRVYS--ILFQVNATITANTFFGGHH 371 (406)
Q Consensus 317 ~~~~~-~~~~~~i~~~~~dg~~p~~~s~~~~~~e~Y~--l~v~~~~~I~A~t~~Ga~~ 371 (406)
.+.|+ ...+..|+|+++ |++|+.+|+ .|+ |.|.+.++|+|.+|..+.+
T Consensus 11 ~v~l~~~~~~~~IyYT~D-Gs~Pt~~S~------~Y~~Pi~i~~~ttVka~a~~~~g~ 61 (67)
T PF13290_consen 11 TVTLSTADPDATIYYTTD-GSEPTPSSP------LYTGPITITGTTTVKARAFDPDGN 61 (67)
T ss_pred EEEEEeCCCCCEEEEEcC-CCccccCCC------eeccCEEecCCEEEEEEEEcCCCc
Confidence 56665 466777777777 999999984 664 6667889999999985543
No 19
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.079 Score=54.46 Aligned_cols=151 Identities=13% Similarity=0.168 Sum_probs=92.1
Q ss_pred CCcceEEEe--CCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcc-cccCcCCCccc-cCccCCCCCCCHHHHHHHH
Q psy13745 7 VQSARILLD--TARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFP-FESRKYPTLTQ-SGAYSSEKIYSREDIREIV 82 (406)
Q Consensus 7 ~~~RG~mlD--~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r-~e~~~~P~l~~-~ga~~~~~~YT~~ei~~lv 82 (406)
=+.||+=|| .++..+.-..+++.+|.+..+++|++-.-...+ |.. +.+...|.-.. .|..+... -.+=+.++|
T Consensus 45 ~eiRGvWltn~~~~v~~~~~el~~~ld~l~~ln~NTv~~qV~~~-G~~lypS~~~p~s~~~~~~~~~~~--g~DpLa~~I 121 (418)
T COG1649 45 QEIRGVWLTNADSRVLFQRQELKDILDDLQKLNFNTVYPQVWND-GDALYPSAVLPWSDGLPGVLGVDP--GYDPLAFVI 121 (418)
T ss_pred ccceeEEEecCCCcccccHHHHHHHHHHHHHcCCceeEEEEecC-ccccccccccccccCcCcccCCCC--CCChHHHHH
Confidence 467999999 667778899999999999999999999876644 222 22222222111 01011111 235689999
Q ss_pred HHHHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccC--CCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 83 HYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEP--PCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 83 ~yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
+-|.+|||+|+|=++.-.=+-. ....... .+.-...+...|..+.... ....|||..|++-+|+.+++.|+..-.+
T Consensus 122 ~~AHkr~l~v~aWf~~~~~a~~-~s~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~Yd 199 (418)
T COG1649 122 AEAHKRGLEVHAWFNPYRMAPP-TSPLTKR-HPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYD 199 (418)
T ss_pred HHHHhcCCeeeechhhcccCCC-CChhHhh-CCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCC
Confidence 9999999999998875432211 1100000 0110011111121111110 1346899999999999999999998777
Q ss_pred CC
Q psy13745 161 TD 162 (406)
Q Consensus 161 ~~ 162 (406)
-+
T Consensus 200 vD 201 (418)
T COG1649 200 VD 201 (418)
T ss_pred CC
Confidence 55
No 20
>PF03174 CHB_HEX_C: Chitobiase/beta-hexosaminidase C-terminal domain; InterPro: IPR004867 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This short domain is found in members of the glycoside hydrolase family 20 (GH20 from CAZY) and represents the C-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. It is composed of a beta sandwich structure []. The function of this domain is unknown. ; GO: 0004563 beta-N-acetylhexosaminidase activity, 0005975 carbohydrate metabolic process; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=95.96 E-value=0.0072 Score=47.04 Aligned_cols=55 Identities=29% Similarity=0.365 Sum_probs=26.4
Q ss_pred eEEEeec-CCCcceEEEeccCCCCcccCCCCCcCceeE--EeeeeeEEEEeeeccccccccceee
Q psy13745 316 GSVILTP-YASTYIRSYLDCGSKGTFQSHSGSINRVYS--ILFQVNATITANTFFGGHHGAETLS 377 (406)
Q Consensus 316 ~~~~~~~-~~~~~i~~~~~dg~~p~~~s~~~~~~e~Y~--l~v~~~~~I~A~t~~Ga~~gleTl~ 377 (406)
..|.|+. .++..|+|+++ |+.|+..| ..|+ |.|....+|+|.++-++..-.++.+
T Consensus 16 ~~v~l~~~~~~~~I~YT~D-Gs~Pt~~s------~~Y~~Pi~i~~~~~vka~a~~~~g~~s~v~t 73 (75)
T PF03174_consen 16 QTVTLSSDTPGATIYYTLD-GSEPTKSS------PLYTGPITIPESGTVKARAFDNGGNVSEVVT 73 (75)
T ss_dssp TEEEEE-SSTTSEEEEESS-SSSS----------EE--CCC--B--S--EEEEE-TTS-B-----
T ss_pred eEEEEEeCCCCCEEEEEcC-CCcccccC------cccCcCEEeCCCcEEEEEEEcCCCCcCcccc
Confidence 3666764 67788887777 99999888 3666 5666666799999986666555544
No 21
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=95.12 E-value=0.054 Score=52.79 Aligned_cols=120 Identities=18% Similarity=0.170 Sum_probs=64.3
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccC
Q psy13745 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDA 98 (406)
Q Consensus 19 ~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~ 98 (406)
+-...+..|++||-.|.+++-.+.+ |.||.-. ... ..+.....+...+|+|||+||+++||.|+-=.
T Consensus 27 ~g~~t~~~k~yIDfAa~~G~eYvlv----D~GW~~~--~~~-----~~~d~~~~~~~~dl~elv~Ya~~KgVgi~lw~-- 93 (273)
T PF10566_consen 27 HGATTETQKRYIDFAAEMGIEYVLV----DAGWYGW--EKD-----DDFDFTKPIPDFDLPELVDYAKEKGVGIWLWY-- 93 (273)
T ss_dssp BSSSHHHHHHHHHHHHHTT-SEEEE----BTTCCGS----T-----TT--TT-B-TT--HHHHHHHHHHTT-EEEEEE--
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEe----ccccccc--ccc-----ccccccccCCccCHHHHHHHHHHcCCCEEEEE--
Confidence 3467999999999999999998887 7899531 000 01112345778999999999999998776433
Q ss_pred Cccchhhhcccccc--ccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHh
Q psy13745 99 PAHVGEGWNSIEKQ--KDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTD 157 (406)
Q Consensus 99 PGH~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~ 157 (406)
|....+...... ....+.-. +.|+--+++ .+-++-.+.++.++.++|+++.++
T Consensus 94 --~~~~~~~~~~~~~~~~~~f~~~--~~~Gv~GvK--idF~~~d~Q~~v~~y~~i~~~AA~ 148 (273)
T PF10566_consen 94 --HSETGGNVANLEKQLDEAFKLY--AKWGVKGVK--IDFMDRDDQEMVNWYEDILEDAAE 148 (273)
T ss_dssp --ECCHTTBHHHHHCCHHHHHHHH--HHCTEEEEE--EE--SSTSHHHHHHHHHHHHHHHH
T ss_pred --eCCcchhhHhHHHHHHHHHHHH--HHcCCCEEe--eCcCCCCCHHHHHHHHHHHHHHHH
Confidence 322211000000 00011100 011111111 122455678888899999988876
No 22
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=94.28 E-value=0.11 Score=52.73 Aligned_cols=167 Identities=14% Similarity=0.223 Sum_probs=91.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcc-cccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccCC
Q psy13745 21 YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFP-FESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAP 99 (406)
Q Consensus 21 ~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r-~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~P 99 (406)
.|.+.+++-|+.|...++|++.++.. +|. +| |+ .+.|.-+.+..+++.|+++||.||.-+ |
T Consensus 7 ~~~e~~~~d~~~m~~~G~n~vri~~~---~W~~lE----P~---------eG~ydF~~lD~~l~~a~~~Gi~viL~~--~ 68 (374)
T PF02449_consen 7 WPEEEWEEDLRLMKEAGFNTVRIGEF---SWSWLE----PE---------EGQYDFSWLDRVLDLAAKHGIKVILGT--P 68 (374)
T ss_dssp S-CCHHHHHHHHHHHHT-SEEEE-CC---EHHHH-----SB---------TTB---HHHHHHHHHHHCTT-EEEEEE--C
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEe---chhhcc----CC---------CCeeecHHHHHHHHHHHhccCeEEEEe--c
Confidence 46688999999999999999998642 342 22 21 356788899999999999999999644 4
Q ss_pred ccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhccCC-CCceEEecCCcccccc
Q psy13745 100 AHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTD-LSGLFHMGGDEVNMNC 178 (406)
Q Consensus 100 GH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~~~-~~~~iHiGgDE~~~~~ 178 (406)
.+..-.|-. ..+|+....+.... ..........|+.+|...+.+..+++.+++-+.+. ...-+||+ -|....
T Consensus 69 ~~~~P~Wl~---~~~Pe~~~~~~~g~--~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~~~p~vi~~~i~-NE~~~~- 141 (374)
T PF02449_consen 69 TAAPPAWLY---DKYPEILPVDADGR--RRGFGSRQHYCPNSPAYREYARRFIRALAERYGDHPAVIGWQID-NEPGYH- 141 (374)
T ss_dssp TTTS-HHHH---CCSGCCC-B-TTTS--BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEC-CSTTCT-
T ss_pred ccccccchh---hhcccccccCCCCC--cCccCCccccchhHHHHHHHHHHHHHHHHhhccccceEEEEEec-cccCcC-
Confidence 444433431 12333322111100 00001123467889999999999999999877643 12345664 354432
Q ss_pred ccCChHH----HHHHHhccce-------eeCCCCcccccccchhhhc
Q psy13745 179 WNHTKSI----TDWMYAKFGA-------WVGEGNNWCSPYIGWQKVY 214 (406)
Q Consensus 179 w~~~~~~----~~~~~~g~~~-------w~~~~~~~~~~~~~w~~~Y 214 (406)
-.-||.| ++||++.++. |.. ..|...+.+|++|-
T Consensus 142 ~~~~~~~~~~f~~wLk~kY~ti~~LN~aWgt--~~ws~~~~~f~~v~ 186 (374)
T PF02449_consen 142 RCYSPACQAAFRQWLKEKYGTIEALNRAWGT--AFWSQRYSSFDEVP 186 (374)
T ss_dssp S--SHHHHHHHHHHHHHHHSSHHHHHHHHTT--TGGG---SSGGG--
T ss_pred cCCChHHHHHHHHHHHHHhCCHHHHHHHHcC--CcccCccCcHHhcC
Confidence 2346665 4567775432 322 23444556776664
No 23
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=94.02 E-value=0.45 Score=47.39 Aligned_cols=122 Identities=17% Similarity=0.186 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCc-ccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccCCcc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSF-PFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAPAH 101 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~-r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~PGH 101 (406)
.+.+.++|+.+...++|.+-+-+-||.|. .+.+ ..|...+.|+.. .+ -.|+++|++.++++||.+|--|=++-=
T Consensus 12 ~~~~~~~~~~i~~t~lNavVIDvKdd~G~i~y~s-~~~~~~~~ga~~---~~-i~D~~~l~~~l~e~gIY~IARIv~FkD 86 (316)
T PF13200_consen 12 PERLDKLLDLIKRTELNAVVIDVKDDDGNITYDS-QVPLAREIGAVK---PY-IKDLKALVKKLKEHGIYPIARIVVFKD 86 (316)
T ss_pred HHHHHHHHHHHHhcCCceEEEEEecCCceEEecC-CCchhhhccccc---cc-ccCHHHHHHHHHHCCCEEEEEEEEecC
Confidence 46789999999999999999999999987 2222 445555566532 22 479999999999999999977755532
Q ss_pred chhhhcccccccccccc--ccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhh
Q psy13745 102 VGEGWNSIEKQKDELLV--CFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDL 158 (406)
Q Consensus 102 ~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~ 158 (406)
...+-+ .|.++ -.+..+|.+.. ...=+||.++++.+.+-+|-+|++.+
T Consensus 87 ~~la~~------~pe~av~~~~G~~w~d~~---~~~WvnP~~~evw~Y~i~IA~Eaa~~ 136 (316)
T PF13200_consen 87 PVLAEA------HPEWAVKTKDGSVWRDNE---GEAWVNPYSKEVWDYNIDIAKEAAKL 136 (316)
T ss_pred hHHhhh------ChhhEEECCCCCcccCCC---CCccCCCCCHHHHHHHHHHHHHHHHc
Confidence 211111 12222 22334554321 12358999999999999999998863
No 24
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=93.72 E-value=0.2 Score=39.48 Aligned_cols=68 Identities=15% Similarity=0.122 Sum_probs=39.6
Q ss_pred HHHHcCCCcccCCceeeecCCCceeEEEeecCCCcceEEEeccCCCCcccCCCCCcCceeEEeeeeeEEEEeeeccc
Q psy13745 292 RLVEIGLAAESIEPEWCYQNEGLCGSVILTPYASTYIRSYLDCGSKGTFQSHSGSINRVYSILFQVNATITANTFFG 368 (406)
Q Consensus 292 rl~~~Gi~~~~~~p~~c~~~~~~~~~~~~~~~~~~~i~~~~~dg~~p~~~s~~~~~~e~Y~l~v~~~~~I~A~t~~G 368 (406)
||++.||+|+-..|+....+ + - ..+-..+++..|.|+++++..... ++..+.+.++..+.|.+.+.-|
T Consensus 2 kLd~aGi~YRvP~pga~i~~-g-~-l~~n~~~pg~~i~Yt~dgg~~w~~------Y~~p~~~~v~~~v~vr~~s~~G 69 (78)
T cd02847 2 KLDKAGIDYRLPVPGAKVEN-G-K-LEMNVSLPGLTLQYSTDGGKNWNI------YDAAAKPVVSGDVQIRSVSFDG 69 (78)
T ss_pred cHHhcCCccccCCCCeEEEc-C-E-EEEeccCCCcEEEEEecCCccCee------ccccccccccccEEEEEEcCCC
Confidence 68999999998777754432 2 1 122246788999999994422222 1222233344555666655443
No 25
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=92.97 E-value=1.1 Score=38.96 Aligned_cols=123 Identities=17% Similarity=0.091 Sum_probs=78.2
Q ss_pred HHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccCCccchhhh
Q psy13745 27 KKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGW 106 (406)
Q Consensus 27 k~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~PGH~~a~~ 106 (406)
+++++.|...+.|.+-+..-+-.||. -||.= .|. ....++++=++|+|+-|+++||+|+-=+|.--+..+.-
T Consensus 3 ~~~~~~lk~~~v~si~i~a~~h~g~a----yYPt~--~~~--~hp~L~~Dllge~v~a~h~~Girv~ay~~~~~d~~~~~ 74 (132)
T PF14871_consen 3 EQFVDTLKEAHVNSITIFAKCHGGYA----YYPTK--VGP--RHPGLKRDLLGEQVEACHERGIRVPAYFDFSWDEDAAE 74 (132)
T ss_pred HHHHHHHHHhCCCEEEEEcccccEEE----EccCC--CCc--CCCCCCcCHHHHHHHHHHHCCCEEEEEEeeecChHHHH
Confidence 67899999999999999776666664 24422 222 23456777789999999999999999998886666543
Q ss_pred ccccccccccccccCCCcCcc-ccccCCCCCCCCCChhHHHHHHHHHHHHHhhccCC
Q psy13745 107 NSIEKQKDELLVCFKKEPWTK-FCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTD 162 (406)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~~~ 162 (406)
++.... ....+..|... ....+....+|+ |..-.+++...++|+++.++-+
T Consensus 75 ~HPeW~----~~~~~G~~~~~~~~~~~~~~~~c~-ns~Y~e~~~~~i~Ei~~~y~~D 126 (132)
T PF14871_consen 75 RHPEWF----VRDADGRPMRGERFGYPGWYTCCL-NSPYREFLLEQIREILDRYDVD 126 (132)
T ss_pred hCCcee----eECCCCCCcCCCCcCCCCceecCC-CccHHHHHHHHHHHHHHcCCCC
Confidence 322211 01111111000 000111224565 4456699999999999988643
No 26
>smart00642 Aamy Alpha-amylase domain.
Probab=91.24 E-value=0.76 Score=41.40 Aligned_cols=75 Identities=17% Similarity=0.273 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeC------CCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeeccc
Q psy13745 22 TLDNIKKTIDGMAVNKLNYFHWHITDS------QSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPE 95 (406)
Q Consensus 22 ~~~~ik~~id~ma~~KlN~lh~Hl~D~------q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPE 95 (406)
..+.|.+-++.++.+++|.+++--.-. ..+.+....|-.+.. .+=|.+|++++|+-|+++||+||-+
T Consensus 17 ~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~-------~~Gt~~d~~~lv~~~h~~Gi~vilD 89 (166)
T smart00642 17 DLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDP-------RFGTMEDFKELVDAAHARGIKVILD 89 (166)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCc-------ccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 477788888999999999999853211 112222222222211 1128899999999999999999998
Q ss_pred ccCCccchh
Q psy13745 96 LDAPAHVGE 104 (406)
Q Consensus 96 id~PGH~~a 104 (406)
+ +|.|+..
T Consensus 90 ~-V~NH~~~ 97 (166)
T smart00642 90 V-VINHTSD 97 (166)
T ss_pred E-CCCCCCC
Confidence 8 6778764
No 27
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=91.23 E-value=2.3 Score=46.33 Aligned_cols=119 Identities=13% Similarity=0.134 Sum_probs=71.2
Q ss_pred HHHHHHHHHhCCCcEEEEEEe-eC---CCcccccCcCCCccccCccCCCCCC-CHHHHHHHHHHHHhcCCeecccccCCc
Q psy13745 26 IKKTIDGMAVNKLNYFHWHIT-DS---QSFPFESRKYPTLTQSGAYSSEKIY-SREDIREIVHYGLVRGVHVIPELDAPA 100 (406)
Q Consensus 26 ik~~id~ma~~KlN~lh~Hl~-D~---q~~r~e~~~~P~l~~~ga~~~~~~Y-T~~ei~~lv~yA~~rgI~viPEid~PG 100 (406)
+.++||.+..+++|.+++=-. +. .+|.+....| |.++..| |.+|+|+||+-|.++||.||-.+ ++.
T Consensus 159 ~~~l~dyl~~LGvt~i~L~Pi~e~~~~~~wGY~~~~y--------~~~~~~~Gt~~dlk~lV~~~H~~Gi~VilD~-V~N 229 (613)
T TIGR01515 159 ADQLIPYVKELGFTHIELLPVAEHPFDGSWGYQVTGY--------YAPTSRFGTPDDFMYFVDACHQAGIGVILDW-VPG 229 (613)
T ss_pred HHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC--------cccccccCCHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence 445679999999999998321 11 1233333222 1222233 79999999999999999999887 468
Q ss_pred cchhhhcccc-ccccccc--cccC---CCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 101 HVGEGWNSIE-KQKDELL--VCFK---KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 101 H~~a~~~~~~-~~~~~~~--~~~~---~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
|+..-..... ....+.. .+.. ...|. ...+|..++++.+|+.++++-.++-|.
T Consensus 230 H~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~-------~~~~~~~~~~Vr~~l~~~~~~W~~ey~ 288 (613)
T TIGR01515 230 HFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWG-------TLIFDYGRPEVRNFLVANALYWAEFYH 288 (613)
T ss_pred CcCCccchhhccCCCcceeccCCccCcCCCCC-------CceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 8863110000 0000000 0000 01121 124688899999999999998887654
No 28
>PRK14706 glycogen branching enzyme; Provisional
Probab=89.07 E-value=4 Score=44.68 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=73.2
Q ss_pred CCCH-HHHHHHHHHHHhCCCcEEEEEEeeC----CCcccccCcCCCccccCccCCCCCC-CHHHHHHHHHHHHhcCCeec
Q psy13745 20 FYTL-DNIKKTIDGMAVNKLNYFHWHITDS----QSFPFESRKYPTLTQSGAYSSEKIY-SREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 20 ~~~~-~~ik~~id~ma~~KlN~lh~Hl~D~----q~~r~e~~~~P~l~~~ga~~~~~~Y-T~~ei~~lv~yA~~rgI~vi 93 (406)
|.+. +.+.++|+-+..+++|.+++--.-. .+|-+....| |.+...| |.+|+|.||+-|.++||.||
T Consensus 163 ~~ty~~~~~~l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~--------~~~~~~~g~~~~~~~lv~~~H~~gi~Vi 234 (639)
T PRK14706 163 FLNYRELAHRLGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGY--------YAPTSRLGTPEDFKYLVNHLHGLGIGVI 234 (639)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEccchhcCCCCCCCCcCcccc--------cccccccCCHHHHHHHHHHHHHCCCEEE
Confidence 4453 3445677899999999988743211 1222222111 2233334 89999999999999999999
Q ss_pred ccccCCccchhh---hccccccccccc--cccC---CCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 94 PELDAPAHVGEG---WNSIEKQKDELL--VCFK---KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 94 PEid~PGH~~a~---~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
.++ ++.|+..- +...... +.. .... ...|++ ..+|-.++++.+||.+.+.-.++-|.
T Consensus 235 lD~-v~nH~~~~~~~l~~~dg~--~~y~~~~~~~g~~~~w~~-------~~~~~~~~eVr~~l~~~~~~W~~e~~ 299 (639)
T PRK14706 235 LDW-VPGHFPTDESGLAHFDGG--PLYEYADPRKGYHYDWNT-------YIFDYGRNEVVMFLIGSALKWLQDFH 299 (639)
T ss_pred EEe-cccccCcchhhhhccCCC--cceeccCCcCCcCCCCCC-------cccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 887 56887531 1100000 000 0000 011221 23678899999999999888887554
No 29
>PRK12313 glycogen branching enzyme; Provisional
Probab=88.90 E-value=5 Score=43.85 Aligned_cols=124 Identities=13% Similarity=0.112 Sum_probs=73.1
Q ss_pred CCHHH-HHHHHHHHHhCCCcEEEEEEee----CCCcccccCcCCCccccCccCCCC-CCCHHHHHHHHHHHHhcCCeecc
Q psy13745 21 YTLDN-IKKTIDGMAVNKLNYFHWHITD----SQSFPFESRKYPTLTQSGAYSSEK-IYSREDIREIVHYGLVRGVHVIP 94 (406)
Q Consensus 21 ~~~~~-ik~~id~ma~~KlN~lh~Hl~D----~q~~r~e~~~~P~l~~~ga~~~~~-~YT~~ei~~lv~yA~~rgI~viP 94 (406)
-+... +.++||.+..+++|.++|=-.= ..+|.+....| +..+. +=|.+|+|+||+-|.++||.||-
T Consensus 167 g~~~~~~~~ll~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y--------~~i~~~~Gt~~d~k~lv~~~H~~Gi~Vil 238 (633)
T PRK12313 167 LSYRELADELIPYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGY--------FAPTSRYGTPEDFMYLVDALHQNGIGVIL 238 (633)
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEeCchhcCCCCCCCCCCCcCc--------CcCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 34444 4467899999999999975321 11233322222 12222 23899999999999999999999
Q ss_pred cccCCccchhhhcccc-cccccccc--ccC---CCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 95 ELDAPAHVGEGWNSIE-KQKDELLV--CFK---KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 95 Eid~PGH~~a~~~~~~-~~~~~~~~--~~~---~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
.+ ++.|+..--.... ....+... ... ...|. ...||-.++++.+++.+++.-.++-|.
T Consensus 239 D~-V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-------~~~~n~~~~~vr~~l~~~~~~W~~~~~ 302 (633)
T PRK12313 239 DW-VPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWG-------ALNFDLGKNEVRSFLISSALFWLDEYH 302 (633)
T ss_pred EE-CCCCCCCCcccccccCCCcceeecCCCCCcCCCCC-------CcccCCCCHHHHHHHHHHHHHHHHHhC
Confidence 87 4788763100000 00000000 000 00121 124788899999999999888877554
No 30
>PLN02960 alpha-amylase
Probab=87.54 E-value=5.4 Score=44.94 Aligned_cols=124 Identities=9% Similarity=0.105 Sum_probs=74.9
Q ss_pred CCHHHH-HHHHHHHHhCCCcEEEEEEee----CCCcccccCcCCCccccCccCCCCCC-CHHHHHHHHHHHHhcCCeecc
Q psy13745 21 YTLDNI-KKTIDGMAVNKLNYFHWHITD----SQSFPFESRKYPTLTQSGAYSSEKIY-SREDIREIVHYGLVRGVHVIP 94 (406)
Q Consensus 21 ~~~~~i-k~~id~ma~~KlN~lh~Hl~D----~q~~r~e~~~~P~l~~~ga~~~~~~Y-T~~ei~~lv~yA~~rgI~viP 94 (406)
-+...+ .+.|+.+..+++|.+.+--.- ..+|-+....| |.+...| |.+|++.||+-|.++||.||-
T Consensus 413 gtf~~~~e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~~y--------fa~~~~yGtp~dfk~LVd~aH~~GI~VIL 484 (897)
T PLN02960 413 SSFKEFTQKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVTNF--------FAVSSRFGTPDDFKRLVDEAHGLGLLVFL 484 (897)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccC--------CCcccccCCHHHHHHHHHHHHHCCCEEEE
Confidence 344445 477999999999999986432 22333322222 2222223 899999999999999999998
Q ss_pred cccCCccchhh----hccccccc--cccccccC-CCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 95 ELDAPAHVGEG----WNSIEKQK--DELLVCFK-KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 95 Eid~PGH~~a~----~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
.+ +|.|+..- +....... |-.-.-.. ..+|+ +..+|-.++++.+|+-+.+.-.++-|.
T Consensus 485 Dv-V~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG-------~~~fNy~~~eVr~fLlsna~yWl~Eyh 549 (897)
T PLN02960 485 DI-VHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWG-------TRMFKYGDHEVLHFLLSNLNWWVTEYR 549 (897)
T ss_pred Ee-cccccCCccccchhhcCCCccceeecCCCCccCCCC-------CcccCCCCHHHHHHHHHHHHHHHHHHC
Confidence 87 67887632 10000000 00000000 01222 234788899999999998888876554
No 31
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=87.22 E-value=7.6 Score=41.76 Aligned_cols=75 Identities=13% Similarity=0.232 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEe---eCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccC
Q psy13745 22 TLDNIKKTIDGMAVNKLNYFHWHIT---DSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDA 98 (406)
Q Consensus 22 ~~~~ik~~id~ma~~KlN~lh~Hl~---D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~ 98 (406)
.+.-|.+-||.++.+++|.+++=-. ....+.+.+..|=.+. ..+=|.+|+++||+-|.++||.||-.+ +
T Consensus 31 dl~gi~~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~id-------~~~Gt~~d~~~lv~~~h~~gi~vilD~-V 102 (551)
T PRK10933 31 DLRGVTQRLDYLQKLGVDAIWLTPFYVSPQVDNGYDVANYTAID-------PTYGTLDDFDELVAQAKSRGIRIILDM-V 102 (551)
T ss_pred CHHHHHHhhHHHHhCCCCEEEECCCCCCCCCCCCCCcccCCCcC-------cccCCHHHHHHHHHHHHHCCCEEEEEE-C
Confidence 3667778899999999999987321 1001111111111111 112289999999999999999999887 5
Q ss_pred Cccchh
Q psy13745 99 PAHVGE 104 (406)
Q Consensus 99 PGH~~a 104 (406)
+-|+..
T Consensus 103 ~NH~s~ 108 (551)
T PRK10933 103 FNHTST 108 (551)
T ss_pred CCCccC
Confidence 677764
No 32
>PRK14705 glycogen branching enzyme; Provisional
Probab=86.05 E-value=7 Score=45.82 Aligned_cols=119 Identities=16% Similarity=0.191 Sum_probs=72.7
Q ss_pred HHHHHHHHHhCCCcEEEEEEee----CCCcccccCcCCCccccCccCCCCCC-CHHHHHHHHHHHHhcCCeecccccCCc
Q psy13745 26 IKKTIDGMAVNKLNYFHWHITD----SQSFPFESRKYPTLTQSGAYSSEKIY-SREDIREIVHYGLVRGVHVIPELDAPA 100 (406)
Q Consensus 26 ik~~id~ma~~KlN~lh~Hl~D----~q~~r~e~~~~P~l~~~ga~~~~~~Y-T~~ei~~lv~yA~~rgI~viPEid~PG 100 (406)
++++||.+..+++|.+++--.- +.+|-++...| |.+...| |.+|+|.+|+.|.++||.||-.+ +|+
T Consensus 768 ~~~lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y--------~ap~~ryGt~~dfk~lVd~~H~~GI~VILD~-V~n 838 (1224)
T PRK14705 768 AKELVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSY--------FAPTSRFGHPDEFRFLVDSLHQAGIGVLLDW-VPA 838 (1224)
T ss_pred HHHHHHHHHHhCCCEEEECccccCCCCCCCCCCcccc--------CCcCcccCCHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence 4577899999999999885431 12333333222 1222223 89999999999999999999876 678
Q ss_pred cchhh-hc--ccccc-ccccccccC--CCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 101 HVGEG-WN--SIEKQ-KDELLVCFK--KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 101 H~~a~-~~--~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
|+..- |. ..... .|..-.+.. ...|+ ...+|-.++++.+|+.+.+.-.++-|.
T Consensus 839 H~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg-------~~~fn~~~~eVr~fli~~a~~Wl~eyh 897 (1224)
T PRK14705 839 HFPKDSWALAQFDGQPLYEHADPALGEHPDWG-------TLIFDFGRTEVRNFLVANALYWLDEFH 897 (1224)
T ss_pred cCCcchhhhhhcCCCcccccCCcccCCCCCCC-------CceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 87421 10 00000 011101100 01122 124678899999999998888887665
No 33
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=85.88 E-value=1.6 Score=41.46 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=51.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHH
Q psy13745 7 VQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGL 86 (406)
Q Consensus 7 ~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~ 86 (406)
+.+||+-.. +..-....+.++.|+..++|.+-+.+. |..-.+.-|... -..-..+.++++|+.|+
T Consensus 8 v~~~G~n~~----w~~~~~~~~~~~~~~~~G~n~VRi~v~----~~~~~~~~~~~~-------~~~~~~~~ld~~v~~a~ 72 (281)
T PF00150_consen 8 VNWRGFNTH----WYNPSITEADFDQLKALGFNTVRIPVG----WEAYQEPNPGYN-------YDETYLARLDRIVDAAQ 72 (281)
T ss_dssp EEEEEEEET----TSGGGSHHHHHHHHHHTTESEEEEEEE----STSTSTTSTTTS-------BTHHHHHHHHHHHHHHH
T ss_pred EEeeeeecc----cCCCCCHHHHHHHHHHCCCCEEEeCCC----HHHhcCCCCCcc-------ccHHHHHHHHHHHHHHH
Confidence 357787776 444347889999999999999999985 311111111110 01124578999999999
Q ss_pred hcCCeecccccC
Q psy13745 87 VRGVHVIPELDA 98 (406)
Q Consensus 87 ~rgI~viPEid~ 98 (406)
++||.||..+-.
T Consensus 73 ~~gi~vild~h~ 84 (281)
T PF00150_consen 73 AYGIYVILDLHN 84 (281)
T ss_dssp HTT-EEEEEEEE
T ss_pred hCCCeEEEEecc
Confidence 999999976533
No 34
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=85.72 E-value=9.3 Score=41.02 Aligned_cols=72 Identities=15% Similarity=0.266 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeC----CCcccccCcCCCccccCccCCCCCC-CHHHHHHHHHHHHhcCCeeccccc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDS----QSFPFESRKYPTLTQSGAYSSEKIY-SREDIREIVHYGLVRGVHVIPELD 97 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~----q~~r~e~~~~P~l~~~ga~~~~~~Y-T~~ei~~lv~yA~~rgI~viPEid 97 (406)
...|.+-||.+..+++|.+++--.-+ .+|.+....| +.++..| |.+|+|+||+-|.++||+||-.+
T Consensus 110 ~~gi~~~l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~~--------~~~~~~~G~~~e~k~lV~~aH~~Gi~VilD~- 180 (542)
T TIGR02402 110 FDAAIEKLPYLADLGITAIELMPVAQFPGTRGWGYDGVLP--------YAPHNAYGGPDDLKALVDAAHGLGLGVILDV- 180 (542)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccCCCCCCCCCCccCc--------cccccccCCHHHHHHHHHHHHHCCCEEEEEE-
Confidence 44566668999999999999864311 1232222221 1122223 89999999999999999999887
Q ss_pred CCccch
Q psy13745 98 APAHVG 103 (406)
Q Consensus 98 ~PGH~~ 103 (406)
++.|+.
T Consensus 181 V~NH~~ 186 (542)
T TIGR02402 181 VYNHFG 186 (542)
T ss_pred ccCCCC
Confidence 457875
No 35
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=85.72 E-value=2.6 Score=45.24 Aligned_cols=74 Identities=14% Similarity=0.224 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEee---CCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccC
Q psy13745 22 TLDNIKKTIDGMAVNKLNYFHWHITD---SQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDA 98 (406)
Q Consensus 22 ~~~~ik~~id~ma~~KlN~lh~Hl~D---~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~ 98 (406)
.+..|.+-+|.++.+++|.+++=-.- ..+..+.+..|=.+. ..+=|.+|+++||+-|.++||+||-.+ +
T Consensus 25 ~~~gi~~~l~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~id-------~~~Gt~~~~~~lv~~ah~~gi~vilD~-v 96 (543)
T TIGR02403 25 DLRGIIEKLDYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYAIN-------PLFGTMADFEELVSEAKKRNIKIMLDM-V 96 (543)
T ss_pred CHHHHHHhHHHHHHcCCCEEEECCcccCCCCCCCCCccccCccC-------cccCCHHHHHHHHHHHHHCCCEEEEEE-C
Confidence 57778888999999999999874210 000111111111110 112289999999999999999999887 5
Q ss_pred Cccch
Q psy13745 99 PAHVG 103 (406)
Q Consensus 99 PGH~~ 103 (406)
|-|+.
T Consensus 97 ~NH~~ 101 (543)
T TIGR02403 97 FNHTS 101 (543)
T ss_pred ccccc
Confidence 67775
No 36
>PRK05402 glycogen branching enzyme; Provisional
Probab=85.27 E-value=9.4 Score=42.47 Aligned_cols=126 Identities=16% Similarity=0.135 Sum_probs=73.5
Q ss_pred CCCHHHHH-HHHHHHHhCCCcEEEEEEee----CCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecc
Q psy13745 20 FYTLDNIK-KTIDGMAVNKLNYFHWHITD----SQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIP 94 (406)
Q Consensus 20 ~~~~~~ik-~~id~ma~~KlN~lh~Hl~D----~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viP 94 (406)
+.+...|. ++||.+..+++|.+++=-.- +..|.+....|=.+. ..+=|.+|+|+||+-|.++||.||-
T Consensus 261 ~g~~~~i~~~l~~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~ai~-------~~~Gt~~dfk~lV~~~H~~Gi~Vil 333 (726)
T PRK05402 261 FLSYRELADQLIPYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYAPT-------SRFGTPDDFRYFVDACHQAGIGVIL 333 (726)
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcccCCCcC-------cccCCHHHHHHHHHHHHHCCCEEEE
Confidence 34444444 56799999999999885331 112333332221111 2233899999999999999999998
Q ss_pred cccCCccchhh---hcccccc-ccccccccC--CCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 95 ELDAPAHVGEG---WNSIEKQ-KDELLVCFK--KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 95 Eid~PGH~~a~---~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
.+ ++.|+..- +...... .|..-.+.. ...|. ...+|-.++++.+++.+.+.-.++-|.
T Consensus 334 D~-V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~-------~~~~n~~~~~v~~~l~~~~~~W~~e~~ 397 (726)
T PRK05402 334 DW-VPAHFPKDAHGLARFDGTALYEHADPREGEHPDWG-------TLIFNYGRNEVRNFLVANALYWLEEFH 397 (726)
T ss_pred EE-CCCCCCCCccchhccCCCcceeccCCcCCccCCCC-------CccccCCCHHHHHHHHHHHHHHHHHhC
Confidence 87 47888531 1000000 000000000 00111 124688899999999998888876554
No 37
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=84.83 E-value=5.7 Score=39.53 Aligned_cols=141 Identities=15% Similarity=0.174 Sum_probs=75.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCC-ccccCccCCCCCCCHHHHHHHHH
Q psy13745 5 EVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPT-LTQSGAYSSEKIYSREDIREIVH 83 (406)
Q Consensus 5 P~~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~-l~~~ga~~~~~~YT~~ei~~lv~ 83 (406)
|++++-+.+ +|.+.+-+.|+++++.+..+++-.=.+||-|.+... + .++-. .-..=.|.+. .| -+.+++|+
T Consensus 7 P~wa~G~~~---~~~~~s~~~v~~~~~~~~~~~iP~d~i~lddw~~~~-~-~~~g~~~~~~f~~d~~-~F--Pdp~~mi~ 78 (317)
T cd06594 7 PDWAYGGAI---LGLQGGTDKVLEALEKARAAGVKVAGLWLQDWTGRR-E-TSFGDRLWWNWEWDPE-RY--PGLDELIE 78 (317)
T ss_pred chhhhCcEE---eeeeCCHHHHHHHHHHHHHcCCCeeEEEEccccCcc-c-ccccceeeeeeEEChh-hC--CCHHHHHH
Confidence 566666555 354459999999999999998876666664332110 0 00000 0000001111 12 35789999
Q ss_pred HHHhcCCeecccccCCccchhh---hccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHH
Q psy13745 84 YGLVRGVHVIPELDAPAHVGEG---WNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEM 155 (406)
Q Consensus 84 yA~~rgI~viPEid~PGH~~a~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~ 155 (406)
.-+++|++||+-|+ |+=.... .+.. ....-++...+..++........+..+|.+||++.+...+.++++
T Consensus 79 ~Lh~~G~~~~~~i~-P~v~~~~~~~y~~~-~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~ 151 (317)
T cd06594 79 ELKARGIRVLTYIN-PYLADDGPLYYEEA-KDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEM 151 (317)
T ss_pred HHHHCCCEEEEEec-CceecCCchhHHHH-HHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHH
Confidence 99999999999876 4422110 0000 000001111111222111111123568999999999998888776
No 38
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=84.55 E-value=9.4 Score=41.59 Aligned_cols=119 Identities=13% Similarity=0.154 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCcccc-----CccCCCCCC-CHHHHHHHHHHHHhcCCeecccc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQS-----GAYSSEKIY-SREDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~-----ga~~~~~~Y-T~~ei~~lv~yA~~rgI~viPEi 96 (406)
.+...++|+-++.+++|.+.+- .+..||.=..= |-|.+...| |.+|+|.+|..|.++||.||-..
T Consensus 164 ~e~a~~llpYl~elG~T~IELM---------Pv~e~p~~~sWGYq~~g~yAp~sryGtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 164 FELAIELLPYLKELGITHIELM---------PVAEHPGDRSWGYQGTGYYAPTSRYGTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHHHHHHhHHHHHhCCCEEEEc---------ccccCCCCCCCCCCcceeccccccCCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 5667789999999999988873 44455532211 223344445 99999999999999999999876
Q ss_pred cCCccchhhhccccccccccccccC--------CCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 97 DAPAHVGEGWNSIEKQKDELLVCFK--------KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 97 d~PGH~~a~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
+|||.... .. .+..++-..+.. ..+|.. ...|-+.+++..|+-+-.---++-|.
T Consensus 235 -V~~HF~~d-~~-~L~~fdg~~~~e~~~~~~~~~~~Wg~-------~i~~~gr~EVR~Fll~nal~Wl~~yH 296 (628)
T COG0296 235 -VPNHFPPD-GN-YLARFDGTFLYEHEDPRRGEHTDWGT-------AIFNYGRNEVRNFLLANALYWLEEYH 296 (628)
T ss_pred -cCCcCCCC-cc-hhhhcCCccccccCCcccccCCCccc-------chhccCcHHHHHHHHHHHHHHHHHhC
Confidence 78998641 10 011111111111 123432 23455589999988776555555554
No 39
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=83.79 E-value=11 Score=41.81 Aligned_cols=123 Identities=15% Similarity=0.068 Sum_probs=67.9
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccC-----------ccCCCCCC----CHHHHHHHHHHHHhcCCeec
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSG-----------AYSSEKIY----SREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~g-----------a~~~~~~Y----T~~ei~~lv~yA~~rgI~vi 93 (406)
.||-|..+++|.++|=-.= +....+.+...| -+.+++.| +.+|+|+||+-|.++||+||
T Consensus 189 ~LdyLk~LGvtaI~L~Pi~------~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g~~~efk~LV~~~H~~GI~VI 262 (688)
T TIGR02100 189 MIDYLKKLGVTAVELLPVH------AFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASGQVAEFKTMVRALHDAGIEVI 262 (688)
T ss_pred hhHHHHHcCCCEEEECCcc------cCCccccccccCCCCccCcCcccccccChhhcCCCCHHHHHHHHHHHHHCCCEEE
Confidence 4889999999999874321 011111111111 11234445 68999999999999999999
Q ss_pred ccccCCccchhhhcccccc--------ccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 94 PELDAPAHVGEGWNSIEKQ--------KDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 94 PEid~PGH~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
-.+ ++.|+...-...+.. .|-.+...+...+..+. .-...||..+|++.++|.+.+.-.+.-|.
T Consensus 263 lDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~--g~gn~ln~~~p~vr~~i~d~l~~W~~e~g 334 (688)
T TIGR02100 263 LDV-VYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDT--GTGNTLNLSHPRVLQMVMDSLRYWVTEMH 334 (688)
T ss_pred EEE-CcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCC--CccccccCCCHHHHHHHHHHHHHHHHHcC
Confidence 887 457876321000000 00000000000010010 00135788899999999998888776554
No 40
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=83.00 E-value=12 Score=36.80 Aligned_cols=125 Identities=13% Similarity=0.183 Sum_probs=70.5
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccC-CCCCCCHHHHHHHHHHHHhcCCeeccccc
Q psy13745 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYS-SEKIYSREDIREIVHYGLVRGVHVIPELD 97 (406)
Q Consensus 19 ~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~-~~~~YT~~ei~~lv~yA~~rgI~viPEid 97 (406)
.+.+-+.++++++.+...++.+=.+.+-+ +|- ..+- -|.|. ....+. +.+++++..+++|++++.-++
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~~~lD~--~w~---~~~~----~~~f~~d~~~FP--d~~~~i~~l~~~G~~~~~~~~ 87 (308)
T cd06593 19 FYYDEEEVNEFADGMRERNLPCDVIHLDC--FWM---KEFQ----WCDFEFDPDRFP--DPEGMLSRLKEKGFKVCLWIN 87 (308)
T ss_pred cCCCHHHHHHHHHHHHHcCCCeeEEEEec--ccc---cCCc----ceeeEECcccCC--CHHHHHHHHHHCCCeEEEEec
Confidence 35788999999999999998887766644 231 1110 01111 011222 478999999999999998776
Q ss_pred CCccchh---hhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHh
Q psy13745 98 APAHVGE---GWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTD 157 (406)
Q Consensus 98 ~PGH~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~ 157 (406)
|. ... ..+... ...-++.-.+..++...........+|.+||++.++..+.++++.+
T Consensus 88 -P~-i~~~~~~~~e~~-~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~ 147 (308)
T cd06593 88 -PY-IAQKSPLFKEAA-EKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLD 147 (308)
T ss_pred -CC-CCCCchhHHHHH-HCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHH
Confidence 42 110 010000 0000111111111111111122456899999999999999998765
No 41
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=82.19 E-value=15 Score=41.09 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=72.3
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeC----CCcccccCcCCCccccCccCCCCCC-CHHHHHHHHHHHHhcCCeecccccCCc
Q psy13745 26 IKKTIDGMAVNKLNYFHWHITDS----QSFPFESRKYPTLTQSGAYSSEKIY-SREDIREIVHYGLVRGVHVIPELDAPA 100 (406)
Q Consensus 26 ik~~id~ma~~KlN~lh~Hl~D~----q~~r~e~~~~P~l~~~ga~~~~~~Y-T~~ei~~lv~yA~~rgI~viPEid~PG 100 (406)
..+.|+.+..+++|.+++--.-. .+|-+....|= .++..| |.+|+|+||+-|.++||.||-.+ ++.
T Consensus 253 ~~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~f--------a~~~~~Gtp~dlk~LVd~aH~~GI~VilDv-V~n 323 (758)
T PLN02447 253 ADDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVTNFF--------AVSSRSGTPEDLKYLIDKAHSLGLRVLMDV-VHS 323 (758)
T ss_pred HHHHHHHHHHcCCCEEEECCccccCCCCCCCcCcccCc--------ccccccCCHHHHHHHHHHHHHCCCEEEEEe-ccc
Confidence 46789999999999998753311 12333322221 222223 78999999999999999999887 678
Q ss_pred cchhhh----cccccc--ccccccccCC-CcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 101 HVGEGW----NSIEKQ--KDELLVCFKK-EPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 101 H~~a~~----~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
|+..-- ...... .|-...+.+. ..|. ...+|-.++++.+||.+.+.-.++-|.
T Consensus 324 H~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~-------~~~~N~~~~eVr~fLl~~~~~Wl~ey~ 383 (758)
T PLN02447 324 HASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWD-------SRLFNYGNWEVLRFLLSNLRWWLEEYK 383 (758)
T ss_pred cccccccccccccCCCCccccccCCCCCcCcCC-------CceecCCCHHHHHHHHHHHHHHHHHhC
Confidence 876311 000000 0000001000 0111 124778899999999999888887554
No 42
>PRK12568 glycogen branching enzyme; Provisional
Probab=81.61 E-value=17 Score=40.48 Aligned_cols=125 Identities=14% Similarity=0.089 Sum_probs=74.2
Q ss_pred CCCHHHH-HHHHHHHHhCCCcEEEEEEeeC----CCcccccCcCCCccccCccCCCCC-CCHHHHHHHHHHHHhcCCeec
Q psy13745 20 FYTLDNI-KKTIDGMAVNKLNYFHWHITDS----QSFPFESRKYPTLTQSGAYSSEKI-YSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 20 ~~~~~~i-k~~id~ma~~KlN~lh~Hl~D~----q~~r~e~~~~P~l~~~ga~~~~~~-YT~~ei~~lv~yA~~rgI~vi 93 (406)
+.+...| .++|+-+..+++|.+++--.-. .+|.+... |-|.+... =|.+|+|++|+.|.++||.||
T Consensus 265 ~~~~~~la~~ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~--------~~~a~~~~~G~~~dfk~lV~~~H~~Gi~VI 336 (730)
T PRK12568 265 PLDWPTLAEQLIPYVQQLGFTHIELLPITEHPFGGSWGYQPL--------GLYAPTARHGSPDGFAQFVDACHRAGIGVI 336 (730)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEECccccCCCCCCCCCCCC--------cCCccCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 3443333 4678999999999998854311 12322221 12222222 389999999999999999999
Q ss_pred ccccCCccchhhh---cccc-cccccccccc--CCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 94 PELDAPAHVGEGW---NSIE-KQKDELLVCF--KKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 94 PEid~PGH~~a~~---~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
-++ +|.|+..-- .... ...|..-... ....|.. ..+|-.++++.+|+-+.+.-.++-|.
T Consensus 337 lD~-V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~-------~~~N~~~peVr~~li~~a~~Wl~eyh 401 (730)
T PRK12568 337 LDW-VSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNT-------LIYNYGRPEVTAYLLGSALEWIEHYH 401 (730)
T ss_pred EEe-ccccCCccccccccCCCccccccCCCcCCccCCCCC-------eecccCCHHHHHHHHHHHHHHHHHhC
Confidence 998 478876421 0000 0001000000 0011211 13688899999999988888877654
No 43
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=81.39 E-value=5.3 Score=42.74 Aligned_cols=74 Identities=14% Similarity=0.240 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeC---CCcccccCcCCCccccCccCCCCCC-CHHHHHHHHHHHHhcCCeeccccc
Q psy13745 22 TLDNIKKTIDGMAVNKLNYFHWHITDS---QSFPFESRKYPTLTQSGAYSSEKIY-SREDIREIVHYGLVRGVHVIPELD 97 (406)
Q Consensus 22 ~~~~ik~~id~ma~~KlN~lh~Hl~D~---q~~r~e~~~~P~l~~~ga~~~~~~Y-T~~ei~~lv~yA~~rgI~viPEid 97 (406)
.+..|.+-||.++.+++|.+++=-.=. .++.+....|=.+ +..| |.+|+++||+-|.++||.||-.+
T Consensus 26 dl~gi~~~Ldyl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~v--------d~~~Gt~~df~~Lv~~ah~~Gi~vilD~- 96 (539)
T TIGR02456 26 DFPGLTSKLDYLKWLGVDALWLLPFFQSPLRDDGYDVSDYRAI--------LPEFGTIDDFKDFVDEAHARGMRVIIDL- 96 (539)
T ss_pred CHHHHHHhHHHHHHCCCCEEEECCCcCCCCCCCCCCccccccc--------ChhhCCHHHHHHHHHHHHHCCCEEEEEe-
Confidence 367788889999999999998742210 0111111111111 1122 88999999999999999999877
Q ss_pred CCccchh
Q psy13745 98 APAHVGE 104 (406)
Q Consensus 98 ~PGH~~a 104 (406)
++.|+..
T Consensus 97 V~NH~s~ 103 (539)
T TIGR02456 97 VLNHTSD 103 (539)
T ss_pred ccCcCCC
Confidence 6778753
No 44
>PRK10785 maltodextrin glucosidase; Provisional
Probab=81.02 E-value=5.4 Score=43.33 Aligned_cols=79 Identities=14% Similarity=0.277 Sum_probs=53.4
Q ss_pred CCCCC--HHHHHHHHHHHHhCCCcEEEEEEe-eC-CCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 18 RNFYT--LDNIKKTIDGMAVNKLNYFHWHIT-DS-QSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 18 R~~~~--~~~ik~~id~ma~~KlN~lh~Hl~-D~-q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+.|+. ++-|.+-||-++.+++|.+++--. +. ..+++....|=++. ..+=|.+|+++||+-|.+|||+||
T Consensus 171 ~~f~GGDl~GI~~kLdYL~~LGv~~I~L~Pif~s~s~hgYd~~Dy~~iD-------p~~Gt~~df~~Lv~~aH~rGikVi 243 (598)
T PRK10785 171 STFYGGDLDGISEKLPYLKKLGVTALYLNPIFTAPSVHKYDTEDYRHVD-------PQLGGDAALLRLRHATQQRGMRLV 243 (598)
T ss_pred ccccCcCHHHHHHHHHHHHHcCCCEEEeCCcccCCCCCCcCcccccccC-------cccCCHHHHHHHHHHHHHCCCEEE
Confidence 45655 788999999999999999998532 10 01111211111111 112288999999999999999999
Q ss_pred ccccCCccchh
Q psy13745 94 PELDAPAHVGE 104 (406)
Q Consensus 94 PEid~PGH~~a 104 (406)
-.+ ++.|++.
T Consensus 244 lD~-V~NH~~~ 253 (598)
T PRK10785 244 LDG-VFNHTGD 253 (598)
T ss_pred EEE-CCCcCCC
Confidence 887 5678764
No 45
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=80.31 E-value=1.7 Score=41.70 Aligned_cols=75 Identities=20% Similarity=0.339 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEe-eC--CCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccCC
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHIT-DS--QSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAP 99 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~-D~--q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~P 99 (406)
..-|++-||.++.+++|.+++--. .. ..|.+....|=.+. ..+=|.+|+++||+-|.++||.||-.+ ++
T Consensus 3 ~~gi~~kLdyl~~lGv~~I~l~Pi~~~~~~~~gY~~~d~~~vd-------~~~Gt~~d~~~Lv~~~h~~gi~VilD~-V~ 74 (316)
T PF00128_consen 3 FRGIIDKLDYLKDLGVNAIWLSPIFESPNGYHGYDPSDYYAVD-------PRFGTMEDFKELVDAAHKRGIKVILDV-VP 74 (316)
T ss_dssp HHHHHHTHHHHHHHTESEEEESS-EESSSSTTTTSESEEEEES-------TTTBHHHHHHHHHHHHHHTTCEEEEEE-ET
T ss_pred HHHHHHhhHHHHHcCCCceecccccccccccccccceeeeccc-------cccchhhhhhhhhhccccccceEEEee-ec
Confidence 456778899999999999997421 10 11222221111110 112289999999999999999999766 34
Q ss_pred ccchhh
Q psy13745 100 AHVGEG 105 (406)
Q Consensus 100 GH~~a~ 105 (406)
.|+...
T Consensus 75 NH~~~~ 80 (316)
T PF00128_consen 75 NHTSDD 80 (316)
T ss_dssp SEEETT
T ss_pred cccccc
Confidence 587643
No 46
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=79.99 E-value=8 Score=40.01 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=76.4
Q ss_pred CCCCcceEEEeCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHH
Q psy13745 5 EVVQSARILLDTARNF-YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVH 83 (406)
Q Consensus 5 P~~~~RG~mlD~aR~~-~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~ 83 (406)
|++.+ |+++ +|.. .+.+.++++|+.|...++-.=.+++-++ |- ..+..++ |. ...+. +.+++++
T Consensus 26 P~wal-G~~~--~~~~~~~~~~v~~~i~~~~~~~iP~d~~~iD~~--~~---~~~~~f~----~d-~~~FP--d~~~~~~ 90 (441)
T PF01055_consen 26 PRWAL-GFWQ--SRWGYYNQDEVREVIDRYRSNGIPLDVIWIDDD--YQ---DGYGDFT----WD-PERFP--DPKQMID 90 (441)
T ss_dssp -GGGG-SEEE--EESTBTSHHHHHHHHHHHHHTT--EEEEEE-GG--GS---BTTBTT-----B--TTTTT--THHHHHH
T ss_pred chhhh-ceEe--ecCcCCCHHHHHHHHHHHHHcCCCccceecccc--cc---ccccccc----cc-ccccc--chHHHHH
Confidence 67777 8888 4554 5789999999999999998777776544 21 1111111 11 11222 7899999
Q ss_pred HHHhcCCeecccccCCccchh----hhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhc
Q psy13745 84 YGLVRGVHVIPELDAPAHVGE----GWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLF 159 (406)
Q Consensus 84 yA~~rgI~viPEid~PGH~~a----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f 159 (406)
..+++||++++-++--=+... ...... ...-++.-.+..++...........+|.+++++.++..+.++++.+.+
T Consensus 91 ~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~-~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~ 169 (441)
T PF01055_consen 91 ELHDQGIKVVLWVHPFVSNDSPDYENYDEAK-EKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDY 169 (441)
T ss_dssp HHHHTT-EEEEEEESEEETTTTB-HHHHHHH-HTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTS
T ss_pred hHhhCCcEEEEEeecccCCCCCcchhhhhHh-hcCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhcc
Confidence 999999999877654211111 010000 000011111111211111000135689999999999999999988874
Q ss_pred c
Q psy13745 160 R 160 (406)
Q Consensus 160 ~ 160 (406)
+
T Consensus 170 G 170 (441)
T PF01055_consen 170 G 170 (441)
T ss_dssp T
T ss_pred C
Confidence 4
No 47
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=79.71 E-value=6.1 Score=44.62 Aligned_cols=76 Identities=12% Similarity=0.214 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEe----eCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccc
Q psy13745 21 YTLDNIKKTIDGMAVNKLNYFHWHIT----DSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 21 ~~~~~ik~~id~ma~~KlN~lh~Hl~----D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEi 96 (406)
++.+.+.+.|+.++.+++|.+.+--. ....+.+.+..|-.+.. .+=|.++++++++-|+++||.||-.|
T Consensus 17 ~tf~~~~~~l~YL~~LGis~IyLsPi~~a~~gs~hGYdv~D~~~idp-------~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 17 FTFDDAAELVPYFADLGVSHLYLSPILAARPGSTHGYDVVDHTRINP-------ELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred CCHHHHHHHhHHHHHcCCCEEEECcCccCCCCCCCCCCcCCCCCcCC-------CCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 78899999999999999999987532 11122233333322221 11288999999999999999999888
Q ss_pred cCCccchh
Q psy13745 97 DAPAHVGE 104 (406)
Q Consensus 97 d~PGH~~a 104 (406)
+|-|+..
T Consensus 90 -V~NH~~~ 96 (879)
T PRK14511 90 -VPNHMAV 96 (879)
T ss_pred -ccccccC
Confidence 6778764
No 48
>PLN02784 alpha-amylase
Probab=78.22 E-value=9.4 Score=42.97 Aligned_cols=86 Identities=6% Similarity=0.057 Sum_probs=55.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeC--CCcccccCcCCCccccCccCCCC-CCCHHHHHHHHHHHH
Q psy13745 10 ARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDS--QSFPFESRKYPTLTQSGAYSSEK-IYSREDIREIVHYGL 86 (406)
Q Consensus 10 RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~--q~~r~e~~~~P~l~~~ga~~~~~-~YT~~ei~~lv~yA~ 86 (406)
.|+..|+-..--=-..|++-+|.++.+++|.+++--.=. ..+.+....| |..+. +=|++|+++||+-|.
T Consensus 507 QgF~Wds~~dg~w~~~I~ekldyL~~LG~taIWLpP~~~s~s~~GY~p~D~--------y~lds~yGT~~ELk~LI~a~H 578 (894)
T PLN02784 507 QGFNWESHKSGRWYMELGEKAAELSSLGFTVVWLPPPTESVSPEGYMPKDL--------YNLNSRYGTIDELKDLVKSFH 578 (894)
T ss_pred EeEEcCcCCCCchHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCCcCcccc--------cccCcCcCCHHHHHHHHHHHH
Confidence 455556544311156788999999999999998854200 0000111111 11122 239999999999999
Q ss_pred hcCCeecccccCCccchh
Q psy13745 87 VRGVHVIPELDAPAHVGE 104 (406)
Q Consensus 87 ~rgI~viPEid~PGH~~a 104 (406)
++||.||-.| ++.|+.+
T Consensus 579 ~~GIkVIlDi-ViNH~ag 595 (894)
T PLN02784 579 EVGIKVLGDA-VLNHRCA 595 (894)
T ss_pred HCCCEEEEEE-Ccccccc
Confidence 9999999887 6778764
No 49
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=76.99 E-value=20 Score=38.98 Aligned_cols=132 Identities=8% Similarity=0.035 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEeeC------------CCcccccCcCCCccccCccCCC---CCCCHHHHHHHHHHHHhc
Q psy13745 24 DNIKKTIDGMAVNKLNYFHWHITDS------------QSFPFESRKYPTLTQSGAYSSE---KIYSREDIREIVHYGLVR 88 (406)
Q Consensus 24 ~~ik~~id~ma~~KlN~lh~Hl~D~------------q~~r~e~~~~P~l~~~ga~~~~---~~YT~~ei~~lv~yA~~r 88 (406)
..|...||-|..+++|.++|=-.=+ -+|.+....|=.. .+.|+.+ +.-+.+|+|+||+-|.++
T Consensus 164 ~g~~~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~--~~~y~~~p~~~~~~~~efk~lV~~~H~~ 241 (605)
T TIGR02104 164 NGVSTGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPLNYNVP--EGSYSTNPYDPATRIRELKQMIQALHEN 241 (605)
T ss_pred ccchhHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCccCCCc--ChhhhcCCCccchHHHHHHHHHHHHHHC
Confidence 3455779999999999999843211 1132222221000 0111110 111258999999999999
Q ss_pred CCeecccccCCccchhhhccccccc-cccccccCCCcCccccccCC-CCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 89 GVHVIPELDAPAHVGEGWNSIEKQK-DELLVCFKKEPWTKFCVEPP-CGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 89 gI~viPEid~PGH~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
||+||-.+ ++.|+...-. .+... .+..-+. ..+...+..... ...++-.+|++.+++.+.+.-.+.-|.
T Consensus 242 Gi~VilDv-V~NH~~~~~~-~~f~~~~~~~~~~-~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~ 312 (605)
T TIGR02104 242 GIRVIMDV-VYNHTYSREE-SPFEKTVPGYYYR-YNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYN 312 (605)
T ss_pred CCEEEEEE-EcCCccCCCC-CcccCCCCCeeEE-ECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcC
Confidence 99999887 5678752100 00000 0000000 000000000000 123566688999999888877776554
No 50
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=76.74 E-value=9.4 Score=42.89 Aligned_cols=77 Identities=12% Similarity=0.226 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEe----eCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeeccc
Q psy13745 20 FYTLDNIKKTIDGMAVNKLNYFHWHIT----DSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPE 95 (406)
Q Consensus 20 ~~~~~~ik~~id~ma~~KlN~lh~Hl~----D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPE 95 (406)
=++.+.+++.|+.++.+++|.+++=-. +...+.+.+..|-.+.. .+=|.+++++|++-|+++||.||-.
T Consensus 12 ~~tf~~~~~~L~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~idp-------~lGt~edf~~Lv~aah~~Gm~vIlD 84 (825)
T TIGR02401 12 GFTFDDAAALLPYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSEINP-------ELGGEEGLRRLSEAARARGLGLIVD 84 (825)
T ss_pred CCCHHHHHHhhHHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCCcCC-------CCCCHHHHHHHHHHHHHCCCEEEEE
Confidence 467889999999999999999886321 11122223322222211 1228999999999999999999988
Q ss_pred ccCCccchh
Q psy13745 96 LDAPAHVGE 104 (406)
Q Consensus 96 id~PGH~~a 104 (406)
| +|-|+..
T Consensus 85 i-VpNH~a~ 92 (825)
T TIGR02401 85 I-VPNHMAV 92 (825)
T ss_pred e-ccccccc
Confidence 7 5888874
No 51
>PRK03705 glycogen debranching enzyme; Provisional
Probab=76.51 E-value=16 Score=40.16 Aligned_cols=120 Identities=15% Similarity=0.113 Sum_probs=68.1
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccC-----------ccCCCCCCC------HHHHHHHHHHHHhcCCe
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSG-----------AYSSEKIYS------REDIREIVHYGLVRGVH 91 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~g-----------a~~~~~~YT------~~ei~~lv~yA~~rgI~ 91 (406)
.||-|..+++|.++|=-.-+ ..+.+.+...| -+.+.+.|. .+|+|+||+-|.++||+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~------~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~~~~~efk~LV~~~H~~GI~ 257 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQ------FASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPETALDEFRDAVKALHKAGIE 257 (658)
T ss_pred chHHHHHcCCCEEEecCccc------CCCcccccccccccccCcccccccccccccCCCCcchHHHHHHHHHHHHHCCCE
Confidence 48899999999999843211 11111111111 012344453 37999999999999999
Q ss_pred ecccccCCccchhhhccccc--------ccccccccc-CCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 92 VIPELDAPAHVGEGWNSIEK--------QKDELLVCF-KKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 92 viPEid~PGH~~a~~~~~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
||-.+ ++.|+...-...+. ..|-.+.-. ....|.. | ...||..++++.+++.+.++-.++-|.
T Consensus 258 VIlDv-V~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g-~----g~~ln~~~p~Vr~~iid~l~~W~~e~g 329 (658)
T PRK03705 258 VILDV-VFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTG-C----GNTLNLSHPAVVDWAIDCLRYWVETCH 329 (658)
T ss_pred EEEEE-cccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCC-c----cCcccCCCHHHHHHHHHHHHHHHHHhC
Confidence 99887 56787631100000 000000000 0001111 0 135788899999999999988887654
No 52
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=76.35 E-value=11 Score=39.61 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEe-eCCC----cccccCcCCCccc---cCccCCC-CCCCHHHHHHHHHHHHhcCCeec
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHIT-DSQS----FPFESRKYPTLTQ---SGAYSSE-KIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~-D~q~----~r~e~~~~P~l~~---~ga~~~~-~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
-..|.+-||.++.+++|.+.+=-. .+.+ +.+....|=.|.+ .| +.+ .+=|.+|+++||+-|.+|||.||
T Consensus 21 ~~~I~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~~~~~~~~~~--~id~~fGt~~dl~~Li~~~H~~Gi~vi 98 (479)
T PRK09441 21 WNRLAERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLFDLGEFDQKG--TVRTKYGTKEELLNAIDALHENGIKVY 98 (479)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeecccccccccccC--CcCcCcCCHHHHHHHHHHHHHCCCEEE
Confidence 356778889999999999987421 1110 1122111111100 00 001 12299999999999999999999
Q ss_pred ccccCCccchh
Q psy13745 94 PELDAPAHVGE 104 (406)
Q Consensus 94 PEid~PGH~~a 104 (406)
-.+ ++-|+..
T Consensus 99 ~D~-V~NH~~~ 108 (479)
T PRK09441 99 ADV-VLNHKAG 108 (479)
T ss_pred EEE-CcccccC
Confidence 887 6788863
No 53
>PLN02361 alpha-amylase
Probab=75.43 E-value=8.8 Score=39.64 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEEEe-eCCCcccccCcCCCccccCccCCCC-CCCHHHHHHHHHHHHhcCCeecccccCCcc
Q psy13745 24 DNIKKTIDGMAVNKLNYFHWHIT-DSQSFPFESRKYPTLTQSGAYSSEK-IYSREDIREIVHYGLVRGVHVIPELDAPAH 101 (406)
Q Consensus 24 ~~ik~~id~ma~~KlN~lh~Hl~-D~q~~r~e~~~~P~l~~~ga~~~~~-~YT~~ei~~lv~yA~~rgI~viPEid~PGH 101 (406)
..|++-||.|+.++++.+.+=-. ++.+. .+|.-. .-|+.+. +=|++|+++||+-|.++||.||-.+ ++-|
T Consensus 29 ~~i~~kl~~l~~lG~t~iwl~P~~~~~~~----~GY~~~---d~y~~~~~~Gt~~el~~li~~~h~~gi~vi~D~-V~NH 100 (401)
T PLN02361 29 RNLEGKVPDLAKSGFTSAWLPPPSQSLAP----EGYLPQ---NLYSLNSAYGSEHLLKSLLRKMKQYNVRAMADI-VINH 100 (401)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCCCcCCCC----CCCCcc---cccccCcccCCHHHHHHHHHHHHHcCCEEEEEE-cccc
Confidence 67888899999999999987431 11000 001000 0011122 2389999999999999999999887 4577
Q ss_pred ch
Q psy13745 102 VG 103 (406)
Q Consensus 102 ~~ 103 (406)
+.
T Consensus 101 ~~ 102 (401)
T PLN02361 101 RV 102 (401)
T ss_pred cc
Confidence 64
No 54
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=74.88 E-value=31 Score=40.82 Aligned_cols=122 Identities=13% Similarity=0.079 Sum_probs=67.6
Q ss_pred HHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccC---c--c------CCCCCC---CHHHHHHHHHHHHhcCCeec
Q psy13745 28 KTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSG---A--Y------SSEKIY---SREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 28 ~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~g---a--~------~~~~~Y---T~~ei~~lv~yA~~rgI~vi 93 (406)
..|+.+..+++|.+++=-.- +......+...| . | .++..| |.+|+|++|+-|.++||+||
T Consensus 191 ~~i~yLk~LGvt~I~L~Pi~------~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~~~efk~lV~~~H~~GI~VI 264 (1221)
T PRK14510 191 EAISYLKKLGVSIVELNPIF------ASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGGEEEFAQAIKEAQSAGIAVI 264 (1221)
T ss_pred hhHHHHHHcCCCEEEeCCcc------ccCcccccccccCcCcCCCCCCCCCCcChhhccCcHHHHHHHHHHHHHCCCEEE
Confidence 45778889999999874321 111111111111 1 2 234445 79999999999999999999
Q ss_pred ccccCCccchhhhcccc--------ccccccccccCCCcCccccccCCC-CCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 94 PELDAPAHVGEGWNSIE--------KQKDELLVCFKKEPWTKFCVEPPC-GQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 94 PEid~PGH~~a~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
-.+ ++.|+...-...+ ...|-.....+...|..+ ..+ +.+|..++.+.+++.+.++-.++ +.
T Consensus 265 LDv-V~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~---~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~g 335 (1221)
T PRK14510 265 LDV-VFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENW---WGCGNLPNLERPFILRLPMDVLRSWAK-RG 335 (1221)
T ss_pred EEE-ccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCC---CCCCCccccCCHHHHHHHHHHHHHHHH-hC
Confidence 887 5678763211000 000000000000001110 011 24566789999999999888887 64
No 55
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=74.12 E-value=26 Score=36.05 Aligned_cols=126 Identities=16% Similarity=0.164 Sum_probs=70.1
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCC-CCCCHHHHHHHHHHHHhcCCe----eccc
Q psy13745 21 YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSE-KIYSREDIREIVHYGLVRGVH----VIPE 95 (406)
Q Consensus 21 ~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~-~~YT~~ei~~lv~yA~~rgI~----viPE 95 (406)
++.+.|++++|.++.+++++|.+ | .||--. .-...+..|-|.++ ..+. .=++.|+++.+++|+. +-||
T Consensus 55 ~~e~~i~~~a~~~~~~G~e~fvi---D-DGW~~~--r~~d~~~~GdW~~~~~kFP-~Gl~~l~~~i~~~Gmk~GlW~ePe 127 (394)
T PF02065_consen 55 ITEEKILELADAAAELGYEYFVI---D-DGWFGG--RDDDNAGLGDWEPDPKKFP-NGLKPLADYIHSLGMKFGLWFEPE 127 (394)
T ss_dssp --HHHHHHHHHHHHHHT-SEEEE-----SSSBCT--ESTTTSTTSBECBBTTTST-THHHHHHHHHHHTT-EEEEEEETT
T ss_pred CCHHHHHHHHHHHHHhCCEEEEE---c-Cccccc--cCCCcccCCceeEChhhhC-CcHHHHHHHHHHCCCeEEEEeccc
Confidence 56889999999999999998876 4 488322 11223344656433 2232 3499999999998875 4566
Q ss_pred ccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhccCC
Q psy13745 96 LDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTD 162 (406)
Q Consensus 96 id~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~~~ 162 (406)
+=.|+.-. .+..|. -.+...+..+. .....-.||.++|++.+++.+.+..+..-..=+
T Consensus 128 ~v~~~S~l--~~~hPd---w~l~~~~~~~~----~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gid 185 (394)
T PF02065_consen 128 MVSPDSDL--YREHPD---WVLRDPGRPPT----LGRNQYVLDLSNPEVRDYLFEVIDRLLREWGID 185 (394)
T ss_dssp EEESSSCH--CCSSBG---GBTCCTTSE-E----CBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-S
T ss_pred cccchhHH--HHhCcc---ceeecCCCCCc----CcccceEEcCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 54443221 111110 01111110000 001112599999999999999998887655434
No 56
>PRK10658 putative alpha-glucosidase; Provisional
Probab=73.71 E-value=23 Score=39.10 Aligned_cols=137 Identities=13% Similarity=0.163 Sum_probs=76.7
Q ss_pred CCCCcceEEEeCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcC--CCccccCccCCCCCCCHHHHHHH
Q psy13745 5 EVVQSARILLDTARNF-YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKY--PTLTQSGAYSSEKIYSREDIREI 81 (406)
Q Consensus 5 P~~~~RG~mlD~aR~~-~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~--P~l~~~ga~~~~~~YT~~ei~~l 81 (406)
|++++ |+.+-.+... ++-+.+.++++.|...++-.=-+|+-. .|- +.+ ..++ |.+ ..+. +.+++
T Consensus 264 P~Wal-G~w~s~~~~~~~~e~~v~~~~~~~r~~~iP~d~i~lD~--~w~---~~~~~~~f~----wd~-~~FP--dp~~m 330 (665)
T PRK10658 264 PAWSF-GLWLTTSFTTNYDEATVNSFIDGMAERDLPLHVFHFDC--FWM---KEFQWCDFE----WDP-RTFP--DPEGM 330 (665)
T ss_pred chhhh-heeeecccccCCCHHHHHHHHHHHHHcCCCceEEEEch--hhh---cCCceeeeE----ECh-hhCC--CHHHH
Confidence 56666 7777554332 567889999999999999765555532 231 110 0110 111 1122 45688
Q ss_pred HHHHHhcCCeecccccCC---ccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHh
Q psy13745 82 VHYGLVRGVHVIPELDAP---AHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTD 157 (406)
Q Consensus 82 v~yA~~rgI~viPEid~P---GH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~ 157 (406)
++.-+++||+|+.-|+-- .+. .++... ...-++.-.+..+|...........+|.+||++.+...+.++++.+
T Consensus 331 i~~L~~~G~k~~~~i~P~i~~~s~--~f~e~~-~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d 406 (665)
T PRK10658 331 LKRLKAKGLKICVWINPYIAQKSP--LFKEGK-EKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLD 406 (665)
T ss_pred HHHHHHCCCEEEEeccCCcCCCch--HHHHHH-HCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHh
Confidence 999999999999776521 111 111000 0011111122233321111223457899999999999999988765
No 57
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=73.62 E-value=23 Score=34.91 Aligned_cols=122 Identities=11% Similarity=0.040 Sum_probs=69.2
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCC-CCCCCHHHHHHHHHHHHhcCCeecccccC
Q psy13745 20 FYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSS-EKIYSREDIREIVHYGLVRGVHVIPELDA 98 (406)
Q Consensus 20 ~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~-~~~YT~~ei~~lv~yA~~rgI~viPEid~ 98 (406)
.++-+.|+++++.|..+++..=.+++-| +|- . ..|.|.- ...+. +.+++++.-+++|+++++-|+
T Consensus 26 ~~s~~~v~~~~~~~~~~~iP~d~i~iD~--~w~---~------~~g~f~~d~~~FP--dp~~mi~~l~~~G~k~~l~i~- 91 (303)
T cd06592 26 DINQETVLNYAQEIIDNGFPNGQIEIDD--NWE---T------CYGDFDFDPTKFP--DPKGMIDQLHDLGFRVTLWVH- 91 (303)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCeEEeCC--Ccc---c------cCCccccChhhCC--CHHHHHHHHHHCCCeEEEEEC-
Confidence 4678999999999999998755555533 331 1 1122221 12333 488999999999999998776
Q ss_pred Cccch--hhhccccccccccccccCC-CcCccccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy13745 99 PAHVG--EGWNSIEKQKDELLVCFKK-EPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMT 156 (406)
Q Consensus 99 PGH~~--a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~ 156 (406)
|.-.. ...+... ...-.+.-.+. .++........+..+|.+||++.++..+.++++.
T Consensus 92 P~i~~~s~~~~e~~-~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (303)
T cd06592 92 PFINTDSENFREAV-EKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQ 151 (303)
T ss_pred CeeCCCCHHHHhhh-hCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHH
Confidence 32111 0111000 00001111111 1111000011245689999999999999998887
No 58
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=72.82 E-value=51 Score=38.60 Aligned_cols=125 Identities=14% Similarity=0.195 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCC----------------------cccccCcCCCccccCccCCCCCC-------
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQS----------------------FPFESRKYPTLTQSGAYSSEKIY------- 73 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~----------------------~r~e~~~~P~l~~~ga~~~~~~Y------- 73 (406)
...|.+-||.|..+++|.+||--.=+-+ |-+....| +.+.+.|
T Consensus 479 f~gl~ekLdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~y--------fape~~Ygtdp~dp 550 (1111)
T TIGR02102 479 FAAFVEKLDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNY--------FALSGMYSEDPKDP 550 (1111)
T ss_pred HHHHHHhHHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcC--------cccccccccCCcCc
Confidence 4455566899999999999986431111 11111111 1123333
Q ss_pred --CHHHHHHHHHHHHhcCCeecccccCCccchhhhccccc-cccccccccCCCcCccccccCCCCCCCCCChhHHHHHHH
Q psy13745 74 --SREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEK-QKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGG 150 (406)
Q Consensus 74 --T~~ei~~lv~yA~~rgI~viPEid~PGH~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~ 150 (406)
+.+|+|+||+-|.++||+||-.+ ++.|+...-..... ..|-.....+..+...+| ++.++..++.+.+|+.+
T Consensus 551 ~~ri~EfK~LV~alH~~GI~VILDV-VyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~----g~~l~~e~~~vrk~iiD 625 (1111)
T TIGR02102 551 ELRIAEFKNLINEIHKRGMGVILDV-VYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFG----GGRLGTTHEMSRRILVD 625 (1111)
T ss_pred cccHHHHHHHHHHHHHCCCEEEEec-ccccccccccccccCCCceEeeCCCCCcccccC----CCCCCcCCHHHHHHHHH
Confidence 24899999999999999999877 56887642100000 000000000111111111 23466677888888887
Q ss_pred HHHHHHhhcc
Q psy13745 151 LYEEMTDLFR 160 (406)
Q Consensus 151 l~~e~~~~f~ 160 (406)
.+.-.++-|.
T Consensus 626 sl~yWv~ey~ 635 (1111)
T TIGR02102 626 SIKYLVDEFK 635 (1111)
T ss_pred HHHHHHHhcC
Confidence 7777766443
No 59
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=71.40 E-value=31 Score=37.26 Aligned_cols=161 Identities=12% Similarity=0.073 Sum_probs=80.2
Q ss_pred cccCCCCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccc-cCccC--CCCCCCHHHH
Q psy13745 2 SDIEVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQ-SGAYS--SEKIYSREDI 78 (406)
Q Consensus 2 ~D~P~~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~-~ga~~--~~~~YT~~ei 78 (406)
+|+=+||--|++=|-.-. .+.+..++.|+.|+.+++|-++.+ |.-||=..+--+.-.. ...|. .+..-+.+-|
T Consensus 97 sdW~~fPRYGfls~f~~~-~~~~~~~~~i~~L~~yHIN~~QFY---DW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~V 172 (559)
T PF13199_consen 97 SDWTRFPRYGFLSDFDKS-KSAEDIEAEIDQLNRYHINGLQFY---DWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTV 172 (559)
T ss_dssp SSTTSS--EEEE---GGG-GGHHHHHHHHHHHHHTT--EEEET---S--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHH
T ss_pred CCcccCCcceEecCCCCc-CCchhHHHHHHHHHhhCcCeEEEE---eeccccCCcCCCCCCchhhhhhhhcCCEehHHHH
Confidence 466677777887663222 345789999999999999999975 3334433221111100 01221 1345688999
Q ss_pred HHHHHHHHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccC--C--CCCCCCCChhHHHHHHHHHHH
Q psy13745 79 REIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEP--P--CGQLNPVSDRVYEVLGGLYEE 154 (406)
Q Consensus 79 ~~lv~yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~l~~~~~~t~~f~~~l~~e 154 (406)
|+.|+-|+++|+..++=.-+-|=....-..+-...--+........+..+.... + .-.+||+|++=...|-+=+.+
T Consensus 173 k~yI~~ah~~Gmkam~Ynmiyaa~~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~WQ~yI~~q~~~ 252 (559)
T PF13199_consen 173 KDYINAAHKYGMKAMAYNMIYAANNNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEWQNYIINQMNK 252 (559)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEEETT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCcceehhHhhhccccCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHHHHHHHHHHHH
Confidence 999999999999988865555433321110000000000000000000000000 0 134799999988899888899
Q ss_pred HHhhccCCCCceEEe
Q psy13745 155 MTDLFRTDLSGLFHM 169 (406)
Q Consensus 155 ~~~~f~~~~~~~iHi 169 (406)
+.+.|.-+ =|||
T Consensus 253 ~~~~~gFD---G~hl 264 (559)
T PF13199_consen 253 AIQNFGFD---GWHL 264 (559)
T ss_dssp HHHHHT-----EEEE
T ss_pred HHHccCCc---eEee
Confidence 99988877 6886
No 60
>PLN00196 alpha-amylase; Provisional
Probab=69.96 E-value=16 Score=38.14 Aligned_cols=71 Identities=15% Similarity=0.264 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEe----eCCCcccccCcCCCccccCccCCC--CCCCHHHHHHHHHHHHhcCCeecccc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHIT----DSQSFPFESRKYPTLTQSGAYSSE--KIYSREDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~----D~q~~r~e~~~~P~l~~~ga~~~~--~~YT~~ei~~lv~yA~~rgI~viPEi 96 (406)
...|++-|+.|+.++++.+.+=-. .++|+- ... + |.-+ .+=|++|+++||+-|.++||.||-.+
T Consensus 43 ~~~i~~kldyL~~LGvtaIWL~P~~~s~s~hGY~--~~D---~-----y~ld~~~fGt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 43 YNFLMGKVDDIAAAGITHVWLPPPSHSVSEQGYM--PGR---L-----YDLDASKYGNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCC--ccc---c-----CCCCcccCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456888899999999999987421 111210 000 0 1111 23399999999999999999999887
Q ss_pred cCCccchh
Q psy13745 97 DAPAHVGE 104 (406)
Q Consensus 97 d~PGH~~a 104 (406)
++-|+.+
T Consensus 113 -V~NH~~~ 119 (428)
T PLN00196 113 -VINHRTA 119 (428)
T ss_pred -CccCccc
Confidence 6778764
No 61
>KOG0259|consensus
Probab=69.73 E-value=4.5 Score=41.19 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhCCCcEEEEE---------------------EeeCCCcccccCcCCCccccCcc--------C-CCCCC
Q psy13745 24 DNIKKTIDGMAVNKLNYFHWH---------------------ITDSQSFPFESRKYPTLTQSGAY--------S-SEKIY 73 (406)
Q Consensus 24 ~~ik~~id~ma~~KlN~lh~H---------------------l~D~q~~r~e~~~~P~l~~~ga~--------~-~~~~Y 73 (406)
+.|.-.|+.+|.-+-|.|--| |--.++|+|+++..-.|...... . .+.+|
T Consensus 137 qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPcGnVy 216 (447)
T KOG0259|consen 137 QAIELAISSLANPGANILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPCGNVY 216 (447)
T ss_pred HHHHHHHHHhcCCCCceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCCcccc
Confidence 556777888888888877544 22234555555544433332211 1 25799
Q ss_pred CHHHHHHHHHHHHhcCCeecccccCCccch
Q psy13745 74 SREDIREIVHYGLVRGVHVIPELDAPAHVG 103 (406)
Q Consensus 74 T~~ei~~lv~yA~~rgI~viPEid~PGH~~ 103 (406)
|++-+++|.+.|+++||.||-. ++-||+-
T Consensus 217 s~~HL~kiae~A~klgi~vIaD-EVY~~~v 245 (447)
T KOG0259|consen 217 SEDHLKKIAETAKKLGIMVIAD-EVYGHTV 245 (447)
T ss_pred cHHHHHHHHHHHHHhCCeEEeh-hhcceee
Confidence 9999999999999999999864 5677765
No 62
>PLN03244 alpha-amylase; Provisional
Probab=67.34 E-value=19 Score=40.39 Aligned_cols=80 Identities=9% Similarity=-0.001 Sum_probs=51.9
Q ss_pred CCHHHHHHHHHHHHhcCCeecccccCCccchhhh----ccccccc--cccccccC-CCcCccccccCCCCCCCCCChhHH
Q psy13745 73 YSREDIREIVHYGLVRGVHVIPELDAPAHVGEGW----NSIEKQK--DELLVCFK-KEPWTKFCVEPPCGQLNPVSDRVY 145 (406)
Q Consensus 73 YT~~ei~~lv~yA~~rgI~viPEid~PGH~~a~~----~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~t~ 145 (406)
=|.+|+|.||.-|.++||.||-.+ ++.|+..-- ....... |-.-...+ ...|+ +..+|-.++++.
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDv-V~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WG-------s~~fnyg~~EVr 509 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDI-VHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWG-------TRMFKYGDLDVL 509 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe-cCccCCCccccchhhcCCCccceeccCCCCccCCCC-------CceecCCCHHHH
Confidence 389999999999999999999887 478886420 0000000 00000000 01121 245788899999
Q ss_pred HHHHHHHHHHHhhcc
Q psy13745 146 EVLGGLYEEMTDLFR 160 (406)
Q Consensus 146 ~f~~~l~~e~~~~f~ 160 (406)
+||-+.+.-.++-|.
T Consensus 510 ~FLLsna~yWleEyh 524 (872)
T PLN03244 510 HFLISNLNWWITEYQ 524 (872)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999988887665
No 63
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=65.43 E-value=27 Score=34.63 Aligned_cols=141 Identities=10% Similarity=0.017 Sum_probs=72.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccC-CCCCCCHHHHHHHHH
Q psy13745 5 EVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYS-SEKIYSREDIREIVH 83 (406)
Q Consensus 5 P~~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~-~~~~YT~~ei~~lv~ 83 (406)
|++.+ |++.=. -.+.+-+.+.++|+.+...++-+=-+++-+ +|- .... +. ...|.+. ....|. +.+++++
T Consensus 7 P~wa~-G~~~s~-~~y~~~~~v~~~~~~~~~~~iP~d~i~lD~--~w~-~~~~-~~-~~~~~f~wd~~~FP--dp~~mi~ 77 (317)
T cd06598 7 PRWAL-GNWASR-FGYRNWQEVDDTIKTLREKDFPLDAAILDL--YWF-GKDI-DK-GHMGNLDWDRKAFP--DPAGMIA 77 (317)
T ss_pred chHHH-HHHHhc-CCCCCHHHHHHHHHHHHHhCCCceEEEEec--hhh-cCcc-cC-CceeeeEeccccCC--CHHHHHH
Confidence 44444 555322 234578999999999999998654444432 221 0000 00 0001110 112232 5678999
Q ss_pred HHHhcCCeecccccCCccch-hhhcccccccccccccc--CCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy13745 84 YGLVRGVHVIPELDAPAHVG-EGWNSIEKQKDELLVCF--KKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMT 156 (406)
Q Consensus 84 yA~~rgI~viPEid~PGH~~-a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~ 156 (406)
.-+++||+|++-|+--=... ...+.... ...+.+. +..++..-.-......+|-+||++.++..+.++++.
T Consensus 78 ~L~~~G~k~~~~v~P~v~~~~~~y~e~~~--~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~ 151 (317)
T cd06598 78 DLAKKGVKTIVITEPFVLKNSKNWGEAVK--AGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLI 151 (317)
T ss_pred HHHHcCCcEEEEEcCcccCCchhHHHHHh--CCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhh
Confidence 99999999999886221111 00100000 0011111 111111000011245789999999999999988863
No 64
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=64.83 E-value=4.8 Score=38.17 Aligned_cols=74 Identities=9% Similarity=-0.125 Sum_probs=46.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcC
Q psy13745 10 ARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRG 89 (406)
Q Consensus 10 RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rg 89 (406)
||++++..+.--..+.+++.|+.++.++...+..+. |..-......+. .....+.+++++++|+++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~i~~a~~lg~~~i~~~~----g~~~~~~~~~~~---------~~~~~~~l~~l~~~A~~~g 136 (254)
T TIGR03234 70 RGIACLPGREEEFREGVALAIAYARALGCPQVNCLA----GKRPAGVSPEEA---------RATLVENLRYAADALDRIG 136 (254)
T ss_pred CccccCCccHHHHHHHHHHHHHHHHHhCCCEEEECc----CCCCCCCCHHHH---------HHHHHHHHHHHHHHHHhcC
Confidence 444444443322267899999999999999887653 211000000000 0123467999999999999
Q ss_pred Ceecccc
Q psy13745 90 VHVIPEL 96 (406)
Q Consensus 90 I~viPEi 96 (406)
|.|.-|-
T Consensus 137 i~l~lE~ 143 (254)
T TIGR03234 137 LTLLIEP 143 (254)
T ss_pred CEEEEEE
Confidence 9999985
No 65
>KOG0470|consensus
Probab=62.81 E-value=8.2 Score=42.37 Aligned_cols=120 Identities=12% Similarity=0.123 Sum_probs=65.8
Q ss_pred HHHHHHHHHhCCCcEEEEEEeeCC-----CcccccCcCCCccccCccCCCCCC-CHH------HHHHHHHHHHhcCCeec
Q psy13745 26 IKKTIDGMAVNKLNYFHWHITDSQ-----SFPFESRKYPTLTQSGAYSSEKIY-SRE------DIREIVHYGLVRGVHVI 93 (406)
Q Consensus 26 ik~~id~ma~~KlN~lh~Hl~D~q-----~~r~e~~~~P~l~~~ga~~~~~~Y-T~~------ei~~lv~yA~~rgI~vi 93 (406)
.++.|..+..+++|.+||--+=.. .|.+..-.+ +.+...| |.+ |+|+||+-|..+||+|+
T Consensus 257 teKvlphlK~LG~NaiqLmpi~Ef~~~~~s~GY~~~nF--------FapssrYgt~~s~~ri~efK~lVd~aHs~GI~Vl 328 (757)
T KOG0470|consen 257 TEKVLPHLKKLGYNAIQLMPIFEFGHYYASWGYQVTNF--------FAPSSRYGTPESPCRINEFKELVDKAHSLGIEVL 328 (757)
T ss_pred hhhhhhHHHHhCccceEEeehhhhhhhhhccCcceeEe--------ecccccccCCCcccchHHHHHHHHHHhhCCcEEe
Confidence 455577788889999998654222 122111110 1123333 666 99999999999999999
Q ss_pred ccccCCccchhhhccccccccccccccCCCcCcc-----ccccCCCCCCCCCChhHHHHHHHHHHHHHhh
Q psy13745 94 PELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTK-----FCVEPPCGQLNPVSDRVYEVLGGLYEEMTDL 158 (406)
Q Consensus 94 PEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~ 158 (406)
-+| +-.|+.+-- ......+.-.+...|-. +...-....+|-.++.+.+||-+=+.-..+-
T Consensus 329 LDV-V~sHaa~n~----~d~l~~fdGid~~~Yf~~~~r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtE 393 (757)
T KOG0470|consen 329 LDV-VHSHAAKNS----KDGLNMFDGIDNSVYFHSGPRGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTE 393 (757)
T ss_pred hhh-hhhhcccCc----CCcchhccCcCCceEEEeCCcccccccccccccCCCHHHHHHHHHHHHHHHHh
Confidence 988 455655410 00011111111000100 0000012457778899999988766655543
No 66
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=61.66 E-value=13 Score=37.06 Aligned_cols=63 Identities=13% Similarity=0.281 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCH---HHHHHHHHHHHhcCCeecccc
Q psy13745 20 FYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSR---EDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 20 ~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~---~ei~~lv~yA~~rgI~viPEi 96 (406)
.++.+.=+.+|+.|+.+|||+.--= -|.-|.+.. .| +..|+. +++++|++.|++.||+.|=-|
T Consensus 11 PWs~e~R~~l~~f~~~~kmN~YiYA----------PKdDpyhr~--~W--re~Yp~~el~~l~~L~~~a~~~~V~Fv~ai 76 (306)
T PF07555_consen 11 PWSHEDRLDLIRFLGRYKMNTYIYA----------PKDDPYHRS--KW--REPYPEEELAELKELADAAKANGVDFVYAI 76 (306)
T ss_dssp ---HHHHHHHHHHHHHTT--EEEE------------TT-TTTTT--TT--TS---HHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCHHHHHHHHHHHHHcCCceEEEC----------CCCChHHHh--hh--cccCCHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 4567888999999999999987632 233333332 23 345655 457888999999999987555
No 67
>KOG0256|consensus
Probab=61.07 E-value=43 Score=34.68 Aligned_cols=66 Identities=17% Similarity=0.300 Sum_probs=46.6
Q ss_pred EEEeCCCCC-CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCC
Q psy13745 12 ILLDTARNF-YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGV 90 (406)
Q Consensus 12 ~mlD~aR~~-~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI 90 (406)
++++.+-+| ++++.+..-+...-..+++|=-+-+++ |+-|. +..||++++..|+.+|.+++|
T Consensus 198 v~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitN--------PsNPL---------G~~~~~e~L~~ll~Fa~~kni 260 (471)
T KOG0256|consen 198 VHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITN--------PSNPL---------GTTLSPEELISLLNFASRKNI 260 (471)
T ss_pred EEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeC--------CCCCC---------CCccCHHHHHHHHHHHhhcce
Confidence 456666666 666666666666666666666555543 23331 457999999999999999999
Q ss_pred eecc
Q psy13745 91 HVIP 94 (406)
Q Consensus 91 ~viP 94 (406)
.||-
T Consensus 261 HvI~ 264 (471)
T KOG0256|consen 261 HVIS 264 (471)
T ss_pred EEEe
Confidence 8874
No 68
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=59.97 E-value=26 Score=31.28 Aligned_cols=66 Identities=23% Similarity=0.232 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccCC
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAP 99 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~P 99 (406)
++.+++.|+.++.++...+.+|... |+ ..+..... ..--...+-+++|.++|+++||+|..|--..
T Consensus 70 ~~~~~~~i~~a~~lg~~~i~~~~g~---~~----~~~~~~~~----~~~~~~~~~l~~l~~~a~~~gv~i~lE~~~~ 135 (213)
T PF01261_consen 70 LEYLKKAIDLAKRLGAKYIVVHSGR---YP----SGPEDDTE----ENWERLAENLRELAEIAEEYGVRIALENHPG 135 (213)
T ss_dssp HHHHHHHHHHHHHHTBSEEEEECTT---ES----SSTTSSHH----HHHHHHHHHHHHHHHHHHHHTSEEEEE-SSS
T ss_pred HHHHHHHHHHHHHhCCCceeecCcc---cc----cccCCCHH----HHHHHHHHHHHHHHhhhhhhcceEEEecccC
Confidence 7899999999999999999999641 00 00111000 0112456789999999999999999994433
No 69
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=57.44 E-value=27 Score=35.54 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=43.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEE--EEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhc
Q psy13745 11 RILLDTARNFYTLDNIKKTIDGMAVNKLNYFH--WHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVR 88 (406)
Q Consensus 11 G~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh--~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~r 88 (406)
|+-|=.+.. +.+..+++|+.|+.+++..+- +|+. +- +..-..+++++|.++|+++
T Consensus 3 GiSvY~~~~--~~~~~~~yi~~a~~~Gf~~iFTSL~ip-------------e~--------~~~~~~~~~~~l~~~a~~~ 59 (357)
T PF05913_consen 3 GISVYPGQS--SFEENKAYIEKAAKYGFKRIFTSLHIP-------------ED--------DPEDYLERLKELLKLAKEL 59 (357)
T ss_dssp EEEE-CCCS---HHHHHHHHHHHHCTTEEEEEEEE------------------------------HHHHHHHHHHHHHHC
T ss_pred EEEEeCCCC--CHHHHHHHHHHHHHCCCCEEECCCCcC-------------CC--------CHHHHHHHHHHHHHHHHHC
Confidence 555555555 789999999999999998664 3332 21 1123678999999999999
Q ss_pred CCeeccccc
Q psy13745 89 GVHVIPELD 97 (406)
Q Consensus 89 gI~viPEid 97 (406)
|++||..|+
T Consensus 60 ~~~v~~Dis 68 (357)
T PF05913_consen 60 GMEVIADIS 68 (357)
T ss_dssp T-EEEEEE-
T ss_pred CCEEEEECC
Confidence 999999885
No 70
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=56.60 E-value=92 Score=32.35 Aligned_cols=61 Identities=7% Similarity=-0.042 Sum_probs=48.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCC
Q psy13745 11 RILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGV 90 (406)
Q Consensus 11 G~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI 90 (406)
|.|+-+|- -|.+.+......+.|.|++-+..-++|+ ...++.++++++.+.++++||
T Consensus 134 GaHvSiaG------G~~~a~~~a~~~g~~afqiF~~npr~w~-----------------~~~~~~~~~~~f~~~~~~~gi 190 (413)
T PTZ00372 134 GAHVSASG------GVDNSPINAYNIAGQAFALFLKNQRTWN-----------------SPPLSDETIDKFKENCKKYNY 190 (413)
T ss_pred EEEEeccc------cHHHHHHHHHHcCCCEEEEEcCCCccCC-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 66666653 3566788888899999999988888885 234799999999999999999
Q ss_pred eecc
Q psy13745 91 HVIP 94 (406)
Q Consensus 91 ~viP 94 (406)
.+.|
T Consensus 191 ~~~~ 194 (413)
T PTZ00372 191 DPKF 194 (413)
T ss_pred Ccce
Confidence 7544
No 71
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=55.71 E-value=16 Score=37.46 Aligned_cols=66 Identities=11% Similarity=0.176 Sum_probs=43.8
Q ss_pred HHHHHHhCCCcEEEEEEeeC-CCcccccCcCCCccccCc--------cCC-CCCCCHHHHHHHHHHHHhcCCeecc
Q psy13745 29 TIDGMAVNKLNYFHWHITDS-QSFPFESRKYPTLTQSGA--------YSS-EKIYSREDIREIVHYGLVRGVHVIP 94 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~-q~~r~e~~~~P~l~~~ga--------~~~-~~~YT~~ei~~lv~yA~~rgI~viP 94 (406)
+.......+-......+... .+|.++....++.-..-. -.| +..||++++++|+++|+++||-||=
T Consensus 126 y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~ 201 (393)
T COG0436 126 YEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITPKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIIS 201 (393)
T ss_pred HHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEE
Confidence 44556677777777776432 478877765543221100 012 4689999999999999999997763
No 72
>PRK10426 alpha-glucosidase; Provisional
Probab=55.47 E-value=63 Score=35.46 Aligned_cols=141 Identities=9% Similarity=0.032 Sum_probs=74.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccC-CCCCCCHHHHHHHHH
Q psy13745 5 EVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYS-SEKIYSREDIREIVH 83 (406)
Q Consensus 5 P~~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~-~~~~YT~~ei~~lv~ 83 (406)
|+++++|+.+- .+ -+-+.++++++.+...++-+=-++|-|-++.+.. ++..-. .+.|. ....| -+.+++|+
T Consensus 205 P~Wal~G~~~g--~~-~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~--~~g~~~-~~~~~~d~~~F--Pdp~~mi~ 276 (635)
T PRK10426 205 PDWAYDGVTLG--IQ-GGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMT--SFGKRL-MWNWKWDSERY--PQLDSRIK 276 (635)
T ss_pred ChhhccCcccc--cc-CCHHHHHHHHHHHHHcCCCeeEEEEecccccccc--cccccc-cccceEChhhC--CCHHHHHH
Confidence 78888888863 22 2467899999999999876544555343333221 111000 00010 01112 25788999
Q ss_pred HHHhcCCeecccccCCccch-hhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHH
Q psy13745 84 YGLVRGVHVIPELDAPAHVG-EGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEE 154 (406)
Q Consensus 84 yA~~rgI~viPEid~PGH~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e 154 (406)
.-+++||++|.-||--=... ...+... ...-++.-.+..++...+....++.+|.+||++.+...+.+++
T Consensus 277 ~L~~~G~k~v~~i~P~v~~~~~~y~e~~-~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~ 347 (635)
T PRK10426 277 QLNEEGIQFLGYINPYLASDGDLCEEAA-EKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKK 347 (635)
T ss_pred HHHHCCCEEEEEEcCccCCCCHHHHHHH-HCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHH
Confidence 99999999998887321111 1111000 0000111111122211111123467899999999999888764
No 73
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=54.95 E-value=38 Score=31.77 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=42.5
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 22 TLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 22 ~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+.+.|+++++.++.++.+ ++||.--. ++-..+|-.|...-........++++++++.+.|+++|+.++
T Consensus 143 ~~e~i~~ia~~l~~l~~~--~~~llpyh--~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 143 SRENMQQALDVLIPLGIK--QIHLLPFH--QYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred CHHHHHHHHHHHHHcCCc--eEEEecCC--ccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 578899999999877554 56653211 122223333322111112345799999999999999999875
No 74
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=54.49 E-value=37 Score=41.33 Aligned_cols=76 Identities=11% Similarity=0.146 Sum_probs=52.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEee----CCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeeccc
Q psy13745 20 FYTLDNIKKTIDGMAVNKLNYFHWHITD----SQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPE 95 (406)
Q Consensus 20 ~~~~~~ik~~id~ma~~KlN~lh~Hl~D----~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPE 95 (406)
-++.+.+.+.|+.++.+++|.+++=-.= ...+.+.+..|-.+. ..+=|.++++.|++-|+++||.||-.
T Consensus 754 ~~tf~~~~~~l~Yl~~LGv~~i~lsPi~~a~~gs~hGYdv~D~~~id-------p~lG~~edf~~Lv~~ah~~Gi~vilD 826 (1693)
T PRK14507 754 DFTFADAEAILPYLAALGISHVYASPILKARPGSTHGYDIVDHSQIN-------PEIGGEEGFERFCAALKAHGLGQLLD 826 (1693)
T ss_pred CCCHHHHHHHhHHHHHcCCCEEEECCCcCCCCCCCCCCCCCCCCccC-------cccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 4688999999999999999988763110 011111222221111 11228999999999999999999988
Q ss_pred ccCCccch
Q psy13745 96 LDAPAHVG 103 (406)
Q Consensus 96 id~PGH~~ 103 (406)
| +|.|+.
T Consensus 827 i-V~NH~~ 833 (1693)
T PRK14507 827 I-VPNHMG 833 (1693)
T ss_pred e-cccccC
Confidence 8 678886
No 75
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=54.39 E-value=44 Score=32.85 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=39.5
Q ss_pred EEEeCCC-CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCC
Q psy13745 12 ILLDTAR-NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGV 90 (406)
Q Consensus 12 ~mlD~aR-~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI 90 (406)
+-|.... ..++++.|++.|+....+.-+.=-+-|+. -++. ..+..||.+||++|.++|+++||
T Consensus 96 ~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~-------------t~~~---~GG~~~s~~el~ai~~~a~~~gl 159 (290)
T PF01212_consen 96 IPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLEN-------------TTEL---AGGTVYSLEELRAISELAREHGL 159 (290)
T ss_dssp EEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEES-------------SBTT---TTSB---HHHHHHHHHHHHHHT-
T ss_pred EECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEe-------------cCcC---CCCeeCCHHHHHHHHHHHHhCce
Confidence 4455555 66899999999988777333333333321 1111 12568999999999999999998
Q ss_pred ee
Q psy13745 91 HV 92 (406)
Q Consensus 91 ~v 92 (406)
.|
T Consensus 160 ~l 161 (290)
T PF01212_consen 160 PL 161 (290)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 76
>PRK01060 endonuclease IV; Provisional
Probab=54.29 E-value=54 Score=31.38 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=45.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCC
Q psy13745 11 RILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGV 90 (406)
Q Consensus 11 G~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI 90 (406)
|.|..+.+. +.+.|+.++..++..+.+-+.....|. ...+|.++++++-+.++++||
T Consensus 5 g~~~~~~~~------~~~~l~~~~~~G~d~vEl~~~~p~~~~-----------------~~~~~~~~~~~lk~~~~~~gl 61 (281)
T PRK01060 5 GAHVSAAGG------LEGAVAEAAEIGANAFMIFTGNPQQWK-----------------RKPLEELNIEAFKAACEKYGI 61 (281)
T ss_pred EEeeecCCC------HHHHHHHHHHcCCCEEEEECCCCCCCc-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 666666554 788999999999999998664322221 234799999999999999999
Q ss_pred ee
Q psy13745 91 HV 92 (406)
Q Consensus 91 ~v 92 (406)
+|
T Consensus 62 ~~ 63 (281)
T PRK01060 62 SP 63 (281)
T ss_pred CC
Confidence 96
No 77
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=53.59 E-value=36 Score=34.46 Aligned_cols=58 Identities=12% Similarity=0.123 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeeccccc
Q psy13745 18 RNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELD 97 (406)
Q Consensus 18 R~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid 97 (406)
+..++++.++++|+.++..+. ..++++- ++.+...|+.+|+++++++|+.+ .|.
T Consensus 43 ~~~~~~e~~~~ii~~~~~~g~--~~v~~~G----------------------GEPll~~~~~~il~~~~~~g~~~--~i~ 96 (378)
T PRK05301 43 GAELSTEEWIRVLREARALGA--LQLHFSG----------------------GEPLLRKDLEELVAHARELGLYT--NLI 96 (378)
T ss_pred cCCCCHHHHHHHHHHHHHcCC--cEEEEEC----------------------CccCCchhHHHHHHHHHHcCCcE--EEE
Confidence 456899999999999987764 3444432 23445567999999999999765 466
Q ss_pred CCcc
Q psy13745 98 APAH 101 (406)
Q Consensus 98 ~PGH 101 (406)
|=|.
T Consensus 97 TNG~ 100 (378)
T PRK05301 97 TSGV 100 (378)
T ss_pred CCCc
Confidence 6665
No 78
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=52.29 E-value=18 Score=37.38 Aligned_cols=62 Identities=16% Similarity=0.276 Sum_probs=39.4
Q ss_pred HHHhCCCcEEEEEEeeCCCcccccCcCCCccccCc---c-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 32 GMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA---Y-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 32 ~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga---~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
.....++++.++-+..+.+|.+......++..... + .| +..|+.+++++|++.|+++||-||
T Consensus 157 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii 227 (430)
T PLN00145 157 RAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVI 227 (430)
T ss_pred HHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 34455677777666555577666544432211100 0 12 457999999999999999998766
No 79
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=52.01 E-value=35 Score=37.42 Aligned_cols=70 Identities=16% Similarity=0.270 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCcEEEEEEeeCC----CcccccCcCCCccccCccC-----C-CCCCCHHHHHHHHHHHHhcCCeecccc
Q psy13745 27 KKTIDGMAVNKLNYFHWHITDSQ----SFPFESRKYPTLTQSGAYS-----S-EKIYSREDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 27 k~~id~ma~~KlN~lh~Hl~D~q----~~r~e~~~~P~l~~~ga~~-----~-~~~YT~~ei~~lv~yA~~rgI~viPEi 96 (406)
.++-|.+...+++.+|+--.=.. ||..- |.. -|.|. - ..+=|.+|+++|++-|.+|||.||-++
T Consensus 77 ~~~wdyL~~LGV~~iwl~P~~~SGgi~g~~~t----P~~--D~gyDi~d~~Idp~~GT~eDf~~L~~~Ah~~G~~vi~Dl 150 (688)
T TIGR02455 77 DALWKALSEIGVQGIHNGPIKLSGGIRGREFT----PSI--DGNFDRISFDIDPLLGSEEELIQLSRMAAAHNAITIDDI 150 (688)
T ss_pred hHHHHHHHHhCCCEEEeCcceecccccccCCC----CCC--CCCCCcccCccCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 46788999999999997422111 11100 100 01111 1 123399999999999999999999666
Q ss_pred cCCccch
Q psy13745 97 DAPAHVG 103 (406)
Q Consensus 97 d~PGH~~ 103 (406)
+|.|++
T Consensus 151 -VpnHTs 156 (688)
T TIGR02455 151 -IPAHTG 156 (688)
T ss_pred -CCCCCC
Confidence 578886
No 80
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=51.81 E-value=1.2e+02 Score=30.13 Aligned_cols=124 Identities=15% Similarity=0.149 Sum_probs=67.2
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccC
Q psy13745 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDA 98 (406)
Q Consensus 19 ~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~ 98 (406)
+|.+-+.++++++.+..+++-+=.+++-+ .| .+.+-.++ |.+. .| -+.+++++..+++||+|++-|+
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~--~~---~~~~~~f~----~d~~-~F--Pdp~~~i~~l~~~g~k~~~~~~- 85 (317)
T cd06600 19 SYYPQDKVVEVVDIMQKEGFPYDVVFLDI--HY---MDSYRLFT----WDPY-RF--PEPKKLIDELHKRNVKLVTIVD- 85 (317)
T ss_pred CCCCHHHHHHHHHHHHHcCCCcceEEECh--hh---hCCCCcee----echh-cC--CCHHHHHHHHHHCCCEEEEEee-
Confidence 35678999999999999999866666632 22 01111111 1111 22 2567999999999999997664
Q ss_pred Cccc----hhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy13745 99 PAHV----GEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMT 156 (406)
Q Consensus 99 PGH~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~ 156 (406)
|+-. ...+.... ...-.+.-.+..++....-......+|-+||++.++..+.++++.
T Consensus 86 P~i~~~~~~~~~~~~~-~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~ 146 (317)
T cd06600 86 PGIRVDQNYSPFLSGM-DKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWL 146 (317)
T ss_pred ccccCCCCChHHHHHH-HCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 2111 01111000 000001111111211100001123579999999999999998876
No 81
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=51.24 E-value=20 Score=36.62 Aligned_cols=61 Identities=15% Similarity=0.276 Sum_probs=39.5
Q ss_pred HHhCCCcEEEEEEeeCCCcccccCcCCCccccCc--------cCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 33 MAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA--------YSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 33 ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga--------~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
....+.....+.+.++.+|.+......++..... -.| +..||.+++++|++.|+++++-||
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii 207 (409)
T PLN00143 138 AIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVI 207 (409)
T ss_pred HHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEE
Confidence 3446677777776555677666554432211100 012 457999999999999999998776
No 82
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=51.06 E-value=1.1e+02 Score=30.38 Aligned_cols=121 Identities=7% Similarity=0.014 Sum_probs=63.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCC--CccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccc
Q psy13745 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYP--TLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 19 ~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P--~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEi 96 (406)
.+.+.+.++++++.+..+++..=.++|-.+ -| ..+- .++ |.. ..+ -+.+++++..+++||+||+-|
T Consensus 19 ~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~-~~----~~~~~~~f~----~d~-~~F--Pdp~~mi~~L~~~G~kv~~~i 86 (319)
T cd06591 19 RYKTQEELLDVAKEYRKRGIPLDVIVQDWF-YW----PKQGWGEWK----FDP-ERF--PDPKAMVRELHEMNAELMISI 86 (319)
T ss_pred cCCCHHHHHHHHHHHHHhCCCccEEEEech-hh----cCCCceeEE----ECh-hhC--CCHHHHHHHHHHCCCEEEEEe
Confidence 356899999999999999987666655321 11 0110 111 111 112 256889999999999999866
Q ss_pred cCCccch--hhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHH
Q psy13745 97 DAPAHVG--EGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEE 154 (406)
Q Consensus 97 d~PGH~~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e 154 (406)
+ |+=.. ..++..... .-.+...+..++. .+.......+|.+||++.+...+.+++
T Consensus 87 ~-P~v~~~~~~y~e~~~~-g~~v~~~~g~~~~-~~w~g~~~~~Dftnp~a~~w~~~~~~~ 143 (319)
T cd06591 87 W-PTFGPETENYKEMDEK-GYLIKTDRGPRVT-MQFGGNTRFYDATNPEAREYYWKQLKK 143 (319)
T ss_pred c-CCcCCCChhHHHHHHC-CEEEEcCCCCeee-eeCCCCccccCCCCHHHHHHHHHHHHH
Confidence 5 43110 001100000 0011111111110 000112356899999999976665554
No 83
>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=49.56 E-value=40 Score=33.71 Aligned_cols=59 Identities=15% Similarity=0.118 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeeccccc
Q psy13745 18 RNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELD 97 (406)
Q Consensus 18 R~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid 97 (406)
+..++.+.++++|+.+...+.- .++++- ++..-..++.+|+++|+++|+.+ .|.
T Consensus 34 ~~~l~~e~~~~ii~~~~~~g~~--~v~~~G----------------------GEPll~~~~~~ii~~~~~~g~~~--~l~ 87 (358)
T TIGR02109 34 KAELTTEEWTDVLTQAAELGVL--QLHFSG----------------------GEPLARPDLVELVAHARRLGLYT--NLI 87 (358)
T ss_pred cCCCCHHHHHHHHHHHHhcCCc--EEEEeC----------------------ccccccccHHHHHHHHHHcCCeE--EEE
Confidence 4568999999999999887654 444432 12233457889999999999764 566
Q ss_pred CCccc
Q psy13745 98 APAHV 102 (406)
Q Consensus 98 ~PGH~ 102 (406)
|-|..
T Consensus 88 TNG~l 92 (358)
T TIGR02109 88 TSGVG 92 (358)
T ss_pred eCCcc
Confidence 76753
No 84
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=49.28 E-value=49 Score=32.47 Aligned_cols=70 Identities=9% Similarity=0.164 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeCC-CcccccCcCCCccccC---c---c-CCCCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 22 TLDNIKKTIDGMAVNKLNYFHWHITDSQ-SFPFESRKYPTLTQSG---A---Y-SSEKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 22 ~~~~ik~~id~ma~~KlN~lh~Hl~D~q-~~r~e~~~~P~l~~~g---a---~-~~~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
..+..+.+++..+..++|++++-+.-.. +..-. ..+|...-.+ . + +++..| -+.+..+|++|.++||.+.
T Consensus 28 ~~~e~~~yL~~r~~qgFN~iq~~~l~~~~~~~~~-n~~~~~~~~~~~~~~~d~~~~N~~Y-F~~~d~~i~~a~~~Gi~~~ 105 (289)
T PF13204_consen 28 TREEWEQYLDTRKEQGFNVIQMNVLPQWDGYNTP-NRYGFAPFPDEDPGQFDFTRPNPAY-FDHLDRRIEKANELGIEAA 105 (289)
T ss_dssp -HHHHHHHHHHHHHTT--EEEEES-SSSS-B-----TTS-BS-SSTT------TT----H-HHHHHHHHHHHHHTT-EEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEeCCCccccccc-ccCCCcCCCCCCccccCCCCCCHHH-HHHHHHHHHHHHHCCCeEE
Confidence 4578899999999999999999876321 11111 1122221100 0 0 011111 2568899999999999874
No 85
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=48.83 E-value=27 Score=32.59 Aligned_cols=84 Identities=13% Similarity=0.243 Sum_probs=62.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcc---cccCcCCCccccCccCCCCCCCHHHH-----------------HH
Q psy13745 21 YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFP---FESRKYPTLTQSGAYSSEKIYSREDI-----------------RE 80 (406)
Q Consensus 21 ~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r---~e~~~~P~l~~~ga~~~~~~YT~~ei-----------------~~ 80 (406)
.+.+...++.+.|...++..+-+-++...... --.+.||++. .|+ +..+|.+|. .+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~-vGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~ 92 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDAL-IGA---GTVLNPEQLRQAVDAGAQFIVSPGLTPE 92 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCE-EEE---EeCCCHHHHHHHHHcCCCEEECCCCCHH
Confidence 37888999999999999999999887655432 1124577643 444 345555554 46
Q ss_pred HHHHHHhcCCeecccccCCccchhhhcc
Q psy13745 81 IVHYGLVRGVHVIPELDAPAHVGEGWNS 108 (406)
Q Consensus 81 lv~yA~~rgI~viPEid~PGH~~a~~~~ 108 (406)
++++|+++||-++|=+=||.....++..
T Consensus 93 v~~~~~~~~i~~iPG~~TptEi~~A~~~ 120 (204)
T TIGR01182 93 LAKHAQDHGIPIIPGVATPSEIMLALEL 120 (204)
T ss_pred HHHHHHHcCCcEECCCCCHHHHHHHHHC
Confidence 8899999999999999999988877653
No 86
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=48.64 E-value=4.2e+02 Score=29.43 Aligned_cols=166 Identities=16% Similarity=0.180 Sum_probs=89.8
Q ss_pred CcceEEEeCCCCCCC-----HHHHHHHHHHHHhCCCcEEEEEEeeC---CCcccccCcCCCccccCccCCCCCCCHHHHH
Q psy13745 8 QSARILLDTARNFYT-----LDNIKKTIDGMAVNKLNYFHWHITDS---QSFPFESRKYPTLTQSGAYSSEKIYSREDIR 79 (406)
Q Consensus 8 ~~RG~mlD~aR~~~~-----~~~ik~~id~ma~~KlN~lh~Hl~D~---q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~ 79 (406)
.-|-+|+|.---+-| .+.|..+||.|...|+|++-++.--| -|. ..+.-+|.=.-.| ....|++=..
T Consensus 313 ~~r~~h~dld~vyd~dp~qq~~~L~~lLdrlk~~G~ntV~lqafadp~gd~~-~~s~yfP~~~lp~---r~d~f~~~aw- 387 (671)
T PRK14582 313 PQRVMHIDLDYVYDENPQQQDRNIDVLIQRVKDMQISTVYLQAFADPDGDGL-VKELYFPNRLLPM---RADLFNRVAW- 387 (671)
T ss_pred CEEEEEeccccccCCCHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCcc-ccccccCcccccc---ccCCcCHHHH-
Confidence 467888876544422 46788999999999999999997222 121 2222333200001 1223444222
Q ss_pred HHHHHHHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccC-CCCCCCCCChhHHHHHHHHHHHHHhh
Q psy13745 80 EIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEP-PCGQLNPVSDRVYEVLGGLYEEMTDL 158 (406)
Q Consensus 80 ~lv~yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~t~~f~~~l~~e~~~~ 158 (406)
+.|.++||+|.--+.+.+=... ..... -..+. .+..|-+ +.+ ....|+|.+|++.++|.+|+.|++.-
T Consensus 388 ---~l~~r~~v~v~AWmp~~~~~~~---~~~~~-~~~~~-~~~~~~~---~~~~~~~rl~P~~pe~r~~i~~i~~dla~~ 456 (671)
T PRK14582 388 ---QLRTRAGVNVYAWMPVLSFDLD---PTLPR-VKRLD-TGEGKAQ---IHPEQYRRLSPFDDRVRAQVGMLYEDLAGH 456 (671)
T ss_pred ---HHHHhhCCEEEEeccceeeccC---CCcch-hhhcc-ccCCccc---cCCCCCcCCCCCCHHHHHHHHHHHHHHHHh
Confidence 2288899999766555432110 00000 00011 0000000 000 01459999999999999999999986
Q ss_pred ccCCCCceEEecCCcccccccc-CCh-HHHHHHHhcc
Q psy13745 159 FRTDLSGLFHMGGDEVNMNCWN-HTK-SITDWMYAKF 193 (406)
Q Consensus 159 f~~~~~~~iHiGgDE~~~~~w~-~~~-~~~~~~~~g~ 193 (406)
.+-+ =||+- |+.....++ .+| .+++|-+.|+
T Consensus 457 ~~~d---Gilf~-Dd~~l~d~ed~s~~a~~~~~~~g~ 489 (671)
T PRK14582 457 AAFD---GILFH-DDAVLSDYEDASAPAITAYQQAGF 489 (671)
T ss_pred CCCc---eEEec-ccccccccccCCHHHHHHHHHcCC
Confidence 5544 46665 555555454 344 3455544443
No 87
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=48.26 E-value=2.3e+02 Score=28.34 Aligned_cols=125 Identities=14% Similarity=0.139 Sum_probs=70.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeC-----CCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDS-----QSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 19 ~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~-----q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+|.+-+.++++++.+...++..=-+++-++ ..|.+.-+ .|..-..+++|+..+++||+|+
T Consensus 19 ~y~~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~---------------~FPdp~~~~mi~~L~~~G~k~~ 83 (339)
T cd06602 19 GYKNVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPV---------------RFPGLKMPEFVDELHANGQHYV 83 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccc---------------cCCCccHHHHHHHHHHCCCEEE
Confidence 456899999999999999997655665321 12222222 2332233889999999999999
Q ss_pred ccccCCccchh-------hhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc
Q psy13745 94 PELDAPAHVGE-------GWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160 (406)
Q Consensus 94 PEid~PGH~~a-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~ 160 (406)
+-|+ |+-... .++.. ....-.+.-.+..++...+-......+|-+||++.+...+.++++..-..
T Consensus 84 ~~i~-P~v~~~~~~~~~~~~~e~-~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~G 155 (339)
T cd06602 84 PILD-PAISANEPTGSYPPYDRG-LEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVP 155 (339)
T ss_pred EEEe-CccccCcCCCCCHHHHHH-HHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCC
Confidence 9875 432210 00000 00000011011112111111112345799999999999999888775433
No 88
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=46.91 E-value=33 Score=31.95 Aligned_cols=84 Identities=12% Similarity=0.132 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccc---cCcCCCccccCccCCCCCCCHHHHH-----------------H
Q psy13745 21 YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFE---SRKYPTLTQSGAYSSEKIYSREDIR-----------------E 80 (406)
Q Consensus 21 ~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e---~~~~P~l~~~ga~~~~~~YT~~ei~-----------------~ 80 (406)
.+.+...++++.|..-++..+-+-++..+....- .+.||++. .|+ +..+|.+|.+ +
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~-vGA---GTVl~~e~a~~ai~aGA~FivSP~~~~~ 88 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAI-VGA---GTILNAKQFEDAAKAGSRFIVSPGTTQE 88 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCE-Eee---EeCcCHHHHHHHHHcCCCEEECCCCCHH
Confidence 3788999999999999999999999876654311 23577653 454 4566666664 6
Q ss_pred HHHHHHhcCCeecccccCCccchhhhcc
Q psy13745 81 IVHYGLVRGVHVIPELDAPAHVGEGWNS 108 (406)
Q Consensus 81 lv~yA~~rgI~viPEid~PGH~~a~~~~ 108 (406)
++++|+++||-+||=.=||.-...+++.
T Consensus 89 vi~~a~~~~i~~iPG~~TptEi~~A~~~ 116 (201)
T PRK06015 89 LLAAANDSDVPLLPGAATPSEVMALREE 116 (201)
T ss_pred HHHHHHHcCCCEeCCCCCHHHHHHHHHC
Confidence 8899999999999999999887776653
No 89
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=46.57 E-value=28 Score=34.95 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=39.1
Q ss_pred HHhCCCcEEEEEEeeCCCcccccCcCCCc-ccc--Ccc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 33 MAVNKLNYFHWHITDSQSFPFESRKYPTL-TQS--GAY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 33 ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~~--ga~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
...++.++..+-+.++.||.++...+.+. ... ..+ .| +..||.+++++|++.|+++|+-||
T Consensus 134 ~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii 203 (385)
T PRK09276 134 TIFAGGEPYFMPLKEENGFLPDLDAIPEDVAKKAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVC 203 (385)
T ss_pred HHHcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEE
Confidence 44567777777775566786554433211 110 001 12 467999999999999999998665
No 90
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=46.52 E-value=22 Score=35.96 Aligned_cols=63 Identities=6% Similarity=0.114 Sum_probs=40.0
Q ss_pred HHHHhCCCcEEEEEEeeCCCcccccCcCCCcc-c--cCcc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 31 DGMAVNKLNYFHWHITDSQSFPFESRKYPTLT-Q--SGAY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 31 d~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~-~--~ga~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
..+...+.++..+-+..+.+|.+......+.. . +..+ .| +..||.+++++|++.|+++++-||
T Consensus 132 ~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii 203 (396)
T PRK09147 132 GAALLAGAEPYFLNCDPANNFAPDFDAVPAEVWARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIA 203 (396)
T ss_pred HHHHhcCCEEEEeccCccccCccCHHHHHHHHhhccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEE
Confidence 33455677777777655556766554432211 1 0011 12 468999999999999999998766
No 91
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=45.21 E-value=1.4e+02 Score=29.83 Aligned_cols=125 Identities=14% Similarity=0.209 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccC
Q psy13745 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDA 98 (406)
Q Consensus 19 ~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~ 98 (406)
.+.+-+.|+++++.+..+++-.=.+++-++ |- ..+..++ |. ...|. +.+++++..+++|+++++-++-
T Consensus 19 ~y~~~~~v~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~----~d-~~~fP--dp~~m~~~l~~~g~~~~~~~~P 86 (339)
T cd06604 19 SYYPEEEVREIADEFRERDIPCDAIYLDID--YM---DGYRVFT----WD-KERFP--DPKELIKELHEQGFKVVTIIDP 86 (339)
T ss_pred CCCCHHHHHHHHHHHHHhCCCcceEEECch--hh---CCCCcee----ec-cccCC--CHHHHHHHHHHCCCEEEEEEeC
Confidence 456789999999999999997655555322 21 1121111 11 12233 5689999999999999876543
Q ss_pred Cccch---hhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHH
Q psy13745 99 PAHVG---EGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMT 156 (406)
Q Consensus 99 PGH~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~ 156 (406)
-=... ...... ....-.+.-.+..++...+.......+|.+||++.++..++++++.
T Consensus 87 ~v~~~~~~~~~~e~-~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~ 146 (339)
T cd06604 87 GVKVDPGYDVYEEG-LENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFV 146 (339)
T ss_pred ceeCCCCChHHHHH-HHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHh
Confidence 11110 001000 0000011111112221111111235679999999999998888876
No 92
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=44.58 E-value=58 Score=31.00 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccCC
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAP 99 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~P 99 (406)
++.+++.|+..+.++...+.+|.... ++.- . ..+ .| --..+-+++|.++|+++||+|.-|--.|
T Consensus 89 ~~~~~~~i~~a~~lGa~~i~~~~~~~-~~~~---~---~~~--~~----~~~~~~l~~l~~~a~~~gv~l~iE~~~~ 152 (275)
T PRK09856 89 LDMIKLAMDMAKEMNAGYTLISAAHA-GYLT---P---PNV--IW----GRLAENLSELCEYAENIGMDLILEPLTP 152 (275)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCCC-CCCC---C---HHH--HH----HHHHHHHHHHHHHHHHcCCEEEEecCCC
Confidence 56888999999999999999886432 2110 0 000 00 1133568999999999999999885433
No 93
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=44.24 E-value=1.5e+02 Score=29.59 Aligned_cols=126 Identities=12% Similarity=0.149 Sum_probs=70.8
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeeccccc
Q psy13745 18 RNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELD 97 (406)
Q Consensus 18 R~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid 97 (406)
..|.+-+.++++++.+..+++.+=.+++-++ |- ..+-.++ |. ...|. +.+.+++.-+++|++|++-++
T Consensus 18 ~~y~~~~ev~~~~~~~~~~~iP~d~i~lD~~--~~---~~~~~f~----~d-~~~FP--dp~~mi~~L~~~G~k~~~~~~ 85 (339)
T cd06603 18 WNYKDQEDVKEVDAGFDEHDIPYDVIWLDIE--HT---DGKRYFT----WD-KKKFP--DPEKMQEKLASKGRKLVTIVD 85 (339)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCceEEEEChH--Hh---CCCCceE----eC-cccCC--CHHHHHHHHHHCCCEEEEEec
Confidence 3456799999999999999998766666321 10 1111111 11 12232 668899999999999999886
Q ss_pred CCccch----hhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHh
Q psy13745 98 APAHVG----EGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTD 157 (406)
Q Consensus 98 ~PGH~~----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~ 157 (406)
|+-.. ...+... ...-.+.-.+..++....-...+..+|-+||++.++..+.++++..
T Consensus 86 -P~v~~~~~~~~y~e~~-~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~ 147 (339)
T cd06603 86 -PHIKRDDGYYVYKEAK-DKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKY 147 (339)
T ss_pred -CceecCCCCHHHHHHH-HCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhh
Confidence 33211 0111000 0000010111112111000112357899999999999999998764
No 94
>PRK06348 aspartate aminotransferase; Provisional
Probab=44.06 E-value=28 Score=35.12 Aligned_cols=24 Identities=21% Similarity=0.484 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+..+|.+++++|++.|+++|+-||
T Consensus 176 G~~~s~~~~~~l~~~a~~~~~~ii 199 (384)
T PRK06348 176 GAVFSKETLEEIAKIAIEYDLFII 199 (384)
T ss_pred CcCCCHHHHHHHHHHHHHCCeEEE
Confidence 457999999999999999998766
No 95
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=43.56 E-value=26 Score=34.80 Aligned_cols=61 Identities=8% Similarity=0.055 Sum_probs=37.3
Q ss_pred HHhCCCcEEEEEEeeCCCcccccCcCCCccccC---cc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 33 MAVNKLNYFHWHITDSQSFPFESRKYPTLTQSG---AY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 33 ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~g---a~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+..++.++..+.+.++.||.++...+.++-..+ .+ .| +..|+.+++++|++.|+++|+-||
T Consensus 104 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii 173 (350)
T TIGR03537 104 ALFAGGEPTAVKLKKEDGFLLRLEKVEKSILEETKIVWINYPHNPTGATAPRSYLKETIAMCREHGIILC 173 (350)
T ss_pred HHhcCCEEEEcccCcccCCccCHHHHHHhhhhccEEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCcEEE
Confidence 345677777666654556755443322110000 01 12 457999999999999999998666
No 96
>PLN02187 rooty/superroot1
Probab=42.66 E-value=34 Score=35.81 Aligned_cols=62 Identities=11% Similarity=0.278 Sum_probs=40.0
Q ss_pred HHHhCCCcEEEEEEeeCCCcccccCcCCCccccCc--------cCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 32 GMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA--------YSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 32 ~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga--------~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
.....+..+.++-+.++.+|.+....+.++..... -.| +..||++++++|++.|+++||-||
T Consensus 171 ~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI 241 (462)
T PLN02187 171 RAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVI 241 (462)
T ss_pred HHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEE
Confidence 44566777777776544567665544432211110 012 457999999999999999998766
No 97
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=42.39 E-value=36 Score=32.75 Aligned_cols=65 Identities=17% Similarity=0.334 Sum_probs=45.0
Q ss_pred cCCCCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHH
Q psy13745 4 IEVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVH 83 (406)
Q Consensus 4 ~P~~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~ 83 (406)
.||-.=-=+++|-+ +++..++.+++.++.| .| +-++ +|+....|.++-+++.++
T Consensus 8 KPR~~GlT~v~Dkg---lg~~~~~dlLe~ag~y---------ID-------~~K~-------g~Gt~~l~~~~~l~eki~ 61 (244)
T PF02679_consen 8 KPRSRGLTMVIDKG---LGLRYLEDLLESAGDY---------ID-------FLKF-------GWGTSALYPEEILKEKID 61 (244)
T ss_dssp SS-SSS-EEEEESS-----HHHHHHHHHHHGGG----------S-------EEEE--------TTGGGGSTCHHHHHHHH
T ss_pred CCCCCCcEEEecCC---CCHHHHHHHHHHhhhh---------cc-------EEEe-------cCceeeecCHHHHHHHHH
Confidence 46655566899988 9999999999999854 22 2121 133346789999999999
Q ss_pred HHHhcCCeecc
Q psy13745 84 YGLVRGVHVIP 94 (406)
Q Consensus 84 yA~~rgI~viP 94 (406)
.|+++||.|.|
T Consensus 62 l~~~~gV~v~~ 72 (244)
T PF02679_consen 62 LAHSHGVYVYP 72 (244)
T ss_dssp HHHCTT-EEEE
T ss_pred HHHHcCCeEeC
Confidence 99999999976
No 98
>PLN02877 alpha-amylase/limit dextrinase
Probab=41.80 E-value=75 Score=36.62 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCCeecccccCCccch
Q psy13745 75 REDIREIVHYGLVRGVHVIPELDAPAHVG 103 (406)
Q Consensus 75 ~~ei~~lv~yA~~rgI~viPEid~PGH~~ 103 (406)
-.|+|++|+-+.++||+||..+ ++-|+.
T Consensus 465 I~efk~mV~~lH~~GI~VImDV-VyNHt~ 492 (970)
T PLN02877 465 IIEFRKMVQALNRIGLRVVLDV-VYNHLH 492 (970)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-CCcccc
Confidence 3689999999999999999876 677874
No 99
>PTZ00377 alanine aminotransferase; Provisional
Probab=41.79 E-value=29 Score=36.41 Aligned_cols=65 Identities=8% Similarity=0.263 Sum_probs=42.6
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCc-cc--------cCcc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTL-TQ--------SGAY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~--------~ga~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+...+..++.++..+.+..+.||.+....+.+. +. +..+ .| +..||++++++|++.|+++++-||
T Consensus 176 y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI 255 (481)
T PTZ00377 176 YSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLM 255 (481)
T ss_pred HHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEE
Confidence 445556677888888776666787654433221 10 0001 12 457999999999999999998665
No 100
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.65 E-value=41 Score=31.53 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcc-c--ccCcC---CCccccCccCCCCCCCHHHHH---------------
Q psy13745 21 YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFP-F--ESRKY---PTLTQSGAYSSEKIYSREDIR--------------- 79 (406)
Q Consensus 21 ~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r-~--e~~~~---P~l~~~ga~~~~~~YT~~ei~--------------- 79 (406)
.+.+...++++.|..-++.++-+=++...+.. | -.+.| |++. .|+ +..+|.+|++
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~-vGa---GTV~~~~~~~~a~~aGA~FivsP~~ 97 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVL-IGA---GTVLDAVTARLAILAGAQFIVSPSF 97 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeE-Eee---eeCCCHHHHHHHHHcCCCEEECCCC
Confidence 37889999999999999999999987554332 1 11234 3343 343 5667777776
Q ss_pred --HHHHHHHhcCCeecccccCCccchhhhc
Q psy13745 80 --EIVHYGLVRGVHVIPELDAPAHVGEGWN 107 (406)
Q Consensus 80 --~lv~yA~~rgI~viPEid~PGH~~a~~~ 107 (406)
+++++|+++||-+||-.-+|.-...+++
T Consensus 98 ~~~v~~~~~~~~i~~iPG~~T~~E~~~A~~ 127 (213)
T PRK06552 98 NRETAKICNLYQIPYLPGCMTVTEIVTALE 127 (213)
T ss_pred CHHHHHHHHHcCCCEECCcCCHHHHHHHHH
Confidence 7899999999999999999977776654
No 101
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=41.40 E-value=74 Score=32.92 Aligned_cols=69 Identities=20% Similarity=0.269 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCC-ccccCccC-----C-CCCCCHHHHHHHHHHHHhcCCeeccc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPT-LTQSGAYS-----S-EKIYSREDIREIVHYGLVRGVHVIPE 95 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~-l~~~ga~~-----~-~~~YT~~ei~~lv~yA~~rgI~viPE 95 (406)
+.-|.+-+|.+..++++.+++= |-++. ....|.+. - ..+=|.+|++++++-|.+|||.||..
T Consensus 28 l~Gi~~~LdYl~~LGv~aiwl~-----------Pi~~s~~~~~gY~~~Dy~~id~~~Gt~~d~~~li~~~H~~gi~vi~D 96 (505)
T COG0366 28 LKGITEKLDYLKELGVDAIWLS-----------PIFESPQADHGYDVSDYTKVDPHFGTEEDFKELVEEAHKRGIKVILD 96 (505)
T ss_pred HHhHHHhhhHHHHhCCCEEEeC-----------CCCCCCccCCCccccchhhcCcccCCHHHHHHHHHHHHHCCCEEEEE
Confidence 5566789999999999999873 22222 11111110 1 13449999999999999999999998
Q ss_pred ccCCccch
Q psy13745 96 LDAPAHVG 103 (406)
Q Consensus 96 id~PGH~~ 103 (406)
+- .-|+.
T Consensus 97 ~V-~NH~s 103 (505)
T COG0366 97 LV-FNHTS 103 (505)
T ss_pred ec-cCcCC
Confidence 74 45555
No 102
>TIGR03586 PseI pseudaminic acid synthase.
Probab=41.28 E-value=71 Score=32.07 Aligned_cols=84 Identities=12% Similarity=0.098 Sum_probs=53.2
Q ss_pred CCCCCC-CHHHHHHHHHHHHhCCCcE--EEEEEeeCCCcccccCcCCC--ccccCccCC--------CCCCCHHHHHHHH
Q psy13745 16 TARNFY-TLDNIKKTIDGMAVNKLNY--FHWHITDSQSFPFESRKYPT--LTQSGAYSS--------EKIYSREDIREIV 82 (406)
Q Consensus 16 ~aR~~~-~~~~ik~~id~ma~~KlN~--lh~Hl~D~q~~r~e~~~~P~--l~~~ga~~~--------~~~YT~~ei~~lv 82 (406)
++-|+- +++..|++||..+..+-+. ||.+..|.- -.+..++ ..+.+.|.. .-.++.++.++|.
T Consensus 8 iG~NH~G~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l----~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~ 83 (327)
T TIGR03586 8 LSANHNGSLERALAMIEAAKAAGADAIKLQTYTPDTI----TLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELF 83 (327)
T ss_pred ECCCCCChHHHHHHHHHHHHHhCCCEEEeeeccHHHh----hccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHH
Confidence 344443 6899999999999999884 555433321 0111110 001122211 1247889999999
Q ss_pred HHHHhcCCeecccccCCccch
Q psy13745 83 HYGLVRGVHVIPELDAPAHVG 103 (406)
Q Consensus 83 ~yA~~rgI~viPEid~PGH~~ 103 (406)
+||+++||.++-+.=-..+..
T Consensus 84 ~~~~~~Gi~~~stpfd~~svd 104 (327)
T TIGR03586 84 ERAKELGLTIFSSPFDETAVD 104 (327)
T ss_pred HHHHHhCCcEEEccCCHHHHH
Confidence 999999999998876666555
No 103
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=41.25 E-value=2.2e+02 Score=25.54 Aligned_cols=78 Identities=17% Similarity=0.167 Sum_probs=52.3
Q ss_pred eEEEeCCCC----CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCC--CCHHHHHHHHHH
Q psy13745 11 RILLDTARN----FYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKI--YSREDIREIVHY 84 (406)
Q Consensus 11 G~mlD~aR~----~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~--YT~~ei~~lv~y 84 (406)
|..|+.-.+ =++.+...+.+..|...++|+|-+=-+-..++.+ ||. + + .+.++ =+.+=+..+.+.
T Consensus 3 GtF~q~~~~d~~~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~----yps--~-~--~~~~~~~~~~d~l~~~L~~ 73 (166)
T PF14488_consen 3 GTFLQPWSWDIHQNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAF----YPS--K-L--SPGGFYMPPVDLLEMILDA 73 (166)
T ss_pred eEEEccccchhhcCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCccc----CCc--c-c--cCccccCCcccHHHHHHHH
Confidence 556665443 4788999999999999999998776554444321 221 0 0 01111 145678899999
Q ss_pred HHhcCCeeccccc
Q psy13745 85 GLVRGVHVIPELD 97 (406)
Q Consensus 85 A~~rgI~viPEid 97 (406)
|.+.|+.|+.-+.
T Consensus 74 A~~~Gmkv~~Gl~ 86 (166)
T PF14488_consen 74 ADKYGMKVFVGLY 86 (166)
T ss_pred HHHcCCEEEEeCC
Confidence 9999999987554
No 104
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.16 E-value=2.4e+02 Score=27.06 Aligned_cols=60 Identities=8% Similarity=-0.007 Sum_probs=46.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCC
Q psy13745 11 RILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGV 90 (406)
Q Consensus 11 G~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI 90 (406)
|.|+-++ .-+.+.|+.++..+++.+++-..+-++|. ...++.++++++-+.+.++++
T Consensus 4 g~h~s~~------g~~~~a~~~~~~~G~~~~qif~~~P~~w~-----------------~~~~~~~~~~~~~~~~~~~~~ 60 (274)
T TIGR00587 4 GAHVSAA------GGLQAAYNRAAEIGATAFMFFLKSPRWWR-----------------RPMLEEEVIDWFKAALETNKN 60 (274)
T ss_pred EEEEecc------CCHHHHHHHHHHhCCCEEEEEecCccccC-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 5555555 24677999999999999999887766664 235688899999999999988
Q ss_pred eec
Q psy13745 91 HVI 93 (406)
Q Consensus 91 ~vi 93 (406)
.+.
T Consensus 61 ~~~ 63 (274)
T TIGR00587 61 LSQ 63 (274)
T ss_pred CCc
Confidence 643
No 105
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=41.04 E-value=22 Score=37.20 Aligned_cols=59 Identities=15% Similarity=0.290 Sum_probs=38.6
Q ss_pred hCCCcEEEEEEeeCCCcccccCcCCCcc-c--------cCcc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 35 VNKLNYFHWHITDSQSFPFESRKYPTLT-Q--------SGAY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 35 ~~KlN~lh~Hl~D~q~~r~e~~~~P~l~-~--------~ga~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
..+.+++.+++.++.||.+....+.+.- + +..+ .| +..||.+++++|++.|+++++-||
T Consensus 155 ~~g~~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI 228 (468)
T PLN02450 155 RTGVEIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLI 228 (468)
T ss_pred cCCcEEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEE
Confidence 4677888888765677766443322110 0 0011 12 457999999999999999998776
No 106
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=40.82 E-value=1.1e+02 Score=30.40 Aligned_cols=125 Identities=11% Similarity=0.138 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccc-cCccCCCCCCCHHHHHHHHHHHHhcCCeecccccCCcc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQ-SGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAPAH 101 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~-~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~PGH 101 (406)
...+-.++...+.+|||.|-.-+-||-|= +-.++--++.+ .++ .=.-.||+-+++-|++.||-+|--|=+.--
T Consensus 76 kk~~de~fk~ikdn~~Na~ViD~Kdd~G~-lty~s~d~~~~~~~s-----v~~f~Di~~~iKkaKe~giY~IARiVvFKD 149 (400)
T COG1306 76 KKRLDELFKLIKDNNINAFVIDVKDDYGE-LTYPSSDEINKYTKS-----VNKFKDIEPVIKKAKENGIYAIARIVVFKD 149 (400)
T ss_pred hhHHHHHHHHHHhCCCCEEEEEecCCCcc-Eeccccchhhhhhhc-----cccccccHHHHHHHHhcCeEEEEEEEEeee
Confidence 44566788889999999999999998763 11111111211 111 122468999999999999999988755543
Q ss_pred chhhhccccccccccccccCCCcCcccccc------CCCCCCCCCChhHHHHHHHHHHHHHh
Q psy13745 102 VGEGWNSIEKQKDELLVCFKKEPWTKFCVE------PPCGQLNPVSDRVYEVLGGLYEEMTD 157 (406)
Q Consensus 102 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~t~~f~~~l~~e~~~ 157 (406)
+-- .++ ....+....+..||..+... ....=.|+-++.+++.=-.|-+|.++
T Consensus 150 ~~l-~~~---n~fk~av~~~gKpw~~~~ngaLrKe~~~ehWVd~y~~~~WeYNvtIAKEa~~ 207 (400)
T COG1306 150 TIL-AKE---NPFKIAVYKDGKPWKAFTNGALRKESDGEHWVDAYDKNLWEYNVTIAKEAAK 207 (400)
T ss_pred eeE-Eee---cCceEEEEcCCCcchhhhcccccccccceeeecccchhhhhhhHHHHHHHHH
Confidence 321 111 00111222334577665431 11122578889999999899999876
No 107
>PLN02656 tyrosine transaminase
Probab=40.44 E-value=37 Score=34.68 Aligned_cols=59 Identities=12% Similarity=0.173 Sum_probs=36.3
Q ss_pred hCCCcEEEEEEeeCCCcccccCcCCCccccCc--------cCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 35 VNKLNYFHWHITDSQSFPFESRKYPTLTQSGA--------YSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 35 ~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga--------~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
..++++..+.+.++.+|.+.++.+.++-.... -.+ +..+|.+++++|++.|+++|+-||
T Consensus 139 ~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii 206 (409)
T PLN02656 139 FRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVI 206 (409)
T ss_pred HcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 35666666666444567665543322111000 012 457899999999999999998666
No 108
>PLN02368 alanine transaminase
Probab=40.34 E-value=28 Score=35.79 Aligned_cols=63 Identities=11% Similarity=0.239 Sum_probs=39.1
Q ss_pred HHHHhCCCcEEEEEEeeCCCcccccCcCCCc-cc---cC-----c-----cCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 31 DGMAVNKLNYFHWHITDSQSFPFESRKYPTL-TQ---SG-----A-----YSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 31 d~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~---~g-----a-----~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
..+...+.++....+..+.+|.+....+.+. +. .+ . ..| +..||++++++|++.|+++++-||
T Consensus 170 ~~~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II 247 (407)
T PLN02368 170 ATISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLL 247 (407)
T ss_pred HHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 3445566777777665555666544333211 10 00 0 012 457999999999999999998776
No 109
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=40.18 E-value=74 Score=33.07 Aligned_cols=81 Identities=19% Similarity=0.236 Sum_probs=51.8
Q ss_pred cceEEEeCCCCC---CC---HHHHHHHHHHHH-hCCC-cEEEEEEeeCCCcc-cccCcCCCccccCccCCCCCCCHHHHH
Q psy13745 9 SARILLDTARNF---YT---LDNIKKTIDGMA-VNKL-NYFHWHITDSQSFP-FESRKYPTLTQSGAYSSEKIYSREDIR 79 (406)
Q Consensus 9 ~RG~mlD~aR~~---~~---~~~ik~~id~ma-~~Kl-N~lh~Hl~D~q~~r-~e~~~~P~l~~~ga~~~~~~YT~~ei~ 79 (406)
.=|+.||++.-| +. .+.+.++++.+- ..++ ..-|+||.|+.+=. =-.+.+-.+ ..|..-.+-++
T Consensus 302 rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~~~GS~~DRH~~I-------G~G~Ig~~~f~ 374 (413)
T PTZ00372 302 RVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKSDLGSGLDRHENI-------GKGKLGMETFK 374 (413)
T ss_pred CeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCCccCCCcccccCc-------CCCCcChHHHH
Confidence 359999999876 43 345666666653 3344 46678888864310 000111111 25778899999
Q ss_pred HHHHHHHhcCCeecccc
Q psy13745 80 EIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 80 ~lv~yA~~rgI~viPEi 96 (406)
.|+...+-.+|.+|-|.
T Consensus 375 ~l~~~~~~~~iP~ILET 391 (413)
T PTZ00372 375 FIMNSKYFKNIPIILET 391 (413)
T ss_pred HHHhChhhCCCeEEEeC
Confidence 99998888899888774
No 110
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=40.13 E-value=33 Score=33.16 Aligned_cols=93 Identities=15% Similarity=0.157 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHH
Q psy13745 71 KIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGG 150 (406)
Q Consensus 71 ~~YT~~ei~~lv~yA~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~ 150 (406)
..++++++++|+++|.++|.+++-|+..--+..-+++.. ...++ +|-.|=.|++.--+
T Consensus 138 ~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~g----a~iIG------------------INnRdL~tf~vdl~ 195 (254)
T COG0134 138 AALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLG----AKIIG------------------INNRDLTTLEVDLE 195 (254)
T ss_pred HhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCC----CCEEE------------------EeCCCcchheecHH
Confidence 369999999999999999999999997777766554421 11222 12233445555555
Q ss_pred HHHHHHhhccCCCCceEEecCCccccccccCChHHHHHHHhcc
Q psy13745 151 LYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDWMYAKF 193 (406)
Q Consensus 151 l~~e~~~~f~~~~~~~iHiGgDE~~~~~w~~~~~~~~~~~~g~ 193 (406)
...++++..|.. .+=|. |.- -....+++.+.+.|.
T Consensus 196 ~t~~la~~~p~~---~~~Is--ESG---I~~~~dv~~l~~~ga 230 (254)
T COG0134 196 TTEKLAPLIPKD---VILIS--ESG---ISTPEDVRRLAKAGA 230 (254)
T ss_pred HHHHHHhhCCCC---cEEEe--cCC---CCCHHHHHHHHHcCC
Confidence 567888888876 44443 221 123344555544444
No 111
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=40.00 E-value=97 Score=29.43 Aligned_cols=60 Identities=12% Similarity=0.042 Sum_probs=45.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCC
Q psy13745 11 RILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGV 90 (406)
Q Consensus 11 G~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI 90 (406)
|.++.++- .+-+.|+.++.++++.+++.+..-+.|. ...+|.++++++-+.++++||
T Consensus 3 g~~~~~~~------~~~~~~~~~~~~G~~~vel~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~~gl 59 (273)
T smart00518 3 GAHVSAAG------GLYKAFIEAVDIGARSFQLFLGNPRSWK-----------------GVRLSEETAEKFKEALKENNI 59 (273)
T ss_pred eEEEcccC------cHhHHHHHHHHcCCCEEEEECCCCCCCC-----------------CCCCCHHHHHHHHHHHHHcCC
Confidence 66666653 2557899999999999999875433221 124799999999999999999
Q ss_pred eec
Q psy13745 91 HVI 93 (406)
Q Consensus 91 ~vi 93 (406)
+|.
T Consensus 60 ~ls 62 (273)
T smart00518 60 DVS 62 (273)
T ss_pred CEE
Confidence 864
No 112
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=39.82 E-value=35 Score=34.31 Aligned_cols=64 Identities=13% Similarity=0.102 Sum_probs=39.5
Q ss_pred HHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCc---c-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 30 IDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA---Y-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 30 id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga---~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
...+...+.++.++-+.++.+|.+++....+....+. + .| +..||.+++++|++.|+++++-||
T Consensus 130 ~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii 202 (388)
T PRK07366 130 AGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLAQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLV 202 (388)
T ss_pred HHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEE
Confidence 3444556777777777545567554432211110000 1 12 467999999999999999998666
No 113
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=39.62 E-value=27 Score=35.69 Aligned_cols=35 Identities=29% Similarity=0.508 Sum_probs=27.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeecc-cc----cCCccchh
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHVIP-EL----DAPAHVGE 104 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~viP-Ei----d~PGH~~a 104 (406)
+..+|++|++.|.+.|+++||.||- || =+.||...
T Consensus 172 Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~ 211 (388)
T COG1168 172 GRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHI 211 (388)
T ss_pred CccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCcc
Confidence 4689999999999999999999986 34 33465543
No 114
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=39.58 E-value=29 Score=35.00 Aligned_cols=61 Identities=8% Similarity=0.133 Sum_probs=36.8
Q ss_pred HHhCCCcEEEEEEeeCCCcccccCcCCCc-cc--cCcc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 33 MAVNKLNYFHWHITDSQSFPFESRKYPTL-TQ--SGAY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 33 ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~--~ga~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
....+.++..+-+.++.||.+......+. .+ +..+ .| +..||++++++|++.|+++++-||
T Consensus 133 ~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 202 (393)
T TIGR03538 133 ALLAGAEPYFLNCTAENGFLPDFDAVPESVWRRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIA 202 (393)
T ss_pred HHhcCCeEEEeeccccCCCCCCHHHHHHHHhhcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEE
Confidence 44556666666665455675543222111 00 0001 12 468999999999999999998766
No 115
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.78 E-value=48 Score=31.08 Aligned_cols=83 Identities=12% Similarity=0.235 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCccc--c-cCcCCCccccCccCCCCCCCHHHHH-----------------H
Q psy13745 21 YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPF--E-SRKYPTLTQSGAYSSEKIYSREDIR-----------------E 80 (406)
Q Consensus 21 ~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~--e-~~~~P~l~~~ga~~~~~~YT~~ei~-----------------~ 80 (406)
.+.+...++++.+...++..+-+=++..++... + .+.||++. .|+ +...|.+|.+ +
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~-IGA---GTVl~~~~a~~a~~aGA~FivsP~~~~~ 99 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEAL-IGA---GTVLNPEQLAQAIEAGAQFIVSPGLTPP 99 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCE-EEE---eeccCHHHHHHHHHcCCCEEECCCCCHH
Confidence 478899999999999999999999887765542 1 13577643 444 3444555443 7
Q ss_pred HHHHHHhcCCeecccccCCccchhhhc
Q psy13745 81 IVHYGLVRGVHVIPELDAPAHVGEGWN 107 (406)
Q Consensus 81 lv~yA~~rgI~viPEid~PGH~~a~~~ 107 (406)
++++|+++||.++|.+-+|.=...++.
T Consensus 100 vi~~a~~~~i~~iPG~~TptEi~~a~~ 126 (212)
T PRK05718 100 LLKAAQEGPIPLIPGVSTPSELMLGME 126 (212)
T ss_pred HHHHHHHcCCCEeCCCCCHHHHHHHHH
Confidence 889999999999999999976555443
No 116
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.67 E-value=57 Score=30.87 Aligned_cols=83 Identities=16% Similarity=0.188 Sum_probs=63.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcc-cc-----c-CcCCCccccCccCCCCCCCHHHHH--------------
Q psy13745 21 YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFP-FE-----S-RKYPTLTQSGAYSSEKIYSREDIR-------------- 79 (406)
Q Consensus 21 ~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r-~e-----~-~~~P~l~~~ga~~~~~~YT~~ei~-------------- 79 (406)
.+.+...++++.|..-++..+-+-++..++.. |+ . +++|++. .|+ +..+|.+|++
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~-vGa---GTVl~~e~a~~a~~aGA~FiVsP~ 99 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMI-LGV---GSIVDAATAALYIQLGANFIVTPL 99 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeE-Eee---EeCcCHHHHHHHHHcCCCEEECCC
Confidence 47888999999999999999999887665543 11 1 4567664 454 4566666664
Q ss_pred ---HHHHHHHhcCCeecccccCCccchhhhc
Q psy13745 80 ---EIVHYGLVRGVHVIPELDAPAHVGEGWN 107 (406)
Q Consensus 80 ---~lv~yA~~rgI~viPEid~PGH~~a~~~ 107 (406)
+|+++|+++||-+||=+=||.-...++.
T Consensus 100 ~~~~v~~~~~~~~i~~iPG~~TpsEi~~A~~ 130 (222)
T PRK07114 100 FNPDIAKVCNRRKVPYSPGCGSLSEIGYAEE 130 (222)
T ss_pred CCHHHHHHHHHcCCCEeCCCCCHHHHHHHHH
Confidence 6889999999999999999988777664
No 117
>PRK07681 aspartate aminotransferase; Provisional
Probab=38.43 E-value=40 Score=34.13 Aligned_cols=64 Identities=9% Similarity=0.170 Sum_probs=40.6
Q ss_pred HHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCc--------cCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 30 IDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA--------YSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 30 id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga--------~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
...+...+..+..+.+.++.+|.+......+.-..+. -.| +..+|++++++|++.|+++++-||
T Consensus 131 ~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI 203 (399)
T PRK07681 131 ETGIQMAGATSYYMPLKKENDFLPDLELIPEEIADKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVV 203 (399)
T ss_pred HHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhccccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 3445566777777777545567655443321100000 112 467999999999999999999776
No 118
>PLN02231 alanine transaminase
Probab=38.34 E-value=44 Score=35.82 Aligned_cols=65 Identities=14% Similarity=0.281 Sum_probs=41.3
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCc-cc---cC----c------cCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTL-TQ---SG----A------YSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~---~g----a------~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+...+..++.......+..+.+|.+.+...-+. .. .| + ..| +..||++++++|++.|+++|+-||
T Consensus 229 y~~~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI 308 (534)
T PLN02231 229 YSASIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLL 308 (534)
T ss_pred HHHHHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 344556677777777776556776654432111 00 00 0 012 458999999999999999998666
No 119
>PRK09265 aminotransferase AlaT; Validated
Probab=38.08 E-value=44 Score=33.87 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=38.9
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCc--------cCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA--------YSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga--------~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+...+...+.+.+.+.+.++.+|.+......+...... -.+ +..++.+++++|++.|+++|+-||
T Consensus 132 ~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii 205 (404)
T PRK09265 132 WTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSKITPRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIF 205 (404)
T ss_pred hHHHHHHcCCEEEEEecccccCCCCCHHHHHHhccccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEE
Confidence 33444556778777655334466655433221111000 012 346999999999999999998766
No 120
>cd07201 cPLA2_Grp-IVB-IVD-IVE-IVF Group IVB, IVD, IVE, and IVF cytosolic phospholipase A2; catalytic domain; Ca-dependent. Group IVB, IVD, IVE, and IVF cPLA2 consists of two domains: the regulatory C2 domain and alpha/beta hydrolase PLA2 domain. Group IVB, IVD, IVE, and IVF cPLA2 are also referred to as cPLA2-beta, -delta, -epsilon, and -zeta respectively. cPLA2-beta is approximately 30% identical to cPLA2-alpha and it shows low enzymatic activity compared to cPLA2alpha. cPLA2-beta hydrolyzes palmitic acid from 1-[14C]palmitoyl-2-arachidonoyl-PC and arachidonic acid from 1-palmitoyl-2[14C]arachidonoyl-PC, but not from 1-O-alkyl-2[3H]arachidonoyl-PC. cPLA2-delta, -epsilon, and -zeta are approximately 45-50% identical to cPLA2-beta and 31-37% identical to cPLA2-alpha. It's possible that cPLA2-beta, -delta, -epsilon, and -zeta may have arisen by gene duplication from an ancestral gene. The catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bon
Probab=38.05 E-value=50 Score=35.35 Aligned_cols=53 Identities=21% Similarity=0.390 Sum_probs=38.5
Q ss_pred EEEEeeCCCcccccCcCCCccccCc---------cCCCCCCCHHHHHHHHHHHHhcCCeecccccCC
Q psy13745 42 HWHITDSQSFPFESRKYPTLTQSGA---------YSSEKIYSREDIREIVHYGLVRGVHVIPELDAP 99 (406)
Q Consensus 42 h~Hl~D~q~~r~e~~~~P~l~~~ga---------~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~P 99 (406)
|+||.|. |+-+.++-+|-|. .|- |+.+ . .-+.++..-.||++|||- .|.|+..
T Consensus 372 ~l~lvDa-g~~~N~p~ppllr-P~R~VDlIisfd~Sa~-~-~~~~L~~~~~y~~~~gIp-fPk~~~~ 433 (541)
T cd07201 372 HLCLVDT-AFFINTSYPPLLR-PERKVDVILSLNYSLG-S-QFEPLKQASEYCSEQGIP-FPKIELS 433 (541)
T ss_pred ceeeeec-ccccCCCCCcccC-CCCcccEEEEeccccC-C-cchHHHHHHHHHHHcCCC-CCCCCCC
Confidence 5889886 8888888777763 221 2222 2 778899999999999997 6766644
No 121
>PRK09505 malS alpha-amylase; Reviewed
Probab=37.87 E-value=81 Score=34.97 Aligned_cols=80 Identities=16% Similarity=0.327 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEe-eC-CCcccc--cCcCCCccccCccC-----C-CCCCCHHHHHHHHHHHHhcCCee
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHIT-DS-QSFPFE--SRKYPTLTQSGAYS-----S-EKIYSREDIREIVHYGLVRGVHV 92 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~-D~-q~~r~e--~~~~P~l~~~ga~~-----~-~~~YT~~ei~~lv~yA~~rgI~v 92 (406)
+.-|.+-||.+..+++|.+.+=-. .. .|+.-. .-.+|.-+..|-+. . ..+=|.+|+++||+-|.+|||+|
T Consensus 229 l~Gi~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~Gi~V 308 (683)
T PRK09505 229 LRGLTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQRGIRI 308 (683)
T ss_pred HHHHHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 777888899999999999987421 10 000000 00011111111110 0 12238999999999999999999
Q ss_pred cccccCCccch
Q psy13745 93 IPELDAPAHVG 103 (406)
Q Consensus 93 iPEid~PGH~~ 103 (406)
|-.+ ++-|+.
T Consensus 309 ilD~-V~NH~~ 318 (683)
T PRK09505 309 LFDV-VMNHTG 318 (683)
T ss_pred EEEE-CcCCCc
Confidence 9887 467877
No 122
>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=37.57 E-value=89 Score=31.54 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=42.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcC
Q psy13745 16 TARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRG 89 (406)
Q Consensus 16 ~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rg 89 (406)
.+|..|.++.++++++.++..|+++|---+ -++ -|..+|+..|+++|++-|
T Consensus 234 ~G~~dYdv~kvle~aE~i~~a~idvlIaPv--------~lP---------------G~ND~E~~~iIe~A~~iG 284 (414)
T COG2100 234 AGRKDYDVKKVLEVAEYIANAGIDVLIAPV--------WLP---------------GVNDDEMPKIIEWAREIG 284 (414)
T ss_pred cCccccCHHHHHHHHHHHHhCCCCEEEeee--------ecC---------------CcChHHHHHHHHHHHHhC
Confidence 478899999999999999999999987422 222 268899999999999998
No 123
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=36.99 E-value=69 Score=30.71 Aligned_cols=109 Identities=12% Similarity=0.129 Sum_probs=64.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCe
Q psy13745 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVH 91 (406)
Q Consensus 12 ~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~ 91 (406)
+++|-+ +++..++.+++.|+.| .| .-++ +|+....|.++-+++.++.|+++||.
T Consensus 3 ~v~dkg---l~~~~~~d~Le~~g~y---------ID-------~lKf-------g~Gt~~l~~~~~l~eki~la~~~~V~ 56 (237)
T TIGR03849 3 MVLDKG---LPPKFVEDYLKVCGDY---------IT-------FVKF-------GWGTSALIDRDIVKEKIEMYKDYGIK 56 (237)
T ss_pred eEecCC---CCHHHHHHHHHHhhhh---------ee-------eEEe-------cCceEeeccHHHHHHHHHHHHHcCCe
Confidence 355543 6999999999999854 22 1111 13334567889999999999999999
Q ss_pred ecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHH
Q psy13745 92 VIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYE 153 (406)
Q Consensus 92 viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~ 153 (406)
|.|= .+.-|... .+ .....| +-.|.+ ..--++|-+.+.++...++=..+++.+-+
T Consensus 57 v~~G-Gtl~E~~~-~q-~~~~~Y-l~~~k~---lGf~~IEiS~G~~~i~~~~~~rlI~~~~~ 111 (237)
T TIGR03849 57 VYPG-GTLFEIAH-SK-GKFDEY-LNECDE---LGFEAVEISDGSMEISLEERCNLIERAKD 111 (237)
T ss_pred EeCC-ccHHHHHH-Hh-hhHHHH-HHHHHH---cCCCEEEEcCCccCCCHHHHHHHHHHHHh
Confidence 9887 55544431 22 110001 001321 11123566667777766555566655543
No 124
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=36.55 E-value=46 Score=35.21 Aligned_cols=63 Identities=11% Similarity=0.173 Sum_probs=39.4
Q ss_pred HHHHhCCCcEEEEEEeeCCCcccccCcCCCc-ccc--Ccc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 31 DGMAVNKLNYFHWHITDSQSFPFESRKYPTL-TQS--GAY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 31 d~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~~--ga~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
......+.+..+.-+..+.+|.+.+....+. +.. ..+ .| +..||++++++|++.|+++++-||
T Consensus 247 ~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii 318 (517)
T PRK13355 247 ACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIF 318 (517)
T ss_pred HHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEE
Confidence 3445667777777664445676655433221 110 000 12 457999999999999999998665
No 125
>PRK07683 aminotransferase A; Validated
Probab=36.42 E-value=45 Score=33.63 Aligned_cols=61 Identities=11% Similarity=0.139 Sum_probs=38.1
Q ss_pred HHHhCCCcEEEEEEeeCCCcccccCcCCCc-ccc--Ccc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 32 GMAVNKLNYFHWHITDSQSFPFESRKYPTL-TQS--GAY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 32 ~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~~--ga~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
.+...+.++..+.+ |..||.++...+... +.. ..+ .+ +..+|.+++++|++.|+++|+-||
T Consensus 129 ~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii 198 (387)
T PRK07683 129 IIRLCGAKPVFIDT-RSTGFRLTAEALENAITEKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVL 198 (387)
T ss_pred HHHHcCCEEEEeec-CcccCCCCHHHHHHhcCcCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 34456888877765 446776654222211 110 011 12 356999999999999999998766
No 126
>PRK05764 aspartate aminotransferase; Provisional
Probab=36.40 E-value=52 Score=33.03 Aligned_cols=62 Identities=10% Similarity=0.155 Sum_probs=38.8
Q ss_pred HHHhCCCcEEEEEEeeCCCcccccCcCCCccccCc---c-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 32 GMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA---Y-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 32 ~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga---~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
....++..+..+.+..+.+|.++...+-+.-..+. + .+ +..+|.+++++|++.|+++||-||
T Consensus 131 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii 201 (393)
T PRK05764 131 MVKLAGGVPVFVPTGEENGFKLTVEQLEAAITPKTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVL 201 (393)
T ss_pred HHHHcCCEEEEEecCcccCCcCCHHHHHHhhCccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEE
Confidence 34456777777776545677654433222111010 1 12 456899999999999999998777
No 127
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=36.13 E-value=39 Score=30.76 Aligned_cols=134 Identities=13% Similarity=0.214 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeCCCcc---cccCcCCCccccCcc--------------CCCCCCCHHHHHHHHHH
Q psy13745 22 TLDNIKKTIDGMAVNKLNYFHWHITDSQSFP---FESRKYPTLTQSGAY--------------SSEKIYSREDIREIVHY 84 (406)
Q Consensus 22 ~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r---~e~~~~P~l~~~ga~--------------~~~~~YT~~ei~~lv~y 84 (406)
+.+.++.+++.+...++..+.+.+.+..... .-.+.+|++. .|+= ..+..-+.....+++++
T Consensus 14 ~~~~~~~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~-iGag~v~~~~~~~~a~~~Ga~~i~~p~~~~~~~~~ 92 (190)
T cd00452 14 DAEDALALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEAL-IGAGTVLTPEQADAAIAAGAQFIVSPGLDPEVVKA 92 (190)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCE-EEEEeCCCHHHHHHHHHcCCCEEEcCCCCHHHHHH
Confidence 5788889999999999999999987653221 1113455331 1210 01222233334689999
Q ss_pred HHhcCCeecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhcc-CCC
Q psy13745 85 GLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR-TDL 163 (406)
Q Consensus 85 A~~rgI~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~-~~~ 163 (406)
++.+|+.+||++.+|.+...+++.+. +.+. +.|..+...+ .++.+...|| -+
T Consensus 93 ~~~~~~~~i~gv~t~~e~~~A~~~Ga----d~i~------------------~~p~~~~g~~----~~~~l~~~~~~~p- 145 (190)
T cd00452 93 ANRAGIPLLPGVATPTEIMQALELGA----DIVK------------------LFPAEAVGPA----YIKALKGPFPQVR- 145 (190)
T ss_pred HHHcCCcEECCcCCHHHHHHHHHCCC----CEEE------------------EcCCcccCHH----HHHHHHhhCCCCe-
Confidence 99999999999999988765543211 1111 2333333333 4455566675 45
Q ss_pred CceEEecCCccccccccCChHHHHHHHhcc
Q psy13745 164 SGLFHMGGDEVNMNCWNHTKSITDWMYAKF 193 (406)
Q Consensus 164 ~~~iHiGgDE~~~~~w~~~~~~~~~~~~g~ 193 (406)
.+=+||= +-..+.+|++.|.
T Consensus 146 --~~a~GGI--------~~~n~~~~~~~G~ 165 (190)
T cd00452 146 --FMPTGGV--------SLDNAAEWLAAGV 165 (190)
T ss_pred --EEEeCCC--------CHHHHHHHHHCCC
Confidence 8888872 2345677777754
No 128
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=36.07 E-value=47 Score=33.33 Aligned_cols=61 Identities=8% Similarity=0.078 Sum_probs=37.1
Q ss_pred HHhCCCcEEEEEEeeCCCcccccCcCCCc-ccc-------CccCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 33 MAVNKLNYFHWHITDSQSFPFESRKYPTL-TQS-------GAYSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 33 ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~~-------ga~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
....+.++..+-+.++.||.++...+.+. ... ..-.| +..||.+++++|++.|+++|+.||
T Consensus 132 ~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii 201 (383)
T TIGR03540 132 TLFAGGEPYEMPLKEENGFLPDFDAIPEDIAKKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVC 201 (383)
T ss_pred HHhcCCEEEEEecCcccCCccCHHHHHhhccccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEE
Confidence 34566777766665455675543322111 100 00112 457999999999999999998766
No 129
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=36.03 E-value=33 Score=29.07 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHhcCCeeccc
Q psy13745 74 SREDIREIVHYGLVRGVHVIPE 95 (406)
Q Consensus 74 T~~ei~~lv~yA~~rgI~viPE 95 (406)
|.+|+++++++|+++++.|.+-
T Consensus 9 s~~ev~~~v~~a~~~~~~v~~~ 30 (139)
T PF01565_consen 9 SVEEVQAIVKFANENGVPVRVR 30 (139)
T ss_dssp SHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHHcCCcEEEE
Confidence 8899999999999999998875
No 130
>COG1820 NagA N-acetylglucosamine-6-phosphate deacetylase [Carbohydrate transport and metabolism]
Probab=36.03 E-value=40 Score=34.54 Aligned_cols=67 Identities=22% Similarity=0.376 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhCCC----cEEEEEEeeCCCcccccCcCCCcc--ccCccCCCC--CCCHHHHHHHHHHHH--hcCCe
Q psy13745 22 TLDNIKKTIDGMAVNKL----NYFHWHITDSQSFPFESRKYPTLT--QSGAYSSEK--IYSREDIREIVHYGL--VRGVH 91 (406)
Q Consensus 22 ~~~~ik~~id~ma~~Kl----N~lh~Hl~D~q~~r~e~~~~P~l~--~~ga~~~~~--~YT~~ei~~lv~yA~--~rgI~ 91 (406)
|.+.|++.++.++.+.- +.|=+||+- |-|+ ++||..+.. .-+.+|+.++.+-|+ .+=|+
T Consensus 99 ~~e~i~~al~~~~e~~~~~ga~ilGiHLEG-----------P~ls~~kkGAh~~~~ir~~~~~~~~~~~~~a~g~i~~vT 167 (380)
T COG1820 99 SLEKIKAALRAIREAIAKGGAQILGIHLEG-----------PFLSPEKKGAHNPEYIRPPDPEELEQLIAAADGLIKLVT 167 (380)
T ss_pred CHHHHHHHHHHHHHHHhccCCceEEEEeec-----------CccCHhhccCCCHHHhCCCCHHHHHHHHhhccCceEEEE
Confidence 46777777777666544 789999853 3332 467754332 246777777777666 34478
Q ss_pred eccccc-CC
Q psy13745 92 VIPELD-AP 99 (406)
Q Consensus 92 viPEid-~P 99 (406)
|=||.+ ++
T Consensus 168 lAPE~~~~~ 176 (380)
T COG1820 168 LAPELDGTK 176 (380)
T ss_pred ECCCCCCCH
Confidence 889998 44
No 131
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=35.95 E-value=1.8e+02 Score=30.36 Aligned_cols=24 Identities=13% Similarity=0.419 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+..||++++++|++.|++++|.||
T Consensus 214 G~~~s~e~l~~l~~~~~~~~i~lI 237 (447)
T PLN02607 214 GATVQRSVLEDILDFVVRKNIHLV 237 (447)
T ss_pred CcccCHHHHHHHHHHHHHCCCEEE
Confidence 457999999999999999999776
No 132
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.84 E-value=95 Score=31.41 Aligned_cols=66 Identities=14% Similarity=0.212 Sum_probs=38.8
Q ss_pred ccCCCCcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHH
Q psy13745 3 DIEVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIV 82 (406)
Q Consensus 3 D~P~~~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv 82 (406)
|+|.=+-|.-++-++++| |++.+.+.++..+...-..+. +|+.-.|.++ =|.+++++|.
T Consensus 219 hA~~~e~R~~l~Pi~~~~-~le~ll~al~~~~~~~~r~v~----------ieyvLI~GvN----------Ds~eda~~L~ 277 (342)
T PRK14465 219 NHPDPNGRLQIMDIEEKF-PLEELLQAAKDFTRELKRRIT----------FEYVMIPGVN----------MGRENANKLV 277 (342)
T ss_pred cCCChhhcceEeeccccC-CHHHHHHHHHHHHHHcCCEEE----------EEEEEECCcc----------CCHHHHHHHH
Confidence 455556666666666665 777777777655543222332 2332333333 2778888888
Q ss_pred HHHHhcC
Q psy13745 83 HYGLVRG 89 (406)
Q Consensus 83 ~yA~~rg 89 (406)
++++..+
T Consensus 278 ~ll~~l~ 284 (342)
T PRK14465 278 KIARSLD 284 (342)
T ss_pred HHHhhCC
Confidence 8888754
No 133
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=35.83 E-value=46 Score=32.78 Aligned_cols=65 Identities=11% Similarity=0.191 Sum_probs=38.1
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCcccc--------------CccCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQS--------------GAYSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~--------------ga~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+.+.+...++.+..+.+....+|.+......+.-+. +...| +..+|.+++++|++.|+++|+-||
T Consensus 106 ~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii 185 (363)
T PF00155_consen 106 YIEAARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIII 185 (363)
T ss_dssp HHHHHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEE
T ss_pred ccccccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhccccccee
Confidence 344455666777776665455555544332221000 11223 447899999999999999998877
No 134
>TIGR01866 cas_Csn2 CRISPR-associated protein, Csn2 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas loci. The species range so far for this subtype is animal pathogens and commensals only. This protein is present in some but not all NMENI CRISPR/Cas loci.
Probab=35.57 E-value=91 Score=29.43 Aligned_cols=63 Identities=11% Similarity=0.175 Sum_probs=46.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHh
Q psy13745 8 QSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLV 87 (406)
Q Consensus 8 ~~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~ 87 (406)
..=|+++|+...- +.+.|..+++.......+.+-.-. . -..++|++|+.+|.+|+..
T Consensus 133 Ka~gik~e~~~~~-~~eki~~~lki~~~l~~kki~ifv-----------------N-----l~~YLt~eei~el~~~i~~ 189 (216)
T TIGR01866 133 KALGIKFETQSDT-LLEKCLEILQIFKELTKKKLFIFI-----------------N-----SGAFLTKDELAELQKFISY 189 (216)
T ss_pred HhcCeeeeeccCc-HHHHHHHHHHHHHHHhcCcEEEEE-----------------c-----HHHhCCHHHHHHHHHHHHH
Confidence 3457888887775 778888888887776666554321 1 1357999999999999999
Q ss_pred cCCeec
Q psy13745 88 RGVHVI 93 (406)
Q Consensus 88 rgI~vi 93 (406)
-.+.|+
T Consensus 190 ~~~~vl 195 (216)
T TIGR01866 190 TKLTVL 195 (216)
T ss_pred hcccEE
Confidence 888765
No 135
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=35.20 E-value=40 Score=32.39 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEi 96 (406)
++.+++.|+.++..+.+++.++-. +.. +..... ..--...+-+++++++|+++||+|.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~~~-----~~~---~~~~~~-----~~~~~~~~~l~~l~~~A~~~Gv~l~lE~ 153 (279)
T TIGR00542 93 LEIMEKAIQLARDLGIRTIQLAGY-----DVY---YEEHDE-----ETRRRFREGLKEAVELAARAQVTLAVEI 153 (279)
T ss_pred HHHHHHHHHHHHHhCCCEEEecCc-----ccc---cCcCCH-----HHHHHHHHHHHHHHHHHHHcCCEEEEee
Confidence 346899999999999999876521 110 010000 0012356789999999999999999994
No 136
>PRK09082 methionine aminotransferase; Validated
Probab=35.13 E-value=53 Score=33.08 Aligned_cols=63 Identities=8% Similarity=0.160 Sum_probs=38.7
Q ss_pred HHHHHhCCCcEEEEEEeeCCCcccccCcCCCc-ccc-------CccCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 30 IDGMAVNKLNYFHWHITDSQSFPFESRKYPTL-TQS-------GAYSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 30 id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~~-------ga~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
.+.+...+.++..+-+. .++|.+..+.+.+. ... ....+ +..||.+++++|++.|++++|-||
T Consensus 129 ~~~~~~~g~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li 200 (386)
T PRK09082 129 APAIELAGGRAVRVALQ-PPDFRVDWQRFAAAISPRTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVL 200 (386)
T ss_pred HHHHHHcCCEEEEEecC-cccccCCHHHHHHhcCccceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEE
Confidence 44445567788777763 34566544332211 110 01122 346899999999999999998776
No 137
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=34.86 E-value=45 Score=33.77 Aligned_cols=65 Identities=9% Similarity=-0.011 Sum_probs=40.7
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCc-c---c-cCcc------CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTL-T---Q-SGAY------SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~---~-~ga~------~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+...+...+.++..+-+.|..+|.+..+...+. . . ...+ .| +..+|++++++|++.|+++++-||
T Consensus 133 ~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii 209 (396)
T PRK09257 133 HRAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPF 209 (396)
T ss_pred HHHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEE
Confidence 455666788888887774433344444332211 0 0 0111 12 457999999999999999998765
No 138
>PF09183 DUF1947: Domain of unknown function (DUF1947); InterPro: IPR015266 Members of this entry are a set of hypothetical archaeal proteins. Their exact function has not, as yet, been defined. ; PDB: 1Q7H_A.
Probab=34.59 E-value=25 Score=26.73 Aligned_cols=23 Identities=17% Similarity=0.342 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHHHHh-CCCc
Q psy13745 17 ARNFYTLDNIKKTIDGMAV-NKLN 39 (406)
Q Consensus 17 aR~~~~~~~ik~~id~ma~-~KlN 39 (406)
.|||+|...+|++++.|.. |+++
T Consensus 1 qRH~LSkKe~k~~~~k~~~~ygId 24 (65)
T PF09183_consen 1 QRHFLSKKEIKEIKEKIKEKYGID 24 (65)
T ss_dssp --EE--HHHHHHHHHHHHT-TT--
T ss_pred CcccccHHHHHHHHHHHHHHhCcC
Confidence 4999999999999999998 7765
No 139
>PRK07324 transaminase; Validated
Probab=34.05 E-value=69 Score=32.21 Aligned_cols=65 Identities=14% Similarity=0.150 Sum_probs=39.3
Q ss_pred HHHHHhCCCcEEEEEEeeCCCcccccCcCCCc-ccc------C-ccCC-CCCCCHHHHHHHHHHHHhcCCeecc
Q psy13745 30 IDGMAVNKLNYFHWHITDSQSFPFESRKYPTL-TQS------G-AYSS-EKIYSREDIREIVHYGLVRGVHVIP 94 (406)
Q Consensus 30 id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~~------g-a~~~-~~~YT~~ei~~lv~yA~~rgI~viP 94 (406)
.+....++..+..+-+.++.||.++....-++ +.+ . ...| +..++++++++|++.|+++|+-||-
T Consensus 118 ~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~ 191 (373)
T PRK07324 118 YDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLS 191 (373)
T ss_pred HHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 34455567776666665556776543322111 100 0 0012 4578999999999999999987763
No 140
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=33.99 E-value=2.8e+02 Score=27.49 Aligned_cols=42 Identities=19% Similarity=0.241 Sum_probs=27.2
Q ss_pred cccccCcCCCcccc--CccCCCCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 51 FPFESRKYPTLTQS--GAYSSEKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 51 ~r~e~~~~P~l~~~--ga~~~~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
||+-+.-+|..+-. +.|. .....+++++++-+++++.||+++
T Consensus 65 ~R~sS~l~P~~~h~~~~~w~-~~~~~~~~~~~~g~~~~~~~irls 108 (303)
T PRK02308 65 FRLSSSLIPLATHPELEGWD-YIEPFKEELREIGEFIKEHNIRLS 108 (303)
T ss_pred EEcccCcCCCCCChhhcccC-CCCCCHHHHHHHHHHHHHcCCCee
Confidence 35555555544321 2232 345789999999999999988654
No 141
>PF11080 DUF2622: Protein of unknown function (DUF2622); InterPro: IPR022597 This family is conserved in the Enterobacteriaceae family. The function is not known.
Probab=33.98 E-value=1.2e+02 Score=25.02 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccC
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDA 98 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~ 98 (406)
...+.++=..|...+++. =++|+.|=+-|+.. +.|.--...+++|++++++-.++-..-.-|||++
T Consensus 20 l~d~~~L~~~lt~~GF~~---tl~D~~G~~HeLgt-------ntfgl~S~l~~~eV~~la~~lae~algk~p~V~V 85 (96)
T PF11080_consen 20 LTDINELNNHLTRAGFST---TLTDEDGNPHELGT-------NTFGLISALSAEEVAQLARGLAESALGKTPEVEV 85 (96)
T ss_pred hHHHHHHHHHHHhcCcee---EEecCCCCEeecCC-------CeEEEEecCCHHHHHHHHHHHhhhhcCCCCceEE
Confidence 566777777888877765 57899887766543 3343345689999999999888777766777754
No 142
>PRK08068 transaminase; Reviewed
Probab=32.27 E-value=56 Score=32.89 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+..||++++++|++.|+++++.||
T Consensus 181 G~~~s~~~~~~l~~la~~~~~~ii 204 (389)
T PRK08068 181 GAVATKAFFEETVAFAKKHNIGVV 204 (389)
T ss_pred CCcCCHHHHHHHHHHHHHcCeEEE
Confidence 468999999999999999998766
No 143
>PRK05839 hypothetical protein; Provisional
Probab=32.25 E-value=1.1e+02 Score=30.60 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=41.5
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCc-c-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA-Y-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga-~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+...+...+.++...-+..+.+|.+++... .+.+... + .| +..||.+++++|++.|+++||-||
T Consensus 122 ~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~-~~~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii 192 (374)
T PRK05839 122 YEGAAIASRAKVLLMPLTKENDFTPSLNEK-ELQEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILI 192 (374)
T ss_pred hHHHHHhcCCEEEEeecccccCCcCCcchh-hhccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEE
Confidence 444556678888777765456787665321 1111000 1 12 457999999999999999998776
No 144
>PRK07337 aminotransferase; Validated
Probab=31.87 E-value=65 Score=32.40 Aligned_cols=62 Identities=13% Similarity=0.060 Sum_probs=37.9
Q ss_pred HHHhCCCcEEEEEEeeCCCcccccCcCCCccccCc--------cCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 32 GMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA--------YSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 32 ~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga--------~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
.....+.++..+-+..+.+|.+....+.+.-..+. ..+ +..+|.+|+++|++.|+++|+-||
T Consensus 130 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii 200 (388)
T PRK07337 130 FVAAAEGRPVLVPSGPAERFQLTAADVEAAWGERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTI 200 (388)
T ss_pred HHHHcCCEEEEeecCCccCCcCCHHHHHhhcCccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEE
Confidence 34455667766666434466665543322111000 112 456999999999999999998666
No 145
>PRK08960 hypothetical protein; Provisional
Probab=31.50 E-value=60 Score=32.66 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+..+|.+++++|++.|+++|+-||
T Consensus 179 G~~~~~~~~~~l~~~~~~~~~~li 202 (387)
T PRK08960 179 GTLLSRDELAALSQALRARGGHLV 202 (387)
T ss_pred CcCcCHHHHHHHHHHHHHcCCEEE
Confidence 457999999999999999998765
No 146
>PRK06290 aspartate aminotransferase; Provisional
Probab=30.96 E-value=60 Score=33.25 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=39.1
Q ss_pred HHHHHhCCCcEEEEEEeeCCCcccccCcCCCc-cc--cCcc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 30 IDGMAVNKLNYFHWHITDSQSFPFESRKYPTL-TQ--SGAY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 30 id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l-~~--~ga~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
...+..++.++...-+.++.+|.+.+....+. .. +..| .| +..||.+++++|++.|+++|+-||
T Consensus 144 ~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI 216 (410)
T PRK06290 144 GTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIKEKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVV 216 (410)
T ss_pred HHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhcccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEE
Confidence 34445567777777765555675543322111 00 0001 12 467999999999999999998665
No 147
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=30.64 E-value=47 Score=35.16 Aligned_cols=62 Identities=8% Similarity=0.217 Sum_probs=39.1
Q ss_pred HHH-hCCCcEEEEEEeeCCCcccccCcCCCc---------cccCcc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 32 GMA-VNKLNYFHWHITDSQSFPFESRKYPTL---------TQSGAY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 32 ~ma-~~KlN~lh~Hl~D~q~~r~e~~~~P~l---------~~~ga~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
.+. ..+.+++.+.+..+.+|.+.++.+.+. .-++.+ .| +..||++++++|++.|++++|-||
T Consensus 159 ~~~~~~G~~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI 236 (496)
T PLN02376 159 DLRWRTGVEIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLV 236 (496)
T ss_pred HHHhhCCCEEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 344 478888888885444555544433110 001111 12 468999999999999999999765
No 148
>KOG0462|consensus
Probab=30.01 E-value=35 Score=36.68 Aligned_cols=32 Identities=22% Similarity=0.391 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHHhcCCeec----------------ccccCCccchh
Q psy13745 73 YSREDIREIVHYGLVRGVHVI----------------PELDAPAHVGE 104 (406)
Q Consensus 73 YT~~ei~~lv~yA~~rgI~vi----------------PEid~PGH~~a 104 (406)
--++|+-+=.+.-++|||+|- =-||||||...
T Consensus 91 ~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 91 IGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred CchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 467888888889999999874 45999999984
No 149
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=29.45 E-value=1.8e+02 Score=27.32 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=20.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCeec
Q psy13745 71 KIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 71 ~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
...|.+++.++.+++++.|+.++
T Consensus 223 ~~~~~e~l~~~~~~~~~~g~~~~ 245 (246)
T PRK11145 223 KPPSKETMERVKGILEQYGHKVM 245 (246)
T ss_pred CCCCHHHHHHHHHHHHHcCCccc
Confidence 45799999999999999999874
No 150
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=29.22 E-value=65 Score=32.84 Aligned_cols=65 Identities=8% Similarity=0.109 Sum_probs=38.7
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCc---c-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA---Y-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga---~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+...+..++..+..+.+..+.+|.+..+...+...... + .| +..+|.+++++|++.|+++|+-||
T Consensus 141 ~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii 214 (412)
T PTZ00433 141 YETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDDRTKALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLI 214 (412)
T ss_pred HHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhccCceEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEE
Confidence 34445666777777666444455554433222111000 0 12 346899999999999999998665
No 151
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=29.17 E-value=3.7e+02 Score=29.98 Aligned_cols=116 Identities=19% Similarity=0.232 Sum_probs=64.4
Q ss_pred HHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccC---cc--------CCCCCC--------CHHHHHHHHHHHHhcCC
Q psy13745 30 IDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSG---AY--------SSEKIY--------SREDIREIVHYGLVRGV 90 (406)
Q Consensus 30 id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~g---a~--------~~~~~Y--------T~~ei~~lv~yA~~rgI 90 (406)
|+-+..+++|.+|+--+=+ ....|.|.+.| .| .+.+.| -..|+|++|+-..+.||
T Consensus 206 i~yLk~LGvtaVeLLPV~~------~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHkaGI 279 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFD------FYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKAGI 279 (697)
T ss_pred HHHHHHhCCceEEEecceE------EeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHcCC
Confidence 9999999999988743211 01112221111 11 122323 24599999999999999
Q ss_pred eecccccCCccchhh--------hccccccccccccccCCCcCccccccCCCC-CCCCCChhHHHHHHHHHHHHHh
Q psy13745 91 HVIPELDAPAHVGEG--------WNSIEKQKDELLVCFKKEPWTKFCVEPPCG-QLNPVSDRVYEVLGGLYEEMTD 157 (406)
Q Consensus 91 ~viPEid~PGH~~a~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~t~~f~~~l~~e~~~ 157 (406)
+||-.+ +.-|+... ++......|-.+. .+ +.+.....|+ .|+..+|-+.++|-+-|.=..+
T Consensus 280 ~VILDV-VfNHTae~~~~g~t~~f~~id~~~Yyr~~---~d--g~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~ 349 (697)
T COG1523 280 EVILDV-VFNHTAEGNELGPTLSFRGIDPNYYYRLD---PD--GYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVE 349 (697)
T ss_pred EEEEEE-eccCcccccCcCcccccccCCcCceEEEC---CC--CCeecCCccCcccccCChHHHHHHHHHHHHHHH
Confidence 999887 56677421 0100000010000 00 1122222344 7888899999988887765554
No 152
>PRK09989 hypothetical protein; Provisional
Probab=28.97 E-value=72 Score=30.23 Aligned_cols=80 Identities=16% Similarity=0.062 Sum_probs=48.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhc
Q psy13745 9 SARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVR 88 (406)
Q Consensus 9 ~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~r 88 (406)
.=|+++|+..-+..=..+..+|+.. +=-..|+|+.|..+. ...| .| .=++.++++..++.
T Consensus 172 ~v~l~lD~~h~~~~~~~~~~~i~~~---~~ri~hvHi~D~~~~----------~~pG----~G---~id~~~i~~al~~~ 231 (258)
T PRK09989 172 NVFIQLDTFHAQKVDGNLTHLIRDY---AGKYAHVQIAGLPDR----------HEPD----DG---EINYPWLFRLFDEV 231 (258)
T ss_pred CeEEEeehHhHHHcCCCHHHHHHHh---hhhEEEEEECCCCCC----------CCCC----CC---CcCHHHHHHHHHHc
Confidence 3589999975443312233344332 223569999873211 1112 12 23566788888887
Q ss_pred CCe--ecccccCCccchhhhcc
Q psy13745 89 GVH--VIPELDAPAHVGEGWNS 108 (406)
Q Consensus 89 gI~--viPEid~PGH~~a~~~~ 108 (406)
|.+ |..|.--.||+.+++++
T Consensus 232 Gy~g~is~E~~~~~~~~~~~~~ 253 (258)
T PRK09989 232 GYQGWIGCEYKPRGLTEEGLGW 253 (258)
T ss_pred CCCeEEEEEEeeCCCCHHHHHh
Confidence 774 78888888998887765
No 153
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=28.80 E-value=53 Score=31.63 Aligned_cols=36 Identities=14% Similarity=0.249 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCeecccccCCccchhhh
Q psy13745 71 KIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGW 106 (406)
Q Consensus 71 ~~YT~~ei~~lv~yA~~rgI~viPEid~PGH~~a~~ 106 (406)
..++++++++++++|.+.|++++-|+-...-...++
T Consensus 133 ~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~ 168 (247)
T PRK13957 133 RILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLAL 168 (247)
T ss_pred hhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHH
Confidence 468999999999999999999999997766655443
No 154
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=28.73 E-value=44 Score=28.01 Aligned_cols=51 Identities=18% Similarity=0.215 Sum_probs=35.9
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 14 LDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 14 lD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+|++=-+.|.+.+-.+++.+...+...+.++.. ++-++++++|++.||+|+
T Consensus 56 iDlavv~~~~~~~~~~v~~~~~~g~~~v~~~~g-----------------------------~~~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 56 IDLAVVCVPPDKVPEIVDEAAALGVKAVWLQPG-----------------------------AESEELIEAAREAGIRVI 106 (116)
T ss_dssp -SEEEE-S-HHHHHHHHHHHHHHT-SEEEE-TT-----------------------------S--HHHHHHHHHTT-EEE
T ss_pred CCEEEEEcCHHHHHHHHHHHHHcCCCEEEEEcc-----------------------------hHHHHHHHHHHHcCCEEE
Confidence 566666788999999999999999888877531 445789999999999998
No 155
>PRK01060 endonuclease IV; Provisional
Probab=28.61 E-value=43 Score=32.05 Aligned_cols=40 Identities=18% Similarity=0.198 Sum_probs=26.9
Q ss_pred ceEEEeCCCCCCCH----HHHHHHHHHHHhCCC--cEEEEEEeeCC
Q psy13745 10 ARILLDTARNFYTL----DNIKKTIDGMAVNKL--NYFHWHITDSQ 49 (406)
Q Consensus 10 RG~mlD~aR~~~~~----~~ik~~id~ma~~Kl--N~lh~Hl~D~q 49 (406)
=|+++|++.-+..- +..+.+++.+...-. ...|+|+.|..
T Consensus 174 vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~ 219 (281)
T PRK01060 174 VGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSK 219 (281)
T ss_pred EEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCC
Confidence 49999999766442 344478887765433 56777888864
No 156
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=28.59 E-value=1.4e+02 Score=30.13 Aligned_cols=67 Identities=13% Similarity=0.087 Sum_probs=45.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcC
Q psy13745 10 ARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRG 89 (406)
Q Consensus 10 RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rg 89 (406)
+|+-|=. +-.+.+.-+.+||.|+.+++..+-.-|- .|+= +...-.+=+++|+++|+..|
T Consensus 4 ~GfSifp--~~~~~~~~~~Yi~~~~~~Gf~~IFtsl~-----------~~~~--------~~~~~~~~~~ell~~Anklg 62 (360)
T COG3589 4 LGFSIFP--NRSPKEKDIAYIDRMHKYGFKRIFTSLL-----------IPEE--------DAELYFHRFKELLKEANKLG 62 (360)
T ss_pred eeEEecc--CCCcchhHHHHHHHHHHcCccceeeecc-----------cCCc--------hHHHHHHHHHHHHHHHHhcC
Confidence 4555544 3346778899999999999987654331 1110 11123456899999999999
Q ss_pred Ceeccccc
Q psy13745 90 VHVIPELD 97 (406)
Q Consensus 90 I~viPEid 97 (406)
++||-.|+
T Consensus 63 ~~vivDvn 70 (360)
T COG3589 63 LRVIVDVN 70 (360)
T ss_pred cEEEEEcC
Confidence 99997764
No 157
>COG1313 PflX Uncharacterized Fe-S protein PflX, homolog of pyruvate formate lyase activating proteins [General function prediction only]
Probab=28.44 E-value=1.1e+02 Score=30.43 Aligned_cols=30 Identities=23% Similarity=0.491 Sum_probs=24.8
Q ss_pred cCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecc
Q psy13745 57 KYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIP 94 (406)
Q Consensus 57 ~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viP 94 (406)
.||++. ..+|++|+.+..+||.+.|++-+.
T Consensus 304 eypeI~--------R~lt~eE~e~a~~~a~~~gl~~~~ 333 (335)
T COG1313 304 EYPEIN--------RRLTREEYEKALEYAEKLGLTNIL 333 (335)
T ss_pred hchhhc--------ccCCHHHHHHHHHHHHHcCCceee
Confidence 467765 369999999999999999997653
No 158
>PRK09275 aspartate aminotransferase; Provisional
Probab=28.17 E-value=59 Score=34.88 Aligned_cols=61 Identities=11% Similarity=0.256 Sum_probs=39.0
Q ss_pred HHhCCCcEEEEEEeeCCCcccccCcCCCccccCc---c-----C-CCCCCCHHHHHHHHHHHHhc--CCeec
Q psy13745 33 MAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA---Y-----S-SEKIYSREDIREIVHYGLVR--GVHVI 93 (406)
Q Consensus 33 ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga---~-----~-~~~~YT~~ei~~lv~yA~~r--gI~vi 93 (406)
|+.+++.++.+.+..+.+|.+......++..... + . .+..||++++++|++.|+++ ++-||
T Consensus 209 l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II 280 (527)
T PRK09275 209 LPRYDLEVVHINADEENEWQYPDSELEKLRDPSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMII 280 (527)
T ss_pred HcCCCeEEEEeecCcccCCCCCHHHHHhhcCCCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEE
Confidence 4455777777777556678775544433321111 1 1 24689999999999999654 77665
No 159
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=27.97 E-value=28 Score=36.72 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=17.3
Q ss_pred HHHHhcCCeecc-------------cccCCccchh
Q psy13745 83 HYGLVRGVHVIP-------------ELDAPAHVGE 104 (406)
Q Consensus 83 ~yA~~rgI~viP-------------Eid~PGH~~a 104 (406)
..-++|||+|.- -+|||||+..
T Consensus 47 DlEkERGITILaKnTav~~~~~~INIvDTPGHADF 81 (603)
T COG1217 47 DLEKERGITILAKNTAVNYNGTRINIVDTPGHADF 81 (603)
T ss_pred chhhhcCcEEEeccceeecCCeEEEEecCCCcCCc
Confidence 456789999864 4999999983
No 160
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=27.92 E-value=1.8e+02 Score=30.37 Aligned_cols=80 Identities=14% Similarity=0.239 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeCCC---cccccCcCCCccccCccCCCCCCCHHHHHHHHHHHH-hcCCeeccccc
Q psy13745 22 TLDNIKKTIDGMAVNKLNYFHWHITDSQS---FPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGL-VRGVHVIPELD 97 (406)
Q Consensus 22 ~~~~ik~~id~ma~~KlN~lh~Hl~D~q~---~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~-~rgI~viPEid 97 (406)
|.+...+.++..+..++|.+|+----.-| =++.+...=++.. .-+.++.-++.++++++|.-+. +.||-.|-+|
T Consensus 20 ~~~~W~~~l~~~~~~GYNmIHftPlq~~G~S~S~YSI~Dql~~~~-~~~~~~~~~~~~~v~~~v~~~~~~~~ll~~~Dv- 97 (423)
T PF14701_consen 20 PFSDWEKHLKVISEKGYNMIHFTPLQERGESNSPYSIYDQLKFDP-DFFPPGKESTFEDVKEFVKEAEKKYGLLSMTDV- 97 (423)
T ss_pred CHhHHHHHHHHHHHcCCcEEEecccccCCCCCCCccccchhhcCh-hhcCCCccccHHHHHHHHHHHHHHcCceEEEEE-
Confidence 36778888999999999999974211111 0111111000000 0011234578899999999985 7999888776
Q ss_pred CCccch
Q psy13745 98 APAHVG 103 (406)
Q Consensus 98 ~PGH~~ 103 (406)
+.-|+.
T Consensus 98 V~NHtA 103 (423)
T PF14701_consen 98 VLNHTA 103 (423)
T ss_pred eeccCc
Confidence 334443
No 161
>PRK02227 hypothetical protein; Provisional
Probab=27.41 E-value=82 Score=30.20 Aligned_cols=31 Identities=16% Similarity=0.159 Sum_probs=26.5
Q ss_pred CcceEEEeCCCC-------CCCHHHHHHHHHHHHhCCC
Q psy13745 8 QSARILLDTARN-------FYTLDNIKKTIDGMAVNKL 38 (406)
Q Consensus 8 ~~RG~mlD~aR~-------~~~~~~ik~~id~ma~~Kl 38 (406)
.+.|+||||+-+ |++.+.|.++++....+++
T Consensus 144 Gf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl 181 (238)
T PRK02227 144 GFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHGL 181 (238)
T ss_pred CCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHccc
Confidence 467999999865 6899999999999887765
No 162
>PLN02672 methionine S-methyltransferase
Probab=27.36 E-value=81 Score=36.86 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=44.2
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCcc-c---c-----Cc-cCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLT-Q---S-----GA-YSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~-~---~-----ga-~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+...+..++.++..+-+.++.||.+..+.+.+.- . + .. ..| +..||++++++|++.|+++|+.||
T Consensus 791 Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VI 866 (1082)
T PLN02672 791 YVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVI 866 (1082)
T ss_pred HHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEE
Confidence 4445667888998888865678987653332221 1 0 01 122 357999999999999999998776
No 163
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=27.36 E-value=97 Score=30.86 Aligned_cols=70 Identities=11% Similarity=0.175 Sum_probs=42.8
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccCCc
Q psy13745 21 YTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAPA 100 (406)
Q Consensus 21 ~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~PG 100 (406)
+|.+...+.|+.|...++|++..++ -|.+--+. .|.|.-. -..||+.+++.|++.|+-||--+----
T Consensus 21 ~p~~~W~~~l~k~ka~G~n~v~~yv----~W~~he~~------~g~~df~---g~~dl~~f~~~a~~~gl~vilrpGpyi 87 (319)
T PF01301_consen 21 IPPEYWRDRLQKMKAAGLNTVSTYV----PWNLHEPE------EGQFDFT---GNRDLDRFLDLAQENGLYVILRPGPYI 87 (319)
T ss_dssp S-GGGHHHHHHHHHHTT-SEEEEE------HHHHSSB------TTB---S---GGG-HHHHHHHHHHTT-EEEEEEES--
T ss_pred CChhHHHHHHHHHHhCCcceEEEec----cccccCCC------CCccccc---chhhHHHHHHHHHHcCcEEEeccccee
Confidence 4688899999999999999999987 34332221 2333211 147999999999999999886543333
Q ss_pred cch
Q psy13745 101 HVG 103 (406)
Q Consensus 101 H~~ 103 (406)
|++
T Consensus 88 ~aE 90 (319)
T PF01301_consen 88 CAE 90 (319)
T ss_dssp -TT
T ss_pred ccc
Confidence 443
No 164
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=27.18 E-value=1.4e+02 Score=30.38 Aligned_cols=24 Identities=17% Similarity=0.457 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+..||.+++++|++.|+++++-||
T Consensus 190 G~~~s~~~~~~l~~~a~~~~~~iI 213 (409)
T PRK07590 190 GTVLTKEQLKAWVDYAKENGSLIL 213 (409)
T ss_pred CCcCCHHHHHHHHHHHHHcCeEEE
Confidence 468999999999999999998665
No 165
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=27.09 E-value=1.7e+02 Score=29.04 Aligned_cols=65 Identities=8% Similarity=0.090 Sum_probs=40.8
Q ss_pred HHHHHHhCCCcEEEEEEeeCCCcccccCcCCCcccc------C-ccCC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 29 TIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQS------G-AYSS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 29 ~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~------g-a~~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+...+...+.++..+-+.++.+|.++......+... . .-.| +..++++++++|++.|+++|+-||
T Consensus 107 ~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii 179 (356)
T PRK08056 107 YRRALQQVGCEIRRYSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALI 179 (356)
T ss_pred HHHHHHHcCCeEEEEecccccCCCccHHHHHhccCCCCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEE
Confidence 445566778888887776556776642111111110 0 0012 457899999999999999998776
No 166
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=26.30 E-value=64 Score=32.26 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=29.6
Q ss_pred CCccccCc-cCCCCCCCHHHHHHHHHHHHhcCCeeccc
Q psy13745 59 PTLTQSGA-YSSEKIYSREDIREIVHYGLVRGVHVIPE 95 (406)
Q Consensus 59 P~l~~~ga-~~~~~~YT~~ei~~lv~yA~~rgI~viPE 95 (406)
|...+.|. |++++.-+..++++|.++|+..||+|++-
T Consensus 157 Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~ 194 (322)
T COG2984 157 PNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEA 194 (322)
T ss_pred CCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEE
Confidence 44444544 46677789999999999999999999975
No 167
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=26.06 E-value=52 Score=33.22 Aligned_cols=23 Identities=13% Similarity=0.317 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCee
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHV 92 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~v 92 (406)
+..||.+||++|.++|+++||-+
T Consensus 144 GtVy~l~el~~i~~~~k~~~l~L 166 (342)
T COG2008 144 GTVYPLDELEAISAVCKEHGLPL 166 (342)
T ss_pred ceecCHHHHHHHHHHHHHhCCce
Confidence 46899999999999999999844
No 168
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=26.05 E-value=1e+02 Score=25.15 Aligned_cols=57 Identities=19% Similarity=0.308 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcC--Ceec
Q psy13745 18 RNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRG--VHVI 93 (406)
Q Consensus 18 R~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rg--I~vi 93 (406)
....+.+.+.+.|+.++.......++.++-. -|.| ....+++.++++++++++ +.|.
T Consensus 26 ~~~~~~~~~~~~i~~~~~~~~~~~~v~~~GG---------EPll----------~~~~~~l~~~i~~~~~~~~~~~i~ 84 (119)
T PF13394_consen 26 GEEMSIEELEEIIDELKEKGFRPSTVVFTGG---------EPLL----------YLNPEDLIELIEYLKERGPEIKIR 84 (119)
T ss_dssp GGS--HHHHHHHHHHHHHTT----EEEEESS---------SGGG----------STTHHHHHHHHCTSTT-----EEE
T ss_pred CCcccHhHHHHHHHHHHhcCCceEEEEEECC---------CCcc----------ccCHHHHHHHHHHHHhhCCCceEE
Confidence 3457889999999999999988778877642 2433 146789999999999999 5554
No 169
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=25.71 E-value=1.6e+02 Score=28.54 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeeccccc
Q psy13745 18 RNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELD 97 (406)
Q Consensus 18 R~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid 97 (406)
++.++.+.++++++.++..+...+. ++.. +..-..++.+|+++++++|+.-| .|.
T Consensus 37 ~~~ls~eei~~~i~~~~~~gi~~I~--~tGG----------------------EPll~~~l~~iv~~l~~~g~~~v-~i~ 91 (302)
T TIGR02668 37 GNELSPEEIERIVRVASEFGVRKVK--ITGG----------------------EPLLRKDLIEIIRRIKDYGIKDV-SMT 91 (302)
T ss_pred cCcCCHHHHHHHHHHHHHcCCCEEE--EECc----------------------ccccccCHHHHHHHHHhCCCceE-EEE
Confidence 4579999999999999888776544 3431 22334568899999999987221 344
Q ss_pred CCcc
Q psy13745 98 APAH 101 (406)
Q Consensus 98 ~PGH 101 (406)
|-|.
T Consensus 92 TNG~ 95 (302)
T TIGR02668 92 TNGI 95 (302)
T ss_pred cCch
Confidence 5453
No 170
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=25.53 E-value=84 Score=27.91 Aligned_cols=33 Identities=15% Similarity=0.186 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCc
Q psy13745 22 TLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRK 57 (406)
Q Consensus 22 ~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~ 57 (406)
.++.||++|+.|...+++.|.+. ..+|+|.+.+
T Consensus 2 d~~~I~~Li~~~~~s~l~ele~~---~~~~~i~l~k 34 (155)
T PRK06302 2 DIRKIKKLIELVDESGISEFEIK---EGEESVRISR 34 (155)
T ss_pred CHHHHHHHHHHHHHCCCeEEEEE---cCCEEEEEEe
Confidence 46789999999999999999984 3478888854
No 171
>KOG0258|consensus
Probab=25.26 E-value=2.7e+02 Score=28.88 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeecc
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHVIP 94 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~viP 94 (406)
+..+|.+-|++|+.+|++.|+-++.
T Consensus 229 Gqvls~e~ie~i~~fa~~~~l~lla 253 (475)
T KOG0258|consen 229 GQVLSEENIEGIICFAAEEGLVLLA 253 (475)
T ss_pred chhhcHHHHHHHHHHHHHcCeEEec
Confidence 4689999999999999999997664
No 172
>TIGR02635 RhaI_grampos L-rhamnose isomerase, Streptomyces subtype. This clade of sequences is closely related to the L-rhamnose isomerases found in Pseudomonas stutzeri and in a number of the Rhizobiales (TIGR02629). The genes of the family represented here are found in similar genomic contexts which contain genes apparently involved in rhamnose catabolism such as rhamnulose-1-phosphate aldolase (TIGR02632), sugar kinases, and sugar transporters.
Probab=25.26 E-value=85 Score=32.19 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=26.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEee
Q psy13745 11 RILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITD 47 (406)
Q Consensus 11 G~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D 47 (406)
|+|||++.+ .+-+.|-.++..+...+ -.+|+|++|
T Consensus 207 ~v~lD~GH~-~~~Enia~~~a~l~~~~-kL~hiH~nd 241 (378)
T TIGR02635 207 LVLVDTGHH-AQGTNIEFIVATLLDEK-KLGGFHFNS 241 (378)
T ss_pred eEEeecCcc-CCCCCHHHHHHHHhhCC-ceeEEEecC
Confidence 999999986 56677777666666544 588999976
No 173
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=24.99 E-value=2.4e+02 Score=27.19 Aligned_cols=21 Identities=24% Similarity=0.474 Sum_probs=13.9
Q ss_pred CCHHHHHHHHHHHHhcCCeec
Q psy13745 73 YSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 73 YT~~ei~~lv~yA~~rgI~vi 93 (406)
+|.+|.++|.++|++.|+.|+
T Consensus 102 ~~~e~~~~l~~aA~~~g~~v~ 122 (266)
T TIGR00036 102 FSEEDKQELADLAEKAGIAAV 122 (266)
T ss_pred CCHHHHHHHHHHHhcCCccEE
Confidence 467777777777777665443
No 174
>KOG0464|consensus
Probab=24.96 E-value=50 Score=34.33 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCCee-------------cccccCCccchh
Q psy13745 75 REDIREIVHYGLVRGVHV-------------IPELDAPAHVGE 104 (406)
Q Consensus 75 ~~ei~~lv~yA~~rgI~v-------------iPEid~PGH~~a 104 (406)
-+-+.++.+.-++|||+| |--||+|||...
T Consensus 73 gdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvdf 115 (753)
T KOG0464|consen 73 GDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVDF 115 (753)
T ss_pred CchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcceE
Confidence 345678888899999998 567999999874
No 175
>TIGR00190 thiC thiamine biosynthesis protein ThiC. The thiC ortholog is designated thiA in Bacillus subtilis.
Probab=24.93 E-value=53 Score=33.87 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEE
Q psy13745 20 FYTLDNIKKTIDGMAVNKLNYFHWHI 45 (406)
Q Consensus 20 ~~~~~~ik~~id~ma~~KlN~lh~Hl 45 (406)
.++.+.+.+.|..=+.-++..+=+|-
T Consensus 136 ~mt~d~~~~~ie~qa~dGVDfmTiH~ 161 (423)
T TIGR00190 136 DMDEDDMFRAIEKQAKDGVDFMTIHA 161 (423)
T ss_pred hCCHHHHHHHHHHHHHhCCCEEEEcc
Confidence 36778888888888899998888885
No 176
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=24.68 E-value=3.2e+02 Score=26.45 Aligned_cols=24 Identities=13% Similarity=0.034 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHhcCCeecccccC
Q psy13745 75 REDIREIVHYGLVRGVHVIPELDA 98 (406)
Q Consensus 75 ~~ei~~lv~yA~~rgI~viPEid~ 98 (406)
-+.+++.+++|+++|++|..-+.+
T Consensus 117 ~~~~~~~i~~ak~~G~~v~~~i~~ 140 (275)
T cd07937 117 VRNLEVAIKAVKKAGKHVEGAICY 140 (275)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEEe
Confidence 578999999999999999876653
No 177
>PRK07550 hypothetical protein; Provisional
Probab=24.66 E-value=91 Score=31.28 Aligned_cols=62 Identities=10% Similarity=0.115 Sum_probs=36.7
Q ss_pred HHHhCCCcEEEEEEeeCCCcccccCcCCCcccc---Ccc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 32 GMAVNKLNYFHWHITDSQSFPFESRKYPTLTQS---GAY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 32 ~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~---ga~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
.+...++.+....+.++.||.+....+.++-.. ..+ .| +..++.+++++|++.|+++|+.||
T Consensus 130 ~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI 200 (386)
T PRK07550 130 WLDMLGIRPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVTPNNPTGVVYPPELLHELYDLARRHGIALI 200 (386)
T ss_pred HHHhcCCEEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCeEEE
Confidence 334567777777664345665443221111000 000 12 346899999999999999998765
No 178
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=24.66 E-value=94 Score=31.41 Aligned_cols=24 Identities=21% Similarity=0.421 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+..+|.+++++|++.|+++|+-||
T Consensus 182 G~~~~~~~~~~l~~~a~~~~~~ii 205 (401)
T TIGR01264 182 GSVFSRQHLEEILAVAERQCLPII 205 (401)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEE
Confidence 457899999999999999998765
No 179
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=24.57 E-value=2.7e+02 Score=26.28 Aligned_cols=85 Identities=20% Similarity=0.191 Sum_probs=48.6
Q ss_pred CcceEEEeCCCCCCC------HHHHHHHHHHHHh-CCC-cEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHH
Q psy13745 8 QSARILLDTARNFYT------LDNIKKTIDGMAV-NKL-NYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIR 79 (406)
Q Consensus 8 ~~RG~mlD~aR~~~~------~~~ik~~id~ma~-~Kl-N~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~ 79 (406)
+.=|+++|++.-+.. .+.+..+|+.+.. .+. -..|+|+.|+.+-. .....--+ ..| .|..--+.+-
T Consensus 166 ~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~~-g~~~d~H~-~~G----~G~id~~~~~ 239 (273)
T smart00518 166 DRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIEL-GSGKDRHE-NLG----EGYIGFEPFR 239 (273)
T ss_pred CCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCcc-CCCCcccc-CCC----CCCCChHHHH
Confidence 456999999975533 4457777776653 222 46677787864321 00000001 112 3555556666
Q ss_pred HHHHHHHhcCCeecccccC
Q psy13745 80 EIVHYGLVRGVHVIPELDA 98 (406)
Q Consensus 80 ~lv~yA~~rgI~viPEid~ 98 (406)
.++...+-.|+.+|-|.-.
T Consensus 240 ~~l~~~~~~~~~~~lE~~~ 258 (273)
T smart00518 240 LLMADKRFDGIPLILETPP 258 (273)
T ss_pred HHhhChhhcCCcEEEeCCC
Confidence 6666666677777777665
No 180
>KOG3257|consensus
Probab=24.24 E-value=47 Score=29.71 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCeecccc
Q psy13745 78 IREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 78 i~~lv~yA~~rgI~viPEi 96 (406)
.|-|+--|+..||.|+|||
T Consensus 141 ~rsiigtA~smGIkVvp~i 159 (168)
T KOG3257|consen 141 CRSIIGTARSMGIKVVPPI 159 (168)
T ss_pred HHHHHHHHHhCccccchhH
Confidence 4667888999999999964
No 181
>PLN02951 Molybderin biosynthesis protein CNX2
Probab=24.06 E-value=2.3e+02 Score=28.79 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhc-CCeecccc
Q psy13745 18 RNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVR-GVHVIPEL 96 (406)
Q Consensus 18 R~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~r-gI~viPEi 96 (406)
...++.+.|+++++.++..++..+.+ +- ++..-+.++.+|++++++. |+..| .|
T Consensus 87 ~~~ls~eei~~~i~~~~~~Gv~~I~~--tG----------------------GEPllr~dl~eli~~l~~~~gi~~i-~i 141 (373)
T PLN02951 87 SHLLSQDEIVRLAGLFVAAGVDKIRL--TG----------------------GEPTLRKDIEDICLQLSSLKGLKTL-AM 141 (373)
T ss_pred cccCCHHHHHHHHHHHHHCCCCEEEE--EC----------------------CCCcchhhHHHHHHHHHhcCCCceE-EE
Confidence 35689999999999999888776543 31 1233345799999999986 76422 34
Q ss_pred cCCccc
Q psy13745 97 DAPAHV 102 (406)
Q Consensus 97 d~PGH~ 102 (406)
.|-|..
T Consensus 142 tTNG~l 147 (373)
T PLN02951 142 TTNGIT 147 (373)
T ss_pred eeCcch
Confidence 555543
No 182
>PF10141 ssDNA-exonuc_C: Single-strand DNA-specific exonuclease, C terminal domain; InterPro: IPR018779 This entry represents a domain found at the C terminus of a set of single-stranded DNA-specific exonucleases, including RecJ. Its function has not, as yet, been determined.
Probab=24.06 E-value=5.6e+02 Score=23.41 Aligned_cols=122 Identities=13% Similarity=0.133 Sum_probs=76.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCC
Q psy13745 11 RILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGV 90 (406)
Q Consensus 11 G~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI 90 (406)
-+++|+=. +++.+++++ ...+...+++++....+-.+ .+.=|+++++.+=++-+.+
T Consensus 55 lVl~D~P~---~~~~l~~~l---~~~~~~~Iyl~f~~~~~~y~----------------~~~P~Re~F~~~Y~~l~~~-- 110 (195)
T PF10141_consen 55 LVLLDLPP---SLEQLKELL---QQQQPERIYLLFYQQDSAYF----------------EGMPTREQFKKLYKFLKQH-- 110 (195)
T ss_pred EEEEeCCC---CHHHHHHHH---HhCCcceEEEEECCccchhh----------------cCCCCHHHHHHHHHHHHhC--
Confidence 35677732 367777776 48889999999854322111 1233999999999999887
Q ss_pred eecccccCCccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhhccCCCCceEEec
Q psy13745 91 HVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMG 170 (406)
Q Consensus 91 ~viPEid~PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~f~~~~~~~iHiG 170 (406)
|++|...|..++-+ .+. -++++..|+-+|+-|+-=+--.+ -+-..
T Consensus 111 ---~~~~l~~~~~~La~----------------------------~l~-i~~~~l~fml~VF~EL~FVti~~---g~i~~ 155 (195)
T PF10141_consen 111 ---PNFDLKEQLQALAK----------------------------YLG-ISPDTLKFMLKVFFELGFVTIED---GVISL 155 (195)
T ss_pred ---CCCCHHHHHHHHHH----------------------------HHC-cCHHHHHHHHHHHHHcCcEEEeC---CEEEe
Confidence 78888888765311 112 26889999999999975111111 12223
Q ss_pred CCccccccccCChHHHHHHHh
Q psy13745 171 GDEVNMNCWNHTKSITDWMYA 191 (406)
Q Consensus 171 gDE~~~~~w~~~~~~~~~~~~ 191 (406)
-+...+..-++++..|++..+
T Consensus 156 ~~~p~k~~L~~S~~Yq~~~~~ 176 (195)
T PF10141_consen 156 NPNPEKRDLTESPTYQERQQQ 176 (195)
T ss_pred CCCCCCcChhhhHHHHHHHHH
Confidence 334444455667777666544
No 183
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=24.01 E-value=63 Score=25.07 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCeeccc
Q psy13745 71 KIYSREDIREIVHYGLVRGVHVIPE 95 (406)
Q Consensus 71 ~~YT~~ei~~lv~yA~~rgI~viPE 95 (406)
.-+...=++..++||+++|..|+|.
T Consensus 37 qGia~~L~~~~l~~a~~~~~kv~p~ 61 (78)
T PF14542_consen 37 QGIAKKLVEAALDYARENGLKVVPT 61 (78)
T ss_dssp TTHHHHHHHHHHHHHHHTT-EEEET
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEEE
Confidence 3478899999999999999999985
No 184
>PRK08363 alanine aminotransferase; Validated
Probab=23.99 E-value=1.1e+02 Score=30.93 Aligned_cols=62 Identities=8% Similarity=0.103 Sum_probs=36.8
Q ss_pred HHHhCCCcEEEEEEeeCCCcccccCcCCCccccC---cc-----CC-CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 32 GMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSG---AY-----SS-EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 32 ~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~g---a~-----~~-~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
....++...+..-..|.+||.+....+.+..... .+ .+ +..++.+++++|++.|+++|+-||
T Consensus 133 ~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li 203 (398)
T PRK08363 133 LVKFYGGVPVEYRTIEEEGWQPDIDDIRKKITEKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVI 203 (398)
T ss_pred HHHHcCCEEEEeccccccCCcCCHHHHHhhCCcceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEE
Confidence 3344566666653345567765544322111100 01 12 346899999999999999998665
No 185
>cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown.
Probab=23.79 E-value=3.2e+02 Score=26.69 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeeccccc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELD 97 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid 97 (406)
.+.+++.++.+...+.+.+-+.++...+.+- .......+|.++++++++.|+++|+.|.-...
T Consensus 119 ~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~------------~~~~~~~~~~e~l~~~~~~A~~~g~~v~~H~~ 181 (342)
T cd01299 119 VEEVRAAVREQLRRGADQIKIMATGGVLSPG------------DPPPDTQFSEEELRAIVDEAHKAGLYVAAHAY 181 (342)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeccCCcCCCC------------CCCcccCcCHHHHHHHHHHHHHcCCEEEEEeC
Confidence 6778999999999999999988754221110 01123468999999999999999998775544
No 186
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=23.73 E-value=66 Score=30.86 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=18.1
Q ss_pred CCCHHHHHHHHHHHHhcCCeec
Q psy13745 72 IYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 72 ~YT~~ei~~lv~yA~~rgI~vi 93 (406)
.+|.++.++|.+||+++||..+
T Consensus 52 el~~e~~~~L~~~~~~~gi~f~ 73 (241)
T PF03102_consen 52 ELSEEQHKELFEYCKELGIDFF 73 (241)
T ss_dssp SS-HHHHHHHHHHHHHTT-EEE
T ss_pred cCCHHHHHHHHHHHHHcCCEEE
Confidence 5899999999999999999654
No 187
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.71 E-value=1.1e+02 Score=29.15 Aligned_cols=61 Identities=11% Similarity=0.095 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEi 96 (406)
++.+++.|+..+.++..++-++ |++... . +.. . . .-....+.+++|.++|++.||+|.-|-
T Consensus 98 ~~~~~~~i~~a~~lG~~~i~~~-----~~~~~~-~-~~~-~-~----~~~~~~~~l~~l~~~A~~~GV~i~iE~ 158 (283)
T PRK13209 98 LEIMRKAIQLAQDLGIRVIQLA-----GYDVYY-E-QAN-N-E----TRRRFIDGLKESVELASRASVTLAFEI 158 (283)
T ss_pred HHHHHHHHHHHHHcCCCEEEEC-----Cccccc-c-ccH-H-H----HHHHHHHHHHHHHHHHHHhCCEEEEee
Confidence 4568899999999999988764 221100 0 000 0 0 001246788999999999999999986
No 188
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=22.66 E-value=1.2e+02 Score=29.41 Aligned_cols=55 Identities=18% Similarity=0.195 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccCC
Q psy13745 20 FYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAP 99 (406)
Q Consensus 20 ~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~P 99 (406)
.+|.+.+++-|..|...++|.+=.|- +|. + .++.+.|.+.||-|+.|+...
T Consensus 32 a~~~~~~~~d~~l~k~~G~N~iR~~h------------~p~-------------~----~~~~~~cD~~GilV~~e~~~~ 82 (298)
T PF02836_consen 32 AMPDEAMERDLELMKEMGFNAIRTHH------------YPP-------------S----PRFYDLCDELGILVWQEIPLE 82 (298)
T ss_dssp ---HHHHHHHHHHHHHTT-SEEEETT------------S---------------S----HHHHHHHHHHT-EEEEE-S-B
T ss_pred cCCHHHHHHHHHHHHhcCcceEEccc------------ccC-------------c----HHHHHHHhhcCCEEEEecccc
Confidence 36889999999999999999987641 221 1 467889999999999999887
Q ss_pred ccch
Q psy13745 100 AHVG 103 (406)
Q Consensus 100 GH~~ 103 (406)
+|..
T Consensus 83 ~~~~ 86 (298)
T PF02836_consen 83 GHGS 86 (298)
T ss_dssp SCTS
T ss_pred ccCc
Confidence 7754
No 189
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=22.54 E-value=1.1e+02 Score=29.21 Aligned_cols=31 Identities=16% Similarity=0.251 Sum_probs=25.9
Q ss_pred CcceEEEeCCCC-------CCCHHHHHHHHHHHHhCCC
Q psy13745 8 QSARILLDTARN-------FYTLDNIKKTIDGMAVNKL 38 (406)
Q Consensus 8 ~~RG~mlD~aR~-------~~~~~~ik~~id~ma~~Kl 38 (406)
..-|+||||+-+ |++.+.|.++++....+++
T Consensus 144 G~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL 181 (235)
T PF04476_consen 144 GFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGL 181 (235)
T ss_pred CCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccc
Confidence 467999999865 6899999999999887665
No 190
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=22.48 E-value=87 Score=25.38 Aligned_cols=33 Identities=18% Similarity=0.011 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHHhcCCeecccccCCccchh
Q psy13745 72 IYSREDIREIVHYGLVRGVHVIPELDAPAHVGE 104 (406)
Q Consensus 72 ~YT~~ei~~lv~yA~~rgI~viPEid~PGH~~a 104 (406)
.-|.+++.++.+..+++||++.+....|||..+
T Consensus 70 v~~~~~v~~~~~~l~~~G~~~~~~~~~~~~~~~ 102 (121)
T cd09013 70 ASSPEALERRVAALEASGLGIGWIEGDPGHGKA 102 (121)
T ss_pred cCCHHHHHHHHHHHHHcCCccccccCCCCCcce
Confidence 358999999999999999998665556666554
No 191
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.36 E-value=2.2e+02 Score=26.98 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccccCCccc
Q psy13745 25 NIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELDAPAHV 102 (406)
Q Consensus 25 ~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid~PGH~ 102 (406)
.+.+.|+.++.+++..+-+.+.+.. ..+. ..-++.+++++|.+.++++||+|. .+-+++|.
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~---------~~~~-------~~~~~~~~~~~l~~~l~~~Gl~i~-~~~~~~~~ 77 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESD---------ERLA-------RLDWSKEERLSLVKAIYETGVRIP-SMCLSGHR 77 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcc---------cccc-------cccCCHHHHHHHHHHHHHcCCCce-EEeccccc
Confidence 6788999999999999998754310 1111 123688999999999999999876 34444544
No 192
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=22.20 E-value=1.1e+03 Score=26.22 Aligned_cols=151 Identities=14% Similarity=0.232 Sum_probs=85.7
Q ss_pred CCHHHHHHHHHHHHhCCCcEEEE-EEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeeccccc-C
Q psy13745 21 YTLDNIKKTIDGMAVNKLNYFHW-HITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPELD-A 98 (406)
Q Consensus 21 ~~~~~ik~~id~ma~~KlN~lh~-Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEid-~ 98 (406)
+|-+.+++=|+.|-..++|++-. .+ +|..-- |+. |.| -+|.-|.. +++.|.+-||.||---. +
T Consensus 27 ~p~~~w~ddl~~mk~~G~N~V~ig~f----aW~~~e---P~e---G~f----df~~~D~~-~l~~a~~~Gl~vil~t~P~ 91 (673)
T COG1874 27 WPRETWMDDLRKMKALGLNTVRIGYF----AWNLHE---PEE---GKF----DFTWLDEI-FLERAYKAGLYVILRTGPT 91 (673)
T ss_pred CCHHHHHHHHHHHHHhCCCeeEeeeE----EeeccC---ccc---ccc----CcccchHH-HHHHHHhcCceEEEecCCC
Confidence 45688999999999999998877 55 443222 222 332 13444444 79999999999996653 3
Q ss_pred CccchhhhccccccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHhh-ccC-CCCceEEecCCcccc
Q psy13745 99 PAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDL-FRT-DLSGLFHMGGDEVNM 176 (406)
Q Consensus 99 PGH~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~~-f~~-~~~~~iHiGgDE~~~ 176 (406)
.++.. |... .+|++--.+.. ......+.-..+|++++--++.+..|++.+.+- ... ..-..+|+-- |+..
T Consensus 92 g~~P~--Wl~~---~~PeiL~~~~~--~~~~~~g~r~~~~~~~~~Yr~~~~~i~~~irer~~~~~~~v~~w~~dn-eY~~ 163 (673)
T COG1874 92 GAPPA--WLAK---KYPEILAVDEN--GRVRSDGARENICPVSPVYREYLDRILQQIRERLYGNGPAVITWQNDN-EYGG 163 (673)
T ss_pred CCCch--HHhc---CChhheEecCC--CcccCCCcccccccccHHHHHHHHHHHHHHHHHHhccCCceeEEEccC-ccCC
Confidence 44444 3211 12322111110 000011122357898886677888888778776 321 1112566654 6654
Q ss_pred -cccc-CChHH-HHHHHhccc
Q psy13745 177 -NCWN-HTKSI-TDWMYAKFG 194 (406)
Q Consensus 177 -~~w~-~~~~~-~~~~~~g~~ 194 (406)
.||- .|+.. +.|++++++
T Consensus 164 ~~~~~~~~~~~f~~wLk~~yg 184 (673)
T COG1874 164 HPCYCDYCQAAFRLWLKKGYG 184 (673)
T ss_pred ccccccccHHHHHHHHHhCcc
Confidence 5662 34443 347777764
No 193
>cd06808 PLPDE_III Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes. The fold type III PLP-dependent enzyme family is predominantly composed of two-domain proteins with similarity to bacterial alanine racemases (AR) including eukaryotic ornithine decarboxylases (ODC), prokaryotic diaminopimelate decarboxylases (DapDC), biosynthetic arginine decarboxylases (ADC), carboxynorspermidine decarboxylases (CANSDC), and similar proteins. AR-like proteins contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. These proteins play important roles in the biosynthesis of amino acids and polyamine. The family also includes the single-domain YBL036c-like proteins, which contain a single PLP-binding TIM-barrel domain without any N- or C-terminal extensions. Due to the lack of a second domain, these p
Probab=22.18 E-value=2.8e+02 Score=24.82 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=25.3
Q ss_pred eEEEeCC---CCC-CCHHHHHHHHHHHHhC---CCcEEEEEEe
Q psy13745 11 RILLDTA---RNF-YTLDNIKKTIDGMAVN---KLNYFHWHIT 46 (406)
Q Consensus 11 G~mlD~a---R~~-~~~~~ik~~id~ma~~---KlN~lh~Hl~ 46 (406)
++.+|++ .+| ++.+.+.++++.++.. ++.-||.|+.
T Consensus 110 ~lrv~~g~~~~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~~H~~ 152 (211)
T cd06808 110 LLRIDTGDENGKFGVRPEELKALLERAKELPHLRLVGLHTHFG 152 (211)
T ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 7888886 233 6778888888877665 4445888874
No 194
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=22.01 E-value=2.2e+02 Score=28.59 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCCCCC-CHHHHHHHHHHHHhCCCcE--EEEEEeeCCCcccccCcCCC--ccccCccC--------CCCCCCHHHHHHHH
Q psy13745 16 TARNFY-TLDNIKKTIDGMAVNKLNY--FHWHITDSQSFPFESRKYPT--LTQSGAYS--------SEKIYSREDIREIV 82 (406)
Q Consensus 16 ~aR~~~-~~~~ik~~id~ma~~KlN~--lh~Hl~D~q~~r~e~~~~P~--l~~~ga~~--------~~~~YT~~ei~~lv 82 (406)
++-|+- +++.-|++||..+..+-.. ||.+..|.. -.+..+. ......|. ..-.++.+++++|.
T Consensus 7 ig~NH~Gdl~~A~~lI~~A~~aGadaVKfQt~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~ 82 (329)
T TIGR03569 7 AGVNHNGSLELAKKLVDAAAEAGADAVKFQTFKAEDL----VSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELK 82 (329)
T ss_pred eCCCccCcHHHHHHHHHHHHHhCCCEEEeeeCCHHHh----hCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHH
Confidence 344443 6899999999999998874 444433321 1111111 00000111 12358999999999
Q ss_pred HHHHhcCCeecccccCCccch
Q psy13745 83 HYGLVRGVHVIPELDAPAHVG 103 (406)
Q Consensus 83 ~yA~~rgI~viPEid~PGH~~ 103 (406)
+||++.||.++-+.=-..+..
T Consensus 83 ~~~~~~Gi~~~stpfd~~svd 103 (329)
T TIGR03569 83 EYCESKGIEFLSTPFDLESAD 103 (329)
T ss_pred HHHHHhCCcEEEEeCCHHHHH
Confidence 999999999887765544444
No 195
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=21.94 E-value=88 Score=29.49 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=25.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCCc
Q psy13745 9 SARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSF 51 (406)
Q Consensus 9 ~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~ 51 (406)
.=|++||++.-++.-......|..+.. -..|+|+.|..+-
T Consensus 171 ~v~~~lD~~H~~~~~~d~~~~~~~~~~---rI~hvH~kD~~~~ 210 (274)
T COG1082 171 NVGLLLDTGHAFFAGEDPLEAIRKLGD---RIGHVHLKDADGP 210 (274)
T ss_pred ceEEEEecCchhhccCCHHHHHHHhhc---ceeEEEEeecCcc
Confidence 348999999988762233333333333 6778888887543
No 196
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=21.76 E-value=1.2e+02 Score=30.85 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+..++.+++++|++.|+++|+-||
T Consensus 183 G~~~~~~~~~~i~~~a~~~~~~ii 206 (403)
T TIGR01265 183 GSVFSRDHLQKIAEVARKLGIPII 206 (403)
T ss_pred CCCCCHHHHHHHHHHHHHCCCEEE
Confidence 457899999999999999998765
No 197
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=21.70 E-value=5.7e+02 Score=29.76 Aligned_cols=124 Identities=13% Similarity=0.178 Sum_probs=67.4
Q ss_pred CCCCHHHHHHHHHHHHhCCCcEEEEEEeeC--CCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccc
Q psy13745 19 NFYTLDNIKKTIDGMAVNKLNYFHWHITDS--QSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 19 ~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~--q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEi 96 (406)
.|.+-+.++++++.+...++-.=-+|+-.+ .+|+ .++ |.. ..| -+.+++++.-+++|+.+|+-|
T Consensus 196 ~Y~sq~eV~eva~~fre~~IP~DvIwlDidYm~g~~-------~FT----wD~-~rF--PdP~~mv~~Lh~~G~kvv~ii 261 (978)
T PLN02763 196 SYESAKRVAEIARTFREKKIPCDVVWMDIDYMDGFR-------CFT----FDK-ERF--PDPKGLADDLHSIGFKAIWML 261 (978)
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEEEEehhhhcCCC-------cee----ECc-ccC--CCHHHHHHHHHHCCCEEEEEE
Confidence 356788999999999999997544444322 1222 111 111 122 256899999999999999988
Q ss_pred cCCccchh-hhcccc--ccccccccccCCCcCccccccCCCCCCCCCChhHHHHHHHHHHHHHh
Q psy13745 97 DAPAHVGE-GWNSIE--KQKDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTD 157 (406)
Q Consensus 97 d~PGH~~a-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~f~~~l~~e~~~ 157 (406)
| ||=... ....+. ....-.+.-.+..++...+-...+.-.|-+||++.++-.++++++.+
T Consensus 262 d-PgI~~d~gY~~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d 324 (978)
T PLN02763 262 D-PGIKAEEGYFVYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVS 324 (978)
T ss_pred c-CCCccCCCCHHHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhc
Confidence 6 432210 000000 00000000111122211111112334688999999999999888765
No 198
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.62 E-value=1e+02 Score=31.22 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHhcCCeecccccCCccchh
Q psy13745 71 KIYSREDIREIVHYGLVRGVHVIPELDAPAHVGE 104 (406)
Q Consensus 71 ~~YT~~ei~~lv~yA~~rgI~viPEid~PGH~~a 104 (406)
.-+|.+|++++++||.++|.++.=-+++.-|...
T Consensus 44 ~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~ 77 (347)
T COG0826 44 LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDE 77 (347)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEEeccccccch
Confidence 4589999999999999999999999999988875
No 199
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=21.59 E-value=75 Score=30.42 Aligned_cols=60 Identities=13% Similarity=0.178 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEi 96 (406)
++.+++.|+.++..+.+.+-+|.... +..... ..-....+-+++|+++|+..||+|.-|-
T Consensus 84 ~~~~~~~i~~A~~lG~~~v~~~~g~~----------~~~~~~----~~~~~~~~~l~~l~~~a~~~gi~l~lEn 143 (279)
T cd00019 84 IERLKDEIERCEELGIRLLVFHPGSY----------LGQSKE----EGLKRVIEALNELIDKAETKGVVIALET 143 (279)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCC----------CCCCHH----HHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 44566666666666666655543210 000000 0012345778999999999999999875
No 200
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=21.27 E-value=72 Score=32.82 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=23.1
Q ss_pred CHHHHHHHHHHHHhcCCeecccccCCccc
Q psy13745 74 SREDIREIVHYGLVRGVHVIPELDAPAHV 102 (406)
Q Consensus 74 T~~ei~~lv~yA~~rgI~viPEid~PGH~ 102 (406)
|.+|+.+++++|++++|.|+|- .-||.
T Consensus 6 s~eev~~iv~~a~~~~i~v~~~--G~Gt~ 32 (413)
T TIGR00387 6 NTEQVARILKLCHEHRIPIVPR--GAGTG 32 (413)
T ss_pred CHHHHHHHHHHHHHcCCcEEEE--CCCCC
Confidence 8999999999999999999993 33554
No 201
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.26 E-value=1.4e+02 Score=31.26 Aligned_cols=24 Identities=21% Similarity=0.216 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHhc--CCeecc
Q psy13745 71 KIYSREDIREIVHYGLVR--GVHVIP 94 (406)
Q Consensus 71 ~~YT~~ei~~lv~yA~~r--gI~viP 94 (406)
..||.+++.++++.+++. ||.|-.
T Consensus 288 R~~t~e~~~~~v~~ir~~~pgi~i~~ 313 (455)
T PRK14335 288 RSYTREHYLSLVGKLKASIPNVALST 313 (455)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 459999999999999998 665443
No 202
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=21.17 E-value=2.2e+02 Score=32.66 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCeecccccCCccchh
Q psy13745 76 EDIREIVHYGLVRGVHVIPELDAPAHVGE 104 (406)
Q Consensus 76 ~ei~~lv~yA~~rgI~viPEid~PGH~~a 104 (406)
+|+|++|+-|.++||+||-.+ ++-|+..
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDV-VyNHt~~ 431 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDV-VYNHTNA 431 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEe-ecccccc
Confidence 699999999999999999876 5677764
No 203
>PRK05942 aspartate aminotransferase; Provisional
Probab=20.91 E-value=85 Score=31.70 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCeec
Q psy13745 70 EKIYSREDIREIVHYGLVRGVHVI 93 (406)
Q Consensus 70 ~~~YT~~ei~~lv~yA~~rgI~vi 93 (406)
+..+|++++++|++.|+++|+.||
T Consensus 184 G~~~s~~~~~~i~~~a~~~~~~iI 207 (394)
T PRK05942 184 TATAPREFFEEIVAFARKYEIMLV 207 (394)
T ss_pred CCcCCHHHHHHHHHHHHHcCeEEE
Confidence 457999999999999999999776
No 204
>COG3049 Penicillin V acylase and related amidases [Cell envelope biogenesis, outer membrane]
Probab=20.89 E-value=79 Score=31.91 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHH-------HHhCCC--cEEEEEEeeCCCccccc
Q psy13745 19 NFYTLDNIKKTIDG-------MAVNKL--NYFHWHITDSQSFPFES 55 (406)
Q Consensus 19 ~~~~~~~ik~~id~-------ma~~Kl--N~lh~Hl~D~q~~r~e~ 55 (406)
+|-+++.+|+.|+. +...|. +-||++++|..|=.+.+
T Consensus 132 n~atVeEvk~~i~~~~~v~v~~~~~~~~~~plH~s~sDasG~S~ii 177 (353)
T COG3049 132 NFATVEEVKQAIDKIPFVIVALNDPGEGVAPLHYSLSDASGDSAII 177 (353)
T ss_pred hcccHHHHHHHHhcCCeEEEeccCCCCCCCceeEEEEcCCCCeEEE
Confidence 45578888888887 555664 89999999987765554
No 205
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=20.78 E-value=76 Score=32.59 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHhcCCeeccccc
Q psy13745 72 IYSREDIREIVHYGLVRGVHVIPELD 97 (406)
Q Consensus 72 ~YT~~ei~~lv~yA~~rgI~viPEid 97 (406)
.-|.+|+.+++++|.++||.|+|-=-
T Consensus 38 p~s~~eV~~iv~~a~~~~~~v~prG~ 63 (459)
T COG0277 38 PKSEEEVAAILRLANENGIPVVPRGG 63 (459)
T ss_pred cCCHHHHHHHHHHHHHcCCeEEEECC
Confidence 35899999999999999999998643
No 206
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=20.76 E-value=93 Score=29.57 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=27.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHHHHhCCCcEEEEEEeeCCC
Q psy13745 9 SARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQS 50 (406)
Q Consensus 9 ~RG~mlD~aR~~~~~~~ik~~id~ma~~KlN~lh~Hl~D~q~ 50 (406)
.-|+.+|++.-+..-+.+.+.|+.+ +=...|+|+.|..+
T Consensus 175 ~v~~~~D~~h~~~~~~~~~~~i~~~---~~rI~~vHi~D~~~ 213 (275)
T PRK09856 175 RLFSMVDICAPYVQAEPVMSYFDKL---GDKLRHLHIVDSDG 213 (275)
T ss_pred cceeEEeecchhcCCCCHHHHHHHh---CCcEEEEEEEcCCC
Confidence 4589999987666555555556554 44589999999764
No 207
>PRK04296 thymidine kinase; Provisional
Probab=20.58 E-value=91 Score=28.31 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCeeccc
Q psy13745 71 KIYSREDIREIVHYGLVRGVHVIPE 95 (406)
Q Consensus 71 ~~YT~~ei~~lv~yA~~rgI~viPE 95 (406)
++++.+|+.++++.++..|++||--
T Consensus 88 q~l~~~~v~~l~~~l~~~g~~vi~t 112 (190)
T PRK04296 88 QFLDKEQVVQLAEVLDDLGIPVICY 112 (190)
T ss_pred ccCCHHHHHHHHHHHHHcCCeEEEE
Confidence 6789999999999999999998864
No 208
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=20.50 E-value=1.4e+02 Score=28.40 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCcCCCccccCccCCCCCCCHHHHHHHHHHHHhcCCeecccc
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDIREIVHYGLVRGVHVIPEL 96 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~~P~l~~~ga~~~~~~YT~~ei~~lv~yA~~rgI~viPEi 96 (406)
++.+++.|+..+.++.+.+-++ |++.- ..+. .+. .-.-..+.+++|.++|++.||+|.-|-
T Consensus 93 ~~~~~~~i~~a~~lG~~~v~~~-----~~~~~--~~~~-~~~-----~~~~~~~~l~~l~~~a~~~gv~l~lE~ 153 (284)
T PRK13210 93 LEIMKKAIRLAQDLGIRTIQLA-----GYDVY--YEEK-SEE-----TRQRFIEGLAWAVEQAAAAQVMLAVEI 153 (284)
T ss_pred HHHHHHHHHHHHHhCCCEEEEC-----Ccccc--cccc-cHH-----HHHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 4668999999999999999764 22100 0000 000 001234679999999999999999886
No 209
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=20.37 E-value=2e+02 Score=27.74 Aligned_cols=26 Identities=15% Similarity=0.256 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHhcCCeeccccc
Q psy13745 72 IYSREDIREIVHYGLVRGVHVIPELD 97 (406)
Q Consensus 72 ~YT~~ei~~lv~yA~~rgI~viPEid 97 (406)
..+.++..++++.|+++|..|+||+-
T Consensus 109 ~l~~~~r~~~I~~~~~~Gf~v~~EvG 134 (244)
T PF02679_consen 109 DLPEEERLRLIRKAKEEGFKVLSEVG 134 (244)
T ss_dssp ---HHHHHHHHHHHCCTTSEEEEEES
T ss_pred eCCHHHHHHHHHHHHHCCCEEeeccc
Confidence 47899999999999999999999985
No 210
>PRK14455 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.25 E-value=2.1e+02 Score=28.94 Aligned_cols=14 Identities=14% Similarity=-0.024 Sum_probs=6.5
Q ss_pred CHHHHHHHHHHHHh
Q psy13745 74 SREDIREIVHYGLV 87 (406)
Q Consensus 74 T~~ei~~lv~yA~~ 87 (406)
|.+|+++|+++++.
T Consensus 276 s~ed~~~La~ll~~ 289 (356)
T PRK14455 276 QVEHAEELADLLKG 289 (356)
T ss_pred CHHHHHHHHHHHhc
Confidence 44444444444443
No 211
>KOG2550|consensus
Probab=20.22 E-value=1.8e+02 Score=30.30 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEEeeCCCc---cccc-----CcCCCccccCccCCCCCCCHH------------------
Q psy13745 23 LDNIKKTIDGMAVNKLNYFHWHITDSQSF---PFES-----RKYPTLTQSGAYSSEKIYSRE------------------ 76 (406)
Q Consensus 23 ~~~ik~~id~ma~~KlN~lh~Hl~D~q~~---r~e~-----~~~P~l~~~ga~~~~~~YT~~------------------ 76 (406)
-+.=|.-++.+...++|++-+--+ ||- -+|. ++||+|.-+|. ...|.+
T Consensus 249 re~dK~rl~ll~~aGvdvviLDSS--qGnS~~qiemik~iK~~yP~l~ViaG----NVVT~~qa~nLI~aGaDgLrVGMG 322 (503)
T KOG2550|consen 249 RDDDKERLDLLVQAGVDVVILDSS--QGNSIYQLEMIKYIKETYPDLQIIAG----NVVTKEQAANLIAAGADGLRVGMG 322 (503)
T ss_pred ccchhHHHHHhhhcCCcEEEEecC--CCcchhHHHHHHHHHhhCCCceeecc----ceeeHHHHHHHHHccCceeEeccc
Confidence 345578899999999999987654 443 2332 57899875442 222222
Q ss_pred -------------------HHHHHHHHHHhcCCeeccc--ccCCccchhhhcc
Q psy13745 77 -------------------DIREIVHYGLVRGVHVIPE--LDAPAHVGEGWNS 108 (406)
Q Consensus 77 -------------------ei~~lv~yA~~rgI~viPE--id~PGH~~a~~~~ 108 (406)
.+-++.+||..+||-||-. |..+||.-.++..
T Consensus 323 sGSiCiTqevma~GrpQ~TAVy~va~~A~q~gvpviADGGiq~~Ghi~KAl~l 375 (503)
T KOG2550|consen 323 SGSICITQKVMACGRPQGTAVYKVAEFANQFGVPCIADGGIQNVGHVVKALGL 375 (503)
T ss_pred cCceeeeceeeeccCCcccchhhHHHHHHhcCCceeecCCcCccchhHhhhhc
Confidence 3456778999999999987 8899998866653
No 212
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=20.06 E-value=1.2e+02 Score=26.92 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHHhCCCcEEEEEEeeCCCcccccCc
Q psy13745 22 TLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRK 57 (406)
Q Consensus 22 ~~~~ik~~id~ma~~KlN~lh~Hl~D~q~~r~e~~~ 57 (406)
.++.||++|+.|....++.|.+-. .+|+|.+.+
T Consensus 2 d~~~Ik~Li~~~~~s~l~elei~~---~~~~l~l~k 34 (156)
T TIGR00531 2 NIREIKELIKLIEESGITELELKE---EEFEVRLSK 34 (156)
T ss_pred CHHHHHHHHHHHHHCCCcEEEEEe---CCEEEEEEe
Confidence 468899999999999999999854 367887754
Done!