RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13745
(406 letters)
>3ozo_A N-acetylglucosaminidase; beta-N-acetyl-D-hexosaminidase,
hydrolase-hydrolase inhibito; HET: NGT; 2.00A {Ostrinia
furnacalis} PDB: 3nsn_A* 3nsm_A* 3ozp_A* 3s6t_A*
Length = 572
Score = 267 bits (685), Expect = 1e-84
Identities = 102/178 (57%), Positives = 131/178 (73%), Gaps = 7/178 (3%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
ILLDTARN+Y++++IK+TI+ MA KLN FHWHITDSQSFPF + K P L + GA S +K
Sbjct: 192 ILLDTARNYYSIESIKRTIEAMAAVKLNTFHWHITDSQSFPFVTTKRPNLYKFGALSPQK 251
Query: 72 IYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVE 131
+Y++ IRE+V +GL RGV V+PE DAPAHVGEGW Q +L VCFK EPW +CVE
Sbjct: 252 VYTKAAIREVVRFGLERGVRVLPEFDAPAHVGEGW-----QDTDLTVCFKAEPWKSYCVE 306
Query: 132 PPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDWM 189
PPCGQLNP D +Y+ L +Y +M ++F T +FHMGGDEV+ CWN + SI ++M
Sbjct: 307 PPCGQLNPTKDELYQYLEDIYSDMAEVFDTT--DIFHMGGDEVSEACWNSSDSIQNFM 362
Score = 156 bits (397), Expect = 7e-43
Identities = 81/134 (60%), Positives = 99/134 (73%), Gaps = 12/134 (8%)
Query: 184 SITDWMYA--KFGAWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMG 241
S D +Y +GAWVG GNNWCSPYIGWQKVYDN P + E + ++G
Sbjct: 447 SNYDALYFDCGYGAWVGAGNNWCSPYIGWQKVYDNSPAVI----------ALEHRDQVLG 496
Query: 242 QEAALWSEQADAATLDGRLWPRASAMAERLWSNPASNWRAAEYRFLHQRERLVEIGLAAE 301
EAALWSEQ+D +TLDGRLWPRA+A+AERLW+ PA++W+ AEYR LH RERLV +G+ AE
Sbjct: 497 GEAALWSEQSDTSTLDGRLWPRAAALAERLWAEPATSWQDAEYRMLHIRERLVRMGIQAE 556
Query: 302 SIEPEWCYQNEGLC 315
S++PEWCYQNEG C
Sbjct: 557 SLQPEWCYQNEGYC 570
Score = 64.1 bits (156), Expect = 3e-11
Identities = 31/51 (60%), Positives = 36/51 (70%)
Query: 356 QVNATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
+VNATITAN+FFG HG ETLSQL V+D ++M V I D PVYPYR
Sbjct: 140 RVNATITANSFFGMRHGLETLSQLFVFDDIRDHLLMVRDVNISDKPVYPYR 190
>1now_A Beta-hexosaminidase beta chain; (beta/alpha)8-barrel, homodimer,
family 20 glycosidase, HYDR; HET: NAG IFG; 2.20A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 1nou_A* 1np0_A*
2gjx_B* 3lmy_A* 1o7a_A* 2gk1_B*
Length = 507
Score = 245 bits (628), Expect = 8e-77
Identities = 61/178 (34%), Positives = 94/178 (52%), Gaps = 11/178 (6%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
IL+DT+R++ + I KT+D MA NK N HWHI D QSFP++S +P L+ G+YS
Sbjct: 156 ILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSH 215
Query: 72 IYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVE 131
+Y+ D+R ++ Y +RG+ V+PE D P H +LL +++
Sbjct: 216 VYTPNDVRMVIEYARLRGIRVLPEFDTPGHTLSWGKGQ----KDLLTP----CYSRQNKL 267
Query: 132 PPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDWM 189
G +NP + Y L ++E++++F H+GGDEV CW I D+M
Sbjct: 268 DSFGPINPTLNTTYSFLTTFFKEISEVFP---DQFIHLGGDEVEFKCWESNPKIQDFM 322
Score = 124 bits (313), Expect = 2e-31
Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 9/111 (8%)
Query: 202 NWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQADAATLDGRLW 261
+ S W+K Y +P L+ + K L +G EA LW E DA L RLW
Sbjct: 403 DLISYGQDWRKYYKVEP--------LDFGGTQKQKQLFIGGEACLWGEYVDATNLTPRLW 454
Query: 262 PRASAMAERLWSNPAS-NWRAAEYRFLHQRERLVEIGLAAESIEPEWCYQN 311
PRASA+ ERLWS+ + A R R R+VE G+AA+ + +C
Sbjct: 455 PRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYCNHE 505
Score = 58.6 bits (142), Expect = 1e-09
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 359 ATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
A + AN +G G ET SQL+ D Y + I D P + +R
Sbjct: 109 AVLKANRVWGALRGLETFSQLVYQDSYGTFTINE--STIIDSPRFSHR 154
>3gh5_A HEX1, beta-hexosaminidase; beta-N-acetylhexosaminidase,
glycosphingolipids, paenibacill GH20, hydrolase,
structural genomics, NPPSFA; HET: NAG; 1.60A
{Paenibacillus SP} PDB: 3gh4_A* 3gh7_A*
Length = 525
Score = 238 bits (608), Expect = 1e-73
Identities = 74/355 (20%), Positives = 125/355 (35%), Gaps = 92/355 (25%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
++LD AR+F+T+D +K+ ID + K+N FH H++D Q + E + +P L + G+
Sbjct: 187 LMLDVARHFFTVDEVKRQIDLASQYKINKFHMHLSDDQGWRIEIKSWPDLIEIGSKGQVG 246
Query: 72 -----IYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWT 126
Y++E ++IV Y R + VIPE+D P H S + L K
Sbjct: 247 GGPGGYYTQEQFKDIVSYAAERYIEVIPEIDMPGHTNAALASYGE-----LNPDGKRKAM 301
Query: 127 KFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGG--------------- 171
+ L P ++ Y+ + + E+ + S H+GG
Sbjct: 302 RTDTAVGYSTLMPRAEITYQFVEDVISELAAISP---SPYIHLGGDESNATSAADYDYFF 358
Query: 172 -----------------DEVNMN----------CWNHTKSIT------------------ 186
D + + W + S
Sbjct: 359 GRVTAIANSYGKKVVGWDPSDTSSGATSDSVLQNWTCSASTGTAAKAKGMKVIVSPANAY 418
Query: 187 -DWMYAKFGAWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAA 245
D Y + G W ++ + Y+ DP + + I G E+
Sbjct: 419 LDMKYY---SDSPIGLQWR-GFVNTNRAYNWDPT------------DCIKGANIYGVEST 462
Query: 246 LWSEQ-ADAATLDGRLWPRASAMAERLWSNPAS-NWRAAEYRFLHQRERLVEIGL 298
LW+E LD L+P+ + AE W+ NW + R + RL G+
Sbjct: 463 LWTETFVTQDHLDYMLYPKLLSNAEVGWTARGDRNWDDFKERLIEHTPRLQNKGI 517
Score = 50.5 bits (121), Expect = 5e-07
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 359 ATITANTFFGGHHGAETLSQLIVYDPYTASVVMPER-----VEIQDGPVYPYR 406
T+TAN G G +TL QL+ +VV + I D P Y YR
Sbjct: 133 VTLTANKPEGVFRGNQTLLQLLPAGIEKNTVVSGVQWVIPHSNISDKPEYEYR 185
>2gjx_A Beta-hexosaminidase alpha chain; beta-hexosaminidase A,
glycosidase, TAY-sachs disease, GM2 ganglisode, TIM
barrel, hydrolase; HET: NAG BMA NDG; 2.80A {Homo
sapiens} SCOP: c.1.8.6 d.92.2.1 PDB: 2gk1_A*
Length = 507
Score = 233 bits (595), Expect = 7e-72
Identities = 63/182 (34%), Positives = 95/182 (52%), Gaps = 18/182 (9%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSS-E 70
+LLDT+R++ L +I T+D MA NKLN FHWH+ D SFP+ES +P L + G+Y+
Sbjct: 150 LLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVT 209
Query: 71 KIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCV 130
IY+ +D++E++ Y +RG+ V+ E D P H I LL +
Sbjct: 210 HIYTAQDVKEVIEYARLRGIRVLAEFDTPGHTLSWGPGI----PGLLTP-------CYSG 258
Query: 131 EPPCGQ---LNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITD 187
P G +NP + YE + + E++ +F H+GGDEV+ CW I D
Sbjct: 259 SEPSGTFGPVNPSLNNTYEFMSTFFLEVSSVFP---DFYLHLGGDEVDFTCWKSNPEIQD 315
Query: 188 WM 189
+M
Sbjct: 316 FM 317
Score = 122 bits (309), Expect = 6e-31
Identities = 40/112 (35%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 202 NWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQADAATLDGRLW 261
N S W+ Y +P L PE K+L++G EA +W E D L RLW
Sbjct: 401 NRISYGPDWKDFYVVEP--------LAFEGTPEQKALVIGGEACMWGEYVDNTNLVPRLW 452
Query: 262 PRASAMAERLWSNPAS-NWRAAEYRFLHQRERLVEIGLAAESIEPEWCYQNE 312
PRA A+AERLWSN + + A R H R L+ G+ A+ + +C Q
Sbjct: 453 PRAGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVGFCEQEF 504
Score = 57.9 bits (140), Expect = 3e-09
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 358 NATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
+ + T +G G ET SQL+ + EI+D P +P+R
Sbjct: 102 QCLLLSETVWGALRGLETFSQLVWKSAEGTFFINK--TEIEDFPRFPHR 148
>1jak_A Beta-N-acetylhexosaminidase; glycoside hydrolase, family 20,
substrate-assisted catalysis, alpha/beta barrel,
isofagomin inhibitor complex; HET: IFG; 1.75A
{Streptomyces plicatus} SCOP: c.1.8.6 d.92.2.1 PDB:
1hp4_A* 1hp5_A* 1m01_A* 1m04_A* 1m03_A*
Length = 512
Score = 208 bits (531), Expect = 2e-62
Identities = 44/173 (25%), Positives = 72/173 (41%), Gaps = 13/173 (7%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
+LD +R+F+ +D +K+ ID +A K N H H++D Q + +P L G +
Sbjct: 162 AMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVG 221
Query: 72 -----IYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWT 126
Y++ + +EIV Y R + V+PE+D P H S + L C P
Sbjct: 222 GGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAE-----LNCDGVAPPL 276
Query: 127 KFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCW 179
+ L D Y+ + + E+ L H+GGDE +
Sbjct: 277 YTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTP---GRYLHIGGDEAHSTPK 326
Score = 91.7 bits (228), Expect = 2e-20
Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 14/119 (11%)
Query: 184 SITDWMY--AKFGAWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMG 241
S D Y K+ G +W Y+ Q+ YD DP L + G
Sbjct: 393 SPADRTYLDMKYTKDTPLGLSWA-GYVEVQRSYDWDPAGYLP---------GAPADAVRG 442
Query: 242 QEAALWSEQ-ADAATLDGRLWPRASAMAERLWSNPAS-NWRAAEYRFLHQRERLVEIGL 298
EA LW+E +D LD +PR +AE WS ++ +W + R Q G+
Sbjct: 443 VEAPLWTETLSDPDQLDYMAFPRLPGVAELGWSPASTHDWDTYKVRLAAQAPYWEAAGI 501
Score = 49.3 bits (118), Expect = 1e-06
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 359 ATITANTFFGGHHGAETLSQLIVYDPYTASVVMPE----RVEIQDGPVYPYR 406
TITA G HG +TL QL+ S I+D P Y +R
Sbjct: 109 VTITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTPRYAWR 160
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter
actinomycetemcomitans} SCOP: c.1.8.6
Length = 367
Score = 199 bits (509), Expect = 9e-61
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 18/180 (10%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA----- 66
++LD AR+FY+ + IK ID ++++ N+ H H +D +++ ES ++
Sbjct: 21 LMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDG 80
Query: 67 -----YSSEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFK 121
Y+ + S + +I Y +G+ +IPELD+P H+ + ++K
Sbjct: 81 IYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQK-------DRG 133
Query: 122 KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNH 181
+ +++ + + L E+ D+F D S FH+GGDE + ++
Sbjct: 134 VKYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIF-GDTSQHFHIGGDEFGYSVESN 192
Score = 68.6 bits (168), Expect = 6e-13
Identities = 16/118 (13%), Positives = 29/118 (24%), Gaps = 24/118 (20%)
Query: 169 MGGDEVNMNCWNHTKSITDWMYAKFGAWVGEGN----NWCSPYIGWQKVYDNDPIKLLDQ 224
G +N N + ++Y A W + D
Sbjct: 265 KGFTVLNYNSY--------YLYIVPKASPTFSQDAAFAAKDVIKNWD-LGVWDGR----- 310
Query: 225 TSLNISNNPELKSLIMGQEAALWSEQADAAT---LDGRLWPRASAMAERLWSNPASNW 279
N N + I G ++W E A A + A+ + + +
Sbjct: 311 ---NTKNRVQNTHEIAGAALSIWGEDAKALKDETIQKNTKSLLEAVIHKTNGDEHHHH 365
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Length = 543
Score = 189 bits (482), Expect = 4e-55
Identities = 54/197 (27%), Positives = 87/197 (44%), Gaps = 26/197 (13%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
+LD AR+F DN+ + I+ MA++KLN H H+TD Q + + +YP LT++GA+ E
Sbjct: 143 TMLDVARHFMPKDNVLRFIEVMAMHKLNVLHLHLTDDQGWRMQINRYPKLTETGAWRRES 202
Query: 72 -----------------IYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKD 114
Y+++D+REIV + R + VIPE+D P H +
Sbjct: 203 SLGSWRAGVFDGRPHGGFYTQDDLREIVAFAADRHITVIPEIDVPGHS----QAAIAAYP 258
Query: 115 ELLVCFK--KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGD 172
EL P + + VS+ E + +E+ ++F S +GGD
Sbjct: 259 ELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRNVLDEVVEIFP---SPWISLGGD 315
Query: 173 EVNMNCWNHTKSITDWM 189
EV + W +
Sbjct: 316 EVPLTQWQASAQAQAKA 332
Score = 81.7 bits (202), Expect = 5e-17
Identities = 28/122 (22%), Positives = 46/122 (37%), Gaps = 12/122 (9%)
Query: 199 EGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQ-ADAATLD 257
+ Q VY+ +P L + ++G +A +WSE +
Sbjct: 417 DEPVPVGFVTTLQAVYEFEP--------LPGVEGTDFPGRLLGAQANIWSEHLDSPRRVQ 468
Query: 258 GRLWPRASAMAERLWSNPAS-NWRAAEYRFL-HQRERLVEIGLAAESIE-PEWCYQNEGL 314
+PR SA++E WSNPA ++ R RL +G+ + P Q G+
Sbjct: 469 FAAFPRLSAISEVFWSNPAGRDYDEFLTRLTGAHLARLEAMGVEYRPLSGPAPWQQRPGV 528
Query: 315 CG 316
G
Sbjct: 529 EG 530
Score = 48.5 bits (116), Expect = 2e-06
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 351 YSILFQVNATITANTFFGGHHGAETLSQLIVYDPYTASVVMPER------VEIQDGPVYP 404
Y + I+A G +GA+TL QL+ + V+ V ++D P +
Sbjct: 80 YRLEVSDAVVISAGGAAGAFYGAQTLLQLLGPAALRQAPVVAVEGWSVPRVSVEDKPRFG 139
Query: 405 YR 406
YR
Sbjct: 140 YR 141
>2yl6_A Beta-N-acetylhexosaminidase; peptidoglycan-anchor, hydrolase; HET:
ETE; 1.60A {Streptococcus pneumoniae} PDB: 2yll_A*
2yl8_A* 3rpm_A*
Length = 434
Score = 170 bits (433), Expect = 6e-49
Identities = 25/190 (13%), Positives = 70/190 (36%), Gaps = 28/190 (14%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
+ +D R +++ + +K+ ID H + + F Y+S+
Sbjct: 10 VSIDAGRKYFSPEQLKEIIDKAKHYGYTDLHLLVGN-DGLRFMLDDMSITANGKTYASDD 68
Query: 72 I-------------------YSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQ 112
+ + + ++++Y +G+ +IP +++P H+ ++I
Sbjct: 69 VKRAIEKGTNDYYNDPNGNHLTESQMTDLINYAKDKGIGLIPTVNSPGHM----DAILNA 124
Query: 113 KDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGD 172
EL + + P + + ++ +++ L ++ F + +F++G D
Sbjct: 125 MKELGI---QNPNFSYFGKKSARTVDLDNEQAVAFTKALIDKYAAYFA-KKTEIFNIGLD 180
Query: 173 EVNMNCWNHT 182
E + +
Sbjct: 181 EYANDATDAK 190
Score = 53.7 bits (129), Expect = 5e-08
Identities = 20/106 (18%), Positives = 31/106 (29%), Gaps = 11/106 (10%)
Query: 198 GEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQADAATLD 257
+G W + G N PI + +T I+G A W++ A
Sbjct: 296 ADGQGWYNLDQGL-NGIKNTPITSVPKT-------EGADIPIIGGMVAAWADTPSARYSP 347
Query: 258 GRLWP--RASAMAERLWSNPAS-NWRAAEYRFLHQRERLVEIGLAA 300
RL+ R A A + + A R + A
Sbjct: 348 SRLFKLMRHFANANAEYFAADYESAEQALNEVPKDLNRYTAESVTA 393
>1c7s_A Beta-N-acetylhexosaminidase; glycosyl hydrolase, chitinolysis,
A/B(TIM)-barrel, site directed mutagenesis; HET: CBS;
1.80A {Serratia marcescens} SCOP: b.1.18.2 b.2.2.3
c.1.8.6 d.92.2.1 PDB: 1c7t_A* 1qba_A 1qbb_A*
Length = 858
Score = 173 bits (440), Expect = 7e-48
Identities = 52/227 (22%), Positives = 85/227 (37%), Gaps = 36/227 (15%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
I LD ARNF+ D + + +D MA KLN FH+H++D + + E P LT+ G
Sbjct: 316 IFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHD 375
Query: 72 I--------------------YSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEK 111
+ +SR+D +I+ Y R + VIPE+D PAH S+E
Sbjct: 376 LSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEA 435
Query: 112 QKDELLVCFKKEPWTKFCVEPPCGQ--------------LNPVSDRVYEVLGGLYEEMTD 157
+ +L K++ +F + LNP D + + E+
Sbjct: 436 RYKKLHAAGKEQEANEFRLVDQTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQ 495
Query: 158 LFRTDLSGL--FHMGGDEVNMNCWNHTKSITDWMYAKFGAWVGEGNN 202
+ + + +H GG E + G +
Sbjct: 496 MHKEAGQPIKTWHFGGAEAKNIRLGAGYTDKAKPEPGKGIIDQSNED 542
Score = 79.0 bits (194), Expect = 5e-16
Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 14/130 (10%)
Query: 187 DWMYAKFGAWVGEGNNWCSPYIGWQKVYD--NDPIKLLDQTSLNISNNP------ELKSL 238
D+ Y G W + + +KV+ D + +TS++ N +
Sbjct: 644 DFPYEV--NPDERGYYWGTRFSDERKVFSFAPDNMPQNAETSVDRDGNHFNAKSDKPWPG 701
Query: 239 IMGQEAALWSEQ-ADAATLDGRLWPRASAMAERLWSNPASNWRAAEYRFLHQRERLVEIG 297
G A LWSE ++ ++PRA ++AER W +YR + +
Sbjct: 702 AYGLSAQLWSETQRTDPQMEYMIFPRALSVAERSWHRAG---WEQDYRAGREYKGGETHF 758
Query: 298 LAAESIEPEW 307
+ +++E +W
Sbjct: 759 VDTQALEKDW 768
Score = 43.6 bits (102), Expect = 1e-04
Identities = 11/49 (22%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 358 NATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
A + G +G +++ L+ P S + ++ D P +PYR
Sbjct: 270 EAQVIGFDQAGVFYGLQSILSLV---PSDGSGKIAT-LDASDAPRFPYR 314
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus
pneumoniae} PDB: 2yla_A* 2yl9_A*
Length = 442
Score = 141 bits (356), Expect = 7e-38
Identities = 26/188 (13%), Positives = 72/188 (38%), Gaps = 29/188 (15%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
I +D R ++TL+ +K+ +D + + H + + F Y+S+
Sbjct: 13 ISIDAGRKYFTLNQLKRIVDKASELGYSDVHLLLGN-DGLRFLLDDMTITANGKTYASDD 71
Query: 72 I-------------------YSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQ 112
+ ++ ++ E++ Y + + +IP +++P H+ +++
Sbjct: 72 VKKAIIEGTKAYYDDPNGTALTQAEVTELIEYAKSKDIGLIPAINSPGHM----DAMLVA 127
Query: 113 KDELLVCFKKEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGD 172
++L + + + K ++ ++ + L + D F + +F+ G D
Sbjct: 128 MEKLGIKNPQAHFDKVSKTT----MDLKNEEAMNFVKALIGKYMDFFA-GKTKIFNFGTD 182
Query: 173 EVNMNCWN 180
E + +
Sbjct: 183 EYANDATS 190
Score = 63.8 bits (155), Expect = 3e-11
Identities = 12/76 (15%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 214 YDNDPIKLLDQTSLNI---SNNPELKSLIMGQEAALWSEQADAATLDGRLWPRASAMAER 270
+ I+ +T N + PE+ +G ++W+++ A + ++ +A A+
Sbjct: 293 FLKKAIENTGKTPFNQLASTKYPEVDLPTVGSMLSIWADRPSAEYKEEEIFELMTAFADH 352
Query: 271 LWSNPASNWRAAEYRF 286
+N+ A
Sbjct: 353 NKDYFRANYNALREEL 368
>2epl_X N-acetyl-beta-D-glucosaminidase; glycoside hydrolase, family 20,
GCNA, hydro; 1.40A {Streptococcus gordonii} PDB: 2epk_X
2epm_X 2epn_A* 2epo_A
Length = 627
Score = 126 bits (317), Expect = 9e-32
Identities = 29/169 (17%), Positives = 66/169 (39%), Gaps = 28/169 (16%)
Query: 12 ILLDTARN-FYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSE 70
+ D +RN L + KK I+ +A+ + F ++ D+ +E P
Sbjct: 89 YMADCSRNAVLNLSSAKKMIEVLALMGYSTFELYMEDT----YEIENQPYFGYFRGR--- 141
Query: 71 KIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCV 130
Y+ +++EI Y + +P + AH+ ++ K + + +
Sbjct: 142 --YTVAELQEIEDYAADFDMSFVPCIQTLAHL----SAFVKWGIKEVQELRDVEDI---- 191
Query: 131 EPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCW 179
L ++VY+++ G+++ M L + ++G DE ++
Sbjct: 192 ------LLIGEEKVYDLIEGMFQTMAHLH----TRKINIGMDEAHLVGL 230
Score = 37.3 bits (86), Expect = 0.009
Identities = 5/49 (10%), Positives = 13/49 (26%), Gaps = 8/49 (16%)
Query: 358 NATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
++ + LS + + V+I++ Y
Sbjct: 47 YYQVSYKQPHQLYRALALLSAALRSG--------QDEVQIEEEAAYEDL 87
Score = 36.9 bits (85), Expect = 0.010
Identities = 13/108 (12%), Positives = 22/108 (20%), Gaps = 12/108 (11%)
Query: 195 AWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQADAA 254
A+ G W K+ + W +
Sbjct: 332 AFAGGAWKWIGFTPHNHFSRLVAIEAN----------KACRKNQVKEVIVTGWGDN-GGE 380
Query: 255 TLDGRLWPRASAMAERLWSNPA-SNWRAAEYRFLHQRERLVEIGLAAE 301
T + P AE + N + ++I LA
Sbjct: 381 TSQFSVLPALQIWAELAYRNDLKKVSEHFLVSTGLDFDDFMKIDLANL 428
>2v5c_A O-GLCNACASE NAGJ; glycosidase, GH84, GH84C, hydrolase, coiled coil,
family 84 glycoside hydrolase, carbohydrate binding
module; 2.10A {Clostridium perfringens} PDB: 2cbj_A*
2cbi_A 2vur_A* 2x0y_A* 2j62_A* 2wb5_A* 2xpk_A* 2yds_A*
2ydr_A* 2ydq_A*
Length = 594
Score = 54.1 bits (129), Expect = 5e-08
Identities = 21/179 (11%), Positives = 48/179 (26%), Gaps = 13/179 (7%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
I+ +T + I NKLN + + D + R+ ++
Sbjct: 154 IVEGFYGTPWTHQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWREPYPESEMQRMQELI 213
Query: 72 IYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVE 131
S E+ + V + P +D ++ ++D + K E V
Sbjct: 214 NASAENKVDFV-------FGISPGIDIR------FDGDAGEEDFNHLITKAESLYDMGVR 260
Query: 132 PPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDWMY 190
+ + D+ + + F + + + + Y
Sbjct: 261 SFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDVKPLITVPTEYDTGAMVSNGQPRAY 319
Score = 33.3 bits (75), Expect = 0.17
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 360 TITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
I G +G +T QL+ +PE V I D P R
Sbjct: 113 AIEGKDGDGTFYGVQTFKQLV------KESNIPE-VNITDYPTVSAR 152
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module,
glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil;
3.30A {Clostridium perfringens}
Length = 737
Score = 47.8 bits (112), Expect = 5e-06
Identities = 20/158 (12%), Positives = 46/158 (29%), Gaps = 13/158 (8%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
I+ +T + I NKLN + + D + R+ ++
Sbjct: 154 IVEGFYGTPWTHQDRLDQIKFYGENKLNTYIYAPKDDPYHREKWREPYPESEMQRMQELI 213
Query: 72 IYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVE 131
S E+ + +G+ P +D ++ ++D + K E V
Sbjct: 214 NASAENKVDF-VFGI------SPGIDIR------FDGDAGEEDFNHLITKAESLYDMGVR 260
Query: 132 PPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHM 169
+ + D+ + + F + +
Sbjct: 261 SFAIYWDDIQDKSAAKHAQVLNRFNEEFVKAKGDVKPL 298
Score = 30.8 bits (68), Expect = 1.1
Identities = 13/47 (27%), Positives = 17/47 (36%), Gaps = 7/47 (14%)
Query: 360 TITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
I G +G +T QL+ +PE V I D P R
Sbjct: 113 AIEGKDGDGTFYGVQTFKQLV------KESNIPE-VNITDYPTVSAR 152
>2cho_A Glucosaminidase, hexosaminiase; O-GLCNACASE, hydrolase,
N-acetylglucosamine; 1.85A {Bacteroides
thetaiotaomicron} SCOP: a.246.1.1 c.1.8.10 d.92.2.3 PDB:
2chn_A 2vvn_A* 2vvs_A* 2x0h_A* 2xm2_A* 2w4x_A* 2w66_A*
2w67_A* 2wca_A* 2xj7_A* 2xm1_A* 2j47_A* 2jiw_A* 2wzh_A*
2wzi_A* 2j4g_A*
Length = 716
Score = 46.4 bits (109), Expect = 1e-05
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 1 MSDIEVVQSARILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQ--SFPFESRKY 58
+ D V+ ++ ++ + NK+N + + D S P Y
Sbjct: 121 IKDYPSVRYRGVVEGFYGTPWSHQARLSQLKFYGKNKMNTYIYGPKDDPYHSAPNWRLPY 180
Query: 59 PTLTQSGA 66
P +
Sbjct: 181 PDKEAAQL 188
Score = 28.3 bits (62), Expect = 5.0
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 7/47 (14%)
Query: 360 TITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
+ N G ++ +T +QL+ +PE VEI+D P YR
Sbjct: 91 VLAGNDERGTYYALQTFAQLL------KDGKLPE-VEIKDYPSVRYR 130
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 1e-04
Identities = 73/501 (14%), Positives = 138/501 (27%), Gaps = 164/501 (32%)
Query: 5 EVVQSARILLDTARNFYT--LDNIKKTIDGMAVNKLNYFHWH---ITDSQSFP--FESR- 56
E+VQ + + + R Y + IK ++ Y D+Q F SR
Sbjct: 77 EMVQ--KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 57 -KYPTLTQSGAYSSEKIYSREDIREIVHYGL------------VRGVHVIPELDAPAHVG 103
Y L Q + + ++ G+ V ++D
Sbjct: 135 QPYLKLRQ-------ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-- 185
Query: 104 EGWNSI-EKQKDELLVCFKKEPWTKFC--VEPPCGQLNPVSDRVYEVLGGLYEEMTDLFR 160
W ++ E ++ E K ++P + S + + + E+ L +
Sbjct: 186 --WLNLKNCNSPETVL----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 161 T-----DLSGLFHMGGDEV-NMNCWNH----------T--KSITDWMYAK---------- 192
+ L L V N WN T K +TD++ A
Sbjct: 240 SKPYENCLLVL-----LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHH 294
Query: 193 ------------FGAWVGEGNN-------WCSPY----IG---------WQ--KVYDNDP 218
++ +P I W K + D
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354
Query: 219 IKLLDQTSLNISNNPELKSLIMGQEAALWSEQAD--AATLDGRLWP-------------- 262
+ + ++SLN+ E + + +++ A L +W
Sbjct: 355 LTTIIESSLNVLEPAEYRKMF--DRLSVFPPSAHIPTILL-SLIWFDVIKSDVMVVVNKL 411
Query: 263 RASAMAERLWSNPAS----------NWRAAEYRFLHQRERLVEIGLAAESIEPEWCYQ-N 311
++ E+ ++ + LH+ +V+ Y
Sbjct: 412 HKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRS--IVD------------HYNIP 456
Query: 312 EGLCGSVILTPYASTYIRSYLDCG--SKGTFQSHSGSI-NRVY-SILF---QVNATITAN 364
+ ++ PY Y S++ G K ++ V+ F ++ TA
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 365 TFFGGHHGAETLSQLIVYDPY 385
G TL QL Y PY
Sbjct: 515 NASGSI--LNTLQQLKFYKPY 533
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 1.1
Identities = 28/169 (16%), Positives = 52/169 (30%), Gaps = 52/169 (30%)
Query: 240 MGQEAALWSEQADAATLDGRLWPRASA-MAERL-WS-------NPASNWRAAEYRFLHQR 290
MG + S+ A +W RA + +S NP + F ++
Sbjct: 1631 MGMDLYKTSKAAQD------VWNRADNHFKDTYGFSILDIVINNPVN----LTIHFGGEK 1680
Query: 291 ERLVEIGLAAESIEPEWCYQNEGLCGSVILTPYASTYIRSYLDCGSKGTFQSHSGSINR- 349
+ + +A E +G + + + + SY TF+S G ++
Sbjct: 1681 GKRIRENYSAMIFE----TIVDGKLKTEKIFKEINEHSTSY-------TFRSEKGLLSAT 1729
Query: 350 --------VYSI-LFQV---NATITANTFFGGH---------HGAETLS 377
+ F+ I A+ F GH A+ +S
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMS 1778
Score = 28.1 bits (62), Expect = 7.7
Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 25/88 (28%)
Query: 90 VH-VIPELDAPAHVGEGWNSIEKQKDELLVCF------KKEPWTKFCVEPPCGQLNPVSD 142
+H + +L ++ K K EL+ + K P+ K + V +
Sbjct: 101 IHALAAKLLQEND-----TTLVKTK-ELIKNYITARIMAKRPFDK---KSNSALFRAVGE 151
Query: 143 ---RVYEVLGG-----LY-EEMTDLFRT 161
++ + GG Y EE+ DL++T
Sbjct: 152 GNAQLVAIFGGQGNTDDYFEELRDLYQT 179
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 1.4
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 242 QEAALWSEQADAATLDGRLWPRASAMAERLWSNPASNWRAAEYRFLHQRE 291
W E+A + W + +E++ N +N R A+ F Q +
Sbjct: 107 VMEQEWREKAKKDLEE---WNQR--QSEQVEKNKINN-RIADKAFYQQPD 150
Score = 27.8 bits (61), Expect = 4.4
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 8/44 (18%)
Query: 266 AMAERLWSNPAS--NWRAAEYRFLHQRERLVEIGLAAESIEPEW 307
A A+RL P S WR QR+RL E+ A++ +E EW
Sbjct: 75 AQADRLTQEPESIRKWRE------EQRKRLQELDAASKVMEQEW 112
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel;
1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB:
2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Length = 738
Score = 30.1 bits (67), Expect = 1.5
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 15/104 (14%)
Query: 22 TLDNIKKTIDGMAVNKLNYFH---WHITDSQSFPFESRKYPTLTQSGAYSSEKIYSREDI 78
N+K+ ID A + + W+ F + Y D+
Sbjct: 369 NTANVKRYIDFAAAHGFDAVLVEGWNEGWEDWFGNSKDY--------VFDFVTPYPDFDV 420
Query: 79 REIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKK 122
+EI Y +G+ ++ + E+ D+
Sbjct: 421 KEIHRYAARKGIKMMMHH----ETSASVRNYERHMDKAYQFMAD 460
>1ek9_A Outer membrane protein TOLC; integral membrane protein, alpha
helical barrel, beta barrel; 2.10A {Escherichia coli}
SCOP: f.5.1.1 PDB: 1tqq_A 2vde_A 2vdd_A 2wmz_A* 2xmn_A*
Length = 428
Score = 28.2 bits (63), Expect = 5.0
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 4/50 (8%)
Query: 229 ISNNPELKSLIMGQEAALWSEQADAATLDGRLWPRASAMAERLWSNPASN 278
N L + Q+ A + P A S+ + +
Sbjct: 217 EKRNLSLLQARLSQDLA----REQIRQAQDGHLPTLDLTASTGISDTSYS 262
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.427
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,405,759
Number of extensions: 376021
Number of successful extensions: 869
Number of sequences better than 10.0: 1
Number of HSP's gapped: 803
Number of HSP's successfully gapped: 46
Length of query: 406
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 310
Effective length of database: 4,021,377
Effective search space: 1246626870
Effective search space used: 1246626870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.2 bits)