RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13745
(406 letters)
>d2gjxa1 c.1.8.6 (A:167-528) beta-hexosaminidase A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 362
Score = 226 bits (577), Expect = 2e-71
Identities = 106/366 (28%), Positives = 157/366 (42%), Gaps = 76/366 (20%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSS-E 70
+LLDT+R++ L +I T+D MA NKLN FHWH+ D SFP+ES +P L + G+Y+
Sbjct: 6 LLLDTSRHYLPLSSILDTLDVMAYNKLNVFHWHLVDDPSFPYESFTFPELMRKGSYNPVT 65
Query: 71 KIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCV 130
IY+ +D++E++ Y +RG+ V+ E D P H + L C+
Sbjct: 66 HIYTAQDVKEVIEYARLRGIRVLAEFDTPGHT---LSWGPGIPGLLTPCYSGSEP----- 117
Query: 131 EPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSITDWMY 190
G +NP + YE + + E++ +F H+GGDEV+ CW I D+M
Sbjct: 118 SGTFGPVNPSLNNTYEFMSTFFLEVSSVFP---DFYLHLGGDEVDFTCWKSNPEIQDFMR 174
Query: 191 AK-FGAWVGEGNNWCSP------------YIGWQKVYDNDPIKLLDQTSLNISNN----- 232
K FG + ++ Y+ WQ+V+DN D +
Sbjct: 175 KKGFGEDFKQLESFYIQTLLDIVSSYGKGYVVWQEVFDNKVKIQPDTIIQVWREDIPVNY 234
Query: 233 ---------------------------------------------PELKSLIMGQEAALW 247
PE K+L++G EA +W
Sbjct: 235 MKELELVTKAGFRALLSAPWYLNRISYGPDWKDFYVVEPLAFEGTPEQKALVIGGEACMW 294
Query: 248 SEQADAATLDGRLWPRASAMAERLWSNPA-SNWRAAEYRFLHQRERLVEIGLAAESIEPE 306
E D L RLWPRA A+AERLWSN S+ A R H R L+ G+ A+ +
Sbjct: 295 GEYVDNTNLVPRLWPRAGAVAERLWSNKLTSDLTFAYERLSHFRCELLRRGVQAQPLNVG 354
Query: 307 WCYQNE 312
+C Q
Sbjct: 355 FCEQEF 360
>d1nowa1 c.1.8.6 (A:200-552) beta-hexosaminidase B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 353
Score = 200 bits (509), Expect = 2e-61
Identities = 94/351 (26%), Positives = 136/351 (38%), Gaps = 58/351 (16%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSEK 71
IL+DT+R++ + I KT+D MA NK N HWHI D QSFP++S +P L+ G+YS
Sbjct: 6 ILIDTSRHYLPVKIILKTLDAMAFNKFNVLHWHIVDDQSFPYQSITFPELSNKGSYSLSH 65
Query: 72 IYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWTKFCVE 131
+Y+ D+R ++ Y +RG+ V+PE D P H S K + +LL
Sbjct: 66 VYTPNDVRMVIEYARLRGIRVLPEFDTPGHT----LSWGKGQKDLLTPCYSRQNKLDSFG 121
Query: 132 PPCGQLNPVSDRVYEVLG------------------------------------GLYEEM 155
P LN + G +
Sbjct: 122 PINPTLNTTYSFLTTFFKEISEVFPDQFIHLGGDEVEFKCWESNPKIQDFMRQKGFGTDF 181
Query: 156 TDLFRTDLSGLFHM------GGDEVNMNCWNHTKSITD--WMYAKFGAWVGEGNNW---- 203
L + + + G + K K A+ E +
Sbjct: 182 KKLESFYIQKVLDIIATINKGSIVWQEVFDDKAKLAPGTIVEVWKDSAYPEELSRVTASG 241
Query: 204 -----CSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWSEQADAATLDG 258
+P+ Y D K L+ + K L +G EA LW E DA L
Sbjct: 242 FPVILSAPWYLDLISYGQDWRKYYKVEPLDFGGTQKQKQLFIGGEACLWGEYVDATNLTP 301
Query: 259 RLWPRASAMAERLWSNPAS-NWRAAEYRFLHQRERLVEIGLAAESIEPEWC 308
RLWPRASA+ ERLWS+ + A R R R+VE G+AA+ + +C
Sbjct: 302 RLWPRASAVGERLWSSKDVRDMDDAYDRLTRHRCRMVERGIAAQPLYAGYC 352
>d1jaka1 c.1.8.6 (A:151-506) beta-N-acetylhexosaminidase
{Streptomyces plicatus [TaxId: 1922]}
Length = 356
Score = 187 bits (476), Expect = 1e-56
Identities = 66/348 (18%), Positives = 111/348 (31%), Gaps = 69/348 (19%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAYSSE- 70
+LD +R+F+ +D +K+ ID +A K N H H++D Q + +P L G +
Sbjct: 6 AMLDVSRHFFGVDEVKRYIDRVARYKYNKLHLHLSDDQGWRIAIDSWPRLATYGGSTEVG 65
Query: 71 ----KIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWT 126
Y++ + +EIV Y R + V+PE+D P H S + C P
Sbjct: 66 GGPGGYYTKAEYKEIVRYAASRHLEVVPEIDMPGHTNAALASYAEL-----NCDGVAPPL 120
Query: 127 KFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCW------- 179
+ L D Y+ + + E+ L H+GGDE +
Sbjct: 121 YTGTKVGFSSLCVDKDVTYDFVDDVIGELAALTPGR---YLHIGGDEAHSTPKADFVAFM 177
Query: 180 --------NHTKSITDWMYAKFGAWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISN 231
+ K++ W V + + + I +
Sbjct: 178 KRVQPIVAKYGKTVVGWHQLAGAEPVEGALVQYWGLDRTGDAEKAEVAEAARNGTGLILS 237
Query: 232 N---------------------------------------PELKSLIMGQEAALWSEQ-A 251
+ G EA LW+E +
Sbjct: 238 PADRTYLDMKYTKDTPLGLSWAGYVEVQRSYDWDPAGYLPGAPADAVRGVEAPLWTETLS 297
Query: 252 DAATLDGRLWPRASAMAERLWSNPAS-NWRAAEYRFLHQRERLVEIGL 298
D LD +PR +AE WS ++ +W + R Q G+
Sbjct: 298 DPDQLDYMAFPRLPGVAELGWSPASTHDWDTYKVRLAAQAPYWEAAGI 345
>d1qbaa3 c.1.8.6 (A:338-780) Bacterial chitobiase
(beta-N-acetylhexosaminidase) {Serratia marcescens
[TaxId: 615]}
Length = 443
Score = 163 bits (414), Expect = 1e-46
Identities = 54/229 (23%), Positives = 85/229 (37%), Gaps = 36/229 (15%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGAY---- 67
I LD ARNF+ D + + +D MA KLN FH+H++D + + E P LT+ G
Sbjct: 6 IFLDVARNFHKKDAVLRLLDQMAAYKLNKFHFHLSDDEGWRIEIPGLPELTEVGGQRCHD 65
Query: 68 ----------------SSEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEK 111
+SR+D +I+ Y R + VIPE+D PAH S+E
Sbjct: 66 LSETTCLLPQYGQGPDVYGGFFSRQDYIDIIKYAQARQIEVIPEIDMPAHARAAVVSMEA 125
Query: 112 QKDELLVCFKKEPWTKFCVEPPC--------------GQLNPVSDRVYEVLGGLYEEMTD 157
+ +L K++ +F + P LNP D + + E+
Sbjct: 126 RYKKLHAAGKEQEANEFRLVDPTDTSNTTSVQFFNRQSYLNPCLDSSQRFVDKVIGEIAQ 185
Query: 158 LFR--TDLSGLFHMGGDEVNMNCWNHTKSITDWMYAKFGAWVGEGNNWC 204
+ + +H GGDE + G +
Sbjct: 186 MHKEAGQPIKTWHFGGDEAKNIRLGAGYTDKAKPEPGKGIIDQGNEDKP 234
Score = 79.6 bits (195), Expect = 7e-17
Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 12/102 (11%)
Query: 187 DWMYAKFGAWVG---EGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNN--------PEL 235
D++Y F V G W + + +KV+ P + ++ + +
Sbjct: 329 DYVYMDFPYEVNPDERGYYWGTRFSDERKVFSFAPDNMPQNAETSVDRDGNHFNAKSDKP 388
Query: 236 KSLIMGQEAALWSE-QADAATLDGRLWPRASAMAERLWSNPA 276
G A LWSE Q ++ ++PRA ++AER W
Sbjct: 389 WPGAYGLSAQLWSETQRTDPQMEYMIFPRALSVAERSWHRAG 430
>d1yhta1 c.1.8.6 (A:16-359) Dispersin B, DspB {Actinobacillus
actinomycetemcomitans [TaxId: 714]}
Length = 344
Score = 152 bits (385), Expect = 2e-43
Identities = 48/284 (16%), Positives = 110/284 (38%), Gaps = 23/284 (8%)
Query: 12 ILLDTARNFYTLDNIKKTIDGMAVNKLNYFHWHITDSQSFPFESRKYPTLTQSGA----- 66
++LD AR+FY+ + IK ID ++++ N+ H H +D +++ ES ++
Sbjct: 6 LMLDIARHFYSPEVIKSFIDTISLSGGNFLHLHFSDHENYAIESHLLNQRAENAVQGKDG 65
Query: 67 -----YSSEKIYSREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFK 121
Y+ + S + +I Y +G+ +IPELD+P H+ + ++K
Sbjct: 66 IYINPYTGKPFLSYRQLDDIKAYAKAKGIELIPELDSPNHMTAIFKLVQK-------DRG 118
Query: 122 KEPWTKFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNH 181
+ +++ + + L E+ D+F D S FH+GGDE + ++
Sbjct: 119 VKYLQGLKSRQVDDEIDITNADSITFMQSLMSEVIDIFG-DTSQHFHIGGDEFGYSVESN 177
Query: 182 TKSITDWMYAKFGAWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMG 241
+ IT ++ + W + + ++ + + +
Sbjct: 178 HEFITYANKLS--YFLEKKG---LKTRMWNDGLIKNTFEQINPNIEITYWSYDGDTQDKN 232
Query: 242 QEAALWSEQADAATLDGRLWPRASAMAERLWSNPASNWRAAEYR 285
+ A + L + + + + L+ P ++ ++
Sbjct: 233 EAAERRDMRVSLPELLAKGFTVLNYNSYYLYIVPKASPTFSQDA 276
Score = 62.2 bits (150), Expect = 2e-11
Identities = 13/85 (15%), Positives = 21/85 (24%), Gaps = 10/85 (11%)
Query: 189 MYAKFGAWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMGQEAALWS 248
A W + D N N + I G ++W
Sbjct: 266 PKASPTFSQDAAFAAKDVIKNW-DLGVWDGR--------NTKNRVQNTHEIAGAALSIWG 316
Query: 249 EQADAATLDGRLWPRASAMAERLWS 273
E A A D + ++ E +
Sbjct: 317 EDAKA-LKDETIQKNTKSLLEAVIH 340
>d2gjxa2 d.92.2.1 (A:23-166) beta-hexosaminidase A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 38.0 bits (87), Expect = 5e-04
Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 358 NATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGP 401
+ + T +G G ET SQL+ + EI+D P
Sbjct: 102 QCLLLSETVWGALRGLETFSQLVWKSAEGTFFINK--TEIEDFP 143
>d1nowa2 d.92.2.1 (A:55-199) beta-hexosaminidase B, N-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 145
Score = 36.8 bits (84), Expect = 0.001
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 358 NATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGP 401
A + AN +G G ET SQL+ D Y + + E I D P
Sbjct: 103 VAVLKANRVWGALRGLETFSQLVYQDSYG-TFTINE-STIIDSP 144
>d1qbaa4 d.92.2.1 (A:201-337) Bacterial chitobiase, Domain 2
{Serratia marcescens [TaxId: 615]}
Length = 137
Score = 33.2 bits (75), Expect = 0.023
Identities = 8/44 (18%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 358 NATITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGP 401
A + G +G +++ L+ P S + ++ D P
Sbjct: 97 EAQVIGFDQAGVFYGLQSILSLV---PSDGSGKIAT-LDASDAP 136
>d1jaka2 d.92.2.1 (A:8-150) beta-N-acetylhexosaminidase, N-terminal
domain {Streptomyces plicatus [TaxId: 1922]}
Length = 143
Score = 29.7 bits (66), Expect = 0.33
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 4/46 (8%)
Query: 360 TITANTFFGGHHGAETLSQLIVYDPYTASVVMPER----VEIQDGP 401
TITA G HG +TL QL+ S I+D P
Sbjct: 97 TITARKAAGLFHGVQTLRQLLPPAVEKDSAQPGPWLVAGGTIEDTP 142
>d2cbia3 d.92.2.3 (A:41-178) Hyaluronidase N-terminal domain
{Clostridium perfringens [TaxId: 1502]}
Length = 138
Score = 29.3 bits (65), Expect = 0.43
Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 7/42 (16%)
Query: 360 TITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGP 401
I G +G +T QL+ V I D P
Sbjct: 103 AIEGKDGDGTFYGVQTFKQLV--KESNIPE-----VNITDYP 137
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 124
Score = 27.6 bits (61), Expect = 1.3
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 120 FKKEPWTKFCVEPPCGQLNP 139
K + V+PPCG L+P
Sbjct: 43 IKTTNMKRLGVDPPCGVLDP 62
>d1seja2 d.117.1.1 (A:233-521) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, TS domain
{Cryptosporidium hominis [TaxId: 237895]}
Length = 289
Score = 28.1 bits (62), Expect = 1.6
Identities = 8/76 (10%), Positives = 19/76 (25%), Gaps = 4/76 (5%)
Query: 169 MGGDEVNMNCWNHTKSITDWMYAKFGAWVGEGN----NWCSPYIGWQKVYDNDPIKLLDQ 224
+ N + + ++ Y Y + L +
Sbjct: 79 KKVYIWSGNGSKEYLERIGLGHREENDLGPIYGFQWRHYNGEYKTMHDDYTGVGVDQLAK 138
Query: 225 TSLNISNNPELKSLIM 240
+ NNP+ + I+
Sbjct: 139 LIETLKNNPKDRRHIL 154
>d1h41a1 c.1.8.10 (A:152-712) alpha-D-glucuronidase catalytic domain
{Pseudomonas cellulosa [TaxId: 155077]}
Length = 561
Score = 28.2 bits (63), Expect = 2.4
Identities = 5/28 (17%), Positives = 12/28 (42%)
Query: 99 PAHVGEGWNSIEKQKDELLVCFKKEPWT 126
P + + W + ++L++ F W
Sbjct: 421 PEPIAKAWGDLNSVPEDLILWFHHLSWD 448
>d1l8na1 c.1.8.10 (A:143-678) alpha-D-glucuronidase catalytic domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 536
Score = 27.8 bits (62), Expect = 3.1
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 99 PAHVGEGWNSIEKQKDELLVCFKKEPWT 126
+ S++ DELL+ F P+T
Sbjct: 426 FPENAAMYESLDTCPDELLLFFHHVPYT 453
>d2choa3 d.92.2.3 (A:5-126) Glucosaminidase GH84, N-terminal domain
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 122
Score = 25.9 bits (56), Expect = 5.9
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 7/42 (16%)
Query: 360 TITANTFFGGHHGAETLSQLIVYDPYTASVVMPERVEIQDGP 401
+ N G ++ +T +QL+ VEI+D P
Sbjct: 87 VLAGNDERGTYYALQTFAQLLKDGKLPE-------VEIKDYP 121
>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate
aldolase/transaldolase {Thermus thermophilus [TaxId:
274]}
Length = 211
Score = 26.3 bits (57), Expect = 5.9
Identities = 29/178 (16%), Positives = 53/178 (29%), Gaps = 15/178 (8%)
Query: 71 KIY----SREDIREIVHYGLVRGVHVIPELDAPAHVGEGWNSIEKQKDELLVCFKKEPWT 126
++Y S E+IREI +G++ GV P L A A +G E+ L +
Sbjct: 2 ELYLDTASLEEIREIAAWGVLSGVTTNPTLVAKAFAAKGEALTEEAFAAHLRAICETVGG 61
Query: 127 KFCVEPPCGQLNPVSDRVYEVLGGLYEEMTDLFRTDLSGLFHMGGDEVNMNCWNHTKSI- 185
E ++ + G + +
Sbjct: 62 PVSAEVTA-------LEAEAMVAEGRRLAAIHPNIVVKLPTTEEGLKACKRLSAEGIKVN 114
Query: 186 -TDWMYAKFGAWVGE-GNNWCSPYIGWQKVYDNDPIKLLDQTSLNISNNPELKSLIMG 241
T A G ++ SP++G D +LL + + +L ++
Sbjct: 115 MTLIFSANQALLAARAGASYVSPFLGRVDDISWDGGELLREIV-EMIQVQDLPVKVIA 171
>d1pc3a_ c.94.1.1 (A:) Phosphate-binding protein {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 333
Score = 26.5 bits (57), Expect = 6.6
Identities = 9/52 (17%), Positives = 15/52 (28%)
Query: 167 FHMGGDEVNMNCWNHTKSITDWMYAKFGAWVGEGNNWCSPYIGWQKVYDNDP 218
+ +VN N ++ + + G W P I N P
Sbjct: 84 LAISAQQVNYNLPGVSEHLKLNGKVLAAMYQGTIKTWDDPQIAALNPGVNLP 135
>d2a7ka1 c.14.1.3 (A:1-230) Carbapenem biosynthes protein CarB
{Pectobacterium carotovorum [TaxId: 554]}
Length = 230
Score = 26.3 bits (56), Expect = 6.7
Identities = 11/143 (7%), Positives = 27/143 (18%), Gaps = 8/143 (5%)
Query: 167 FHMGGDEVNMNCWNHTKSITDWMYAKFGAWVGEGNNWCSPYIGWQKVYDNDPIKLLDQTS 226
V ++ + + + + + +
Sbjct: 83 VIDLYQAVLNVNKPTIAAVDGYAIGMGFQFALMFDQRLMASTANFVMPELKHGIGCSVGA 142
Query: 227 LNISNNPELKSLIMGQEAALWSEQADAATL--------DGRLWPRASAMAERLWSNPASN 278
+ ++ + L A A + S PAS
Sbjct: 143 AILGFTHGFSTMQEIIYQCQSLDAPRCVDYRLVNQVVESSALLDAAITQAHVMASYPASA 202
Query: 279 WRAAEYRFLHQRERLVEIGLAAE 301
+ + L+E A
Sbjct: 203 FINTKRAVNKPFIHLLEQTRDAS 225
>d1lf6a2 b.30.5.5 (A:11-287) Bacterial glucoamylase, N-terminal
domain {Thermoanaerobacterium thermosaccharolyticum
[TaxId: 1517]}
Length = 277
Score = 25.9 bits (57), Expect = 9.0
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 369 GHHGAETLSQLIVYDPYTASVVMPERVEIQDGPVYPYR 406
G +++ I D S++M + E +G ++ Y+
Sbjct: 103 DKKGRYRITKDIFTDVKRNSLIMKAKFEALEGSIHDYK 140
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.427
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,599,724
Number of extensions: 74894
Number of successful extensions: 227
Number of sequences better than 10.0: 1
Number of HSP's gapped: 210
Number of HSP's successfully gapped: 32
Length of query: 406
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 319
Effective length of database: 1,213,086
Effective search space: 386974434
Effective search space used: 386974434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)