BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13746
(294 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F3S|A Chain A, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
pdb|3F3S|B Chain B, The Crystal Structure Of Human Lambda-Crystallin, Cryl1
Length = 313
Score = 204 bits (519), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 107/274 (39%), Positives = 152/274 (55%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
G+IG++WAM+FAS G ++
Sbjct: 12 GVIGRSWAMLFASGG-------------------------------------------FQ 28
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ LISG P ++E +E A+ I
Sbjct: 29 VKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNIQEAVEGAMHI 88
Query: 140 QESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNPPY 199
QE VPE L++K +++ +D + H Q IVAHPVNPPY
Sbjct: 89 QECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPPY 148
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+IPLVE+VP T+ + RT +M +IG P+ + E+ GF LNR+Q+A+++E + LV
Sbjct: 149 YIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWRLVE 208
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+G++S D+D VMSEGLG+RYAF+GPLET+HLN+
Sbjct: 209 EGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA 242
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 198 bits (504), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 145/274 (52%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
GL+G++WAM+FAS G ++
Sbjct: 15 GLVGRSWAMLFASGG-------------------------------------------FR 31
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V LYD+ QI A I+ ++ Q G LKGSLS EEQ LIS L E +E + I
Sbjct: 32 VKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEGVVHI 91
Query: 140 QESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNPPY 199
QE VPE L +K +++ +D + H Q IVAHPVNPPY
Sbjct: 92 QECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPY 151
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+IPLVE+VP TS + RT +M +IG PV + EI GF LNR+Q+A+++E + LV
Sbjct: 152 YIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVE 211
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+G++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 212 EGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNA 245
>pdb|1ZEJ|A Chain A, Crystal Structure Of The 3-Hydroxyacyl-Coa Dehydrogenase
(Hbd-9, Af2017) From Archaeoglobus Fulgidus Dsm 4304 At
2.00 A Resolution
Length = 293
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 83/189 (43%), Gaps = 10/189 (5%)
Query: 100 TLQDYHQKGCLKGSLS-PEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAID 158
LQD +K PEE I T L E ++D + E+V E L K +V R ++
Sbjct: 38 VLQDVSEKALEAAREQIPEELLSKIEFTTTL-EKVKDCDIVXEAVFEDLNTKVEVLREVE 96
Query: 159 IFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVIT 218
E S+F+ H NPP+ PLVEIV + +T + +
Sbjct: 97 --RLTNAPLCSNTSVISVDDIAERLDSPSRFLGVHWXNPPHVXPLVEIVISRFTDSKTVA 154
Query: 219 RTREIMTEIGMKPVTLTTEIRGFAL-NRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLG 277
+ E+G + V +G +L NR AVL+E + +GV A+D+DRV LG
Sbjct: 155 FVEGFLRELGKEVVV----CKGQSLVNRFNAAVLSEASRXIEEGV-RAEDVDRVWKHHLG 209
Query: 278 LRYAFLGPL 286
L Y GPL
Sbjct: 210 LLYTLFGPL 218
>pdb|4DYD|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E12|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
pdb|4E13|A Chain A, Substrate-Directed Dual Catalysis Of Dicarbonyl Compounds
By Diketoreductase
Length = 283
Score = 67.8 bits (164), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 3/222 (1%)
Query: 70 SLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 129
+ A G+ V+ YD+ ++ ++ AK + Y ++ + ++ G I + L
Sbjct: 20 AFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDL 79
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ ++DA + E+VPE L +K +Y + ++ +F
Sbjct: 80 AQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLVGYTGRGDKF 139
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
+ H N + E++ T V + E + IGM P+ L E G+ LN +
Sbjct: 140 LALHFANHVWVNNTAEVMGTTKTDPEVYQQVVEFASAIGMVPIELKKEKAGYVLNSLLVP 199
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
+L+ L+ DG+ + ID+ G G A GP E +
Sbjct: 200 LLDAAAELLVDGIADPETIDKTWRIGTG---APKGPFEIFDI 238
>pdb|3HDH|A Chain A, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|B Chain B, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
pdb|3HDH|C Chain C, Pig Heart Short Chain L-3-Hydroxyacyl Coa Dehydrogenase
Revisited: Sequence Analysis And Crystal Structure
Determination
Length = 302
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 89/218 (40%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ IS +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ E L++K ++++ +D F +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE+V TS++ + + +G PV+ + GF +NR+
Sbjct: 155 AGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVSC-KDTPGFIVNRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLIEAVRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
>pdb|1F12|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F12|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With 3-
Hydroxybutyryl-Coa
pdb|1F14|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F14|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase (Apo)
pdb|1F17|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
pdb|1F17|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With Nadh
Length = 310
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDECVEKTLSTIATSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ E L++K+++++ +D F +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 155 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK-DTPGFIVNRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
>pdb|1LSO|A Chain A, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSO|B Chain B, Crystal Structure Of The S137a Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ E L++K+++++ +D F +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTASLQITSIANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 155 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK-DTPGFIVNRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
>pdb|1F0Y|A Chain A, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
pdb|1F0Y|B Chain B, L-3-Hydroxyacyl-Coa Dehydrogenase Complexed With
Acetoacetyl-Coa And Nad+
Length = 302
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ E L++K+++++ +D F +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 155 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK-DTPGFIVNRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
>pdb|1M76|A Chain A, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M76|B Chain B, Crystal Structure Of The S137c Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 89/218 (40%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ E L++K+++++ +D F +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTCSLQITSIANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 155 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK-DTPGFIVNRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
>pdb|1LSJ|A Chain A, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
pdb|1LSJ|B Chain B, Crystal Structure Of The E110q Mutant Of L-3-hydroxyacyl-
Coa Dehydrogenase In Complex With Nad
Length = 302
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ + L++K+++++ +D F +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVQNLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 155 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK-DTPGFIVNRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
>pdb|1IL0|A Chain A, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
pdb|1IL0|B Chain B, X-Ray Crystal Structure Of The E170q Mutant Of Human L-3-
Hydroxyacyl-Coa Dehydrogenase
Length = 302
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ E L++K+++++ +D F +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LV+++ TS++ + +G PV+ + GF +NR+
Sbjct: 155 AGLHFFNPVPVMKLVQVIKTPMTSQKTFESLVDFSKALGKHPVSCK-DTPGFIVNRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
>pdb|1M75|A Chain A, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
pdb|1M75|B Chain B, Crystal Structure Of The N208s Mutant Of L-3-Hydroxyacyl-
Coa Dehydrogenase In Complex With Nad And
Acetoacetyl-Coa
Length = 302
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 89/218 (40%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ E L++K+++++ +D F +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF ++R+
Sbjct: 155 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVSRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 308
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 88/218 (40%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ E L++K+++++ +D +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 155 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVSCK-DTPGFIVNRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
>pdb|3RQS|A Chain A, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
pdb|3RQS|B Chain B, Crystal Structure Of Human L-3- Hydroxyacyl-Coa
Dehydrogenase (Ec1.1.1.35) From Mitochondria At The
Resolution 2.0 A, Northeast Structural Genomics
Consortium Target Hr487, Mitochondrial Protein
Partnership
Length = 324
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 86/218 (39%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 57 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 116
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ E L++K+++++ +D F +T + +F
Sbjct: 117 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRF 176
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 177 AGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRLLVP 235
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID G G GP E
Sbjct: 236 YLXEAIRLYERGDASKEDIDTAXKLGAGYP---XGPFE 270
>pdb|2WTB|A Chain A, Arabidopsis Thaliana Multifuctional Protein, Mfp2
Length = 725
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 86/199 (43%), Gaps = 4/199 (2%)
Query: 76 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED 135
+ Y V L +V + +E ++ LQ +KG + E+ L+ G+ + E D
Sbjct: 334 SNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQE-KFEKTMSLLKGS-LDYESFRD 391
Query: 136 AIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAHPV 195
+ E+V E + +K Q++ ++ + E + + + + AH
Sbjct: 392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTIDLNKIGERTKSQDRIVGAHFF 451
Query: 196 NPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECY 255
+P + +PL+EIV TS +VI ++ +I PV + GFA+NR+ F
Sbjct: 452 SPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPVVVGN-CTGFAVNRMFFPYTQAAM 510
Query: 256 HLVHDGVLSAKDIDRVMSE 274
LV G IDR +S+
Sbjct: 511 FLVECGA-DPYLIDRAISK 528
>pdb|2HDH|A Chain A, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
pdb|2HDH|B Chain B, Biochemical Characterization And Structure Determination
Of Human Heart Short Chain L-3-Hydroxyacyl Coa
Dehydrogenase Provide Insight Into Catalytic Mechanism
Length = 293
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/218 (21%), Positives = 85/218 (38%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE----QFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + + +E I+ +
Sbjct: 24 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVAKTLSTIATSTDA 83
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ + E++ E L++K+++++ +D +T + +F
Sbjct: 84 ASVVHSTDLVVEAIVENLKVKNELFKRLDKRAAEHTIFASNTSSLQITSIANATTRQDRF 143
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 144 AGLHFFNPVPVXKLVEVIKTPXTSQKTFESLVDFSKALGKHPVSC-KDTPGFIVNRLLVP 202
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID G G GP E
Sbjct: 203 YLXEAIRLYERGDASKEDIDTAXKLGAGYPX---GPFE 237
>pdb|3MOG|A Chain A, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|B Chain B, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
pdb|3MOG|C Chain C, Crystal Structure Of 3-Hydroxybutyryl-Coa Dehydrogenase
From Escherichia Coli K12 Substr. Mg1655
Length = 483
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 85/218 (38%), Gaps = 6/218 (2%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G++V LYD+ +E + A + I L +G L LI T + L
Sbjct: 25 ASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI--HAL 82
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVAH 193
A + E+ E L++K ++ + + + H
Sbjct: 83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVAGLH 142
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
NP + LVE+V T+ V+ + E+ G +PV + GF +NR+ +E
Sbjct: 143 FFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVRCHS-TPGFIVNRVARPYYSE 201
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
+ + + V + + ID + +G G +GPLE L
Sbjct: 202 AWRALEEQVAAPEVIDAALRDGAGFP---MGPLELTDL 236
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 240 GFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPL 286
G + R ++NE + GV S +DID M LG+ Y + GPL
Sbjct: 387 GMLIWRTVAMIINEALDALQKGVASEQDIDTAMR--LGVNYPY-GPL 430
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 12/223 (5%)
Query: 70 SLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 129
++S A G V + +Q++ AK I TL+ + G S + + S T
Sbjct: 53 AISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST--- 109
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ L + E+V E + +K +V+ + + ST R Q
Sbjct: 110 -KELSTVDLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTSALNVDDIASSTDRPQL 167
Query: 190 IVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
++ H +P + + L+E++P+ ++S I + +IG K + GF NR+
Sbjct: 168 VIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG-KIGVVVGNCYGFVGNRMLA 226
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
N+ + L+ +G +D+D V+ E G + +GP L
Sbjct: 227 PYYNQGFFLLEEGS-KPEDVDGVLEE-FGFK---MGPFRVSDL 264
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 12/223 (5%)
Query: 70 SLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 129
++S A G V + +Q++ AK I TL+ + G S + + S T
Sbjct: 317 AISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST--- 373
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ L + E+V E + +K +V+ + + ST R Q
Sbjct: 374 -KELSTVDLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTSALNVDDIASSTDRPQL 431
Query: 190 IVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
++ H +P + + L+E++P+ ++S I + +IG K + GF NR+
Sbjct: 432 VIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG-KIGVVVGNCYGFVGNRMLA 490
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
N+ + L+ +G +D+D V+ E G + +GP L
Sbjct: 491 PYYNQGFFLLEEGS-KPEDVDGVLEE-FGFK---MGPFRVSDL 528
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 12/223 (5%)
Query: 70 SLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 129
++S A G V + +Q++ AK I TL+ + G S + + S T
Sbjct: 332 AISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST--- 388
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ L + E+V E + +K +V+ + + ST R Q
Sbjct: 389 -KELSTVDLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTSALNVDDIASSTDRPQL 446
Query: 190 IVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
++ H +P + + L+E++P+ ++S I + +IG K + GF NR+
Sbjct: 447 VIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG-KIGVVVGNCYGFVGNRMLA 505
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
N+ + L+ +G +D+D V+ E G + +GP L
Sbjct: 506 PYYNQGFFLLEEGS-KPEDVDGVLEE-FGFK---MGPFRVSDL 543
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/223 (21%), Positives = 92/223 (41%), Gaps = 12/223 (5%)
Query: 70 SLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL 129
++S A G V + +Q++ AK I TL+ + G S + + S T
Sbjct: 332 AISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST--- 388
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQF 189
+ L + E+V E + +K +V+ + + ST R Q
Sbjct: 389 -KELSTVDLVVEAVFEDMNLKKKVFAELSA-LCKPGAFLCTNTSALNVDDIASSTDRPQL 446
Query: 190 IVA-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
++ H +P + + L+E++P+ ++S I + +IG K + GF NR+
Sbjct: 447 VIGTHFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIG-KIGVVVGNCYGFVGNRMLA 505
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
N+ + L+ +G +D+D V+ E G + +GP L
Sbjct: 506 PYYNQGFFLLEEGS-KPEDVDGVLEE-FGFK---MGPFRVSDL 543
>pdb|1WDK|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDK|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native2)
pdb|1WDL|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDL|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form Ii (Native4)
pdb|1WDM|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|1WDM|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form I (Native3)
pdb|2D3T|A Chain A, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
pdb|2D3T|B Chain B, Fatty Acid Beta-Oxidation Multienzyme Complex From
Pseudomonas Fragi, Form V
Length = 715
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Query: 188 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247
F+ H NP + +PLVE++ +S+ + T ++G P+ + + GF +NR+
Sbjct: 446 NFVGMHFFNPVHMMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPI-VVNDCPGFLVNRVL 504
Query: 248 FAVLNECYHLVHDGVLSAKDIDRVMSE 274
F LV GV + ID+VM +
Sbjct: 505 FPYFGGFAKLVSAGVDFVR-IDKVMEK 530
>pdb|3K6J|A Chain A, Crystal Structure Of The Dehydrogenase Part Of
Multifuctional Enzyme 1 From C.Elegans
Length = 460
Score = 35.4 bits (80), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 62/161 (38%), Gaps = 7/161 (4%)
Query: 133 LEDAIFIQESVPEILQIKHQVYRAIDIFMXXXXXXXXXXXXXXXXXXXEHSTHRSQFIVA 192
L + I ESV E +++K +++ ++ S +
Sbjct: 128 LSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEISSVLRDPSNLVGI 187
Query: 193 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLN 252
H NP I LVEI+ + TS + I + I PV L + F NR+ +
Sbjct: 188 HFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPV-LVGNCKSFVFNRLLHVYFD 246
Query: 253 ECYHLVHDGVLSAKDIDRVMSEGLGLRYAFL-GPLETIHLN 292
+ L+++ ID++++ + FL GP+ +N
Sbjct: 247 QSQKLMYEYGYLPHQIDKIIT-----NFGFLMGPMTVADMN 282
>pdb|2W8M|A Chain A, Structure Of D212, A Nuclease From A Fusselovirus.
pdb|2W8M|B Chain B, Structure Of D212, A Nuclease From A Fusselovirus
Length = 212
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 9 AQGGFYPDGIIGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52
A+ +YP I + G +W + Y S+Y +LS ++E AK
Sbjct: 86 AKDSYYPLLWIDITGSSWTEEQSKERYGESIYAILSVKVETAKK 129
>pdb|3KAJ|A Chain A, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAJ|B Chain B, Apoenzyme Structure Of Homoglutathione Synthetase From
Glycine Max In Open Conformation
pdb|3KAK|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAK|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Open Conformation With Gamma-Glutamyl-Cysteine Bound.
pdb|3KAL|A Chain A, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
pdb|3KAL|B Chain B, Structure Of Homoglutathione Synthetase From Glycine Max
In Closed Conformation With Homoglutathione, Adp, A
Sulfate Ion, And Three Magnesium Ions Bound
Length = 499
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 10 QGGFYPDGIIGLIGQAWAMIFASAGYKVSLYDVLSE 45
+G PDG + + GQA ++++ AGY Y SE
Sbjct: 273 EGKILPDGTLSVDGQAISVVYFRAGYTPKDYPSESE 308
>pdb|1Q2L|A Chain A, Crystal Structure Of Pitrilysin
Length = 939
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 49 NAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVS--LYDVLSEQIENAKNTIQHTLQDYHQ 106
NA+ T+ T +++PAH G K S + LS++ N +Q L+D+H+
Sbjct: 144 NAELTMARTRDGMRMAQVSAETINPAHPGSKFSGGNLETLSDK---PGNPVQQALKDFHE 200
Query: 107 K 107
K
Sbjct: 201 K 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,231,865
Number of Sequences: 62578
Number of extensions: 305038
Number of successful extensions: 1201
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 35
length of query: 294
length of database: 14,973,337
effective HSP length: 98
effective length of query: 196
effective length of database: 8,840,693
effective search space: 1732775828
effective search space used: 1732775828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)