BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13746
(294 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RDZ2|CRYL1_PONAB Lambda-crystallin homolog OS=Pongo abelii GN=CRYL1 PE=2 SV=3
Length = 319
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/274 (42%), Positives = 163/274 (59%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
G+IG++WAM+FAS G ++
Sbjct: 15 GVIGRSWAMLFASGG-------------------------------------------FQ 31
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ LISG P ++E +E A+ I
Sbjct: 32 VKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNIQEAVEGAMHI 91
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QE VPE L++K +++ +D + ILSSSTS +PS L H Q IVAHPVNPPY
Sbjct: 92 QECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPPY 151
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+IPLVE+VP T+ + RT +M +IG P+ + E+ GF LNR+Q+A+++E + LV
Sbjct: 152 YIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWRLVE 211
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+G++S D+D VMSEGLG+RYAF+GPLET+HLN+
Sbjct: 212 EGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA 245
>sp|Q9Y2S2|CRYL1_HUMAN Lambda-crystallin homolog OS=Homo sapiens GN=CRYL1 PE=1 SV=3
Length = 319
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 117/274 (42%), Positives = 163/274 (59%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
G+IG++WAM+FAS G ++
Sbjct: 15 GVIGRSWAMLFASGG-------------------------------------------FQ 31
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V LYD+ +QI NA I+ ++ Q G LKGSLS EEQ LISG P ++E +E A+ I
Sbjct: 32 VKLYDIEQQQIRNALENIRKEMKLLEQAGSLKGSLSVEEQLSLISGCPNIQEAVEGAMHI 91
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QE VPE L++K +++ +D + ILSSSTS +PS L H Q IVAHPVNPPY
Sbjct: 92 QECVPEDLELKKKIFAQLDSIIDDRVILSSSTSCLMPSKLFAGLVHVKQCIVAHPVNPPY 151
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+IPLVE+VP T+ + RT +M +IG P+ + E+ GF LNR+Q+A+++E + LV
Sbjct: 152 YIPLVELVPHPETAPTTVDRTHALMKKIGQCPMRVQKEVAGFVLNRLQYAIISEAWRLVE 211
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+G++S D+D VMSEGLG+RYAF+GPLET+HLN+
Sbjct: 212 EGIVSPSDLDLVMSEGLGMRYAFIGPLETMHLNA 245
>sp|Q99KP3|CRYL1_MOUSE Lambda-crystallin homolog OS=Mus musculus GN=Cryl1 PE=2 SV=3
Length = 319
Score = 206 bits (523), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 122/286 (42%), Positives = 164/286 (57%), Gaps = 44/286 (15%)
Query: 8 PAQGGFYPDGIIGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL 67
PA GG G GLIG++WAM+FAS G
Sbjct: 4 PAAGGVVIVGS-GLIGRSWAMLFASGG--------------------------------- 29
Query: 68 KGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP 127
+KV LYD+ +QI +A I+ ++ Q G LKGSLS E Q LISG
Sbjct: 30 ----------FKVKLYDIEQQQITDALENIRKEMKSLEQSGSLKGSLSAERQLSLISGCG 79
Query: 128 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRS 187
L E +E A+ IQE VPE L++K +++ +D + ILSSS+S LPS L H
Sbjct: 80 NLAEAVEGAVHIQECVPENLELKKKIFAQLDRIVDDRVILSSSSSCLLPSKLFSGLAHVK 139
Query: 188 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247
Q IVAHPVNPPY++PLVE+VP T+ + RT +M +IG PV + EI GF LNR+Q
Sbjct: 140 QCIVAHPVNPPYYVPLVELVPHPETAPATMDRTYALMKKIGQSPVRVLKEIDGFVLNRLQ 199
Query: 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+AV++E + LV + ++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 200 YAVISEAWRLVEEEIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNA 245
>sp|Q811X6|CRYL1_RAT Lambda-crystallin homolog OS=Rattus norvegicus GN=Cryl1 PE=2 SV=3
Length = 319
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 165/286 (57%), Gaps = 44/286 (15%)
Query: 8 PAQGGFYPDGIIGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCL 67
PA GG G GLIG++WAM+FAS G
Sbjct: 4 PAAGGVVIIGS-GLIGRSWAMLFASGG--------------------------------- 29
Query: 68 KGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP 127
+KV LYD+ +QI NA +I+ ++ Q G LKGSL E+Q LISG
Sbjct: 30 ----------FKVKLYDIEQQQITNALESIRKEMKSLEQSGSLKGSLGAEQQLSLISGCG 79
Query: 128 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRS 187
L E +E A+ IQE VPE L++K +++ +D + ILSSS+S LPS L H
Sbjct: 80 NLAEAVEGAMHIQECVPENLELKKKIFAQLDRIVDDQVILSSSSSCLLPSKLFTGLAHVK 139
Query: 188 QFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247
Q IVAHPVNPPY++PLVE+VP T+ + RT +M +I PV + EI GF LNR+Q
Sbjct: 140 QCIVAHPVNPPYYVPLVELVPHPETAPATMDRTYALMKKIRQTPVRVLKEIDGFVLNRLQ 199
Query: 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+A+++E + LV +G++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 200 YAIISEAWRLVEEGIVSPNDLDLVMSDGLGMRYAFIGPLETMHLNA 245
>sp|Q8SQ26|CRYL1_PIG Lambda-crystallin homolog OS=Sus scrofa GN=CRYL1 PE=2 SV=3
Length = 322
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 116/274 (42%), Positives = 159/274 (58%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
GLIG++WAM+FAS G ++
Sbjct: 18 GLIGRSWAMLFASGG-------------------------------------------FR 34
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V LYD+ +Q+ A +TI+ ++ Q G LKGSL EEQ LISG LRE +E + I
Sbjct: 35 VKLYDIEQQQVTGALDTIRKEMKLLEQSGALKGSLGAEEQLALISGCSDLREAVEGTVHI 94
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QE VPE L++K Q++ +D + N +LSSS+S LPS L H Q +VAHPVNPPY
Sbjct: 95 QECVPENLELKQQLFAQLDQIVDGNVVLSSSSSCLLPSKLFAGLVHVRQCLVAHPVNPPY 154
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+PLVE+VP T+ + RT +M +IG PV + E+ GFALNR+Q+A++ E + LV
Sbjct: 155 HVPLVELVPHPETAPATMARTYALMRQIGQSPVRILKEVDGFALNRLQYALIGEAWRLVE 214
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
++S D+D VMS+GLGLRYAF+GPLET+HLN+
Sbjct: 215 ARIVSPGDLDLVMSDGLGLRYAFIGPLETMHLNA 248
>sp|P14755|CRYL1_RABIT Lambda-crystallin OS=Oryctolagus cuniculus GN=CRYL1 PE=1 SV=3
Length = 319
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/274 (41%), Positives = 156/274 (56%), Gaps = 43/274 (15%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
GL+G++WAM+FAS G ++
Sbjct: 15 GLVGRSWAMLFASGG-------------------------------------------FR 31
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
V LYD+ QI A I+ ++ Q G LKGSLS EEQ LIS L E +E + I
Sbjct: 32 VKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEGVVHI 91
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QE VPE L +K +++ +D + +LSSS+S LPS L H Q IVAHPVNPPY
Sbjct: 92 QECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHPVNPPY 151
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+IPLVE+VP TS + RT +M +IG PV + EI GF LNR+Q+A+++E + LV
Sbjct: 152 YIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEAWRLVE 211
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
+G++S D+D VMS+GLG+RYAF+GPLET+HLN+
Sbjct: 212 EGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLNA 245
>sp|Q8SPX7|CRYL1_BOVIN Lambda-crystallin homolog OS=Bos taurus GN=CRYL1 PE=2 SV=3
Length = 321
Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 163/287 (56%), Gaps = 47/287 (16%)
Query: 11 GGFYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGC 66
G P G+ GLIG++WAM+FASA
Sbjct: 5 GSSAPGGVAVVGSGLIGRSWAMLFASA--------------------------------- 31
Query: 67 LKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT 126
G++V L+D+ Q+ +A +++ ++ G LKG L EEQ LISG
Sbjct: 32 ----------GFRVKLFDIEPRQVTDALVSLRKEMKMLELSGYLKGELGAEEQLSLISGC 81
Query: 127 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHR 186
LRE +E A+ +QE VPE L++K +++ +D + ILSSS+S LPS L H
Sbjct: 82 SDLREAVEGALHVQECVPENLELKRKLFAQLDKIADDHVILSSSSSCLLPSKLFAGLAHV 141
Query: 187 SQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 246
Q +VAHPVNPPY++PLVE+VP T+ + RT +M +G PV L EI GFALNR+
Sbjct: 142 KQCLVAHPVNPPYYVPLVELVPHPETAPATVDRTYALMRRVGQSPVRLLREIDGFALNRL 201
Query: 247 QFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293
Q+AV+ E + LV +GV+S D+D VMS+GLGLRYAF+GPLET+HLN+
Sbjct: 202 QYAVIAEAWRLVEEGVVSPGDLDLVMSDGLGLRYAFIGPLETMHLNA 248
>sp|Q8CUW0|LCDH_OCEIH L-carnitine dehydrogenase OS=Oceanobacillus iheyensis (strain DSM
14371 / JCM 11309 / KCTC 3954 / HTE831) GN=lcdH PE=3
SV=1
Length = 307
Score = 141 bits (356), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 73/182 (40%), Positives = 104/182 (57%), Gaps = 8/182 (4%)
Query: 118 EQFGLISGT--------PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169
EQ GL G + E ++DA IQESVPE ++KH V + ID F SNTI+ S
Sbjct: 52 EQLGLKEGASKDSLTFVDSIEEAVKDADLIQESVPERYELKHGVLKEIDRFAHSNTIIGS 111
Query: 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 229
STS P+ L H + +VAHP NP Y +PLVEIV T++ + R + M
Sbjct: 112 STSGIKPTDLQIGLNHPERLVVAHPFNPVYLLPLVEIVGGEATTKEITNRASVYYESLQM 171
Query: 230 KPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETI 289
KP+ + EI GF +R+ A+ E HLV+DG+ + +++D+ ++ G GLR+A +GP T
Sbjct: 172 KPMVIEKEIEGFVADRLMEALWREALHLVNDGIATTEEVDKAITYGAGLRWAQMGPFMTF 231
Query: 290 HL 291
HL
Sbjct: 232 HL 233
>sp|Q8CQB9|LCDH_STAES L-carnitine dehydrogenase OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=lcdH PE=3 SV=1
Length = 321
Score = 137 bits (344), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 103/182 (56%), Gaps = 8/182 (4%)
Query: 118 EQFGL--------ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169
EQ GL ++ TP L E ++DA IQE+VPE+ +IK V + ID + + S
Sbjct: 51 EQMGLAENASIQNLTFTPHLEEAVKDADHIQENVPEVEEIKDAVLKEIDFYAKPEATIGS 110
Query: 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGM 229
STS +PS L + +H + +VAHP +P Y +PLVEIVP TSE + +I IGM
Sbjct: 111 STSGIMPSELQANLSHPERLVVAHPFHPVYILPLVEIVPGKQTSEETTVKAEQIYESIGM 170
Query: 230 KPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETI 289
+ + EI G +R+ A+ E H+V+DG+ + +++D+ + GLRYA GP T
Sbjct: 171 DVLHVRHEIEGHIADRLMEALWRESLHIVNDGIATTEEVDKAFTHAAGLRYAQYGPFMTF 230
Query: 290 HL 291
HL
Sbjct: 231 HL 232
>sp|Q4V182|LCDH_BACCZ L-carnitine dehydrogenase OS=Bacillus cereus (strain ZK / E33L)
GN=lcdH PE=3 SV=1
Length = 326
Score = 134 bits (336), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/215 (34%), Positives = 113/215 (52%), Gaps = 5/215 (2%)
Query: 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA 136
GY V D + +I++ ++G +G+ F L L + + DA
Sbjct: 35 GYDVVATDPAKNAEVRMRQSIENAWPALEKQGLAEGASKDRLTFELD-----LAKAVADA 89
Query: 137 IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVN 196
IQE+VPE +K +V ID F S I++SSTS PS+L E + IVAHP N
Sbjct: 90 DLIQENVPEREALKRRVLAEIDHFSKSEAIIASSTSGLKPSILQEDCQRPERVIVAHPFN 149
Query: 197 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYH 256
P Y IPLVE++ TS I + + I MKP+ ++TE+ G +R+ A+ E H
Sbjct: 150 PVYLIPLVEVIGGKDTSPETINISEQFYQSIKMKPLVISTEVEGHIADRLMEAIWREALH 209
Query: 257 LVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
L++DGV + +++D + G GLR+A +GP T+HL
Sbjct: 210 LINDGVATTEEVDAAIIYGPGLRWALMGPFLTLHL 244
>sp|D7URM0|LCDH_PSESP L-carnitine dehydrogenase OS=Pseudomonas sp. GN=lcdH PE=1 SV=1
Length = 321
Score = 132 bits (332), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 96/163 (58%)
Query: 129 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 188
+ EC+ DA FIQES PE L +K ++ I + I++SSTS LPS E S+H +
Sbjct: 77 IEECVRDADFIQESAPERLDLKLDLHAKISAAAKPDAIIASSTSGLLPSEFYESSSHPER 136
Query: 189 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
+V HP NP Y +PLVEIV T+ I + I TE+GM+P+ + E+ GF +R+
Sbjct: 137 CVVGHPFNPVYLLPLVEIVGGRHTAPEAIEAAKGIYTELGMRPLHVRKEVPGFIADRLLE 196
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
A+ E HLV+DGV + +ID + G GLR++F+G T L
Sbjct: 197 ALWREALHLVNDGVATTGEIDDAIRFGAGLRWSFMGTFLTYTL 239
>sp|Q88R32|LCDH_PSEPK L-carnitine dehydrogenase OS=Pseudomonas putida (strain KT2440)
GN=lcdH PE=3 SV=1
Length = 321
Score = 131 bits (330), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/181 (38%), Positives = 100/181 (55%)
Query: 111 KGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170
K L+P + + EC+ +A FIQES PE L +K ++ I + I+ SS
Sbjct: 59 KQGLAPGASQDRLKFVATIEECVRNADFIQESAPERLDLKLDLHAKISAAAKPDAIIGSS 118
Query: 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 230
TS LPS E STH + +V HP NP Y +PLVEIV + TS I + I T +GM+
Sbjct: 119 TSGLLPSEFYESSTHPERCVVGHPFNPVYLLPLVEIVGGSRTSPEAIEAAKTIYTALGMR 178
Query: 231 PVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIH 290
P+ + E+ GF +R+ A+ E HLV+DGV + +ID + G GLR++F+G T
Sbjct: 179 PLHVRKEVPGFIADRLLEALWREALHLVNDGVATTGEIDDAIRFGAGLRWSFMGTFLTYT 238
Query: 291 L 291
L
Sbjct: 239 L 239
>sp|Q98CR3|LCDH_RHILO L-carnitine dehydrogenase OS=Rhizobium loti (strain MAFF303099)
GN=lcdH PE=3 SV=1
Length = 364
Score = 130 bits (326), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 107/209 (51%), Gaps = 6/209 (2%)
Query: 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA 136
G VS++D E ++ + Y Q + G L E G ++ + E + DA
Sbjct: 27 GIDVSIFDPDPEASRKVSEVMKGARRAYKQ--MVPGGLPKE---GKLTFAKTIAEAVADA 81
Query: 137 IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS-EHSTHRSQFIVAHPV 195
FIQESVPE L +KH+V ID +N I+ SSTS P+ + H + +V HP
Sbjct: 82 DFIQESVPERLDLKHRVLAEIDAHAPANAIVGSSTSGIKPTDMQVAMKKHPERLVVGHPF 141
Query: 196 NPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECY 255
NP Y +PLVEIV T I +EI IGMKPV + EI F +R+ A E
Sbjct: 142 NPVYLLPLVEIVGGDQTFPEAIEVAKEIYASIGMKPVVIRKEIEAFVGDRLLEAAWREAL 201
Query: 256 HLVHDGVLSAKDIDRVMSEGLGLRYAFLG 284
L+ DG+ + +++D +M G GLR+A +G
Sbjct: 202 WLIKDGICTVEELDDIMRYGFGLRWAQMG 230
>sp|Q4ZSC0|LCDH_PSEU2 L-carnitine dehydrogenase OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=lcdH PE=3 SV=1
Length = 318
Score = 129 bits (325), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 5/215 (2%)
Query: 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA 136
G V +D +N + Q+G + G+ +F + EC+ DA
Sbjct: 30 GLDVVAWDPAPGAEAALRNRVAKCWGALEQQGLVPGASQNRLRF-----VATVEECVRDA 84
Query: 137 IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVN 196
FIQES PE L++K ++ I SN ++ SSTS LPS + E S H + +V HP N
Sbjct: 85 DFIQESAPERLELKLDLHSRISAAARSNVLIGSSTSGLLPSDVYESSAHPERCVVGHPFN 144
Query: 197 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYH 256
P Y +PLVE+V T+ I ++ +GM+P+ + E+ GF +R+ A+ E H
Sbjct: 145 PVYLLPLVEVVGGKNTAPAAIQAAIKVYESLGMRPLHVRKEVPGFIADRLLEALWREALH 204
Query: 257 LVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
LV+DGV + +ID + G GLR++F+G T L
Sbjct: 205 LVNDGVATTGEIDDAIRFGAGLRWSFMGTFLTYTL 239
>sp|B1VLT7|LCDH_STRGG L-carnitine dehydrogenase OS=Streptomyces griseus subsp. griseus
(strain JCM 4626 / NBRC 13350) GN=lcdH PE=3 SV=1
Length = 335
Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/215 (30%), Positives = 106/215 (49%), Gaps = 5/215 (2%)
Query: 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA 136
GY V+ +D + + I Q G +G+ ++ T L E + DA
Sbjct: 45 GYDVTAWDPAPDAAVRLRRLIAAAWPALEQLGLAEGASQDR-----LTVTSTLEEAVADA 99
Query: 137 IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVN 196
F+QES PE L +K + +D + T+++SSTS + + + + + +V HP N
Sbjct: 100 QFVQESAPEKLDLKRDLLARLDAATPAGTVIASSTSGYPMTDMQTEAADPGRLVVGHPFN 159
Query: 197 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYH 256
PPY IPLVE+V T+ + G +T+ E+ GF NR+Q A+ E H
Sbjct: 160 PPYLIPLVEVVGGVRTAPAAVDWAARFYAVAGKSVITMEREVPGFIANRLQEALWREALH 219
Query: 257 LVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
+V +G + +ID ++EG GLR+A +GP+ T L
Sbjct: 220 MVANGEATVAEIDASITEGPGLRWAVMGPMLTFAL 254
>sp|Q5LTH8|LCDH_RUEPO L-carnitine dehydrogenase OS=Ruegeria pomeroyi (strain ATCC 700808
/ DSM 15171 / DSS-3) GN=lcdH PE=3 SV=1
Length = 487
Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/214 (36%), Positives = 109/214 (50%), Gaps = 9/214 (4%)
Query: 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQK--GCLKGSLSPEEQFGLISGTPVLRECLE 134
G+ V ++D E A+ I L + + G L PE G +S L E +
Sbjct: 24 GWDVRVFDPDPE----AERKIGEVLANARRSLPGLSDMPLPPE---GKLSFHADLGEAVT 76
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
A +IQESVPE L +K +VYR+I IL SSTS F PS L E + Q +V HP
Sbjct: 77 GAAWIQESVPERLDLKLKVYRSIQEACDPGAILGSSTSGFKPSELQEGALRPGQIVVTHP 136
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
NP Y +PL+E+V S +I R +EIM +G P+ + EI +R AV E
Sbjct: 137 FNPVYLLPLIELVTTPENSPEMIERAKEIMRGLGQFPLHVRKEIDAHIADRFLEAVWREA 196
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLET 288
LV DG+ + ++ID + G G+R+A +G ET
Sbjct: 197 LWLVKDGIATTEEIDEAIRMGFGIRWAQMGLFET 230
>sp|Q92NF5|LCDH_RHIME L-carnitine dehydrogenase OS=Rhizobium meliloti (strain 1021)
GN=lcdH PE=3 SV=1
Length = 496
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 83/272 (30%), Positives = 119/272 (43%), Gaps = 48/272 (17%)
Query: 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYK 79
G+IG AWA FA AG V+++D E
Sbjct: 13 GVIGGAWAARFALAGIDVNIFDPHPEAER------------------------------- 41
Query: 80 VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFI 139
++ E + NA+ G L +++P G + ++E +E +I
Sbjct: 42 -----IIGEVMANAERAY----------GML--TMAPLPPRGKFTFCRSIQEAVEGVDWI 84
Query: 140 QESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY 199
QESVPE L +K V ID + ++ SSTS LPS L H + VAHP NP Y
Sbjct: 85 QESVPERLPLKRGVINEIDAAARPDALIGSSTSGLLPSDLQAEMKHPERMFVAHPYNPVY 144
Query: 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259
+PLVE+V TS I R E + EIGMK V + EI F +R+ A+ E L+
Sbjct: 145 LLPLVELVGGRKTSPETIRRAEEAVAEIGMKGVVIAKEIEAFVGDRLLEALWREALWLIQ 204
Query: 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
D + + +D VM G+R+A +G ET +
Sbjct: 205 DDICDTETLDDVMRYSFGMRWAQMGLFETYRI 236
>sp|Q9HTH8|LCDH_PSEAE L-carnitine dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC
15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=lcdH PE=1
SV=1
Length = 321
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 91/163 (55%)
Query: 129 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 188
+ EC+ DA FIQES PE L +K ++ I + ++ SSTS LPS ++H +
Sbjct: 77 IEECVGDADFIQESAPERLDLKLDLHARISAAARPDVLIGSSTSGLLPSEFYAEASHPER 136
Query: 189 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
+V HP NP Y +PLVE+V T+ + + +GM+P+ + E+ GF +R+
Sbjct: 137 CLVGHPFNPVYLLPLVEVVGGERTAAEAVRAAMRVYESLGMRPLHVRKEVPGFIADRLLE 196
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
A+ E HLV+DGV + +ID + G GLR++F+G T L
Sbjct: 197 ALWREALHLVNDGVATTGEIDDAIRFGAGLRWSFMGTFLTYTL 239
>sp|Q7D3B2|LCDH_AGRT5 L-carnitine dehydrogenase OS=Agrobacterium tumefaciens (strain C58
/ ATCC 33970) GN=lcdH PE=3 SV=2
Length = 484
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/220 (34%), Positives = 116/220 (52%), Gaps = 23/220 (10%)
Query: 76 AGYKVSLYD-------VLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV 128
AG+ V+++D +++E + NA Q SP + G I+
Sbjct: 22 AGHDVTVFDPHPEANRIVTEVMANAAEAWGRLYQ------------SPLPKPGSINWASS 69
Query: 129 LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ 188
+ E + A +IQESVPE L +KH++ I+ S I++SSTS F PS L E S H +
Sbjct: 70 IAEAVAGADYIQESVPERLDLKHRIIAEIEATASPQAIIASSTSGFKPSELREGSVHSER 129
Query: 189 FIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
IVAHP NP Y +P+VE+V ++ R +I+ +GMKPV + EI +R+
Sbjct: 130 VIVAHPFNPVYLLPVVEVVGGGVAAQ----RASDILVSVGMKPVQIGREIDAHIGDRLLE 185
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLET 288
A+ E LV DG+ + ++ID ++ G GLR+A +G ET
Sbjct: 186 AIWREALWLVKDGIATTQEIDDIIRYGFGLRWAQMGLFET 225
>sp|D7UNT2|LCDH_RHISP L-carnitine dehydrogenase OS=Rhizobium sp. GN=lcdH PE=1 SV=1
Length = 497
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 96/179 (53%)
Query: 113 SLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172
+++P G ++ + E +E A +IQESVPE L++K V ID + ++ SSTS
Sbjct: 58 TMAPLPPKGKLTFCKSIEEAVEGADWIQESVPERLELKRGVITKIDAAARPDALIGSSTS 117
Query: 173 SFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 232
LPS L H + VAHP NP Y +PLVE+V TS+ I R + + +IGMK V
Sbjct: 118 GLLPSDLQSEMHHPERMFVAHPYNPVYLLPLVELVGGKKTSKATIERAMQGVEQIGMKGV 177
Query: 233 TLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
+ EI F +R+ A+ E L+ D + + +D VM G+R+A +G ET +
Sbjct: 178 VIAKEIEAFVGDRLLEALWREALWLIQDDICHTETLDNVMRYSFGMRWAQMGLFETYRI 236
>sp|Q93RX5|LCDH_STRCO L-carnitine dehydrogenase OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=lcdH PE=3 SV=1
Length = 318
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 108/215 (50%), Gaps = 5/215 (2%)
Query: 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA 136
GY+V+ +D + + ++ + G +G+ + ++ T L + + DA
Sbjct: 30 GYEVTAWDPAPDAEPRLRRLVEAAWPTLTRLGLAEGASTDR-----LTVTDTLEQAVADA 84
Query: 137 IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVN 196
F+QES PE L +K + +D +++SSTS + + + + S+ +V HP N
Sbjct: 85 EFVQESAPEKLDLKRDLLARLDAATPPGVVIASSTSGYPMTDMQTTAADPSRLVVGHPFN 144
Query: 197 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYH 256
PPY IPLVE+V T+ + G +T+ E+ GF NR+Q A+ E H
Sbjct: 145 PPYLIPLVEVVGGERTAAAAVAWASRFYEVAGKSVITMDNEVPGFIANRLQEALWREALH 204
Query: 257 LVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
+V G + +DID ++EG GLR+A +GP+ T L
Sbjct: 205 MVASGEATVRDIDLSITEGPGLRWAVMGPMLTFAL 239
>sp|D7B2S5|LCDH_NOCDD L-carnitine dehydrogenase OS=Nocardiopsis dassonvillei (strain ATCC
23218 / DSM 43111 / IMRU 509 / JCM 7437 / NCTC 10488)
GN=lcdH PE=3 SV=1
Length = 329
Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 5/215 (2%)
Query: 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA 136
GY+V +D + + + + G +G+ + L E + DA
Sbjct: 35 GYRVVAWDPAPDAESRLRGLVSSAWPALEELGPAEGA-----SMANLRVVDTLAEAVADA 89
Query: 137 IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVN 196
F+QES PE L +K + ID +++SSTS + S + + + +V HP N
Sbjct: 90 DFVQESAPERLDLKIDLLAEIDAATPEGVVIASSTSGYSMSEMQVGARTPGRLVVGHPFN 149
Query: 197 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYH 256
PPY +PLVE+V + + + G +T+ E+ GF NRIQ A E H
Sbjct: 150 PPYLVPLVEVVGGERSERWAVDWASDFYRAAGKSVITMERELPGFIGNRIQEAAWREALH 209
Query: 257 LVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
+V +G + + ID M+ G GLR+AF GP T HL
Sbjct: 210 MVAEGEATVEQIDLAMTSGPGLRWAFFGPCLTFHL 244
>sp|Q62DG4|LCDH_BURMA L-carnitine dehydrogenase OS=Burkholderia mallei (strain ATCC
23344) GN=lcdH PE=3 SV=2
Length = 321
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 108/209 (51%), Gaps = 2/209 (0%)
Query: 84 DVLS-EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQES 142
DVL+ + E+A+ ++ +++ + L+P + P + C+ DA F+QES
Sbjct: 32 DVLAWDPAEDAEMQLRANVEN-AWPALERAGLAPGASPARLHFVPTIEACVADADFVQES 90
Query: 143 VPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP 202
PE +K +++ I + I++SSTS LP+ + + IV HP NP Y +P
Sbjct: 91 APEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYARAHRPERCIVGHPFNPVYLLP 150
Query: 203 LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGV 262
LVE++ T+ + I +GM+P+ + E+ GF +R+ A+ E HLV +GV
Sbjct: 151 LVEVLGGERTAPDTVDAALGIYRALGMRPLRVRKEVPGFIADRLLEALWREALHLVDEGV 210
Query: 263 LSAKDIDRVMSEGLGLRYAFLGPLETIHL 291
+ +ID + G G+R++F+G T L
Sbjct: 211 ATTGEIDDAIRFGAGIRWSFMGTFLTYTL 239
>sp|Q63MT0|LCDH_BURPS L-carnitine dehydrogenase OS=Burkholderia pseudomallei (strain
K96243) GN=lcdH PE=3 SV=1
Length = 321
Score = 110 bits (274), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 94/181 (51%)
Query: 111 KGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170
+ L+P + P + C+ DA F+QES PE +K +++ I + I++SS
Sbjct: 59 RAGLAPGASPARLHFVPTIEACVADADFVQESAPEREALKLELHERISRAAKPDAIIASS 118
Query: 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK 230
TS LP+ + + IV HP NP Y +PLVE++ T+ + I +GM+
Sbjct: 119 TSGLLPTDFYARAHRPERCIVGHPFNPVYLLPLVEVLGGERTAPDTVDAALGIYRALGMR 178
Query: 231 PVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIH 290
P+ + E+ GF +R+ A+ E HLV +GV + +ID + G G+R++F+G T
Sbjct: 179 PLRVRKEVPGFIADRLLEALWREALHLVDEGVATTGEIDDAIRFGAGIRWSFMGTFLTYT 238
Query: 291 L 291
L
Sbjct: 239 L 239
>sp|P77851|HBD_THETC 3-hydroxybutyryl-CoA dehydrogenase OS=Thermoanaerobacterium
thermosaccharolyticum (strain ATCC 7956 / DSM 571 / NCIB
9385 / NCA 3814) GN=hbd PE=3 SV=2
Length = 281
Score = 95.9 bits (237), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 107/213 (50%), Gaps = 6/213 (2%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G++V L D+ + +E TI+ LQ KG + E I GT L +
Sbjct: 21 AQNGFEVILRDIDMKFVEKGFGTIEKNLQRNVDKGKITAD-EKNEILSRIRGTTNLEDAK 79
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 193
E A F+ E+ E + +K Q+++ +D TIL+S+TSS + ++ + + I H
Sbjct: 80 E-ADFVVEAAIENMDLKKQIFKELDEICKMETILASNTSSLSITEIASATKRPEKVIGMH 138
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
NP + LVE++ TSE+ RE+ ++ P+ + E GF +NRI ++NE
Sbjct: 139 FFNPVPVMKLVEVIKGLKTSEQTFNVVRELALKVDKTPIEV-KEAPGFVVNRILIPMINE 197
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPL 286
++ DGV +A+DID M LG + +GPL
Sbjct: 198 AIGILADGVATAEDIDEAMK--LGANHP-IGPL 227
>sp|Q9RVG1|HBD_DEIRA Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Deinococcus
radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 /
LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422)
GN=hbd PE=3 SV=1
Length = 278
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 114/216 (52%), Gaps = 13/216 (6%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A +G+ V ++D E ++ K I+ +L H+KG L + +PE G I T L++
Sbjct: 20 AQSGFDVVVHDQKQEFLDRGKGVIEKSLGKLHEKGKL--TDAPETVLGRIHFTTDLQD-F 76
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 193
D + E++ E QIK+ +++ + + IL+S+TSS + L+ S +QFI H
Sbjct: 77 ADCDLVVEAIVENQQIKNDLFKQLGQIVKPEGILASNTSSIPITALATASGRPAQFIGMH 136
Query: 194 PVNPPYFIPLVEIVPAAWTSE---RVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
+NP + LVE++ TS+ R++T T E ++G P++ + GF NRI +
Sbjct: 137 FMNPVPLMQLVEVIRGYQTSDETARIVTETAE---KLGKTPLS-CNDFPGFVSNRILMPM 192
Query: 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPL 286
LNE V +GV + ID +M LG+ + +GPL
Sbjct: 193 LNEAIQCVMEGVAEPEAIDGIMK--LGMNHP-MGPL 225
>sp|P52041|HBD_CLOAB 3-hydroxybutyryl-CoA dehydrogenase OS=Clostridium acetobutylicum
(strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM
B-1787) GN=hbd PE=3 SV=2
Length = 282
Score = 88.6 bits (218), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 6/214 (2%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A G++V L D+ E ++ + I L +KG ++ + + E ISGT L
Sbjct: 21 AAKGFEVVLRDIKDEFVDRGLDFINKNLSKLVKKGKIEEA-TKVEILTRISGTVDLNMAA 79
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 193
+ + I+ +V E + IK Q++ +D TIL+S+TSS + ++ + + I H
Sbjct: 80 DCDLVIEAAV-ERMDIKKQIFADLDNICKPETILASNTSSLSITEVASATKRPDKVIGMH 138
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
NP + LVE++ TS+ +E IG PV + E GF +NRI ++NE
Sbjct: 139 FFNPAPVMKLVEVIRGIATSQETFDAVKETSIAIGKDPVEV-AEAPGFVVNRILIPMINE 197
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
++ +G+ S +DID+ M LG + +GPLE
Sbjct: 198 AVGILAEGIASVEDIDKAMK--LGANHP-MGPLE 228
>sp|Q68WH7|FAD3_RICTY Putative fatty acid oxidation complex trifunctional enzyme
OS=Rickettsia typhi (strain ATCC VR-144 / Wilmington)
GN=RT0547 PE=3 SV=1
Length = 720
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 102/207 (49%), Gaps = 2/207 (0%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A++ ++V L D+L + + +++ +++ H++ S + F I + +
Sbjct: 25 ANSSHRVVLLDILDKDSNDPNKIVKNAVKNLHRQKLPPLSYPDKVNFITIGNLEHDLDLI 84
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH--STHRSQFIV 191
++ + E + E L IKHQ+Y I ++ +TI++S+TS+ L E+ + +S+FI+
Sbjct: 85 KECNLVIEVIVEKLDIKHQLYNKIIPYLKEDTIIASNTSTLPLKKLKENLPNNIKSRFII 144
Query: 192 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVL 251
H NPP ++ LVE++ + VI + +T+I K + + GF NR+ +L
Sbjct: 145 THFFNPPRYMELVELIIDNTIKDEVIEKISVFLTKILGKTIIKCNDTPGFIANRVGCFLL 204
Query: 252 NECYHLVHDGVLSAKDIDRVMSEGLGL 278
H L ID++ S LGL
Sbjct: 205 ELVAHKAIAQNLDFVTIDQIFSRCLGL 231
>sp|P00348|HCDH_PIG Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Sus scrofa
GN=HADH PE=1 SV=2
Length = 314
Score = 78.6 bits (192), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ IS +
Sbjct: 47 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSSISTSTDA 106
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQF 189
+ + E++ E L++K ++++ +D F + +TI +S+TSS + L+ +T + +F
Sbjct: 107 ASVVHSTDLVVEAIVENLKVKSELFKRLDKFAAEHTIFASNTSSLQITSLANATTRQDRF 166
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE+V TS++ + + +G PV+ + GF +NR+
Sbjct: 167 AGLHFFNPVPLMKLVEVVKTPMTSQKTLESLVDFSKTLGKHPVS-CKDTPGFIVNRLLVP 225
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 226 YLIEAVRLYERGDASKEDIDTAMKLGAGYP---MGPFE 260
>sp|Q16836|HCDH_HUMAN Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Homo sapiens
GN=HADH PE=1 SV=3
Length = 314
Score = 76.6 bits (187), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ I+ +
Sbjct: 47 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENLKAGDEFVEKTLSTIATSTDA 106
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQF 189
+ + E++ E L++K+++++ +D F + +TI +S+TSS + ++ +T + +F
Sbjct: 107 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRF 166
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 167 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVS-CKDTPGFIVNRLLVP 225
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 226 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 260
>sp|P45856|HBD_BACSU Probable 3-hydroxybutyryl-CoA dehydrogenase OS=Bacillus subtilis
(strain 168) GN=mmgB PE=2 SV=1
Length = 287
Score = 75.9 bits (185), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 106/216 (49%), Gaps = 8/216 (3%)
Query: 72 SPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE 131
+ A AG+ V +YDV E E ++ L +KG + + IS + L E
Sbjct: 21 TAADAGFYVRMYDVNPEAAEAGLKRLKKQLARDAEKG-KRTETEVKSVINRISISQTLEE 79
Query: 132 CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIV 191
E A + E++ E + K ++++ +D +TIL+S+TSS LP T+R Q ++
Sbjct: 80 A-EHADIVIEAIAENMAAKTEMFKTLDRICPPHTILASNTSS-LPITEIAAVTNRPQRVI 137
Query: 192 A-HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +NP + LVE++ TSE + ++G V + + GF NR+ +
Sbjct: 138 GMHFMNPVPVMKLVEVIRGLATSEETALDVMALAEKMGKTAVEV-NDFPGFVSNRVLLPM 196
Query: 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPL 286
+NE + V++GV + ID VM LG+ + +GPL
Sbjct: 197 INEAIYCVYEGVAKPEAIDEVMK--LGMNHP-MGPL 229
>sp|Q9ZCZ1|FAD3_RICPR Putative fatty acid oxidation complex trifunctional enzyme
OS=Rickettsia prowazekii (strain Madrid E) GN=RP560 PE=3
SV=1
Length = 720
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 103/207 (49%), Gaps = 2/207 (0%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
A++ ++V L D+L + + +++++++ H++ S + F I + +
Sbjct: 25 ANSSHQVVLLDILDKDSNDPNKIVKNSVKNLHKQKLSPLSFPDKVNFITIGNLEHDLDLI 84
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEH--STHRSQFIV 191
++ + E + E L+IKHQ+Y I ++ + I++S+TS+ L + + +S+F++
Sbjct: 85 KECNLVIEVIVEKLEIKHQLYNKIIPYLKEDAIIASNTSTLPLKKLKVNLPNNIKSRFVI 144
Query: 192 AHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVL 251
H NPP ++ LVE++ + VI + +T++ K + + GF NR+ +L
Sbjct: 145 THFFNPPRYMELVELIIDHTIKDEVIEKVSVFLTKMLGKTIIKCNDTPGFIANRVGCFLL 204
Query: 252 NECYHLVHDGVLSAKDIDRVMSEGLGL 278
H L+ ID++ S LGL
Sbjct: 205 ELVVHKAIAQNLNFVTIDQIFSRCLGL 231
>sp|B6I6Q4|FADJ_ECOSE Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain SE11) GN=fadJ PE=3 SV=1
Length = 714
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ +G
Sbjct: 503 INEAIRMLTEG 513
>sp|Q32DJ4|FADJ_SHIDS Fatty acid oxidation complex subunit alpha OS=Shigella dysenteriae
serotype 1 (strain Sd197) GN=fadJ PE=3 SV=1
Length = 714
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ +G
Sbjct: 503 INEAIRMLTEG 513
>sp|A7ZPF8|FADJ_ECO24 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=fadJ PE=3 SV=1
Length = 714
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ +G
Sbjct: 503 INEAIRMLTEG 513
>sp|B1IXA5|FADJ_ECOLC Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=fadJ PE=3 SV=1
Length = 714
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ +G
Sbjct: 503 INEAIRMLTEG 513
>sp|Q8XCP2|FADJ_ECO57 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O157:H7 GN=fadJ PE=3 SV=1
Length = 714
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGIPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ +G
Sbjct: 503 INEAIRMLTEG 513
>sp|B5YXY4|FADJ_ECO5E Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=fadJ PE=3 SV=1
Length = 714
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGIPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ +G
Sbjct: 503 INEAIRMLTEG 513
>sp|Q61425|HCDH_MOUSE Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Mus musculus
GN=Hadh PE=1 SV=2
Length = 314
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 103/220 (46%), Gaps = 8/220 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLK----GSLSPEEQFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + G E+ +S +
Sbjct: 47 AATGHTVVLVDQTEDILAKSKKGIEESLKRMAKKKFTENPKAGDEFVEKTLSCLSTSTDA 106
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQF 189
+ + E++ E L++K+++++ +D F + +TI +S+TSS + ++ +T + +F
Sbjct: 107 ASVVHSTDLVVEAIVENLKLKNELFQRLDKFAAEHTIFASNTSSLQITNIANATTRQDRF 166
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 167 AGLHFFNPVPMMKLVEVIKTPMTSQKTFESLVDFCKTLGKHPVS-CKDTPGFIVNRLLVP 225
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETI 289
L E L G S +DID M G G +GP E +
Sbjct: 226 YLIEAVRLHERGDASKEDIDTAMKLGAGYP---MGPFELL 262
>sp|B7M6M2|FADJ_ECO8A Fatty acid oxidation complex subunit alpha OS=Escherichia coli O8
(strain IAI1) GN=fadJ PE=3 SV=1
Length = 714
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNSAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ +G
Sbjct: 503 INEAIRMLTEG 513
>sp|B7N5V2|FADJ_ECOLU Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=fadJ PE=3 SV=1
Length = 714
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S + Q LISGT R
Sbjct: 326 VTACKAGLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDRQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ +G
Sbjct: 503 INEAIRMLTEG 513
>sp|B2TWV4|FADJ_SHIB3 Fatty acid oxidation complex subunit alpha OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=fadJ PE=3
SV=1
Length = 714
Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ G
Sbjct: 503 INEAIRMLTKG 513
>sp|Q31YB7|FADJ_SHIBS Fatty acid oxidation complex subunit alpha OS=Shigella boydii
serotype 4 (strain Sb227) GN=fadJ PE=3 SV=1
Length = 714
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ G
Sbjct: 503 INEAIRMLTKG 513
>sp|P77399|FADJ_ECOLI Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain K12) GN=fadJ PE=1 SV=1
Length = 714
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGIPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ G
Sbjct: 503 INEAIRMLTQG 513
>sp|B1X9L4|FADJ_ECODH Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain K12 / DH10B) GN=fadJ PE=3 SV=1
Length = 714
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGIPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ G
Sbjct: 503 INEAIRMLTQG 513
>sp|C4ZVN2|FADJ_ECOBW Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=fadJ PE=3 SV=1
Length = 714
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGIPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHATRPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ G
Sbjct: 503 INEAIRMLTQG 513
>sp|Q9WVK7|HCDH_RAT Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=Hadh PE=2 SV=1
Length = 314
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE----QFGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + + +E +S +
Sbjct: 47 AATGHTVVLVDQTEDILAKSKKGIEESLKRMAKKKFTENPKAADEFVEKTLSSLSTSTDA 106
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQF 189
+ + E++ E L++K+++++ +D F + +TI +S+TSS + ++ +T + +F
Sbjct: 107 ASVVHSTDLVVEAIVENLKLKNELFQRLDKFAAEHTIFASNTSSLQITNIANATTRQDRF 166
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 167 AGLHFFNPVPMMKLVEVIKTPMTSQKTFESLVDFCKTLGKHPVS-CKDTPGFIVNRLLVP 225
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 226 YLIEAIRLHERGDASKEDIDTAMKLGAGYP---MGPFE 260
>sp|B7LBJ5|FADJ_ECO55 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
(strain 55989 / EAEC) GN=fadJ PE=3 SV=1
Length = 714
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 62/214 (28%), Positives = 110/214 (51%), Gaps = 10/214 (4%)
Query: 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDA 136
G V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 332 GLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYRGFAHRD 390
Query: 137 IFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVN 196
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+T Q I H +
Sbjct: 391 LII-EAVFENLELKQQMVAEVEQNSAAHTIFASNTSSLPIGDIAAHATRPEQVIGLHFFS 449
Query: 197 PPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYH 256
P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI +NE
Sbjct: 450 PVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPYINEAIR 508
Query: 257 LVHDGVLSAKDIDRVMSEGLGLRYAF-LGPLETI 289
++ +G + ID V+ +++ F +GP++ +
Sbjct: 509 MLTEGE-RVEHIDAVL-----VKFGFPVGPIQLL 536
>sp|Q8FFG4|FADJ_ECOL6 Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=fadJ PE=3
SV=1
Length = 714
Score = 73.2 bits (178), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 98/191 (51%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS + ++ H+ Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIADIAAHAARPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ +G
Sbjct: 503 INEAIRMLTEG 513
>sp|A8A2L0|FADJ_ECOHS Fatty acid oxidation complex subunit alpha OS=Escherichia coli
O9:H4 (strain HS) GN=fadJ PE=3 SV=1
Length = 714
Score = 72.8 bits (177), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 3/191 (1%)
Query: 71 LSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR 130
++ AG V + D+ + I +A L+ ++ LK S ++Q LISGT R
Sbjct: 326 VTACKAGLPVRIKDINPQGINHALKYSWDQLEGKVRRRHLKAS-ERDKQLALISGTTDYR 384
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
+ I E+V E L++K Q+ ++ +++TI +S+TSS ++ H+ Q I
Sbjct: 385 GFAHRDLII-EAVFENLELKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAAHAARPEQVI 443
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H +P +PLVEI+P A TS + I T ++ + G P+ + + GF +NRI
Sbjct: 444 GLHFFSPVEKMPLVEIIPHAGTSAQTIATTVKLAKKQGKTPIVVRDKA-GFYVNRILAPY 502
Query: 251 LNECYHLVHDG 261
+NE ++ +G
Sbjct: 503 INEAIRMLTEG 513
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,107,760
Number of Sequences: 539616
Number of extensions: 4257763
Number of successful extensions: 11337
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 10962
Number of HSP's gapped (non-prelim): 285
length of query: 294
length of database: 191,569,459
effective HSP length: 116
effective length of query: 178
effective length of database: 128,974,003
effective search space: 22957372534
effective search space used: 22957372534
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)