Query psy13746
Match_columns 294
No_of_seqs 208 out of 1455
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 19:27:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13746.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13746hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK07066 3-hydroxybutyryl-CoA 100.0 5.7E-51 1.2E-55 371.4 28.4 236 11-294 5-242 (321)
2 COG1250 FadB 3-hydroxyacyl-CoA 100.0 3.5E-51 7.6E-56 367.3 25.0 234 11-293 1-236 (307)
3 PRK07819 3-hydroxybutyryl-CoA 100.0 3.6E-47 7.8E-52 343.5 27.1 234 12-294 4-241 (286)
4 KOG2304|consensus 100.0 9.3E-49 2E-53 329.1 14.3 235 12-293 10-250 (298)
5 PRK11730 fadB multifunctional 100.0 7.2E-46 1.6E-50 371.2 26.9 233 11-293 311-545 (715)
6 TIGR02437 FadB fatty oxidation 100.0 8E-46 1.7E-50 370.2 26.9 233 11-293 311-545 (714)
7 PRK08293 3-hydroxybutyryl-CoA 100.0 2.5E-45 5.3E-50 332.2 27.5 237 11-293 1-239 (287)
8 TIGR02279 PaaC-3OHAcCoADH 3-hy 100.0 4.5E-45 9.8E-50 351.7 26.8 233 12-293 4-238 (503)
9 TIGR02441 fa_ox_alpha_mit fatt 100.0 5.5E-45 1.2E-49 365.0 25.6 233 10-293 332-566 (737)
10 PRK08268 3-hydroxy-acyl-CoA de 100.0 3.1E-44 6.8E-49 346.6 27.4 235 11-294 5-241 (507)
11 TIGR02440 FadJ fatty oxidation 100.0 2.1E-44 4.7E-49 359.8 26.2 232 12-294 303-537 (699)
12 PRK11154 fadJ multifunctional 100.0 7E-44 1.5E-48 356.8 26.1 232 12-294 308-542 (708)
13 PRK09260 3-hydroxybutyryl-CoA 100.0 2.6E-43 5.7E-48 319.1 26.6 233 13-293 1-235 (288)
14 PRK08269 3-hydroxybutyryl-CoA 100.0 3.4E-43 7.3E-48 321.0 26.3 234 22-293 1-236 (314)
15 PRK05808 3-hydroxybutyryl-CoA 100.0 5.4E-43 1.2E-47 316.2 26.3 234 11-293 1-236 (282)
16 PRK06035 3-hydroxyacyl-CoA deh 100.0 7.5E-43 1.6E-47 316.6 26.4 237 11-293 1-239 (291)
17 PRK07530 3-hydroxybutyryl-CoA 100.0 6.5E-42 1.4E-46 310.6 26.8 235 11-294 2-238 (292)
18 PLN02545 3-hydroxybutyryl-CoA 100.0 1.5E-41 3.3E-46 308.6 26.8 234 12-294 3-238 (295)
19 PRK06129 3-hydroxyacyl-CoA deh 100.0 1E-39 2.2E-44 298.3 27.8 236 13-292 2-239 (308)
20 KOG2305|consensus 100.0 2E-40 4.3E-45 279.1 16.2 239 11-292 1-241 (313)
21 PRK07531 bifunctional 3-hydrox 100.0 7.8E-39 1.7E-43 309.3 26.4 233 13-293 4-238 (495)
22 PRK06130 3-hydroxybutyryl-CoA 100.0 1E-37 2.2E-42 285.4 27.7 233 13-294 4-238 (311)
23 PF02737 3HCDH_N: 3-hydroxyacy 100.0 1.3E-36 2.8E-41 256.9 18.8 177 15-237 1-179 (180)
24 KOG1683|consensus 99.9 3.7E-28 8.1E-33 218.4 9.3 222 22-293 1-222 (380)
25 COG2084 MmsB 3-hydroxyisobutyr 99.9 1.6E-23 3.5E-28 186.8 19.8 193 14-281 1-215 (286)
26 KOG0409|consensus 99.9 2.1E-20 4.5E-25 164.6 19.6 195 13-281 35-250 (327)
27 TIGR01505 tartro_sem_red 2-hyd 99.9 4.8E-20 1E-24 167.2 19.5 191 15-280 1-212 (291)
28 PRK08268 3-hydroxy-acyl-CoA de 99.8 1.4E-20 3E-25 182.3 14.9 131 160-294 337-467 (507)
29 PRK11559 garR tartronate semia 99.8 1.6E-19 3.5E-24 164.1 19.8 191 14-279 3-214 (296)
30 PRK15461 NADH-dependent gamma- 99.8 2.8E-18 6.1E-23 156.0 20.9 192 14-277 2-211 (296)
31 TIGR01692 HIBADH 3-hydroxyisob 99.8 6.6E-18 1.4E-22 153.0 20.2 184 20-280 5-209 (288)
32 PRK15059 tartronate semialdehy 99.8 9.6E-18 2.1E-22 152.2 19.8 192 15-280 2-212 (292)
33 PRK07417 arogenate dehydrogena 99.8 1.5E-17 3.2E-22 150.1 17.3 160 15-244 2-175 (279)
34 PLN02350 phosphogluconate dehy 99.8 1.1E-16 2.3E-21 153.7 20.9 202 12-280 5-235 (493)
35 PRK11199 tyrA bifunctional cho 99.7 7.5E-17 1.6E-21 151.1 16.8 168 12-268 97-277 (374)
36 PLN02858 fructose-bisphosphate 99.7 2.4E-16 5.2E-21 167.3 21.6 191 14-280 5-220 (1378)
37 PRK06545 prephenate dehydrogen 99.7 1.6E-16 3.5E-21 148.2 18.0 176 14-255 1-195 (359)
38 PRK12490 6-phosphogluconate de 99.7 1.1E-15 2.4E-20 139.2 21.5 191 15-279 2-217 (299)
39 PF03446 NAD_binding_2: NAD bi 99.7 1E-16 2.2E-21 133.3 12.8 150 13-235 1-162 (163)
40 PRK07679 pyrroline-5-carboxyla 99.7 2.7E-16 5.9E-21 141.9 16.5 210 11-292 1-231 (279)
41 PRK08655 prephenate dehydrogen 99.7 6.1E-16 1.3E-20 147.6 18.9 185 14-268 1-198 (437)
42 PLN02688 pyrroline-5-carboxyla 99.7 9.4E-16 2E-20 137.2 18.9 190 14-276 1-205 (266)
43 COG0287 TyrA Prephenate dehydr 99.7 1.3E-15 2.9E-20 136.5 18.9 170 13-248 3-183 (279)
44 PRK09599 6-phosphogluconate de 99.7 2.7E-15 5.9E-20 136.8 21.2 185 15-276 2-214 (301)
45 PTZ00142 6-phosphogluconate de 99.7 2.2E-15 4.8E-20 144.4 21.3 189 14-273 2-219 (470)
46 TIGR00872 gnd_rel 6-phosphoglu 99.7 6.5E-15 1.4E-19 134.1 20.8 189 15-276 2-212 (298)
47 PRK08507 prephenate dehydrogen 99.7 6.6E-15 1.4E-19 132.5 19.0 157 15-244 2-176 (275)
48 TIGR03026 NDP-sugDHase nucleot 99.7 4.4E-15 9.5E-20 141.0 18.4 209 15-275 2-246 (411)
49 PRK11064 wecC UDP-N-acetyl-D-m 99.7 4.2E-15 9.1E-20 141.1 17.8 209 11-274 1-249 (415)
50 TIGR00873 gnd 6-phosphoglucona 99.6 1.1E-14 2.3E-19 139.7 19.5 197 15-279 1-225 (467)
51 PRK11880 pyrroline-5-carboxyla 99.6 1.7E-14 3.7E-19 129.1 19.7 189 13-274 2-204 (267)
52 PRK07502 cyclohexadienyl dehyd 99.6 1.6E-14 3.5E-19 132.0 19.7 167 12-247 5-190 (307)
53 PLN02858 fructose-bisphosphate 99.6 1.1E-14 2.3E-19 154.8 21.0 194 13-280 324-540 (1378)
54 PRK15057 UDP-glucose 6-dehydro 99.6 6.3E-15 1.4E-19 138.5 17.1 202 15-273 2-233 (388)
55 PLN02256 arogenate dehydrogena 99.6 3.1E-14 6.8E-19 129.7 18.4 167 10-247 33-215 (304)
56 PRK12557 H(2)-dependent methyl 99.6 6E-14 1.3E-18 129.6 20.4 184 21-270 30-234 (342)
57 PF02153 PDH: Prephenate dehyd 99.6 4E-14 8.7E-19 126.3 15.8 152 26-246 1-168 (258)
58 PRK12491 pyrroline-5-carboxyla 99.6 1.3E-13 2.9E-18 123.8 19.1 151 14-234 3-160 (272)
59 PRK09287 6-phosphogluconate de 99.6 1.6E-13 3.6E-18 131.1 20.0 187 22-280 1-218 (459)
60 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.6 9.5E-15 2.1E-19 141.5 11.1 90 200-293 376-465 (503)
61 PRK08818 prephenate dehydrogen 99.6 7.6E-14 1.6E-18 129.8 16.6 149 14-246 5-165 (370)
62 COG1004 Ugd Predicted UDP-gluc 99.6 3E-13 6.5E-18 124.2 18.7 208 14-273 1-242 (414)
63 PRK15182 Vi polysaccharide bio 99.6 3E-13 6.5E-18 128.7 19.4 203 14-275 7-246 (425)
64 PRK14806 bifunctional cyclohex 99.5 1E-12 2.2E-17 133.5 18.8 163 13-243 3-184 (735)
65 PRK00094 gpsA NAD(P)H-dependen 99.5 2.4E-12 5.1E-17 118.3 18.8 198 14-273 2-240 (325)
66 PRK06476 pyrroline-5-carboxyla 99.5 3.6E-12 7.9E-17 113.6 17.7 181 15-273 2-194 (258)
67 PLN02712 arogenate dehydrogena 99.4 7.8E-12 1.7E-16 124.9 18.8 162 12-244 368-545 (667)
68 PRK07634 pyrroline-5-carboxyla 99.4 1.3E-11 2.8E-16 109.0 18.3 191 11-273 2-207 (245)
69 COG0677 WecC UDP-N-acetyl-D-ma 99.4 6.5E-11 1.4E-15 108.6 21.3 206 14-273 10-251 (436)
70 COG0345 ProC Pyrroline-5-carbo 99.4 2.8E-11 6E-16 107.5 18.1 149 14-234 2-157 (266)
71 PRK14618 NAD(P)H-dependent gly 99.4 3.7E-12 8E-17 117.5 12.8 197 14-274 5-240 (328)
72 PRK07680 late competence prote 99.4 3.6E-11 7.8E-16 108.1 18.7 150 15-235 2-158 (273)
73 TIGR01724 hmd_rel H2-forming N 99.4 1.4E-11 2.9E-16 110.9 15.6 153 21-238 30-196 (341)
74 PLN02353 probable UDP-glucose 99.4 2.6E-11 5.5E-16 116.6 18.5 209 14-274 2-253 (473)
75 PRK06928 pyrroline-5-carboxyla 99.4 7.4E-11 1.6E-15 106.4 19.6 151 14-234 2-160 (277)
76 PRK05479 ketol-acid reductoiso 99.4 5.1E-11 1.1E-15 109.1 18.2 184 13-267 17-223 (330)
77 PLN02712 arogenate dehydrogena 99.4 6.7E-11 1.5E-15 118.2 19.9 163 14-247 53-231 (667)
78 PRK14619 NAD(P)H-dependent gly 99.3 2.1E-11 4.4E-16 111.6 11.9 168 14-270 5-213 (308)
79 PTZ00431 pyrroline carboxylate 99.2 6.2E-10 1.4E-14 99.5 17.9 143 14-234 4-153 (260)
80 PF03721 UDPG_MGDP_dh_N: UDP-g 99.2 2.6E-11 5.6E-16 102.9 7.7 118 14-180 1-128 (185)
81 COG0240 GpsA Glycerol-3-phosph 99.2 2.4E-10 5.2E-15 103.6 13.7 164 14-240 2-181 (329)
82 PF01210 NAD_Gly3P_dh_N: NAD-d 99.2 1.1E-10 2.4E-15 96.4 9.9 104 15-174 1-106 (157)
83 PF00725 3HCDH: 3-hydroxyacyl- 99.2 1.2E-11 2.5E-16 93.9 3.7 51 240-293 1-51 (97)
84 PRK08229 2-dehydropantoate 2-r 99.2 1.3E-09 2.7E-14 101.0 17.0 193 14-267 3-235 (341)
85 cd05297 GH4_alpha_glucosidase_ 99.2 6.7E-12 1.5E-16 119.5 1.7 156 15-230 2-184 (423)
86 TIGR01915 npdG NADPH-dependent 99.2 3.4E-09 7.3E-14 92.3 17.6 161 14-236 1-189 (219)
87 COG0362 Gnd 6-phosphogluconate 99.1 3.8E-09 8.1E-14 96.9 17.0 197 12-274 2-221 (473)
88 TIGR00465 ilvC ketol-acid redu 99.1 7.3E-09 1.6E-13 94.8 18.7 146 14-230 4-161 (314)
89 COG1023 Gnd Predicted 6-phosph 99.1 1.9E-08 4E-13 86.7 18.9 189 14-276 1-213 (300)
90 PRK06444 prephenate dehydrogen 99.0 9.1E-09 2E-13 87.9 13.6 98 134-247 30-132 (197)
91 PF10727 Rossmann-like: Rossma 99.0 3.4E-09 7.3E-14 84.2 9.4 113 12-194 9-127 (127)
92 PRK12439 NAD(P)H-dependent gly 99.0 4.9E-08 1.1E-12 90.6 17.9 169 12-240 6-187 (341)
93 PF03807 F420_oxidored: NADP o 99.0 2.6E-09 5.6E-14 80.5 7.6 88 15-172 1-95 (96)
94 PTZ00345 glycerol-3-phosphate 98.9 4.5E-08 9.7E-13 91.3 16.8 170 13-240 11-206 (365)
95 TIGR00112 proC pyrroline-5-car 98.9 5.3E-08 1.1E-12 86.3 16.3 109 124-235 32-141 (245)
96 TIGR03376 glycerol3P_DH glycer 98.9 9.9E-08 2.2E-12 88.4 17.3 162 15-240 1-197 (342)
97 COG4007 Predicted dehydrogenas 98.9 2.3E-07 5E-12 80.7 16.8 151 22-237 32-196 (340)
98 PTZ00082 L-lactate dehydrogena 98.8 1.1E-08 2.5E-13 93.9 9.2 123 14-193 7-153 (321)
99 PRK14620 NAD(P)H-dependent gly 98.8 3E-07 6.6E-12 84.7 17.9 104 15-174 2-109 (326)
100 COG2085 Predicted dinucleotide 98.8 2.2E-07 4.7E-12 79.3 15.0 152 13-236 1-180 (211)
101 cd01339 LDH-like_MDH L-lactate 98.8 1.8E-08 3.8E-13 92.0 8.5 121 16-193 1-140 (300)
102 PRK06223 malate dehydrogenase; 98.7 5.3E-08 1.1E-12 89.0 9.9 123 13-192 2-143 (307)
103 PTZ00117 malate dehydrogenase; 98.7 6.8E-08 1.5E-12 88.8 10.1 123 14-193 6-147 (319)
104 TIGR02441 fa_ox_alpha_mit fatt 98.7 2.9E-08 6.2E-13 100.7 7.2 76 218-294 625-701 (737)
105 PRK12921 2-dehydropantoate 2-r 98.7 1.1E-06 2.5E-11 79.9 16.2 199 14-273 1-244 (305)
106 PRK12480 D-lactate dehydrogena 98.7 2.8E-07 6E-12 85.1 11.8 112 13-196 146-262 (330)
107 PRK06522 2-dehydropantoate 2-r 98.5 4.2E-06 9.1E-11 76.0 15.2 198 14-273 1-241 (304)
108 KOG2380|consensus 98.5 6.8E-06 1.5E-10 74.4 15.6 158 14-242 53-226 (480)
109 PRK11861 bifunctional prephena 98.5 1.9E-06 4E-11 87.0 13.0 107 139-247 1-122 (673)
110 KOG2653|consensus 98.5 6.8E-06 1.5E-10 74.8 15.0 195 14-274 7-225 (487)
111 PRK15469 ghrA bifunctional gly 98.4 1.8E-06 4E-11 79.1 11.3 113 13-196 136-254 (312)
112 TIGR02440 FadJ fatty oxidation 98.4 2.8E-07 6.1E-12 93.1 6.1 58 237-294 606-664 (699)
113 cd01065 NAD_bind_Shikimate_DH 98.4 5.2E-07 1.1E-11 73.8 6.4 119 13-196 19-142 (155)
114 PRK13243 glyoxylate reductase; 98.4 2.9E-06 6.3E-11 78.5 11.4 102 12-184 149-255 (333)
115 PRK11154 fadJ multifunctional 98.4 3.6E-07 7.8E-12 92.6 5.8 58 237-294 613-671 (708)
116 PRK06249 2-dehydropantoate 2-r 98.4 3.3E-05 7.2E-10 70.8 18.2 203 11-274 3-254 (313)
117 TIGR01763 MalateDH_bact malate 98.4 2.3E-06 5.1E-11 78.2 10.2 97 14-168 2-115 (305)
118 PRK13403 ketol-acid reductoiso 98.4 7.6E-06 1.6E-10 74.6 13.2 141 13-230 16-173 (335)
119 PRK07574 formate dehydrogenase 98.4 9.6E-06 2.1E-10 76.3 14.2 115 13-196 192-312 (385)
120 cd00650 LDH_MDH_like NAD-depen 98.4 1.8E-06 3.9E-11 77.3 9.0 95 16-168 1-116 (263)
121 PF07991 IlvN: Acetohydroxy ac 98.3 4.3E-06 9.4E-11 68.6 9.7 90 14-175 5-98 (165)
122 PLN03139 formate dehydrogenase 98.3 1.4E-05 3.1E-10 75.1 14.2 116 12-196 198-319 (386)
123 PRK06436 glycerate dehydrogena 98.3 1.5E-05 3.2E-10 72.8 12.8 109 13-195 122-236 (303)
124 PRK11730 fadB multifunctional 98.2 1.6E-06 3.5E-11 87.9 6.0 55 239-293 624-679 (715)
125 KOG2711|consensus 98.2 2.4E-05 5.3E-10 71.0 11.3 179 8-239 16-218 (372)
126 PRK08605 D-lactate dehydrogena 98.1 9.7E-06 2.1E-10 75.0 9.0 111 13-195 146-263 (332)
127 PF02826 2-Hacid_dh_C: D-isome 98.1 1.1E-05 2.4E-10 67.9 7.1 113 14-196 37-155 (178)
128 TIGR01327 PGDH D-3-phosphoglyc 98.1 3.7E-05 7.9E-10 75.5 11.7 129 13-211 138-279 (525)
129 COG0111 SerA Phosphoglycerate 98.1 4E-05 8.6E-10 70.6 11.0 112 14-196 143-261 (324)
130 PF00670 AdoHcyase_NAD: S-aden 98.1 3.1E-05 6.8E-10 63.8 9.2 86 14-172 24-111 (162)
131 KOG2666|consensus 98.1 0.00028 6.1E-09 63.6 15.8 208 14-273 2-252 (481)
132 TIGR02437 FadB fatty oxidation 98.0 6E-06 1.3E-10 83.7 6.0 55 239-293 624-679 (714)
133 TIGR02354 thiF_fam2 thiamine b 98.0 3.8E-05 8.1E-10 66.0 9.0 116 13-168 21-142 (200)
134 PRK13581 D-3-phosphoglycerate 98.0 8.3E-05 1.8E-09 73.0 12.0 128 13-211 140-280 (526)
135 PLN02928 oxidoreductase family 97.9 0.00014 2.9E-09 67.8 12.2 126 13-196 159-290 (347)
136 PRK14194 bifunctional 5,10-met 97.9 3.6E-05 7.8E-10 69.8 7.1 31 13-43 159-192 (301)
137 PRK08410 2-hydroxyacid dehydro 97.9 0.00012 2.5E-09 67.3 10.2 110 12-196 144-259 (311)
138 TIGR02853 spore_dpaA dipicolin 97.8 7.4E-05 1.6E-09 67.8 8.6 37 13-49 151-189 (287)
139 PRK15409 bifunctional glyoxyla 97.8 0.00021 4.5E-09 65.9 11.6 113 12-195 144-263 (323)
140 cd05291 HicDH_like L-2-hydroxy 97.8 0.00013 2.8E-09 66.8 10.0 39 14-52 1-43 (306)
141 PRK11790 D-3-phosphoglycerate 97.8 0.00013 2.8E-09 69.4 9.6 100 12-184 150-254 (409)
142 PF00056 Ldh_1_N: lactate/mala 97.7 0.00034 7.4E-09 56.6 10.1 36 14-49 1-41 (141)
143 PF02558 ApbA: Ketopantoate re 97.7 0.00031 6.7E-09 57.1 9.7 112 16-184 1-115 (151)
144 PRK06932 glycerate dehydrogena 97.7 0.00044 9.6E-09 63.5 11.6 109 13-196 147-261 (314)
145 PRK00066 ldh L-lactate dehydro 97.7 0.0003 6.5E-09 64.6 10.4 36 14-49 7-46 (315)
146 PRK08306 dipicolinate synthase 97.7 0.0003 6.6E-09 64.0 10.3 37 13-49 152-190 (296)
147 PRK06487 glycerate dehydrogena 97.7 0.00037 8.1E-09 64.1 10.9 108 13-196 148-261 (317)
148 PRK00257 erythronate-4-phospha 97.7 0.0001 2.2E-09 69.3 7.2 108 14-195 117-234 (381)
149 TIGR00745 apbA_panE 2-dehydrop 97.7 0.0023 5E-08 57.6 15.8 143 125-273 50-234 (293)
150 COG1052 LdhA Lactate dehydroge 97.7 0.00027 5.8E-09 65.1 9.3 112 13-195 146-263 (324)
151 KOG3124|consensus 97.6 0.00061 1.3E-08 59.8 10.6 102 126-230 53-155 (267)
152 PRK14188 bifunctional 5,10-met 97.6 0.00016 3.5E-09 65.6 7.1 29 13-41 158-189 (296)
153 PRK15076 alpha-galactosidase; 97.6 0.00032 7E-09 67.2 9.5 40 14-53 2-49 (431)
154 PRK13302 putative L-aspartate 97.6 0.00047 1E-08 62.0 10.0 40 11-50 4-48 (271)
155 cd05292 LDH_2 A subgroup of L- 97.6 0.00051 1.1E-08 63.0 10.2 35 14-48 1-39 (308)
156 PRK15438 erythronate-4-phospha 97.6 0.00016 3.5E-09 67.9 6.9 109 13-195 116-234 (378)
157 COG1893 ApbA Ketopantoate redu 97.6 0.0032 6.9E-08 57.7 15.0 200 14-273 1-243 (307)
158 PRK13304 L-aspartate dehydroge 97.6 0.00055 1.2E-08 61.4 9.7 37 14-50 2-43 (265)
159 PLN02306 hydroxypyruvate reduc 97.5 0.00069 1.5E-08 63.9 9.9 129 12-196 164-300 (386)
160 PRK06141 ornithine cyclodeamin 97.5 0.00048 1.1E-08 63.3 8.6 93 12-172 124-220 (314)
161 cd01075 NAD_bind_Leu_Phe_Val_D 97.5 0.0023 5E-08 54.9 12.1 41 11-51 26-68 (200)
162 cd00300 LDH_like L-lactate deh 97.5 0.00077 1.7E-08 61.5 9.5 35 16-50 1-39 (300)
163 cd05293 LDH_1 A subgroup of L- 97.5 0.001 2.2E-08 61.1 10.3 35 14-48 4-42 (312)
164 PRK14179 bifunctional 5,10-met 97.5 0.00036 7.9E-09 62.8 7.1 27 14-40 159-188 (284)
165 PRK00961 H(2)-dependent methyl 97.5 0.0013 2.8E-08 58.3 10.2 113 122-238 128-245 (342)
166 TIGR01723 hmd_TIGR 5,10-methen 97.4 0.002 4.2E-08 57.2 10.6 114 122-238 126-243 (340)
167 PRK04148 hypothetical protein; 97.4 0.0031 6.7E-08 50.4 10.9 92 14-171 18-111 (134)
168 COG1748 LYS9 Saccharopine dehy 97.4 0.00065 1.4E-08 63.8 7.8 41 13-53 1-44 (389)
169 PF01488 Shikimate_DH: Shikima 97.4 0.00068 1.5E-08 54.4 6.9 41 13-53 12-55 (135)
170 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0013 2.8E-08 60.4 9.4 39 13-51 178-219 (311)
171 PLN02602 lactate dehydrogenase 97.3 0.0022 4.8E-08 59.8 10.7 36 14-49 38-77 (350)
172 PRK05708 2-dehydropantoate 2-r 97.2 0.0022 4.7E-08 58.7 9.9 113 14-184 3-118 (305)
173 cd05294 LDH-like_MDH_nadp A la 97.2 0.0015 3.3E-08 59.8 8.8 31 14-44 1-36 (309)
174 cd00401 AdoHcyase S-adenosyl-L 97.2 0.0029 6.3E-08 60.1 10.8 38 14-51 203-242 (413)
175 PTZ00075 Adenosylhomocysteinas 97.2 0.0016 3.5E-08 62.6 9.1 36 13-48 254-291 (476)
176 TIGR02371 ala_DH_arch alanine 97.2 0.0018 4E-08 59.7 9.3 94 11-172 126-223 (325)
177 PLN02494 adenosylhomocysteinas 97.2 0.0036 7.9E-08 60.1 11.4 36 14-49 255-292 (477)
178 PRK05225 ketol-acid reductoiso 97.2 0.0016 3.4E-08 62.0 8.7 145 14-230 37-200 (487)
179 TIGR00936 ahcY adenosylhomocys 97.2 0.0021 4.5E-08 60.9 9.5 36 13-48 195-232 (406)
180 PRK05476 S-adenosyl-L-homocyst 97.2 0.0023 5E-08 61.0 9.3 37 13-49 212-250 (425)
181 cd01078 NAD_bind_H4MPT_DH NADP 97.1 0.0034 7.3E-08 53.4 9.1 40 14-53 29-71 (194)
182 COG0569 TrkA K+ transport syst 97.1 0.0048 1E-07 54.0 10.2 36 14-49 1-38 (225)
183 cd01487 E1_ThiF_like E1_ThiF_l 97.1 0.003 6.5E-08 53.0 8.1 30 15-44 1-33 (174)
184 TIGR00507 aroE shikimate 5-deh 97.0 0.0016 3.4E-08 58.5 6.8 39 14-52 118-158 (270)
185 PRK08618 ornithine cyclodeamin 97.0 0.005 1.1E-07 56.8 10.0 93 12-172 126-222 (325)
186 PRK03659 glutathione-regulated 97.0 0.01 2.2E-07 59.4 12.6 94 14-169 401-497 (601)
187 PRK12549 shikimate 5-dehydroge 97.0 0.0027 5.9E-08 57.5 7.7 40 14-53 128-170 (284)
188 PRK07340 ornithine cyclodeamin 97.0 0.0053 1.2E-07 56.1 9.7 91 12-172 124-218 (304)
189 PF13460 NAD_binding_10: NADH( 96.9 0.0062 1.3E-07 50.7 8.9 34 16-49 1-37 (183)
190 TIGR01035 hemA glutamyl-tRNA r 96.9 0.0034 7.4E-08 59.9 8.0 37 14-50 181-220 (417)
191 COG0059 IlvC Ketol-acid reduct 96.9 0.02 4.3E-07 51.7 12.0 139 14-229 19-175 (338)
192 TIGR00518 alaDH alanine dehydr 96.8 0.0022 4.7E-08 60.3 5.6 38 14-51 168-207 (370)
193 PRK00258 aroE shikimate 5-dehy 96.8 0.0022 4.7E-08 57.9 5.4 39 14-52 124-165 (278)
194 KOG0069|consensus 96.8 0.012 2.5E-07 54.3 9.9 114 13-196 162-281 (336)
195 PRK00045 hemA glutamyl-tRNA re 96.8 0.0058 1.2E-07 58.5 8.4 37 14-50 183-222 (423)
196 COG0039 Mdh Malate/lactate deh 96.8 0.0096 2.1E-07 54.4 9.4 34 14-47 1-38 (313)
197 TIGR02992 ectoine_eutC ectoine 96.8 0.009 1.9E-07 55.2 9.3 93 13-172 129-225 (326)
198 PRK10669 putative cation:proto 96.7 0.013 2.9E-07 58.0 11.0 39 14-52 418-458 (558)
199 PF02254 TrkA_N: TrkA-N domain 96.7 0.033 7E-07 42.9 11.0 37 16-52 1-39 (116)
200 cd05290 LDH_3 A subgroup of L- 96.7 0.014 2.9E-07 53.5 10.1 34 15-48 1-38 (307)
201 PLN00112 malate dehydrogenase 96.7 0.027 5.9E-07 54.0 12.2 36 14-49 101-148 (444)
202 PF02423 OCD_Mu_crystall: Orni 96.6 0.01 2.2E-07 54.6 8.8 96 12-173 127-226 (313)
203 PRK08644 thiamine biosynthesis 96.6 0.014 3E-07 50.6 9.1 31 14-44 29-62 (212)
204 PF01408 GFO_IDH_MocA: Oxidore 96.6 0.036 7.8E-07 42.8 10.6 37 15-51 2-43 (120)
205 COG0300 DltE Short-chain dehyd 96.6 0.012 2.6E-07 52.6 8.7 47 10-56 3-52 (265)
206 PLN00106 malate dehydrogenase 96.6 0.011 2.3E-07 54.6 8.3 31 14-44 19-54 (323)
207 PRK06407 ornithine cyclodeamin 96.6 0.013 2.7E-07 53.6 8.8 94 12-172 116-213 (301)
208 PRK09496 trkA potassium transp 96.5 0.018 3.9E-07 55.3 10.2 39 14-52 1-41 (453)
209 PRK08291 ectoine utilization p 96.5 0.01 2.2E-07 54.9 8.2 42 13-54 132-177 (330)
210 COG2423 Predicted ornithine cy 96.5 0.017 3.6E-07 53.3 9.2 95 11-172 128-226 (330)
211 PRK03562 glutathione-regulated 96.5 0.031 6.7E-07 56.2 11.6 39 14-52 401-441 (621)
212 cd05197 GH4_glycoside_hydrolas 96.4 0.043 9.3E-07 52.6 11.9 24 122-145 61-84 (425)
213 PRK06823 ornithine cyclodeamin 96.4 0.022 4.8E-07 52.3 9.6 93 12-172 127-223 (315)
214 TIGR01757 Malate-DH_plant mala 96.4 0.052 1.1E-06 51.2 12.0 36 14-49 45-92 (387)
215 cd01338 MDH_choloroplast_like 96.4 0.013 2.9E-07 54.0 7.9 32 14-45 3-44 (322)
216 COG1712 Predicted dinucleotide 96.4 0.017 3.6E-07 50.1 7.8 37 15-51 2-43 (255)
217 cd01079 NAD_bind_m-THF_DH NAD 96.4 0.0077 1.7E-07 51.2 5.8 35 11-45 60-97 (197)
218 cd05298 GH4_GlvA_pagL_like Gly 96.4 0.054 1.2E-06 52.0 12.2 24 122-145 61-84 (437)
219 KOG1683|consensus 96.4 0.0013 2.8E-08 60.6 1.0 53 242-294 296-349 (380)
220 PLN00203 glutamyl-tRNA reducta 96.3 0.008 1.7E-07 58.9 6.5 40 13-52 266-308 (519)
221 PF01113 DapB_N: Dihydrodipico 96.3 0.017 3.6E-07 45.6 7.2 31 14-44 1-36 (124)
222 TIGR01759 MalateDH-SF1 malate 96.3 0.026 5.7E-07 52.0 9.5 31 14-44 4-44 (323)
223 PRK00683 murD UDP-N-acetylmura 96.3 0.049 1.1E-06 52.0 11.6 37 11-47 1-39 (418)
224 PRK05442 malate dehydrogenase; 96.3 0.021 4.5E-07 52.8 8.5 32 14-45 5-46 (326)
225 KOG1201|consensus 96.3 0.017 3.6E-07 52.1 7.5 70 14-101 38-112 (300)
226 PRK00048 dihydrodipicolinate r 96.3 0.011 2.5E-07 52.6 6.5 34 14-47 2-40 (257)
227 TIGR01772 MDH_euk_gproteo mala 96.2 0.019 4.2E-07 52.7 8.1 30 15-44 1-35 (312)
228 cd05212 NAD_bind_m-THF_DH_Cycl 96.2 0.023 5E-07 45.9 7.5 38 128-172 64-101 (140)
229 smart00859 Semialdhyde_dh Semi 96.2 0.023 5E-07 44.4 7.4 40 134-175 64-103 (122)
230 PRK06046 alanine dehydrogenase 96.2 0.034 7.4E-07 51.3 9.6 93 12-172 128-224 (326)
231 PRK09424 pntA NAD(P) transhydr 96.2 0.034 7.3E-07 54.3 9.9 39 14-52 166-206 (509)
232 PRK09496 trkA potassium transp 96.2 0.059 1.3E-06 51.7 11.4 40 13-52 231-272 (453)
233 TIGR00561 pntA NAD(P) transhyd 96.2 0.04 8.7E-07 53.8 10.1 39 14-52 165-205 (511)
234 TIGR01470 cysG_Nterm siroheme 96.1 0.1 2.2E-06 45.0 11.4 34 12-45 8-43 (205)
235 PF03435 Saccharop_dh: Sacchar 96.1 0.016 3.4E-07 54.7 7.0 37 16-52 1-41 (386)
236 PRK07589 ornithine cyclodeamin 96.1 0.051 1.1E-06 50.6 10.2 95 12-172 128-226 (346)
237 TIGR01809 Shik-DH-AROM shikima 96.1 0.019 4E-07 52.0 7.1 39 14-52 126-167 (282)
238 PF02882 THF_DHG_CYH_C: Tetrah 96.0 0.022 4.8E-07 47.1 6.7 31 13-43 36-69 (160)
239 CHL00194 ycf39 Ycf39; Provisio 96.0 0.021 4.6E-07 52.2 7.4 33 15-47 2-37 (317)
240 cd05296 GH4_P_beta_glucosidase 96.0 0.071 1.5E-06 51.0 11.0 23 122-144 62-84 (419)
241 TIGR01771 L-LDH-NAD L-lactate 96.0 0.03 6.6E-07 51.1 8.1 30 20-49 5-36 (299)
242 PRK05993 short chain dehydroge 96.0 0.032 6.9E-07 49.9 8.2 37 14-50 4-44 (277)
243 COG2910 Putative NADH-flavin r 96.0 0.034 7.4E-07 46.8 7.4 36 14-49 1-39 (211)
244 PRK14175 bifunctional 5,10-met 95.9 0.039 8.5E-07 49.9 8.2 32 12-43 157-191 (286)
245 PRK09310 aroDE bifunctional 3- 95.9 0.025 5.5E-07 55.0 7.5 39 13-51 332-372 (477)
246 PRK08340 glucose-1-dehydrogena 95.9 0.043 9.3E-07 48.4 8.4 41 15-55 2-45 (259)
247 PRK06718 precorrin-2 dehydroge 95.9 0.14 3E-06 44.0 11.3 33 12-44 9-43 (202)
248 PF01118 Semialdhyde_dh: Semia 95.9 0.026 5.5E-07 44.2 6.2 41 128-174 60-100 (121)
249 cd01337 MDH_glyoxysomal_mitoch 95.9 0.064 1.4E-06 49.2 9.6 30 14-43 1-35 (310)
250 PLN02819 lysine-ketoglutarate 95.9 0.058 1.3E-06 56.9 10.4 41 12-52 568-624 (1042)
251 PRK06182 short chain dehydroge 95.8 0.044 9.6E-07 48.7 8.4 60 14-96 4-67 (273)
252 PLN02253 xanthoxin dehydrogena 95.8 0.069 1.5E-06 47.6 9.6 67 15-99 19-90 (280)
253 PTZ00325 malate dehydrogenase; 95.8 0.055 1.2E-06 49.9 9.0 35 8-42 3-42 (321)
254 cd01080 NAD_bind_m-THF_DH_Cycl 95.8 0.03 6.5E-07 46.7 6.7 32 13-44 44-78 (168)
255 PRK08339 short chain dehydroge 95.8 0.053 1.1E-06 48.1 8.7 42 14-55 8-53 (263)
256 PRK08862 short chain dehydroge 95.8 0.057 1.2E-06 47.0 8.8 36 20-55 15-50 (227)
257 COG4221 Short-chain alcohol de 95.8 0.054 1.2E-06 47.5 8.4 70 14-102 6-80 (246)
258 TIGR02356 adenyl_thiF thiazole 95.8 0.042 9.1E-07 47.1 7.8 31 14-44 22-55 (202)
259 COG0686 Ald Alanine dehydrogen 95.8 0.015 3.2E-07 52.7 4.9 97 14-171 169-268 (371)
260 cd00704 MDH Malate dehydrogena 95.7 0.031 6.8E-07 51.6 7.0 30 15-44 2-41 (323)
261 PRK14189 bifunctional 5,10-met 95.7 0.038 8.3E-07 49.9 7.3 28 14-41 159-189 (285)
262 PRK06199 ornithine cyclodeamin 95.7 0.049 1.1E-06 51.4 8.3 42 12-53 154-200 (379)
263 PRK08265 short chain dehydroge 95.7 0.063 1.4E-06 47.5 8.6 33 20-52 16-48 (261)
264 TIGR01758 MDH_euk_cyt malate d 95.7 0.062 1.4E-06 49.6 8.7 31 15-45 1-41 (324)
265 cd01336 MDH_cytoplasmic_cytoso 95.6 0.043 9.3E-07 50.7 7.6 32 14-45 3-44 (325)
266 PRK12828 short chain dehydroge 95.6 0.1 2.3E-06 44.8 9.6 39 14-52 8-49 (239)
267 PRK05086 malate dehydrogenase; 95.6 0.067 1.5E-06 49.1 8.6 32 14-45 1-38 (312)
268 KOG1014|consensus 95.6 0.06 1.3E-06 48.8 8.0 72 13-102 48-123 (312)
269 PRK13940 glutamyl-tRNA reducta 95.5 0.034 7.4E-07 53.0 6.7 38 14-51 182-222 (414)
270 PRK07890 short chain dehydroge 95.5 0.084 1.8E-06 46.2 8.7 41 14-54 6-49 (258)
271 PRK09186 flagellin modificatio 95.5 0.099 2.1E-06 45.7 9.1 41 14-54 5-48 (256)
272 PRK12475 thiamine/molybdopteri 95.5 0.085 1.8E-06 49.0 9.0 31 14-44 25-58 (338)
273 PRK07814 short chain dehydroge 95.5 0.099 2.1E-06 46.2 9.1 41 14-54 11-54 (263)
274 PRK05653 fabG 3-ketoacyl-(acyl 95.4 0.11 2.3E-06 44.9 9.1 43 11-53 3-48 (246)
275 PRK07825 short chain dehydroge 95.4 0.086 1.9E-06 46.8 8.6 39 14-52 6-47 (273)
276 PLN03209 translocon at the inn 95.4 0.095 2.1E-06 51.8 9.4 41 13-53 79-123 (576)
277 PRK09242 tropinone reductase; 95.4 0.095 2.1E-06 46.0 8.7 46 10-55 6-54 (257)
278 PRK05867 short chain dehydroge 95.4 0.094 2E-06 46.0 8.6 40 15-54 10-53 (253)
279 PRK14190 bifunctional 5,10-met 95.3 0.055 1.2E-06 48.9 6.9 28 14-41 159-189 (284)
280 COG0499 SAM1 S-adenosylhomocys 95.3 0.056 1.2E-06 49.9 6.9 32 15-46 210-244 (420)
281 PRK08643 acetoin reductase; Va 95.3 0.11 2.3E-06 45.6 8.7 36 20-55 12-47 (256)
282 PF03059 NAS: Nicotianamine sy 95.3 0.19 4.1E-06 45.2 10.3 97 14-169 122-228 (276)
283 PRK06172 short chain dehydroge 95.3 0.13 2.8E-06 44.9 9.2 41 14-54 8-51 (253)
284 PRK14177 bifunctional 5,10-met 95.3 0.065 1.4E-06 48.4 7.2 28 14-41 160-190 (284)
285 PRK13301 putative L-aspartate 95.3 0.095 2.1E-06 46.8 8.2 35 14-48 3-43 (267)
286 PRK07454 short chain dehydroge 95.3 0.11 2.4E-06 45.0 8.7 41 14-54 7-50 (241)
287 TIGR00036 dapB dihydrodipicoli 95.3 0.096 2.1E-06 46.9 8.4 30 14-43 2-36 (266)
288 COG0373 HemA Glutamyl-tRNA red 95.3 0.048 1E-06 51.7 6.6 40 14-53 179-221 (414)
289 PLN02516 methylenetetrahydrofo 95.3 0.057 1.2E-06 49.1 6.8 28 14-41 168-198 (299)
290 PRK12429 3-hydroxybutyrate deh 95.3 0.12 2.6E-06 45.1 8.8 41 14-54 5-48 (258)
291 PRK07326 short chain dehydroge 95.3 0.12 2.7E-06 44.5 8.9 41 14-54 7-50 (237)
292 PRK07062 short chain dehydroge 95.2 0.095 2.1E-06 46.2 8.3 41 15-55 9-53 (265)
293 PF05368 NmrA: NmrA-like famil 95.2 0.16 3.6E-06 43.9 9.6 31 16-46 1-34 (233)
294 PRK06194 hypothetical protein; 95.2 0.11 2.4E-06 46.4 8.7 41 14-54 7-50 (287)
295 PRK14180 bifunctional 5,10-met 95.2 0.061 1.3E-06 48.5 6.8 28 14-41 159-189 (282)
296 KOG1495|consensus 95.2 0.25 5.4E-06 44.1 10.3 36 13-48 20-59 (332)
297 PRK06139 short chain dehydroge 95.2 0.12 2.5E-06 47.9 8.8 62 20-98 17-79 (330)
298 PRK05866 short chain dehydroge 95.2 0.13 2.8E-06 46.5 9.0 41 14-54 41-84 (293)
299 PRK08267 short chain dehydroge 95.1 0.12 2.7E-06 45.4 8.6 40 14-53 2-44 (260)
300 PRK07109 short chain dehydroge 95.1 0.12 2.5E-06 47.8 8.8 42 14-55 9-53 (334)
301 TIGR01921 DAP-DH diaminopimela 95.1 0.36 7.9E-06 44.4 11.8 32 13-44 3-38 (324)
302 TIGR03325 BphB_TodD cis-2,3-di 95.1 0.12 2.6E-06 45.6 8.6 32 20-51 15-46 (262)
303 PRK14186 bifunctional 5,10-met 95.1 0.074 1.6E-06 48.3 7.2 28 14-41 159-189 (297)
304 cd05311 NAD_bind_2_malic_enz N 95.1 0.19 4.1E-06 43.9 9.6 30 14-43 26-60 (226)
305 PRK13394 3-hydroxybutyrate deh 95.1 0.13 2.8E-06 45.0 8.7 42 14-55 8-52 (262)
306 PRK14170 bifunctional 5,10-met 95.1 0.081 1.8E-06 47.7 7.3 28 14-41 158-188 (284)
307 PRK06124 gluconate 5-dehydroge 95.1 0.15 3.2E-06 44.7 9.0 41 14-54 12-55 (256)
308 PRK14169 bifunctional 5,10-met 95.1 0.074 1.6E-06 48.0 7.0 28 14-41 157-187 (282)
309 PRK05876 short chain dehydroge 95.1 0.12 2.6E-06 46.2 8.5 40 15-54 7-50 (275)
310 PRK06949 short chain dehydroge 95.1 0.15 3.3E-06 44.6 9.0 41 14-54 10-53 (258)
311 PRK14173 bifunctional 5,10-met 95.1 0.079 1.7E-06 47.9 7.1 28 14-41 156-186 (287)
312 PRK07063 short chain dehydroge 95.0 0.15 3.3E-06 44.7 9.0 36 20-55 17-52 (260)
313 PRK06196 oxidoreductase; Provi 95.0 0.14 3.1E-06 46.6 8.9 34 20-53 36-69 (315)
314 PRK12939 short chain dehydroge 95.0 0.15 3.3E-06 44.2 8.8 41 14-54 8-51 (250)
315 PRK05884 short chain dehydroge 95.0 0.096 2.1E-06 45.3 7.4 38 15-52 2-42 (223)
316 PRK14172 bifunctional 5,10-met 95.0 0.081 1.7E-06 47.6 7.0 28 14-41 159-189 (278)
317 PRK06138 short chain dehydroge 95.0 0.16 3.4E-06 44.2 8.9 40 14-53 6-48 (252)
318 PRK14192 bifunctional 5,10-met 95.0 0.068 1.5E-06 48.4 6.6 29 14-42 160-191 (283)
319 PRK07478 short chain dehydroge 95.0 0.16 3.4E-06 44.5 8.8 36 20-55 16-51 (254)
320 PRK05872 short chain dehydroge 95.0 0.18 3.8E-06 45.6 9.3 40 14-53 10-52 (296)
321 PRK06180 short chain dehydroge 95.0 0.13 2.7E-06 45.9 8.3 37 14-50 5-44 (277)
322 PRK06079 enoyl-(acyl carrier p 95.0 0.16 3.4E-06 44.7 8.8 31 14-44 7-43 (252)
323 PRK07102 short chain dehydroge 94.9 0.13 2.7E-06 44.8 8.0 40 14-53 2-44 (243)
324 PRK12548 shikimate 5-dehydroge 94.9 0.15 3.3E-06 46.2 8.6 32 14-45 127-161 (289)
325 PRK14166 bifunctional 5,10-met 94.9 0.09 2E-06 47.4 6.9 28 14-41 158-188 (282)
326 PRK06101 short chain dehydroge 94.8 0.11 2.3E-06 45.3 7.3 37 15-51 3-42 (240)
327 PRK06200 2,3-dihydroxy-2,3-dih 94.8 0.16 3.4E-06 44.8 8.5 33 20-52 16-48 (263)
328 PRK07677 short chain dehydroge 94.8 0.18 4E-06 44.0 8.9 40 15-54 3-45 (252)
329 PF13561 adh_short_C2: Enoyl-( 94.8 0.099 2.1E-06 45.5 7.1 64 20-101 6-70 (241)
330 PRK10792 bifunctional 5,10-met 94.8 0.11 2.5E-06 46.8 7.5 29 14-42 160-191 (285)
331 PRK14176 bifunctional 5,10-met 94.8 0.1 2.2E-06 47.2 7.2 28 14-41 165-195 (287)
332 PRK14191 bifunctional 5,10-met 94.8 0.06 1.3E-06 48.6 5.7 28 14-41 158-188 (285)
333 PRK10538 malonic semialdehyde 94.8 0.15 3.3E-06 44.5 8.3 38 15-52 2-42 (248)
334 PRK07523 gluconate 5-dehydroge 94.8 0.19 4.1E-06 44.0 8.9 42 14-55 11-55 (255)
335 PRK12829 short chain dehydroge 94.8 0.21 4.5E-06 43.8 9.1 39 14-52 12-53 (264)
336 PRK05854 short chain dehydroge 94.8 0.19 4.2E-06 45.9 9.0 41 15-55 15-59 (313)
337 PRK08085 gluconate 5-dehydroge 94.7 0.18 3.8E-06 44.2 8.5 36 20-55 19-54 (254)
338 PRK07831 short chain dehydroge 94.7 0.31 6.7E-06 42.9 10.1 35 21-55 29-63 (262)
339 PRK07774 short chain dehydroge 94.7 0.25 5.3E-06 43.0 9.4 41 14-54 7-50 (250)
340 PRK14171 bifunctional 5,10-met 94.7 0.11 2.3E-06 47.1 7.0 28 14-41 160-190 (288)
341 PRK08589 short chain dehydroge 94.7 0.21 4.5E-06 44.4 9.0 63 20-100 16-79 (272)
342 PRK14187 bifunctional 5,10-met 94.7 0.091 2E-06 47.6 6.5 28 14-41 161-191 (294)
343 PRK14182 bifunctional 5,10-met 94.7 0.11 2.4E-06 46.8 7.0 28 14-41 158-188 (282)
344 PRK06057 short chain dehydroge 94.6 0.18 3.9E-06 44.2 8.3 42 11-52 5-49 (255)
345 PRK08703 short chain dehydroge 94.6 0.28 6.1E-06 42.4 9.5 41 14-54 7-50 (239)
346 PRK04207 glyceraldehyde-3-phos 94.6 0.18 3.9E-06 46.9 8.6 35 14-48 2-40 (341)
347 PRK07067 sorbitol dehydrogenas 94.6 0.16 3.5E-06 44.5 8.0 34 20-53 16-49 (257)
348 PRK14193 bifunctional 5,10-met 94.6 0.12 2.5E-06 46.7 6.9 28 14-41 159-191 (284)
349 PRK06179 short chain dehydroge 94.6 0.097 2.1E-06 46.3 6.5 60 15-99 6-69 (270)
350 PRK06113 7-alpha-hydroxysteroi 94.6 0.29 6.2E-06 42.9 9.4 52 1-54 1-55 (255)
351 PRK14183 bifunctional 5,10-met 94.6 0.1 2.2E-06 47.0 6.5 28 14-41 158-188 (281)
352 PRK06197 short chain dehydroge 94.5 0.25 5.5E-06 44.7 9.1 40 15-54 17-60 (306)
353 PLN02616 tetrahydrofolate dehy 94.5 0.13 2.7E-06 47.9 7.0 29 13-41 231-262 (364)
354 PRK08213 gluconate 5-dehydroge 94.4 0.27 5.8E-06 43.2 9.0 41 14-54 13-56 (259)
355 PLN02897 tetrahydrofolate dehy 94.4 0.13 2.8E-06 47.6 7.0 29 13-41 214-245 (345)
356 PRK14178 bifunctional 5,10-met 94.4 0.12 2.6E-06 46.5 6.7 30 14-43 153-185 (279)
357 PRK06114 short chain dehydroge 94.4 0.28 6E-06 43.0 9.0 40 15-54 9-53 (254)
358 PRK05693 short chain dehydroge 94.4 0.19 4.1E-06 44.6 8.0 31 20-50 11-41 (274)
359 PF13380 CoA_binding_2: CoA bi 94.4 0.21 4.6E-06 38.8 7.3 100 14-191 1-107 (116)
360 PRK12826 3-ketoacyl-(acyl-carr 94.4 0.32 7E-06 42.1 9.3 41 14-54 7-50 (251)
361 PRK08251 short chain dehydroge 94.4 0.23 4.9E-06 43.2 8.4 35 20-54 12-46 (248)
362 TIGR03466 HpnA hopanoid-associ 94.4 0.17 3.7E-06 45.8 7.8 32 15-46 2-36 (328)
363 PRK08945 putative oxoacyl-(acy 94.4 0.32 7E-06 42.3 9.3 41 14-54 13-56 (247)
364 PRK06720 hypothetical protein; 94.4 0.3 6.6E-06 40.6 8.6 39 15-53 17-59 (169)
365 PRK06940 short chain dehydroge 94.4 0.18 3.9E-06 45.0 7.8 41 13-54 1-44 (275)
366 PRK05717 oxidoreductase; Valid 94.3 0.27 5.9E-06 43.0 8.8 31 20-50 20-50 (255)
367 PRK14181 bifunctional 5,10-met 94.3 0.15 3.1E-06 46.2 7.0 39 127-172 192-230 (287)
368 PRK07231 fabG 3-ketoacyl-(acyl 94.3 0.34 7.4E-06 42.0 9.3 40 14-53 6-48 (251)
369 PRK08415 enoyl-(acyl carrier p 94.3 0.29 6.3E-06 43.8 9.0 32 14-45 5-42 (274)
370 PRK07074 short chain dehydroge 94.3 0.27 5.8E-06 43.0 8.6 39 15-53 4-45 (257)
371 PRK09072 short chain dehydroge 94.3 0.33 7.1E-06 42.7 9.2 40 14-53 6-48 (263)
372 PF12847 Methyltransf_18: Meth 94.3 0.47 1E-05 35.8 8.9 40 15-54 4-45 (112)
373 PRK12384 sorbitol-6-phosphate 94.3 0.25 5.4E-06 43.3 8.4 40 15-54 4-46 (259)
374 PRK07832 short chain dehydroge 94.3 0.29 6.2E-06 43.4 8.8 40 15-54 2-44 (272)
375 PRK05565 fabG 3-ketoacyl-(acyl 94.2 0.33 7.1E-06 41.9 9.0 41 14-54 6-50 (247)
376 PRK05786 fabG 3-ketoacyl-(acyl 94.2 0.37 8E-06 41.5 9.2 39 14-52 6-47 (238)
377 COG4074 Mth H2-forming N5,N10- 94.2 0.71 1.5E-05 40.0 10.5 109 123-234 127-239 (343)
378 PRK06719 precorrin-2 dehydroge 94.2 0.65 1.4E-05 38.2 10.1 36 7-42 5-44 (157)
379 PRK07453 protochlorophyllide o 94.2 0.33 7E-06 44.4 9.3 35 20-54 16-50 (322)
380 TIGR01289 LPOR light-dependent 94.2 0.26 5.6E-06 45.0 8.5 40 14-53 3-47 (314)
381 PRK08177 short chain dehydroge 94.1 0.15 3.1E-06 43.9 6.5 35 15-49 3-40 (225)
382 PRK07688 thiamine/molybdopteri 94.1 0.27 5.9E-06 45.7 8.5 34 14-47 25-61 (339)
383 PRK07666 fabG 3-ketoacyl-(acyl 94.1 0.36 7.7E-06 41.7 8.9 40 14-53 8-50 (239)
384 PRK06924 short chain dehydroge 94.1 0.2 4.3E-06 43.7 7.3 31 14-44 2-35 (251)
385 PRK06914 short chain dehydroge 94.1 0.33 7.2E-06 43.1 8.9 39 15-53 5-46 (280)
386 PRK08277 D-mannonate oxidoredu 94.1 0.33 7.1E-06 43.1 8.8 35 20-54 20-54 (278)
387 PRK08263 short chain dehydroge 94.0 0.28 6E-06 43.6 8.3 39 14-52 4-45 (275)
388 TIGR01963 PHB_DH 3-hydroxybuty 94.0 0.29 6.2E-06 42.6 8.2 40 15-54 3-45 (255)
389 PRK05599 hypothetical protein; 94.0 0.29 6.3E-06 42.8 8.2 63 20-99 10-73 (246)
390 TIGR03206 benzo_BadH 2-hydroxy 94.0 0.35 7.6E-06 41.9 8.7 41 14-54 4-47 (250)
391 PRK06483 dihydromonapterin red 94.0 0.24 5.2E-06 42.8 7.6 28 20-47 12-39 (236)
392 KOG1370|consensus 94.0 0.35 7.5E-06 43.9 8.5 87 13-173 213-302 (434)
393 PRK08017 oxidoreductase; Provi 94.0 0.27 6E-06 42.8 8.0 37 14-50 3-42 (256)
394 PLN00141 Tic62-NAD(P)-related 94.0 0.17 3.6E-06 44.5 6.6 38 11-48 15-55 (251)
395 PRK06953 short chain dehydroge 93.9 0.26 5.6E-06 42.2 7.7 37 14-50 2-41 (222)
396 PRK06500 short chain dehydroge 93.9 0.36 7.8E-06 41.8 8.7 39 14-52 7-48 (249)
397 PRK06505 enoyl-(acyl carrier p 93.9 0.34 7.3E-06 43.2 8.6 34 14-47 7-46 (271)
398 PRK05650 short chain dehydroge 93.9 0.34 7.3E-06 42.9 8.5 40 15-54 2-44 (270)
399 PRK08063 enoyl-(acyl carrier p 93.9 0.33 7.2E-06 42.1 8.4 41 14-54 5-49 (250)
400 PRK05855 short chain dehydroge 93.9 0.29 6.2E-06 48.1 8.8 68 14-98 316-387 (582)
401 PRK07576 short chain dehydroge 93.9 0.38 8.2E-06 42.5 8.8 41 14-54 10-53 (264)
402 PRK14106 murD UDP-N-acetylmura 93.8 0.24 5.2E-06 47.5 8.0 33 12-44 4-38 (450)
403 PRK14027 quinate/shikimate deh 93.8 0.27 5.8E-06 44.5 7.7 40 14-53 128-170 (283)
404 PRK13303 L-aspartate dehydroge 93.8 0.26 5.6E-06 44.1 7.6 29 14-42 2-34 (265)
405 PRK07060 short chain dehydroge 93.8 0.32 6.9E-06 42.1 8.0 38 14-51 10-50 (245)
406 PF02056 Glyco_hydro_4: Family 93.8 0.13 2.8E-06 43.4 5.2 57 77-146 28-84 (183)
407 PRK07097 gluconate 5-dehydroge 93.8 0.38 8.3E-06 42.4 8.6 35 20-54 20-54 (265)
408 PRK07775 short chain dehydroge 93.7 0.49 1.1E-05 42.0 9.3 47 7-53 4-53 (274)
409 TIGR02415 23BDH acetoin reduct 93.7 0.38 8.2E-06 41.9 8.4 35 20-54 10-44 (254)
410 COG0190 FolD 5,10-methylene-te 93.7 0.2 4.4E-06 44.9 6.5 29 14-42 157-188 (283)
411 COG1486 CelF Alpha-galactosida 93.7 0.17 3.7E-06 48.2 6.4 23 122-144 64-86 (442)
412 PRK07035 short chain dehydroge 93.7 0.47 1E-05 41.3 8.9 35 20-54 18-52 (252)
413 PRK07024 short chain dehydroge 93.6 0.32 6.9E-06 42.7 7.8 39 14-52 3-44 (257)
414 PRK14174 bifunctional 5,10-met 93.6 0.2 4.3E-06 45.6 6.5 29 14-42 160-195 (295)
415 PRK12409 D-amino acid dehydrog 93.6 0.069 1.5E-06 50.5 3.7 31 14-44 2-34 (410)
416 PRK12745 3-ketoacyl-(acyl-carr 93.6 0.43 9.4E-06 41.6 8.6 30 15-44 3-36 (256)
417 PRK07533 enoyl-(acyl carrier p 93.6 0.37 8E-06 42.5 8.2 33 14-46 10-48 (258)
418 PRK12749 quinate/shikimate deh 93.6 0.31 6.7E-06 44.3 7.7 36 14-49 125-163 (288)
419 PRK06482 short chain dehydroge 93.6 0.36 7.9E-06 42.8 8.1 39 14-52 3-44 (276)
420 PRK12550 shikimate 5-dehydroge 93.5 0.21 4.5E-06 45.0 6.5 37 14-50 123-162 (272)
421 PRK14168 bifunctional 5,10-met 93.5 0.26 5.5E-06 44.9 6.9 28 14-41 162-196 (297)
422 PRK14184 bifunctional 5,10-met 93.5 0.2 4.3E-06 45.3 6.2 29 14-42 158-193 (286)
423 PRK08303 short chain dehydroge 93.4 0.46 9.9E-06 43.3 8.7 30 15-44 9-42 (305)
424 COG0673 MviM Predicted dehydro 93.4 0.22 4.8E-06 45.6 6.7 42 11-52 1-48 (342)
425 PRK06181 short chain dehydroge 93.4 0.44 9.6E-06 41.8 8.4 40 15-54 3-45 (263)
426 KOG1200|consensus 93.4 0.21 4.5E-06 42.6 5.7 43 10-52 10-56 (256)
427 PRK12936 3-ketoacyl-(acyl-carr 93.4 0.48 1E-05 40.9 8.5 38 14-51 7-47 (245)
428 PRK06935 2-deoxy-D-gluconate 3 93.4 0.49 1.1E-05 41.5 8.6 32 20-52 25-56 (258)
429 PRK06841 short chain dehydroge 93.3 0.63 1.4E-05 40.6 9.2 33 14-46 16-51 (255)
430 PRK06603 enoyl-(acyl carrier p 93.3 0.4 8.6E-06 42.4 8.0 31 14-44 8-44 (260)
431 PRK06484 short chain dehydroge 93.3 0.35 7.6E-06 47.2 8.3 40 14-53 269-312 (520)
432 PRK05562 precorrin-2 dehydroge 93.3 1.2 2.6E-05 38.9 10.6 30 14-43 26-57 (223)
433 PRK08219 short chain dehydroge 93.3 0.34 7.4E-06 41.3 7.3 38 13-51 3-43 (227)
434 PRK05875 short chain dehydroge 93.2 0.61 1.3E-05 41.3 9.0 42 12-53 6-50 (276)
435 PLN02968 Probable N-acetyl-gam 93.2 0.22 4.9E-06 47.0 6.4 34 13-46 38-75 (381)
436 PRK09134 short chain dehydroge 93.2 0.63 1.4E-05 40.8 9.0 40 14-53 9-53 (258)
437 PRK14185 bifunctional 5,10-met 93.1 0.31 6.7E-06 44.2 6.9 39 127-172 196-234 (293)
438 PRK07984 enoyl-(acyl carrier p 93.1 0.47 1E-05 42.2 8.1 31 14-44 6-42 (262)
439 PRK08628 short chain dehydroge 93.1 0.52 1.1E-05 41.2 8.3 33 15-47 9-44 (258)
440 COG4091 Predicted homoserine d 93.0 4.2 9.2E-05 37.8 13.9 41 12-52 16-60 (438)
441 PRK06125 short chain dehydroge 93.0 0.61 1.3E-05 40.9 8.6 36 20-55 17-52 (259)
442 PRK05600 thiamine biosynthesis 93.0 0.26 5.7E-06 46.3 6.5 33 14-46 42-77 (370)
443 PLN02780 ketoreductase/ oxidor 92.9 0.21 4.5E-06 45.9 5.6 42 14-55 53-98 (320)
444 PRK08223 hypothetical protein; 92.9 0.22 4.8E-06 45.1 5.6 35 14-48 28-65 (287)
445 PRK08159 enoyl-(acyl carrier p 92.8 0.46 9.9E-06 42.4 7.7 30 15-44 11-46 (272)
446 PRK08762 molybdopterin biosynt 92.8 0.23 5.1E-06 46.7 6.0 31 14-44 136-169 (376)
447 PRK14167 bifunctional 5,10-met 92.8 0.34 7.4E-06 44.1 6.6 28 14-41 158-192 (297)
448 TIGR03649 ergot_EASG ergot alk 92.7 0.37 7.9E-06 43.1 6.9 32 15-46 1-35 (285)
449 PRK08690 enoyl-(acyl carrier p 92.7 0.69 1.5E-05 40.9 8.6 30 15-44 7-42 (261)
450 PRK08594 enoyl-(acyl carrier p 92.7 0.49 1.1E-05 41.7 7.6 30 15-44 8-43 (257)
451 PRK07904 short chain dehydroge 92.7 0.58 1.3E-05 41.2 8.1 41 14-54 9-54 (253)
452 PRK02472 murD UDP-N-acetylmura 92.7 1.6 3.5E-05 41.8 11.7 33 14-46 6-40 (447)
453 PRK08226 short chain dehydroge 92.7 0.73 1.6E-05 40.4 8.7 33 14-46 7-42 (263)
454 PRK12746 short chain dehydroge 92.7 0.81 1.7E-05 39.8 8.9 40 14-53 7-50 (254)
455 KOG1502|consensus 92.6 1.3 2.7E-05 40.9 10.1 35 14-48 7-44 (327)
456 COG0169 AroE Shikimate 5-dehyd 92.6 0.48 1E-05 42.9 7.3 41 14-54 127-170 (283)
457 PRK06198 short chain dehydroge 92.6 0.78 1.7E-05 40.1 8.7 39 14-52 7-49 (260)
458 PRK06997 enoyl-(acyl carrier p 92.6 0.46 1E-05 42.0 7.2 29 15-43 7-41 (260)
459 PRK09135 pteridine reductase; 92.5 0.8 1.7E-05 39.5 8.6 31 14-44 7-40 (249)
460 PRK06484 short chain dehydroge 92.5 0.56 1.2E-05 45.8 8.4 39 15-53 6-48 (520)
461 PRK07069 short chain dehydroge 92.5 0.86 1.9E-05 39.5 8.8 39 16-54 2-44 (251)
462 PRK08416 7-alpha-hydroxysteroi 92.5 0.75 1.6E-05 40.4 8.5 34 20-53 18-52 (260)
463 PRK12743 oxidoreductase; Provi 92.4 0.84 1.8E-05 40.0 8.7 35 20-54 12-47 (256)
464 PF13241 NAD_binding_7: Putati 92.4 0.43 9.3E-06 36.2 5.9 32 13-44 7-40 (103)
465 PRK12823 benD 1,6-dihydroxycyc 92.4 0.85 1.8E-05 39.9 8.7 26 20-45 18-43 (260)
466 KOG0725|consensus 92.4 1.2 2.7E-05 39.9 9.8 43 13-55 7-53 (270)
467 cd00757 ThiF_MoeB_HesA_family 92.3 0.79 1.7E-05 40.0 8.3 31 14-44 22-55 (228)
468 PRK05690 molybdopterin biosynt 92.3 0.48 1E-05 41.9 7.0 34 14-47 33-69 (245)
469 PRK07877 hypothetical protein; 92.3 0.36 7.7E-06 49.3 6.7 32 14-46 108-143 (722)
470 TIGR01500 sepiapter_red sepiap 92.3 0.84 1.8E-05 40.0 8.5 64 20-98 10-78 (256)
471 PRK07889 enoyl-(acyl carrier p 92.3 0.6 1.3E-05 41.1 7.5 30 15-44 8-43 (256)
472 PRK01710 murD UDP-N-acetylmura 92.2 2.3 5.1E-05 41.0 12.2 33 13-45 14-48 (458)
473 PF00106 adh_short: short chai 92.2 1 2.2E-05 36.3 8.4 35 20-54 10-47 (167)
474 PRK07370 enoyl-(acyl carrier p 92.1 0.53 1.2E-05 41.5 7.1 32 14-45 6-43 (258)
475 PRK07201 short chain dehydroge 92.1 0.74 1.6E-05 46.3 8.9 35 20-54 381-415 (657)
476 TIGR02355 moeB molybdopterin s 92.1 0.47 1E-05 41.8 6.6 34 14-47 25-61 (240)
477 PRK08217 fabG 3-ketoacyl-(acyl 92.0 1.1 2.4E-05 38.8 8.9 42 14-55 6-50 (253)
478 PRK12825 fabG 3-ketoacyl-(acyl 92.0 0.98 2.1E-05 38.8 8.5 34 12-45 5-41 (249)
479 PLN02214 cinnamoyl-CoA reducta 92.0 1.8 3.9E-05 39.9 10.7 34 13-46 10-46 (342)
480 PRK08300 acetaldehyde dehydrog 92.0 1.4 3E-05 40.3 9.6 34 13-46 4-41 (302)
481 COG3967 DltE Short-chain dehyd 91.9 0.75 1.6E-05 39.6 7.2 65 14-99 6-74 (245)
482 PRK06732 phosphopantothenate-- 91.9 0.19 4.1E-06 44.0 3.9 37 8-44 9-50 (229)
483 KOG1205|consensus 91.9 0.63 1.4E-05 42.0 7.2 73 14-101 12-89 (282)
484 PRK12481 2-deoxy-D-gluconate 3 91.9 0.86 1.9E-05 39.9 8.1 30 15-44 9-42 (251)
485 PF00107 ADH_zinc_N: Zinc-bind 91.9 1 2.2E-05 34.9 7.7 31 22-52 2-32 (130)
486 PRK14982 acyl-ACP reductase; P 91.9 0.4 8.8E-06 44.5 6.1 37 14-50 156-197 (340)
487 PRK08278 short chain dehydroge 91.8 1 2.2E-05 40.0 8.6 32 14-45 7-41 (273)
488 PRK00436 argC N-acetyl-gamma-g 91.8 0.62 1.4E-05 43.3 7.4 28 14-41 3-35 (343)
489 PRK09730 putative NAD(P)-bindi 91.8 0.86 1.9E-05 39.3 7.9 34 20-53 11-45 (247)
490 cd01484 E1-2_like Ubiquitin ac 91.8 1.3 2.7E-05 39.0 8.9 34 15-48 1-37 (234)
491 PRK07791 short chain dehydroge 91.7 0.87 1.9E-05 40.9 8.1 30 15-44 7-40 (286)
492 PF03720 UDPG_MGDP_dh_C: UDP-g 91.7 1 2.2E-05 34.3 7.3 49 123-172 54-102 (106)
493 PLN02427 UDP-apiose/xylose syn 91.7 0.49 1.1E-05 44.4 6.6 35 14-48 15-53 (386)
494 PRK09291 short chain dehydroge 91.6 0.92 2E-05 39.5 8.0 38 15-52 4-44 (257)
495 PF10728 DUF2520: Domain of un 91.6 1.2 2.6E-05 35.6 7.8 77 213-291 9-103 (132)
496 PRK05597 molybdopterin biosynt 91.6 0.34 7.3E-06 45.3 5.4 31 14-44 29-62 (355)
497 PRK12747 short chain dehydroge 91.6 1.6 3.4E-05 38.0 9.4 40 15-54 5-49 (252)
498 PRK06123 short chain dehydroge 91.6 1.3 2.9E-05 38.2 8.9 33 20-52 12-45 (248)
499 PRK10637 cysG siroheme synthas 91.6 2.4 5.2E-05 41.0 11.4 37 7-43 4-44 (457)
500 TIGR01850 argC N-acetyl-gamma- 91.5 0.83 1.8E-05 42.6 7.9 31 14-44 1-36 (346)
No 1
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.7e-51 Score=371.39 Aligned_cols=236 Identities=28% Similarity=0.500 Sum_probs=216.5
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
+.+++|+|| |.||++||.+++.+|++|++||++++.++.+.+++.
T Consensus 5 ~~i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~--------------------------------- 51 (321)
T PRK07066 5 TDIKTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVA--------------------------------- 51 (321)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 467899999 999999999999999999999999999887766554
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.++.+.+.|. ......+++++++++++++++||+||||+||++++|+++|+++++.+++++||+
T Consensus 52 ----------~~~~~~~~~~~-----~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIla 116 (321)
T PRK07066 52 ----------NAWPALERQGL-----APGASPARLRFVATIEACVADADFIQESAPEREALKLELHERISRAAKPDAIIA 116 (321)
T ss_pred ----------HHHHHHHHcCC-----ChhhHHhhceecCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 33444444442 223455678889999889999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||+++++++++.+.+|.|++|+|||||++..+++||++|+.|++++++.+..|++.+|++|+++.+|.|||++||++.
T Consensus 117 SnTS~l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~ 196 (321)
T PRK07066 117 SSTSGLLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLE 196 (321)
T ss_pred ECCCccCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999967999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++||++++++|.++++|||++++.|+|++|+.+|||+++|++|.
T Consensus 197 a~~~EA~~lv~eGvas~edID~a~~~g~g~r~~~~Gpf~~~Dl~Gl 242 (321)
T PRK07066 197 ALWREALHLVNEGVATTGEIDDAIRFGAGIRWSFMGTFLTYTLAGG 242 (321)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCccCcCHHHHhhhcCh
Confidence 9999999999999999999999999999999999999999999873
No 2
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=100.00 E-value=3.5e-51 Score=367.33 Aligned_cols=234 Identities=34% Similarity=0.534 Sum_probs=216.9
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||++||..++..|++|+++|++++.++++...+.
T Consensus 1 ~~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~--------------------------------- 47 (307)
T COG1250 1 MEIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIE--------------------------------- 47 (307)
T ss_pred CCccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 468999999 999999999999988999999999999998887765
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. ..+..+++++.++++. ++++||+|||+++|++++|+++|+++++++++++|++
T Consensus 48 ----------~~l~k~~~~g~l~~~-~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlA 115 (307)
T COG1250 48 ----------KNLEKLVEKGKLTEE-EADAALARITPTTDLA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILA 115 (307)
T ss_pred ----------HHHHHHHhcCCCChh-hHHHHHhhccccCchh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEe
Confidence 456677777655431 2356789999999998 6999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||+++++++++.+.+|+||+|+|||||++.++++|+++|..|++++++++.+|.+.+|+.|+.+ .|.|||++||++.
T Consensus 116 SNTSsl~it~ia~~~~rper~iG~HFfNP~~~m~LVEvI~g~~T~~e~~~~~~~~~~~igK~~vv~-~D~pGFi~NRil~ 194 (307)
T COG1250 116 SNTSSLSITELAEALKRPERFIGLHFFNPVPLMPLVEVIRGEKTSDETVERVVEFAKKIGKTPVVV-KDVPGFIVNRLLA 194 (307)
T ss_pred eccCCCCHHHHHHHhCCchhEEEEeccCCCCcceeEEEecCCCCCHHHHHHHHHHHHHcCCCCEee-cCCCceehHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998555 7999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++||++++++|.+++++||.+++.++|+| +|||+++|.+|
T Consensus 195 ~~~~eA~~l~~eGva~~e~ID~~~~~~~G~p---mGpf~l~D~~G 236 (307)
T COG1250 195 ALLNEAIRLLEEGVATPEEIDAAMRQGLGLP---MGPFELADLIG 236 (307)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhccCCC---ccHHHHHHHHh
Confidence 9999999999999999999999999999999 99999999987
No 3
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.6e-47 Score=343.51 Aligned_cols=234 Identities=26% Similarity=0.390 Sum_probs=215.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.+++|+|| |.||++||.+++.+|++|++||++++.++++.+++.
T Consensus 4 ~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~---------------------------------- 49 (286)
T PRK07819 4 AIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIE---------------------------------- 49 (286)
T ss_pred CccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH----------------------------------
Confidence 45799999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhccc-CCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFM-SSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~-~~~~ii~ 168 (294)
+.+++++++|..+.. ...+.+++++++++++ ++++||+||||+||++++|+++|+++++.+ ++++||+
T Consensus 50 ---------~~~~~~~~~g~~~~~-~~~~~~~~l~~~~~~~-~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~ 118 (286)
T PRK07819 50 ---------KSLERAVSRGKLTER-ERDAALARLRFTTDLG-DFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLA 118 (286)
T ss_pred ---------HHHHHHHhcccCChh-hHHHHHhCeEeeCCHH-HhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEE
Confidence 566677777755432 2345788999999995 689999999999999999999999999998 8999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHH-HcCCeeEEEcccccccHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMT-EIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~-~lG~~~v~v~~~~~g~v~nri~ 247 (294)
||||+++++.++..+.+|+|++|+||++|++..+++||+++..|++++++++.+|+. .+|+.|+++ +|.|||+.||++
T Consensus 119 snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T~~~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~nRi~ 197 (286)
T PRK07819 119 SNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVTSEATVARAEEFASDVLGKQVVRA-QDRSGFVVNALL 197 (286)
T ss_pred ECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHhCCCCceEe-cCCCChHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999988 599999999 699999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 248 ~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
.++++|+++++++|.++++|||.+++.|+||| +|||+++|.+|.
T Consensus 198 ~~~~~Ea~~ll~eGv~~~~dID~~~~~g~G~p---~Gpf~~~D~~Gl 241 (286)
T PRK07819 198 VPYLLSAIRMVESGFATAEDIDKAMVLGCAHP---MGPLRLSDLVGL 241 (286)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCC---CCHHHHHHHhcc
Confidence 99999999999999999999999999999999 899999999883
No 4
>KOG2304|consensus
Probab=100.00 E-value=9.3e-49 Score=329.14 Aligned_cols=235 Identities=25% Similarity=0.377 Sum_probs=212.8
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.+++|+|+ |.||++||+..+.+|++|+++|+++..+.++.+.|.+.
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~s-------------------------------- 57 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSS-------------------------------- 57 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHH--------------------------------
Confidence 45789999 99999999999999999999999999999999888743
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCCh----hhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSP----EEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNT 165 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~----~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ 165 (294)
+.+..+++..+..... +..+.+|+.+++..++++++|+|||++.|++++|+++|++|+..+++++
T Consensus 58 -----------l~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~ 126 (298)
T KOG2304|consen 58 -----------LKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSST 126 (298)
T ss_pred -----------HHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccce
Confidence 2233333322222111 2346778888999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHH
Q psy13746 166 ILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNR 245 (294)
Q Consensus 166 ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nr 245 (294)
|+++|||++.+++++...++|.||.|+|||||+..++++|++.++.|+++++..+..|.+.+|+.++-+ +|.||||+||
T Consensus 127 il~tNTSSl~lt~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~~TS~eTf~~l~~f~k~~gKttVac-kDtpGFIVNR 205 (298)
T KOG2304|consen 127 ILATNTSSLSLTDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTDDTSDETFNALVDFGKAVGKTTVAC-KDTPGFIVNR 205 (298)
T ss_pred EEeecccceeHHHHHhhccChhhhceeeccCCchhHHHhhhhcCCCCCHHHHHHHHHHHHHhCCCceee-cCCCchhhhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999987 7999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 246 IQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 246 i~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++.++++||++++++|.++.+|||.+|+.|.||| +||||+.|.+|
T Consensus 206 lLiPyl~ea~r~yerGdAskeDIDtaMklGagyP---MGPfEL~DyvG 250 (298)
T KOG2304|consen 206 LLIPYLMEAIRMYERGDASKEDIDTAMKLGAGYP---MGPFELADYVG 250 (298)
T ss_pred HHHHHHHHHHHHHHhcCCcHhhHHHHHhccCCCC---CChHHHHHHhh
Confidence 9999999999999999999999999999999999 99999999998
No 5
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=7.2e-46 Score=371.16 Aligned_cols=233 Identities=24% Similarity=0.354 Sum_probs=216.3
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
..+++|+|| |.||++||..++.+|++|+++|++++.++++.+++.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~--------------------------------- 357 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAA--------------------------------- 357 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 357899999 999999999999999999999999999988776655
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. .....+++|+++++++ ++++||+||||+||++++|+++|+++++.+++++||+
T Consensus 358 ----------~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ila 425 (715)
T PRK11730 358 ----------KLLNKQVERGKIDGA-KMAGVLSSIRPTLDYA-GFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILA 425 (715)
T ss_pred ----------HHHHHHHHcCCCChh-hHHHHHhCeEEeCCHH-HhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEE
Confidence 556677777755432 2345788999999996 6899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||+++++++++.+.+|+||+|+|||+|++.++++||++|+.|++++++.+..|++.+||.|+++ +|.|||++||++.
T Consensus 426 sNTSsl~i~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~T~~~~~~~~~~~~~~lgk~pv~v-~d~pGfv~nRi~~ 504 (715)
T PRK11730 426 SNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKTSDETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLF 504 (715)
T ss_pred EcCCCCCHHHHHhhcCCCccEEEEecCCcccccceEEeeCCCCCCHHHHHHHHHHHHHhCCceEEe-cCcCchhHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++|++.++++| ++++|||++++.++|+| +|||+++|++|
T Consensus 505 ~~~~ea~~lv~~G-a~~e~ID~a~~~~~G~~---~GP~~~~D~~G 545 (715)
T PRK11730 505 PYFAGFSQLLRDG-ADFRQIDKVMEKQFGWP---MGPAYLLDVVG 545 (715)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHhhCCCc---cCHHHHHHhhc
Confidence 9999999999999 89999999999999999 99999999998
No 6
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=100.00 E-value=8e-46 Score=370.18 Aligned_cols=233 Identities=21% Similarity=0.341 Sum_probs=215.9
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
..+++|+|| |.||++||..++.+|++|+++|++++.++++.+++.
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~--------------------------------- 357 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAA--------------------------------- 357 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 478999999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. ..+..+++++++++++ ++++||+||||+||++++|+++|+++++.+++++||+
T Consensus 358 ----------~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ila 425 (714)
T TIGR02437 358 ----------KLLNKQVERGRITPA-KMAGVLNGITPTLSYA-GFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILA 425 (714)
T ss_pred ----------HHHHHHHHcCCCChh-hHHHHHhCeEEeCCHH-HhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEE
Confidence 556667777654421 2345688999999996 6899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||++++++++..+.+|+|++|+|||+|++.++++||++|+.|++++++.+.+|++.+||.|+++ +|.|||+.||++.
T Consensus 426 snTS~l~i~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v-~d~pGfi~NRl~~ 504 (714)
T TIGR02437 426 SNTSTISISLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEKSSDETIATVVAYASKMGKTPIVV-NDCPGFFVNRVLF 504 (714)
T ss_pred ECCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEeecCCCCCCHHHHHHHHHHHHHcCCEEEEe-CCcccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++|+++++++| +++++||++++.++|+| +|||+++|.+|
T Consensus 505 ~~~~ea~~l~~eG-~~~~~ID~a~~~~~G~p---~GPf~l~D~~G 545 (714)
T TIGR02437 505 PYFGGFSKLLRDG-ADFVRIDKVMEKQFGWP---MGPAYLLDVVG 545 (714)
T ss_pred HHHHHHHHHHHCC-CCHHHHHHHHHhcCCCc---cCHHHHHHhhh
Confidence 9999999999999 79999999999999999 99999999998
No 7
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.5e-45 Score=332.21 Aligned_cols=237 Identities=25% Similarity=0.373 Sum_probs=210.5
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||++||..++.+|++|++||++++.++++.+.+.+..+
T Consensus 1 ~~~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~----------------------------- 51 (287)
T PRK08293 1 MDIKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLAD----------------------------- 51 (287)
T ss_pred CCccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHH-----------------------------
Confidence 457899999 9999999999999999999999999999988776653322
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
++...+.....-.......+++.++|+++++++||+||+|+|++.+.|+.+++++.+.+++++||+
T Consensus 52 --------------~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 117 (287)
T PRK08293 52 --------------RYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFA 117 (287)
T ss_pred --------------HHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEE
Confidence 222222211100012345678889999988999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
+|+|+++++++++.+.+|.||+|+||++|++.++++|+++++.|++++++.+.++++.+|++|+++.+|.|||++||++.
T Consensus 118 sntSt~~~~~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~ 197 (287)
T PRK08293 118 TNSSTLLPSQFAEATGRPEKFLALHFANEIWKNNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLV 197 (287)
T ss_pred ECcccCCHHHHHhhcCCcccEEEEcCCCCCCcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999999977999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++||++++++|.++++|||++++.++|+| +|||+++|++|
T Consensus 198 ~~~~ea~~l~~~g~a~~~~iD~a~~~~~g~~---~Gp~~~~D~~G 239 (287)
T PRK08293 198 PFLSAALALWAKGVADPETIDKTWMIATGAP---MGPFGILDIVG 239 (287)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhccCCC---cCHHHHHHHhc
Confidence 9999999999999999999999999999998 99999999998
No 8
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=100.00 E-value=4.5e-45 Score=351.66 Aligned_cols=233 Identities=26% Similarity=0.375 Sum_probs=214.4
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.+++|+|| |.||++||.+++.+|++|++||++++.++++.+++.
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~---------------------------------- 49 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIE---------------------------------- 49 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH----------------------------------
Confidence 46899999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+.+++++++|.++.. ..++.+++++++++++ ++++||+||||+||+.++|+.+|++++..+++++||+|
T Consensus 50 ---------~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~-~l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~Ilas 118 (503)
T TIGR02279 50 ---------ARLNSLVTKGKLTAE-ECERTLKRLIPVTDLH-ALADAGLVIEAIVENLEVKKALFAQLEELCPADTIIAS 118 (503)
T ss_pred ---------HHHHHHHhcCCCCHH-HHHHHHhccEEeCCHH-HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEE
Confidence 556666666644321 2345778899999997 57899999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHH
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a 249 (294)
|||+++++++++.+.+|.+++|+|||+|+..++++|+++|+.|++++++.+.++++.+|+.|+++ ++.+||+.||++.+
T Consensus 119 nTStl~i~~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~~Ts~e~~~~~~~l~~~lgk~pv~v-~d~pGfi~Nrl~~~ 197 (503)
T TIGR02279 119 NTSSLSITAIAAGLARPERVAGLHFFNPAPVMALVEVVSGLATAAEVAEQLYETALAWGKQPVHC-HSTPGFIVNRVARP 197 (503)
T ss_pred CCCCCCHHHHHHhcCcccceEEEeccCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeeEe-CCCCCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 58999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 250 ~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
+++||+.+++++++++++||++++.++|+| +|||+++|++|
T Consensus 198 ~~~EA~~l~e~g~a~~~~ID~al~~~~G~~---mGPf~l~D~~G 238 (503)
T TIGR02279 198 YYAEALRALEEQVAAPAVLDAALRDGAGFP---MGPFELTDLIG 238 (503)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhcCCCC---cCHHHHHHHhh
Confidence 999999999999999999999999999999 99999999988
No 9
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=100.00 E-value=5.5e-45 Score=364.98 Aligned_cols=233 Identities=19% Similarity=0.278 Sum_probs=215.2
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.+.+++|+|| |.||++||..++.+|++|+++|++++.++++.+++.
T Consensus 332 ~~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~-------------------------------- 379 (737)
T TIGR02441 332 QRPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVF-------------------------------- 379 (737)
T ss_pred CCcccEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHH--------------------------------
Confidence 3578999999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.+++++++|.++.. ..++.+++|++++|++ ++++||+||||+||++++|+++|+++++.+++++||
T Consensus 380 -----------~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~il 446 (737)
T TIGR02441 380 -----------KGLNKKVKRKKITSL-ERDSILSNLTPTLDYS-GFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCII 446 (737)
T ss_pred -----------HHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHH-HhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEE
Confidence 556666777654421 2345778999999997 689999999999999999999999999999999999
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHH
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~ 247 (294)
+||||++++++++..+.+|+|++|+|||+|++.++++||++++.|++++++.+..|++.+||.|+++ +|.|||++||++
T Consensus 447 asNTSsl~i~~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~~Ts~~~~~~~~~~~~~lgk~pv~v-~d~pGFi~NRi~ 525 (737)
T TIGR02441 447 ASNTSALPIKDIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHDGTSKDTLASAVAVGLKQGKVVIVV-KDGPGFYTTRCL 525 (737)
T ss_pred EEcCCCCCHHHHHhhcCCccceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEE-CCcCCchHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999 699999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 248 FAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 248 ~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
.++++||++++++|. ++++||.++. ++|+| +|||+++|.+|
T Consensus 526 ~~~~~ea~~lv~eGv-~~~~ID~a~~-~~G~p---~GP~~l~D~vG 566 (737)
T TIGR02441 526 GPMLAEVIRLLQEGV-DPKKLDKLTT-KFGFP---VGAATLADEVG 566 (737)
T ss_pred HHHHHHHHHHHHcCC-CHHHHHHHHH-HcCCC---CCHHHHHHHhh
Confidence 999999999999997 9999999985 89999 99999999998
No 10
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.1e-44 Score=346.63 Aligned_cols=235 Identities=25% Similarity=0.398 Sum_probs=216.0
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
..+++|+|| |.||++||.+++.+|++|++||++++.++++.+++.
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~--------------------------------- 51 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIA--------------------------------- 51 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 367899999 999999999999999999999999999998877665
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. ..++.++++++++++++ +++||+||||+||+.++|+.+|++++..+++++||+
T Consensus 52 ----------~~l~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~aila 119 (507)
T PRK08268 52 ----------ARLAKLVEKGKLTAE-QADAALARLRPVEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILA 119 (507)
T ss_pred ----------HHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEE
Confidence 556777777654321 23457888999999975 789999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
|||||+++++++..+.+|+|++|+||++|+..++++|+++|+.|++++++.+.++++.+|+.++++ ++.+||+.||++.
T Consensus 120 sntStl~i~~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~~Ts~~~~~~~~~l~~~lgk~pv~v-~d~pGfi~Nrll~ 198 (507)
T PRK08268 120 TNTSSLSITAIAAALKHPERVAGLHFFNPVPLMKLVEVVSGLATDPAVADALYALARAWGKTPVRA-KDTPGFIVNRAAR 198 (507)
T ss_pred ECCCCCCHHHHHhhcCCcccEEEEeecCCcccCeeEEEeCCCCCCHHHHHHHHHHHHHcCCceEEe-cCCCChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 5899999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++|++++++++++++++||++++.++|+| +|||+++|.+|.
T Consensus 199 ~~~~Ea~~l~~~g~~~~~~iD~al~~~~G~~---mGPf~l~D~~Gl 241 (507)
T PRK08268 199 PYYTEALRVLEEGVADPATIDAILREAAGFR---MGPFELMDLIGL 241 (507)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHhcCCCC---cCHHHHHHHhch
Confidence 9999999999999999999999999899999 999999999883
No 11
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=100.00 E-value=2.1e-44 Score=359.76 Aligned_cols=232 Identities=28% Similarity=0.416 Sum_probs=211.3
Q ss_pred CccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.+++|+|| |.||++||..++ .+|++|+++|++++.++++.+++.
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~--------------------------------- 349 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAW--------------------------------- 349 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 57899999 999999999998 589999999999999888776654
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. ..+..+.+|+++++++ ++++||+||||+||++++|+++|+++++.+++++||+
T Consensus 350 ----------~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ila 417 (699)
T TIGR02440 350 ----------KLLDKGVKRRHMTPA-ERDNQMALITGTTDYR-GFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFA 417 (699)
T ss_pred ----------HHHHHHHHcCCCCHH-HHHHHHcCeEEeCChH-HhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 456666666644321 1234678999999996 6899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||+++++++++.+.+|+|++|+|||+|++..+++||++++.|++++++.+..|++.+|+.|+++ +|.|||++||++.
T Consensus 418 snTS~l~i~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~~T~~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~ 496 (699)
T TIGR02440 418 SNTSSLPIGQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHAGTSEQTIATTVALAKKQGKTPIVV-ADKAGFYVNRILA 496 (699)
T ss_pred eCCCCCCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE-ccccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++|+++++++|. ++++||.+++ ++|+| +|||+++|.+|.
T Consensus 497 ~~~~Ea~~l~~~G~-~~~dID~a~~-~~G~p---~GPf~l~D~vGl 537 (699)
T TIGR02440 497 PYMNEAARLLLEGE-PVEHIDKALV-KFGFP---VGPITLLDEVGI 537 (699)
T ss_pred HHHHHHHHHHHCCC-CHHHHHHHHH-HcCCC---cCHHHHHHHhch
Confidence 99999999999995 9999999997 79998 999999999883
No 12
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=100.00 E-value=7e-44 Score=356.80 Aligned_cols=232 Identities=28% Similarity=0.391 Sum_probs=212.5
Q ss_pred CccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.+++|+|| |.||++||..++ .+|++|+++|++++.++++.+++.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~--------------------------------- 354 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSW--------------------------------- 354 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 58899999 999999999999 889999999999999888776654
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.+++++++|.++.. .....+++|+++++++ ++++||+||||+||++++|+++|+++++++++++||+
T Consensus 355 ----------~~l~~~~~~~~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ila 422 (708)
T PRK11154 355 ----------DLLDKKVKRRHLKPS-ERDKQMALISGTTDYR-GFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFA 422 (708)
T ss_pred ----------HHHHHHHHcCCCCHH-HHHHHHhcEEEeCChH-HhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 556666776644321 1245678999999996 7899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
||||++++++|++.+.+|+||+|+|||+|++..+++||++|+.|++++++.+..+++.+|+.|+++ +|.|||+.||++.
T Consensus 423 snTS~l~i~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~~Ts~~~~~~~~~~~~~~gk~pv~v-~d~pGfi~nRl~~ 501 (708)
T PRK11154 423 SNTSSLPIGQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHAKTSAETIATTVALAKKQGKTPIVV-RDGAGFYVNRILA 501 (708)
T ss_pred ECCCCCCHHHHHHhcCcccceEEEecCCccccCceEEEECCCCCCHHHHHHHHHHHHHcCCceEEE-eccCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++|+++++++|. ++++||.+++ ++||| +|||+++|.+|.
T Consensus 502 ~~~~EA~~lv~eGv-~~~dID~a~~-~~G~p---~GPf~~~D~~Gl 542 (708)
T PRK11154 502 PYINEAARLLLEGE-PIEHIDAALV-KFGFP---VGPITLLDEVGI 542 (708)
T ss_pred HHHHHHHHHHHcCC-CHHHHHHHHH-HcCCC---CCHHHHHHHhhh
Confidence 99999999999986 9999999998 79998 899999999883
No 13
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=2.6e-43 Score=319.10 Aligned_cols=233 Identities=27% Similarity=0.469 Sum_probs=206.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||.+++++|++|++||++++.++++.+++.+
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~---------------------------------- 46 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIAS---------------------------------- 46 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHH----------------------------------
Confidence 4689999 9999999999999999999999999999887765441
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.+...++.|.++.. .....+.+++.++++.+++++||+||+|+|++.++|+.+++++.+.++++++|+++
T Consensus 47 ---------~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~ 116 (288)
T PRK09260 47 ---------IFEQGVARGKLTEA-ARQAALARLSYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATN 116 (288)
T ss_pred ---------HHHHHHHcCCCCHH-HHHHHHhCeEEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 12222223322210 11234567888899988899999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHH
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~ 250 (294)
+||++++.+++.+.+|.+++|+||++|++.++++|+++|+.|+++++++++++++.+|++++++ +|.|||+.||++.++
T Consensus 117 tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~~v~v-~d~~Gf~~nRl~~~~ 195 (288)
T PRK09260 117 TSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLETSDETVQVAKEVAEQMGKETVVV-NEFPGFVTSRISALV 195 (288)
T ss_pred CCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcccHHHHHHHHHH
Confidence 9999999999988899999999999999999999999999999999999999999999999999 599999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 251 ~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++||++++++|.++++|||.+++.|+||| +|||+++|.+|
T Consensus 196 ~~ea~~~~~~gv~~~~~iD~~~~~g~g~p---~Gp~~~~D~~G 235 (288)
T PRK09260 196 GNEAFYMLQEGVATAEDIDKAIRLGLNFP---MGPLELGDLVG 235 (288)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhCCCCC---CCHHHHHHHhh
Confidence 99999999999999999999999999998 89999999987
No 14
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=3.4e-43 Score=320.98 Aligned_cols=234 Identities=33% Similarity=0.522 Sum_probs=209.1
Q ss_pred ccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTL 101 (294)
Q Consensus 22 mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~l 101 (294)
||++||..++.+|++|+++|++++.++... +.++++++++++.+
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~------------------------------------~~~~~~~~~i~~~~ 44 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWR------------------------------------ALDAEARAEIERTL 44 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhH------------------------------------HHHHHHHHHHHHHH
Confidence 899999999999999999999996543210 12334555666778
Q ss_pred HHHHhccccCCCCChhhhccCeeeccC--hhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHH
Q psy13746 102 QDYHQKGCLKGSLSPEEQFGLISGTPV--LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL 179 (294)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~i~~~~~--~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~i 179 (294)
++++++|.++.. .....+++++++++ +.+++++||+||||+||++++|+.+|+++++.+++++||+||||+++++++
T Consensus 45 ~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~~~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~l 123 (314)
T PRK08269 45 AALVALGRIDAA-QADAVLARIAVVARDGAADALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDL 123 (314)
T ss_pred HHHHHcCCCChh-hHHHHHhCeEeecCcchHHHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHH
Confidence 888888765432 23456889998765 667889999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHHHHHHHHHHH
Q psy13746 180 SEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVH 259 (294)
Q Consensus 180 a~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~~~Ea~~l~~ 259 (294)
++.+.+|+|++|+||++|++..+++||++++.|+++++++++++++.+|+.++++ +|.+|++.||++.++++|++.+++
T Consensus 124 a~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t~~e~~~~~~~ll~~lGk~~v~v-~d~~Gfi~nri~~~~l~EAl~l~e 202 (314)
T PRK08269 124 QRHVAHPERFLNAHWLNPAYLMPLVEVSPSDATDPAVVDRLAALLERIGKVPVVC-GPSPGYIVPRIQALAMNEAARMVE 202 (314)
T ss_pred HhhcCCcccEEEEecCCccccCceEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe-cCCCCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 588999999999999999999999
Q ss_pred cCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 260 DGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 260 ~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
+++++++++|.+++.|+|+|++.+|||+++|.+|
T Consensus 203 ~g~~~~e~iD~a~~~g~G~~~~~~Gpf~~~D~~G 236 (314)
T PRK08269 203 EGVASAEDIDKAIRTGFGLRFAVLGLLEFIDWGG 236 (314)
T ss_pred hCCCCHHHHHHHHHhCCCCCccCcCHHHHHHhhh
Confidence 9999999999999999999988899999999987
No 15
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=5.4e-43 Score=316.17 Aligned_cols=234 Identities=29% Similarity=0.449 Sum_probs=210.5
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|++++|+|| |.||.+||..++.+|++|++||++++.++++.+.+.
T Consensus 1 ~~~~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~--------------------------------- 47 (282)
T PRK05808 1 MGIQKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATIT--------------------------------- 47 (282)
T ss_pred CCccEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHH---------------------------------
Confidence 456799999 999999999999999999999999999887765554
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.++++.+.|.++.. .......+++++++++ .+++||+||+|+||+.++|+++++++.++++++++|+
T Consensus 48 ----------~~l~~~~~~g~~~~~-~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~ 115 (282)
T PRK05808 48 ----------KSLDRLVKKGKMTEA-DKEAALARITGTTDLD-DLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILA 115 (282)
T ss_pred ----------HHHHHHHHcCCCCHH-HHHHHHhCeEEeCCHH-HhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEE
Confidence 445555666543321 1223456788888887 5899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
|++|+++++.+++.+.+|.|++++||++|++..+++|+++++.|++++++.++++++.+|+.|+++ +|.||++.||++.
T Consensus 116 s~ts~~~~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~t~~e~~~~~~~l~~~lGk~pv~~-~d~~g~i~~Ri~~ 194 (282)
T PRK05808 116 TNTSSLSITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLATSDATHEAVEALAKKIGKTPVEV-KNAPGFVVNRILI 194 (282)
T ss_pred ECCCCCCHHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEe-cCccChHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++|+++++++|.++++|||.+++.|+||| +|||+++|.+|
T Consensus 195 ~~~~ea~~~~~~gv~~~~diD~~~~~g~g~p---~Gp~~~~D~~G 236 (282)
T PRK05808 195 PMINEAIFVLAEGVATAEDIDEGMKLGCNHP---IGPLALADLIG 236 (282)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCCCCC---CCHHHHHHHhh
Confidence 9999999999999999999999999999998 89999999987
No 16
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=7.5e-43 Score=316.58 Aligned_cols=237 Identities=30% Similarity=0.460 Sum_probs=207.5
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||++||..++.+|++|++||++++.++++.+.+.+..
T Consensus 1 ~~i~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~------------------------------ 50 (291)
T PRK06035 1 MDIKVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGP------------------------------ 50 (291)
T ss_pred CCCcEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhh------------------------------
Confidence 457899999 999999999999999999999999999988776654200
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
..++.+++.|..+.. ..++.+.+++.++++. ++++||+||+|+|++.++|+++++++.+.+++++||+
T Consensus 51 ----------~~l~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 51 ----------YGLRNLVEKGKMSED-EAKAIMARIRTSTSYE-SLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred ----------hhHHHHHHcCCCCHH-HHHHHHhCcEeeCCHH-HhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 012223333322110 1123456677778884 7899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
|+||+++++++++.+.+|.|++|+||++|+...+++|+++++.|++++++.+.++++.+|+.|+++ +|.|||+.||++.
T Consensus 119 S~tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~g~~T~~e~~~~~~~~~~~lgk~~v~v-~d~pgfv~nRl~~ 197 (291)
T PRK06035 119 SNTSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIEVVRAALTSEETFNTTVELSKKIGKIPIEV-ADVPGFFTTRFIE 197 (291)
T ss_pred EcCCCCCHHHHHhhcCCcccEEEEecCCCcccCccEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe-CCCCCeeHHHHHH
Confidence 999999999999999899999999999999999999999999999999999999999999999999 5999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++||++++++|.++++|||++++.++|+| +|||+++|++|
T Consensus 198 ~~~~ea~~~~~~g~a~~~~iD~~~~~~~g~~---~Gp~~~~D~~G 239 (291)
T PRK06035 198 GWLLEAIRSFEIGIATIKDIDEMCKLAFGFP---MGPFELMDIIG 239 (291)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhhcCCCc---cCHHHHHHHhh
Confidence 9999999999999999999999999999999 99999999988
No 17
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=6.5e-42 Score=310.59 Aligned_cols=235 Identities=27% Similarity=0.374 Sum_probs=207.6
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||.+||..++.+|++|++||++++.++++.+.+.+
T Consensus 2 ~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~-------------------------------- 49 (292)
T PRK07530 2 MAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATING-------------------------------- 49 (292)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHH--------------------------------
Confidence 557899999 9999999999999999999999999998887665542
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.+..+.+.|.++.. .....+.+++++++++ ++++||+||+|+|++.++|+.+++++.+.++++++|+
T Consensus 50 -----------~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~-~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 50 -----------NLARQVAKGKISEE-ARAAALARISTATDLE-DLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -----------HHHHHHHcCCCCHH-HHHHHHhCeEeeCCHH-HhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEE
Confidence 23333333432211 1123456688888886 5899999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
|+||+++++.+++.+.+|.+++|+||++|++..+++|++++..|++++++.+.++++.+|+.++++ +|.|||+.||++.
T Consensus 117 s~ts~~~~s~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~~t~~~~~~~~~~~~~~~gk~~v~~-~d~pg~i~nRl~~ 195 (292)
T PRK07530 117 TNTSSISITRLASATDRPERFIGIHFMNPVPVMKLVELIRGIATDEATFEAAKEFVTKLGKTITVA-EDFPAFIVNRILL 195 (292)
T ss_pred EcCCCCCHHHHHhhcCCcccEEEeeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe-cCcCChHHHHHHH
Confidence 999999999999988889999999999999899999999999999999999999999999999998 6999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++|+++++++|..++++||.+++.|+||| +|||+++|.+|.
T Consensus 196 ~~~~ea~~~~~~g~~~~~~iD~~~~~g~g~~---~GP~~~~D~~Gl 238 (292)
T PRK07530 196 PMINEAIYTLYEGVGSVEAIDTAMKLGANHP---MGPLELADFIGL 238 (292)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHhCCCCC---CCHHHHHHHhhh
Confidence 9999999999999999999999999999999 999999999873
No 18
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=100.00 E-value=1.5e-41 Score=308.60 Aligned_cols=234 Identities=29% Similarity=0.417 Sum_probs=208.4
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.+++|+|| |.||++||..++.+|++|++||++++.++++++.+.
T Consensus 3 ~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~---------------------------------- 48 (295)
T PLN02545 3 EIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSIS---------------------------------- 48 (295)
T ss_pred CcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH----------------------------------
Confidence 46789999 999999999999999999999999999887766554
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+.++++++.|.++.. .....+++++++++++ ++++||+||+|+||+.++|+.+++++.+.+++++||+|
T Consensus 49 ---------~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~-~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s 117 (295)
T PLN02545 49 ---------SSLARLVKKGKMSQE-EADATLGRIRCTTNLE-ELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILAS 117 (295)
T ss_pred ---------HHHHHHHHcCCCCHH-HHHHHHhceEeeCCHH-HhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEE
Confidence 445555555533211 1123445677777775 68999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHH
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a 249 (294)
++|+++++++++.+.++.+++|+||++|+..++++|+++++.|+++++++++++++.+|+.++++ ++.+|++.||++.+
T Consensus 118 ~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~~~~-~d~~g~i~nri~~~ 196 (295)
T PLN02545 118 NTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSDEVFDATKALAERFGKTVVCS-QDYPGFIVNRILMP 196 (295)
T ss_pred CCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEe-cCcccHHHHHHHHH
Confidence 99999999999988889999999999999999999999999999999999999999999999998 69999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 250 ~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
+++|+++++++|.+++++||.+++.|+||| +|||+++|.+|.
T Consensus 197 ~~~ea~~~~~~gv~~~~~iD~~~~~g~g~~---~Gp~~~~D~~Gl 238 (295)
T PLN02545 197 MINEAFYALYTGVASKEDIDTGMKLGTNHP---MGPLHLADFIGL 238 (295)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHhccCCC---CCHHHHHHHhch
Confidence 999999999999999999999999999999 899999999883
No 19
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1e-39 Score=298.32 Aligned_cols=236 Identities=44% Similarity=0.747 Sum_probs=211.2
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||..++++|++|++||++++.++.+.+.+.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~----------------------------------- 46 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIA----------------------------------- 46 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHH-----------------------------------
Confidence 4689999 999999999999999999999999999887766544
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
..+..+.+.|.+++. .....+++++.++++.+++++||+||+|+|++.++|+.+++++.+.++++++++++
T Consensus 47 --------~~l~~l~~~g~~~~~-~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ss 117 (308)
T PRK06129 47 --------GRLEDLAAFDLLDGE-APDAVLARIRVTDSLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASS 117 (308)
T ss_pred --------HHHHHHHHcCCCchh-hHHHHhcCeEEECcHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEe
Confidence 344555555544321 22345667888899988899999999999999999999999999988999999999
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHH
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~ 250 (294)
||+..+.++++.+.++.++++.||++|+...+++|+++++.|+++++++++++++.+|+++++++++.+|+++||++.++
T Consensus 118 ts~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~ 197 (308)
T PRK06129 118 TSALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGAL 197 (308)
T ss_pred CCCCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHH
Confidence 99998889999888999999999999998889999999999999999999999999999999997799999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhccc
Q psy13746 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLN 292 (294)
Q Consensus 251 ~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~ 292 (294)
++||+.+++++++|++++|++++.|+|++|+.+|||++.|..
T Consensus 198 ~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~ 239 (308)
T PRK06129 198 LREAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLN 239 (308)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhcc
Confidence 999999999999999999999999999999889999999974
No 20
>KOG2305|consensus
Probab=100.00 E-value=2e-40 Score=279.13 Aligned_cols=239 Identities=54% Similarity=0.915 Sum_probs=228.0
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|++.||+|+ |.+|++||..|++.||+|-+||+.++++..+.+.++
T Consensus 1 ms~~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~--------------------------------- 47 (313)
T KOG2305|consen 1 MSFGKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVE--------------------------------- 47 (313)
T ss_pred CCccceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHH---------------------------------
Confidence 567899999 999999999999999999999999999988777654
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+.++++-+.|..+|.++.++.+..|+.+++++|++++|=.|-||+||++++|+.+++++++.+.+.+|++
T Consensus 48 ----------Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIla 117 (313)
T KOG2305|consen 48 ----------KELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILA 117 (313)
T ss_pred ----------HHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEe
Confidence 7788888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHH
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~ 248 (294)
|+||++.++.+.+.+.+.++++-.||.|||+..+++|++|.+.|+|+++++.+++++.+|.+|+...++.-||..||+..
T Consensus 118 SSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPwTsp~tVdrt~~lM~sigq~pV~l~rei~Gf~lnriq~ 197 (313)
T KOG2305|consen 118 SSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPWTSPDTVDRTRALMRSIGQEPVTLKREILGFALNRIQY 197 (313)
T ss_pred ccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCCCChhHHHHHHHHHHHhCCCCcccccccccceeccccH
Confidence 99999999988888989999999999999999999999999999999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhccc
Q psy13746 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLN 292 (294)
Q Consensus 249 a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~ 292 (294)
+++||.-+++..|+++..|+|..|+.|.|.+++..||+|++.++
T Consensus 198 Ailne~wrLvasGil~v~dvD~VmS~GLG~RYAflG~lET~HLN 241 (313)
T KOG2305|consen 198 AILNETWRLVASGILNVNDVDAVMSAGLGPRYAFLGPLETAHLN 241 (313)
T ss_pred HHHHHHHHHHHccCcchhhHHHHHhcCCCcchhcccchhhhhcC
Confidence 99999999999999999999999999999999999999998764
No 21
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=100.00 E-value=7.8e-39 Score=309.26 Aligned_cols=233 Identities=37% Similarity=0.566 Sum_probs=205.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||..|+++|++|++||+++++++...+.+.+..
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~-------------------------------- 51 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAE-------------------------------- 51 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHH--------------------------------
Confidence 5789999 999999999999999999999999999876544322110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+.+..+. . .+....+++++++++.+++++||+||+|+||+.++|+.+|+++.+.+++++||+|+
T Consensus 52 --------~~~~~l~------~--~~~~~~g~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~Ss 115 (495)
T PRK07531 52 --------RAYAMLT------D--APLPPEGRLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSS 115 (495)
T ss_pred --------HHHhhhc------c--chhhhhhceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEc
Confidence 0111000 0 00112235678889988899999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHH
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~ 250 (294)
||+++++.+++.+.++.++++.||++|++.++++++++|+.|+++++++++++++.+|+++++++++.+||+.||++.++
T Consensus 116 Tsgi~~s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~ 195 (495)
T PRK07531 116 TSGFLPSDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEAL 195 (495)
T ss_pred CCCCCHHHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999997799999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 251 ~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++||+.+++++++|++++|++++.|+|.+|+.+|||++.|+.|
T Consensus 196 ~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~~~Gpf~~~dl~g 238 (495)
T PRK07531 196 WREALWLVKDGIATTEEIDDVIRYSFGLRWAQMGLFETYRIAG 238 (495)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhhccCCCccccchHHHHHhcC
Confidence 9999999999999999999999999999999999999999987
No 22
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=100.00 E-value=1e-37 Score=285.41 Aligned_cols=233 Identities=33% Similarity=0.521 Sum_probs=203.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||..|+++|++|++||++++.++++.+.+.+.
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~--------------------------------- 50 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERA--------------------------------- 50 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHH---------------------------------
Confidence 5799999 99999999999999999999999999988776644311
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+......+. ....+.+++.++++.+++++||+||+|+|++.+.|+.+++++.+.++++++|+|+
T Consensus 51 ----------~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~ 114 (311)
T PRK06130 51 ----------LGVYAPLGI------ASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATN 114 (311)
T ss_pred ----------HHHhhhccc------HHHHhhceEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEEC
Confidence 111100000 0012345677788887889999999999999989999999999999999999999
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHH
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~ 250 (294)
+|+++++.+++.+.++.+++++||++|+..++++++++++.++++.++.++++++.+|+.++++.++.+|+++||++.++
T Consensus 115 tsg~~~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~~~~~~~v~~l~~~~G~~~v~~~~d~~G~i~nr~~~~~ 194 (311)
T PRK06130 115 TSGLPITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQTVATTMALLRSIGKRPVLVKKDIPGFIANRIQHAL 194 (311)
T ss_pred CCCCCHHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEEcCCCCCcHHHHHHHHH
Confidence 99999999998888889999999999999888999999999999999999999999999999997688999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 251 ~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++||+.++++++++++++|.+++.++|||++.+|||+++|.+|.
T Consensus 195 ~~Ea~~l~~~g~~~~~~id~~~~~~~g~~~~~~Gp~~~~D~~Gl 238 (311)
T PRK06130 195 AREAISLLEKGVASAEDIDEVVKWSLGIRLALTGPLEQRDMNGL 238 (311)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhcCCCCccCCCHHHHhhhhcc
Confidence 99999999999999999999999999999888999999999873
No 23
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=100.00 E-value=1.3e-36 Score=256.87 Aligned_cols=177 Identities=35% Similarity=0.566 Sum_probs=146.8
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||++||..++.+|++|++||++++.++++.+++.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~------------------------------------- 43 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIE------------------------------------- 43 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHH-------------------------------------
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHH-------------------------------------
Confidence 68999 999999999999999999999999999998887765
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
+.|++++++|..+.. .....++++++++|++++. +||+||||+||++++|+++|+++++.+++++||+||||
T Consensus 44 ------~~l~~~~~~~~~~~~-~~~~~~~~i~~~~dl~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTS 115 (180)
T PF02737_consen 44 ------RLLDRLVRKGRLSQE-EADAALARISFTTDLEEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTS 115 (180)
T ss_dssp ------HHHHHHHHTTTTTHH-HHHHHHHTEEEESSGGGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--S
T ss_pred ------HHHhhhhhhccchhh-hhhhhhhhcccccCHHHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCC
Confidence 445556665533210 1245678899999999765 99999999999999999999999999999999999999
Q ss_pred CCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 173 SFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 173 t~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
++++++++..+.+|+|++|+|||+|++..+++||++++.|++++++++..|++.+|+.|+++ +|
T Consensus 116 sl~i~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T~~~~~~~~~~~~~~~gk~pv~v-~D 179 (180)
T PF02737_consen 116 SLSISELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKTSPETVDRVRALLRSLGKTPVVV-KD 179 (180)
T ss_dssp SS-HHHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS-HHHHHHHHHHHHHTT-EEEEE-ES
T ss_pred CCCHHHHHhccCcCceEEEEecccccccCceEEEeCCCCCCHHHHHHHHHHHHHCCCEEEEe-cC
Confidence 99999999999999999999999999999999999999999999999999999999999998 45
No 24
>KOG1683|consensus
Probab=99.95 E-value=3.7e-28 Score=218.40 Aligned_cols=222 Identities=22% Similarity=0.266 Sum_probs=196.6
Q ss_pred ccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTL 101 (294)
Q Consensus 22 mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~l 101 (294)
||++||..+..+|++|++.|.+...++++...+. ..+
T Consensus 1 MG~gia~~~~~~~i~~vl~~~n~~~~~~~~~~v~-------------------------------------------a~l 37 (380)
T KOG1683|consen 1 MGAGIAIVFILAGIRTVLVDANVALLARGILQLA-------------------------------------------AHL 37 (380)
T ss_pred CcchHHHHHHHcCCcEEEEeccHHHHHHhHHHHH-------------------------------------------Hhh
Confidence 8999999999999999999999888776655433 333
Q ss_pred HHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHh
Q psy13746 102 QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSE 181 (294)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~ 181 (294)
++.+.++.+++. ..+....++..+.|+. .++++|+|||++.||+++|++++.+|++.++++||+++|||++++..+++
T Consensus 38 ~~~~~~~~~~~~-~~~~~~~~L~~~~Dy~-~~~~~dmvieav~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~isa 115 (380)
T KOG1683|consen 38 NSEVKRGRLSGL-EREKTKSNLVETLDYT-GFANADMVIEAVFEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINVISA 115 (380)
T ss_pred hHHHhhcccccc-chhhhhhhcccccccc-cccccceeccchhhhHHHHHHHHHHHHhhcCCcceeeeccccCChHHHhh
Confidence 334444444332 2234455677788887 58999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHHHHHHHHHHHcC
Q psy13746 182 HSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDG 261 (294)
Q Consensus 182 ~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~~~Ea~~l~~~~ 261 (294)
.+..|++++|.||+.|.+.++++||+.+..|+..++..+.+.-...|+.|++| ++++||.+||++..+++++..+..+-
T Consensus 116 ~ld~~e~vvg~h~fspa~~m~LlEii~~~~tS~~~iA~Ain~~~~~gk~~vvV-g~c~gf~v~r~l~~y~~~~~~~l~e~ 194 (380)
T KOG1683|consen 116 GLDRPEMVVGMHFFSPAHWMQLLEIILALYTSKLTIATAINGGSPAGKLPVVV-GNCCGFRVNRLLPPYTIGLNELLLEI 194 (380)
T ss_pred ccCchhhhccccccCHHHHHHHHHHHHhcCCCchHHHHHHhcccccCCccEEe-ccCCceEEEecccHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999 59999999999999999999999998
Q ss_pred CCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 262 VLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 262 ~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
++++.++|+.++. ||++ +||+.+.|.+|
T Consensus 195 g~~p~~iD~~~t~-fGf~---~g~~~L~d~~g 222 (380)
T KOG1683|consen 195 GADPWLIDSLITK-FGFR---VGERALADGVG 222 (380)
T ss_pred CCCHHHHHHHHHh-cCcc---ccHHHHhhccC
Confidence 8999999999995 9999 99999999887
No 25
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.92 E-value=1.6e-23 Score=186.80 Aligned_cols=193 Identities=18% Similarity=0.219 Sum_probs=153.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH-HHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI-ENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.||.+||.+|.++||+|++|||++++. +.+.+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~-------------------------------------- 42 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA-------------------------------------- 42 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH--------------------------------------
Confidence 489999 9999999999999999999999999883 32221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILS 168 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~ 168 (294)
.| .....++.++++++|+||.|+|++.+++..++ ..+.+.++++++++
T Consensus 43 ----------------~G--------------a~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~I 92 (286)
T COG2084 43 ----------------AG--------------ATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVI 92 (286)
T ss_pred ----------------cC--------------CcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEE
Confidence 23 23456778899999999999999998877777 46888899999998
Q ss_pred ecCCCCCHHH---HHhhcCCCCceeeeeecCCC-CC------CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 169 SSTSSFLPSV---LSEHSTHRSQFIVAHPVNPP-YF------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 169 s~tSt~~~~~---ia~~l~~~~~~ig~h~~~p~-~~------~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
+ .||++++. +++.+. -.|.+|++.| .. ...+.|+.| .+++.+++++++|+.+|++++++++.+
T Consensus 93 D-mSTisp~~a~~~a~~~~----~~G~~~lDAPVsGg~~~A~~GtLtimvG--G~~~~f~r~~pvl~~~g~~i~~~G~~G 165 (286)
T COG2084 93 D-MSTISPETARELAAALA----AKGLEFLDAPVSGGVPGAAAGTLTIMVG--GDAEAFERAKPVLEAMGKNIVHVGPVG 165 (286)
T ss_pred E-CCCCCHHHHHHHHHHHH----hcCCcEEecCccCCchhhhhCceEEEeC--CCHHHHHHHHHHHHHhcCceEEECCCC
Confidence 5 56777763 333332 3467777744 22 235555655 589999999999999999999998776
Q ss_pred ccc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcC
Q psy13746 239 RGF---ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYA 281 (294)
Q Consensus 239 ~g~---v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~ 281 (294)
.|. ++|+++. ..+.||+.++++.|+|++.+.++++.+++.+|.
T Consensus 166 ~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~ 215 (286)
T COG2084 166 AGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWI 215 (286)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChH
Confidence 665 7888875 468999999999999999999999998888873
No 26
>KOG0409|consensus
Probab=99.86 E-value=2.1e-20 Score=164.62 Aligned_cols=195 Identities=19% Similarity=0.191 Sum_probs=150.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.++|+|| |.||++|+.+|.++||+|++|||+.+++++.++
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~-------------------------------------- 76 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQE-------------------------------------- 76 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHH--------------------------------------
Confidence 5799999 999999999999999999999999988776543
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHH--HhcccCCCeEEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILS 168 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~--l~~~~~~~~ii~ 168 (294)
.|. +...++.|.+++||+||.|+|.+..++..++.. +.+.++++....
T Consensus 77 ----------------~Ga--------------~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~ 126 (327)
T KOG0409|consen 77 ----------------AGA--------------RVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKKAT 126 (327)
T ss_pred ----------------hch--------------hhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCceE
Confidence 231 345788888999999999999999888777753 445455655442
Q ss_pred ecCCCCCHH---HHHhhcCCCCceeeeeecCCC-CC------CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 169 SSTSSFLPS---VLSEHSTHRSQFIVAHPVNPP-YF------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 169 s~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~-~~------~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
..+||+++. +|++.+. ..+..|++.| +. ...+.|+.| ++++.++++.++|+.+|+++++++.-+
T Consensus 127 vDmSTidp~~s~ei~~~i~----~~~~~~vDAPVSGg~~~A~~G~Ltimag--Gde~~~~~~~~~~~~mGk~~~~~G~~G 200 (327)
T KOG0409|consen 127 VDMSTIDPDTSLEIAKAIS----NKGGRFVDAPVSGGVKGAEEGTLTIMAG--GDEALFEAASPVFKLMGKNVVFLGGVG 200 (327)
T ss_pred EeccccCHHHHHHHHHHHH----hCCCeEEeccccCCchhhhcCeEEEEec--CcHHHHHHHHHHHHHhcceEEEecccC
Confidence 245666665 5555543 2355555533 32 235666666 699999999999999999999997555
Q ss_pred ccc---HHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHcccCCCcC
Q psy13746 239 RGF---ALNRIQFA----VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYA 281 (294)
Q Consensus 239 ~g~---v~nri~~a----~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~ 281 (294)
.|. ++|+|+.+ .++|++.++++.++|+..+..++..|..|++-
T Consensus 201 nG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~ 250 (327)
T KOG0409|consen 201 NGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSM 250 (327)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHH
Confidence 554 78888753 58999999999999999999999988777763
No 27
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.85 E-value=4.8e-20 Score=167.20 Aligned_cols=191 Identities=18% Similarity=0.255 Sum_probs=142.7
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||++||..|++.|++|++||+++++++++.+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~---------------------------------------- 40 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLA---------------------------------------- 40 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------------------------
Confidence 58999 999999999999999999999999988665432
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH--HHhcccCCCeEEEec
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSS 170 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ 170 (294)
.|. ...++..+++++||+||+|+|++..++..++. .+...++++++|++
T Consensus 41 --------------~g~--------------~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd- 91 (291)
T TIGR01505 41 --------------AGA--------------VTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVD- 91 (291)
T ss_pred --------------CCC--------------cccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEE-
Confidence 121 12356667889999999999998777665543 36667788888874
Q ss_pred CCCCCHH---HHHhhcCCCCceeeeeecCCCC-------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc
Q psy13746 171 TSSFLPS---VLSEHSTHRSQFIVAHPVNPPY-------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 240 (294)
Q Consensus 171 tSt~~~~---~ia~~l~~~~~~ig~h~~~p~~-------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g 240 (294)
+|+..+. ++.+.+..+ |.||+++|. ....+.++.+ ++++.+++++++++.+|++++++++.++|
T Consensus 92 ~st~~~~~~~~l~~~l~~~----g~~~~~~pv~g~~~~a~~g~l~i~~g--g~~~~~~~~~~ll~~lg~~~~~~g~~g~a 165 (291)
T TIGR01505 92 MSSISPIESKRFAKAVKEK----GIDYLDAPVSGGEIGAIEGTLSIMVG--GDQAVFDRVKPLFEALGKNIVLVGGNGDG 165 (291)
T ss_pred CCCCCHHHHHHHHHHHHHc----CCCEEecCCCCCHHHHhcCCEEEEec--CCHHHHHHHHHHHHHhcCCeEEeCCCCHH
Confidence 5565554 454444321 444444321 1223445555 47899999999999999999999765666
Q ss_pred ---cHHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 241 ---FALNRIQFA----VLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 241 ---~v~nri~~a----~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
.++|+++.+ .++|++.++++.+++++++.+++..+.+.++
T Consensus 166 ~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~ 212 (291)
T TIGR01505 166 QTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGST 212 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCH
Confidence 378888765 4899999999999999999999998777653
No 28
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.85 E-value=1.4e-20 Score=182.32 Aligned_cols=131 Identities=18% Similarity=0.199 Sum_probs=118.9
Q ss_pred ccCCCeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 160 FMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 160 ~~~~~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
...++.++.+..++.+.+..+....+|.+++|+||++|++..+++||+++..|++++++.+.+|++.+|+.|+.+ +|.+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~r~vg~Hf~~P~~~~~lvEvv~~~~Ts~e~~~~~~~~~~~~gk~pi~v-~d~~ 415 (507)
T PRK08268 337 PSADGLVLLAPTGGDTTTAAAREGLDAARVVLIDLLLDYAAAKRRTLMAAPATSPAARDAAHALFQQDGKAVSVI-RDSP 415 (507)
T ss_pred cccccceEeeccCcchHHHHHHhcCCcccEEEEeccCCcccCceEEEeCCCCCCHHHHHHHHHHHHHcCCeeEEe-CCCc
Confidence 345677777666666566665555688999999999999999999999999999999999999999999999999 6999
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 240 GFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 240 g~v~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
|++.||++.++++||++++++|.++++|||.+++.|+||| +|||+|+|.+|.
T Consensus 416 Gfi~nRll~~~~nEa~~ll~eGvas~~dID~a~~~g~G~p---~GP~~~~D~~Gl 467 (507)
T PRK08268 416 GFVAQRTVAMIVNEAADIAQQGIASPADIDLAMRLGLNYP---LGPLAWGDRLGA 467 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcCCCC---cCHHHHHHHhCH
Confidence 9999999999999999999999999999999999999999 899999999883
No 29
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.84 E-value=1.6e-19 Score=164.06 Aligned_cols=191 Identities=16% Similarity=0.201 Sum_probs=143.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.++|..+++.|++|++||++++.++++.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~--------------------------------------- 43 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA--------------------------------------- 43 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH---------------------------------------
Confidence 589999 999999999999999999999999987654321
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
.| ...++++.+++++||+||+|+|++..++..++ .++.+.++++++|+
T Consensus 44 ---------------~g--------------~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iii- 93 (296)
T PRK11559 44 ---------------AG--------------AETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVI- 93 (296)
T ss_pred ---------------CC--------------CeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEE-
Confidence 12 23456777788999999999999877665554 34677788899887
Q ss_pred cCCCCCHH---HHHhhcCCCCceeeeeecCCCCC-------CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 170 STSSFLPS---VLSEHSTHRSQFIVAHPVNPPYF-------IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 170 ~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~~~-------~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
++|+..+. ++++.+.. .|.||+++|.. ...+.++.| ++++.+++++++++.+|+.++++++.++
T Consensus 94 d~st~~~~~~~~l~~~~~~----~g~~~~d~pv~g~~~~a~~g~l~i~~g--g~~~~~~~~~~~l~~~~~~~~~~g~~g~ 167 (296)
T PRK11559 94 DMSSIAPLASREIAAALKA----KGIEMLDAPVSGGEPKAIDGTLSVMVG--GDKAIFDKYYDLMKAMAGSVVHTGDIGA 167 (296)
T ss_pred ECCCCCHHHHHHHHHHHHH----cCCcEEEcCCCCCHHHHhhCcEEEEEC--CCHHHHHHHHHHHHHhcCCeEEeCCcCH
Confidence 45555554 34444432 25566654422 133445555 4789999999999999999999965566
Q ss_pred cc---HHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHcccCCC
Q psy13746 240 GF---ALNRIQFA----VLNECYHLVHDGVLSAKDIDRVMSEGLGLR 279 (294)
Q Consensus 240 g~---v~nri~~a----~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~ 279 (294)
|. ++|+++.+ .++|++.++++.++++++++++++.+++.+
T Consensus 168 a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s 214 (296)
T PRK11559 168 GNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGS 214 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccC
Confidence 66 47777644 689999999999999999999999877654
No 30
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.81 E-value=2.8e-18 Score=156.04 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=138.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.+||..|+++|++|++||+++++++++.+
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~--------------------------------------- 42 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVD--------------------------------------- 42 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH---------------------------------------
Confidence 489999 999999999999999999999999988765432
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
.| ...+.++.+++++||+||.|+|++..++..+. ..+.+.++++++++
T Consensus 43 ---------------~g--------------~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvi- 92 (296)
T PRK15461 43 ---------------KG--------------ATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVI- 92 (296)
T ss_pred ---------------cC--------------CcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEE-
Confidence 12 12346777788999999999999876655443 24566677888886
Q ss_pred cCCCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc-
Q psy13746 170 STSSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF- 241 (294)
Q Consensus 170 ~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~- 241 (294)
++||..+.. +++.+. +..+|+.......+ ..+.+..++.| +++.+++++++|+.+|++++++++.+.|.
T Consensus 93 d~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg---~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~ 169 (296)
T PRK15461 93 DMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGG---TAEQVERATPILMAMGNELINAGGPGMGIR 169 (296)
T ss_pred ECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECC---CHHHHHHHHHHHHHHcCCeEeeCCCCHHHH
Confidence 566766653 333332 33344443222211 12345545554 88999999999999999999986443442
Q ss_pred --HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccC
Q psy13746 242 --ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLG 277 (294)
Q Consensus 242 --v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g 277 (294)
++|+++. ..++|++.++++.|+|++.+.+++..+.+
T Consensus 170 ~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~ 211 (296)
T PRK15461 170 VKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAA 211 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcc
Confidence 5666543 46799999999999999999999986644
No 31
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.80 E-value=6.6e-18 Score=153.01 Aligned_cols=184 Identities=18% Similarity=0.181 Sum_probs=137.7
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQH 99 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 99 (294)
|.||.+||..|+++|++|++||+++++++.+.+
T Consensus 5 G~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----------------------------------------------- 37 (288)
T TIGR01692 5 GNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----------------------------------------------- 37 (288)
T ss_pred cHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH-----------------------------------------------
Confidence 999999999999999999999999988765432
Q ss_pred HHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH---HHHhcccCCCeEEEecCCCCCH
Q psy13746 100 TLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY---RAIDIFMSSNTILSSSTSSFLP 176 (294)
Q Consensus 100 ~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~---~~l~~~~~~~~ii~s~tSt~~~ 176 (294)
.| ...++++.++++++|+||.|+|.+..++ .++ .++.+.+++++++++ +||+.+
T Consensus 38 -------~g--------------~~~~~s~~~~~~~advVil~vp~~~~~~-~v~~g~~~l~~~~~~g~~vid-~st~~p 94 (288)
T TIGR01692 38 -------AG--------------AQAAASPAEAAEGADRVITMLPAGQHVI-SVYSGDEGILPKVAKGSLLID-CSTIDP 94 (288)
T ss_pred -------cC--------------CeecCCHHHHHhcCCEEEEeCCChHHHH-HHHcCcchHhhcCCCCCEEEE-CCCCCH
Confidence 12 2345678888999999999999876554 444 567777888888874 557777
Q ss_pred HHH---HhhcCCCCceeeeeecCCC--------CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc---H
Q psy13746 177 SVL---SEHSTHRSQFIVAHPVNPP--------YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF---A 242 (294)
Q Consensus 177 ~~i---a~~l~~~~~~ig~h~~~p~--------~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~---v 242 (294)
+.. ++.+.. .|.+|.+.| ..+.+..++.| +++.+++++++|+.+|++++++++.+.|. +
T Consensus 95 ~~~~~~~~~~~~----~g~~~vdaPv~Gg~~~a~~g~l~~~~gg---~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~Kl 167 (288)
T TIGR01692 95 DSARKLAELAAA----HGAVFMDAPVSGGVGGARAGTLTFMVGG---VAEEFAAAEPVLGPMGRNIVHCGDHGAGQAAKI 167 (288)
T ss_pred HHHHHHHHHHHH----cCCcEEECCCCCCHHHHhhCcEEEEECC---CHHHHHHHHHHHHHhcCCeEeeCCCCHHHHHHH
Confidence 643 333321 244444422 22445555555 78899999999999999999997545554 6
Q ss_pred HHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 243 LNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 243 ~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
+|+++. ..++|++.++++.|+|++++.++++.+.|.+|
T Consensus 168 ~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~ 209 (288)
T TIGR01692 168 CNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCW 209 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCc
Confidence 666653 35889999999999999999999998887765
No 32
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.79 E-value=9.6e-18 Score=152.15 Aligned_cols=192 Identities=17% Similarity=0.209 Sum_probs=139.5
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||.+||.+|.++|++|++||+++. .++..
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~----------------------------------------- 39 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELL----------------------------------------- 39 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHH-----------------------------------------
Confidence 69999 99999999999999999999999873 22211
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH--HHhcccCCCeEEEec
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILSSS 170 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~s~ 170 (294)
+.| .....+..+++++||+||.|+|++..++..++. .+...+.++.+|++
T Consensus 40 -------------~~g--------------~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd- 91 (292)
T PRK15059 40 -------------SLG--------------AVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVD- 91 (292)
T ss_pred -------------HcC--------------CeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEE-
Confidence 112 123456777789999999999998766655543 25556678888874
Q ss_pred CCCCCHHH---HHhhcC-CCCceeeeeecCCC----CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc-
Q psy13746 171 TSSFLPSV---LSEHST-HRSQFIVAHPVNPP----YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF- 241 (294)
Q Consensus 171 tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~----~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~- 241 (294)
+||+++.. +++.+. +..+|+.. |+... ..+.+..++.| +++.+++++++|+.+|++++++++.+.|.
T Consensus 92 ~sT~~p~~~~~~~~~~~~~G~~~vda-PVsGg~~~a~~g~l~~~~gG---~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~ 167 (292)
T PRK15059 92 MSSISPIETKRFARQVNELGGDYLDA-PVSGGEIGAREGTLSIMVGG---DEAVFERVKPLFELLGKNITLVGGNGDGQT 167 (292)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEe-cCCCCHHHHhcCcEEEEEcC---CHHHHHHHHHHHHHHcCCcEEeCCccHHHH
Confidence 56777663 334332 34456653 44321 23445555555 89999999999999999999997555553
Q ss_pred --HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 242 --ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 242 --v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
++|+++. ..+.|++.++++.|+|++++.+++..+.|.+|
T Consensus 168 ~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~ 212 (292)
T PRK15059 168 CKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSR 212 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCH
Confidence 5666654 36899999999999999999999987777654
No 33
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.77 E-value=1.5e-17 Score=150.05 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=124.1
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||+++|..|+++|++|++||++++.++++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~---------------------------------------- 41 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE---------------------------------------- 41 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----------------------------------------
Confidence 79999 999999999999999999999999988765532
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
.|..+ ..+++.+ ++++||+||+|+|++.. .++++++.+.++++++|++ ++
T Consensus 42 --------------~g~~~------------~~~~~~~-~~~~aDlVilavp~~~~--~~~~~~l~~~l~~~~ii~d-~~ 91 (279)
T PRK07417 42 --------------RGLVD------------EASTDLS-LLKDCDLVILALPIGLL--LPPSEQLIPALPPEAIVTD-VG 91 (279)
T ss_pred --------------CCCcc------------cccCCHh-HhcCCCEEEEcCCHHHH--HHHHHHHHHhCCCCcEEEe-Cc
Confidence 12111 1234444 67999999999998764 4678899888899998865 44
Q ss_pred CCCHHHHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc
Q psy13746 173 SFLPSVLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG 240 (294)
Q Consensus 173 t~~~~~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g 240 (294)
++....+......+.+|+++|||.+.. .++.+.+++++.++++.++.++++++.+|+++++++++.++
T Consensus 92 Svk~~~~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~~v~~~~~~hD 171 (279)
T PRK07417 92 SVKAPIVEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSKIYTADPEEHD 171 (279)
T ss_pred chHHHHHHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCEEEEcCHHHHH
Confidence 555555555444455799999998543 35677789999999999999999999999999999777777
Q ss_pred cHHH
Q psy13746 241 FALN 244 (294)
Q Consensus 241 ~v~n 244 (294)
.+..
T Consensus 172 ~~~a 175 (279)
T PRK07417 172 RAVA 175 (279)
T ss_pred HHHH
Confidence 6443
No 34
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.75 E-value=1.1e-16 Score=153.75 Aligned_cols=202 Identities=12% Similarity=0.167 Sum_probs=140.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+..+|+|| |.||++||.+|+++||+|++|||++++.+...+...
T Consensus 5 ~~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~---------------------------------- 50 (493)
T PLN02350 5 ALSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAK---------------------------------- 50 (493)
T ss_pred CCCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh----------------------------------
Confidence 45689999 999999999999999999999999999876543100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
..|. ..+....+++++++. +|+||.|+|.+..+. +++..+.+.+.++.|
T Consensus 51 ----------------~~Ga-----------~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~-~Vi~gl~~~l~~G~i 102 (493)
T PLN02350 51 ----------------KEGN-----------LPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD-QTIKALSEYMEPGDC 102 (493)
T ss_pred ----------------hcCC-----------cccccCCCHHHHHhcCCCCCEEEEECCCcHHHH-HHHHHHHhhcCCCCE
Confidence 0021 012345677776655 999999999987664 555788888888988
Q ss_pred EEecCCCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCe------eEE
Q psy13746 167 LSSSTSSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMK------PVT 233 (294)
Q Consensus 167 i~s~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~------~v~ 233 (294)
|++ +|+..+.. +++.+. +..+|+++.....+ ..++ .+++| ++++++++++++|+.++.+ +++
T Consensus 103 iID-~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~--~im~G--G~~~a~~~v~pvL~~ia~k~~~~~~v~~ 177 (493)
T PLN02350 103 IID-GGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP--SLMPG--GSFEAYKNIEDILEKVAAQVDDGPCVTY 177 (493)
T ss_pred EEE-CCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC--eEEec--CCHHHHHHHHHHHHHHhhhcCCCCcEEE
Confidence 885 45554442 333332 23334443222211 2344 45665 5899999999999999965 788
Q ss_pred Eccccccc---HHHHHHH----HHHHHHHHHHHcC-CCCHHHHHHH---HHcccCCCc
Q psy13746 234 LTTEIRGF---ALNRIQF----AVLNECYHLVHDG-VLSAKDIDRV---MSEGLGLRY 280 (294)
Q Consensus 234 v~~~~~g~---v~nri~~----a~~~Ea~~l~~~~-~~~~~~id~a---~~~g~g~~~ 280 (294)
+++.+.|. ++|+.+. ..+.|++.++++. |++++++.++ +..|.+.++
T Consensus 178 vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~ 235 (493)
T PLN02350 178 IGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESF 235 (493)
T ss_pred eCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccch
Confidence 87555553 4555553 4689999999984 9999999888 445555443
No 35
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.74 E-value=7.5e-17 Score=151.07 Aligned_cols=168 Identities=18% Similarity=0.198 Sum_probs=125.6
Q ss_pred CccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.+++|+|| |.||+++|..|..+|++|++||+++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------------------------------------- 133 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------------------------------------- 133 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------------------------------------
Confidence 55789999 99999999999999999999998631
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
++.++++++||+||+|+|++. ..++++++.+ +++++||+
T Consensus 134 --------------------------------------~~~~~~~~~aDlVilavP~~~--~~~~~~~l~~-l~~~~iv~ 172 (374)
T PRK11199 134 --------------------------------------DRAEDILADAGMVIVSVPIHL--TEEVIARLPP-LPEDCILV 172 (374)
T ss_pred --------------------------------------hhHHHHHhcCCEEEEeCcHHH--HHHHHHHHhC-CCCCcEEE
Confidence 012345688999999999986 4688899988 89999999
Q ss_pred ecCCCCC--HHHHHhhcCCCCceeeeeecCCCCCC----CeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccH
Q psy13746 169 SSTSSFL--PSVLSEHSTHRSQFIVAHPVNPPYFI----PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA 242 (294)
Q Consensus 169 s~tSt~~--~~~ia~~l~~~~~~ig~h~~~p~~~~----~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v 242 (294)
+++|+.. +..+.+.. +.+|+|.|||+++... ..+.+++ .++++.+++++++++.+|+++++++++.++.+
T Consensus 173 Dv~SvK~~~~~~~~~~~--~~~fvg~HPm~G~~~~~~~~~~vv~~~--~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~~ 248 (374)
T PRK11199 173 DLTSVKNAPLQAMLAAH--SGPVLGLHPMFGPDVGSLAKQVVVVCD--GRQPEAYQWLLEQIQVWGARLHRISAVEHDQN 248 (374)
T ss_pred ECCCccHHHHHHHHHhC--CCCEEeeCCCCCCCCcccCCCEEEEcC--CCCchHHHHHHHHHHHCCCEEEECCHHHHHHH
Confidence 9888633 34554443 3469999999987543 3344433 47888999999999999999999987888865
Q ss_pred HHHHHH----HHHHHHHHHHHcCCCCHHHH
Q psy13746 243 LNRIQF----AVLNECYHLVHDGVLSAKDI 268 (294)
Q Consensus 243 ~nri~~----a~~~Ea~~l~~~~~~~~~~i 268 (294)
...+.. ..+.++..+.+ .+.+.+++
T Consensus 249 ~a~vshLpH~~a~al~~~l~~-~~~~~~~~ 277 (374)
T PRK11199 249 MAFIQALRHFATFAYGLHLAK-ENVDLEQL 277 (374)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCHHHH
Confidence 544432 23555666655 34465554
No 36
>PLN02858 fructose-bisphosphate aldolase
Probab=99.73 E-value=2.4e-16 Score=167.28 Aligned_cols=191 Identities=16% Similarity=0.137 Sum_probs=146.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.+||.+|+++||+|++|||++++.++..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~--------------------------------------- 45 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCE--------------------------------------- 45 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH---------------------------------------
Confidence 689999 999999999999999999999999988775432
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH--HHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY--RAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~s 169 (294)
.| ....+++.+++++||+||.|+|++..++..++ ..+.+.+.++.++++
T Consensus 46 ---------------~G--------------a~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~iivd 96 (1378)
T PLN02858 46 ---------------LG--------------GHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAVILI 96 (1378)
T ss_pred ---------------cC--------------CeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCEEEE
Confidence 12 23467888889999999999999987766555 457777888888874
Q ss_pred cCCCCCHHHH---HhhcCCCCceee--eeecCCC--------CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEE-c
Q psy13746 170 STSSFLPSVL---SEHSTHRSQFIV--AHPVNPP--------YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL-T 235 (294)
Q Consensus 170 ~tSt~~~~~i---a~~l~~~~~~ig--~h~~~p~--------~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v-~ 235 (294)
+||+.++.. ++.+.. .| .+|++.| ..+.+..+++| +++.+++++++|+.+|++++++ +
T Consensus 97 -~STi~p~~~~~la~~l~~----~g~~~~~lDaPVsGg~~~A~~G~L~imvGG---~~~~~~~~~p~l~~~g~~i~~~~G 168 (1378)
T PLN02858 97 -RSTILPLQLQKLEKKLTE----RKEQIFLVDAYVSKGMSDLLNGKLMIIASG---RSDAITRAQPFLSAMCQKLYTFEG 168 (1378)
T ss_pred -CCCCCHHHHHHHHHHHHh----cCCceEEEEccCcCCHHHHhcCCeEEEEcC---CHHHHHHHHHHHHHhcCceEEecC
Confidence 677777643 333321 13 4454422 23456666666 8899999999999999998875 4
Q ss_pred cccccc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 236 TEIRGF---ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 236 ~~~~g~---v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
+.+.|. ++|+++. ..+.||+.++++.|++++.+.+++..++|.+|
T Consensus 169 ~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~ 220 (1378)
T PLN02858 169 EIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSW 220 (1378)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCH
Confidence 344443 5677664 46899999999999999999999999888765
No 37
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.73 E-value=1.6e-16 Score=148.18 Aligned_cols=176 Identities=17% Similarity=0.161 Sum_probs=131.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||++||..|.++|++|.+|+++++..+.....
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~-------------------------------------- 42 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARAL-------------------------------------- 42 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHh--------------------------------------
Confidence 479999 9999999999999999999999998764432210
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhc-ccCCCeEEEec
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDI-FMSSNTILSSS 170 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ 170 (294)
..|..+ ..++++.+++++||+||+|+|++. ...+++++.+ .++++++|++.
T Consensus 43 --------------~~~~~~------------~~~~~~~~~~~~aDlVilavP~~~--~~~vl~~l~~~~l~~~~ivtDv 94 (359)
T PRK06545 43 --------------GFGVID------------ELAADLQRAAAEADLIVLAVPVDA--TAALLAELADLELKPGVIVTDV 94 (359)
T ss_pred --------------cCCCCc------------ccccCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhcCCCCCcEEEeC
Confidence 011111 134567778899999999999864 5688899987 47889998876
Q ss_pred CCCCC--HHHHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc
Q psy13746 171 TSSFL--PSVLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT 236 (294)
Q Consensus 171 tSt~~--~~~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~ 236 (294)
+|+.. .+.+...+.+..+|++.|||.... .+..+.+++++.++++.++.++++++.+|++++++.+
T Consensus 95 ~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~lGa~~v~~~~ 174 (359)
T PRK06545 95 GSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSGTGAKFVVLDA 174 (359)
T ss_pred ccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCH
Confidence 66532 234444445667899999997542 3456778898889999999999999999999999977
Q ss_pred cccccHHHHHHH--HHHHHHH
Q psy13746 237 EIRGFALNRIQF--AVLNECY 255 (294)
Q Consensus 237 ~~~g~v~nri~~--a~~~Ea~ 255 (294)
+.++.++..+.. .++.+++
T Consensus 175 ~~HD~~~A~vshlPh~ia~al 195 (359)
T PRK06545 175 EEHDRAVALVSHLPHILASSL 195 (359)
T ss_pred HHHhHHHhHhccHHHHHHHHH
Confidence 788887776653 3455554
No 38
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.72 E-value=1.1e-15 Score=139.24 Aligned_cols=191 Identities=17% Similarity=0.150 Sum_probs=133.0
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||.+||..+++.|++|++||+++++.+++.+
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~---------------------------------------- 41 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK---------------------------------------- 41 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----------------------------------------
Confidence 79999 999999999999999999999999987665421
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| ...+.++++.+++ +|+||.|+|.+..+ +.++.++.+.++++.+|++
T Consensus 42 --------------~g--------------~~~~~s~~~~~~~~~~advVi~~vp~~~~~-~~v~~~i~~~l~~g~ivid 92 (299)
T PRK12490 42 --------------LG--------------ITARHSLEELVSKLEAPRTIWVMVPAGEVT-ESVIKDLYPLLSPGDIVVD 92 (299)
T ss_pred --------------CC--------------CeecCCHHHHHHhCCCCCEEEEEecCchHH-HHHHHHHhccCCCCCEEEE
Confidence 12 2345667666555 69999999988544 4566788888888888875
Q ss_pred cCCCCCHH---HHHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCC---eeEEEccccc
Q psy13746 170 STSSFLPS---VLSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGM---KPVTLTTEIR 239 (294)
Q Consensus 170 ~tSt~~~~---~ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~---~~v~v~~~~~ 239 (294)
+|+..+. ++.+.+. +..+|+....+..+ ..+ ...++.| +++.+++++++|+.+|. +++++++.+.
T Consensus 93 -~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g-~~~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~ 167 (299)
T PRK12490 93 -GGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNG-YCLMVGG---DKEIYDRLEPVFKALAPEGPGYVHAGPVGS 167 (299)
T ss_pred -CCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcC-CeEEecC---CHHHHHHHHHHHHHhcCcCCcEEEECCcCH
Confidence 4444433 3334332 22333332222211 123 3434444 88999999999999997 6788864333
Q ss_pred cc---HHHHHHH----HHHHHHHHHHHcCC--CCHHHHHHHHHcc-cCCC
Q psy13746 240 GF---ALNRIQF----AVLNECYHLVHDGV--LSAKDIDRVMSEG-LGLR 279 (294)
Q Consensus 240 g~---v~nri~~----a~~~Ea~~l~~~~~--~~~~~id~a~~~g-~g~~ 279 (294)
|. ++|+++. ..+.|++.++++.+ +|++++.++++.+ .+.+
T Consensus 168 a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s 217 (299)
T PRK12490 168 GHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRS 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHH
Confidence 32 5566553 46899999999998 9999999999853 3443
No 39
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.71 E-value=1e-16 Score=133.35 Aligned_cols=150 Identities=24% Similarity=0.293 Sum_probs=107.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+++|+|| |.||++||.+|+++||+|++|||++++.++..+
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~-------------------------------------- 42 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAE-------------------------------------- 42 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH--------------------------------------
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHH--------------------------------------
Confidence 4799999 999999999999999999999999988776543
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHH--HhcccCCCeEEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRA--IDIFMSSNTILS 168 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~--l~~~~~~~~ii~ 168 (294)
.| .+..+++.+++++||+||.|+|.+.+++ +++.+ +.+.+.++++|+
T Consensus 43 ----------------~g--------------~~~~~s~~e~~~~~dvvi~~v~~~~~v~-~v~~~~~i~~~l~~g~iii 91 (163)
T PF03446_consen 43 ----------------AG--------------AEVADSPAEAAEQADVVILCVPDDDAVE-AVLFGENILAGLRPGKIII 91 (163)
T ss_dssp ----------------TT--------------EEEESSHHHHHHHBSEEEE-SSSHHHHH-HHHHCTTHGGGS-TTEEEE
T ss_pred ----------------hh--------------hhhhhhhhhHhhcccceEeecccchhhh-hhhhhhHHhhccccceEEE
Confidence 12 4667899999999999999999987654 56666 888899999987
Q ss_pred ecCCCCCHHH---HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEE-Ec
Q psy13746 169 SSTSSFLPSV---LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT-LT 235 (294)
Q Consensus 169 s~tSt~~~~~---ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~-v~ 235 (294)
++||.+++. +++.+. +..+|+.......+ ..+.+..++.| +++.+++++++|+.+|.++++ ++
T Consensus 92 -d~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG---~~~~~~~~~~~l~~~~~~v~~~~G 162 (163)
T PF03446_consen 92 -DMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGG---DEEAFERVRPLLEAMGKNVYHYVG 162 (163)
T ss_dssp -E-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES----HHHHHHHHHHHHHHEEEEEEE-E
T ss_pred -ecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccC---CHHHHHHHHHHHHHHhCCceeeeC
Confidence 466677663 344432 23334433222211 23556667776 789999999999999999884 44
No 40
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.71 E-value=2.7e-16 Score=141.86 Aligned_cols=210 Identities=13% Similarity=0.101 Sum_probs=148.7
Q ss_pred CCccceEEE--ccccHHHHHHHHHCC----CeEEEEeCChH-HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEe
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAG----YKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLY 83 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G----~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (294)
|+.++|+|| |.||++||..|+++| ++|++|||+++ .++.....
T Consensus 1 ~~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~------------------------------ 50 (279)
T PRK07679 1 MSIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQK------------------------------ 50 (279)
T ss_pred CCCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHh------------------------------
Confidence 556799999 999999999999998 79999999764 33332110
Q ss_pred ecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCC
Q psy13746 84 DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSS 163 (294)
Q Consensus 84 d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~ 163 (294)
.| ++.+.+..+++.+||+||.|+|++. -.+++.++.+.+++
T Consensus 51 -----------------------~g--------------~~~~~~~~e~~~~aDvVilav~p~~--~~~vl~~l~~~~~~ 91 (279)
T PRK07679 51 -----------------------YG--------------VKGTHNKKELLTDANILFLAMKPKD--VAEALIPFKEYIHN 91 (279)
T ss_pred -----------------------cC--------------ceEeCCHHHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCC
Confidence 01 2345677777889999999999765 34667888887888
Q ss_pred CeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCC-CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc-c-
Q psy13746 164 NTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR-G- 240 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~-~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~-g- 240 (294)
+++|++..++++++.+.+.+.+..++++.||+.|... ..+..+++++..+++.++.++++|+.+|.. +++. +.. .
T Consensus 92 ~~liIs~~aGi~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~-~~v~-e~~~~~ 169 (279)
T PRK07679 92 NQLIISLLAGVSTHSIRNLLQKDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLV-SVVE-EEDMHA 169 (279)
T ss_pred CCEEEEECCCCCHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcE-EEeC-HHHhhh
Confidence 8888887789999988887765567899999776544 334456677778899999999999999984 4542 221 0
Q ss_pred cH-----HHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHc---ccCCCc--CCCChhhhhccc
Q psy13746 241 FA-----LNRIQFAVLNECYH-LVHDGVLSAKDIDRVMSE---GLGLRY--AFLGPLETIHLN 292 (294)
Q Consensus 241 ~v-----~nri~~a~~~Ea~~-l~~~~~~~~~~id~a~~~---g~g~~~--~~~Gp~~~~D~~ 292 (294)
.. ... +.+.+.|++. .+.+.|+++++..+++.. |.+... ....|-++.|.+
T Consensus 170 ~~a~~Gsgpa-~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~l~~~v 231 (279)
T PRK07679 170 VTALSGSGPA-YIYYVVEAMEKAAKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSILRKEI 231 (279)
T ss_pred HHHhhcCHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhc
Confidence 00 011 1334556664 678889999998888776 332111 135676666654
No 41
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.71 E-value=6.1e-16 Score=147.60 Aligned_cols=185 Identities=16% Similarity=0.184 Sum_probs=136.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.||+++|..|..+|++|++||++++...+....
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~------------------------------------- 43 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKE------------------------------------- 43 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHH-------------------------------------
Confidence 378999 6999999999999999999999998765332111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| +..+++..+++.++|+||.|+|.+. ...+++++.+.++++++|++.
T Consensus 44 ----------------~g--------------v~~~~~~~e~~~~aDvVIlavp~~~--~~~vl~~l~~~l~~~~iViDv 91 (437)
T PRK08655 44 ----------------LG--------------VEYANDNIDAAKDADIVIISVPINV--TEDVIKEVAPHVKEGSLLMDV 91 (437)
T ss_pred ----------------cC--------------CeeccCHHHHhccCCEEEEecCHHH--HHHHHHHHHhhCCCCCEEEEc
Confidence 11 2345677778899999999999864 357889999999999999887
Q ss_pred CCCC--CHHHHHhhcCCCCceeeeeecCCC----CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHH
Q psy13746 171 TSSF--LPSVLSEHSTHRSQFIVAHPVNPP----YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALN 244 (294)
Q Consensus 171 tSt~--~~~~ia~~l~~~~~~ig~h~~~p~----~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~n 244 (294)
+|+. ....+.+.++...+|++.|||..+ ..++.+.+++++.++++.+++++++|+.+|.++++++++.++.+.+
T Consensus 92 sSvK~~~~~~l~~~~~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~HD~~~a 171 (437)
T PRK08655 92 TSVKERPVEAMEEYAPEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPEEHDRIMS 171 (437)
T ss_pred ccccHHHHHHHHHhcCCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHH
Confidence 7743 334555555555689999998754 3466788889888899999999999999999999987777776655
Q ss_pred HHHH-H---HHHHHHHHHHcCCCCHHHH
Q psy13746 245 RIQF-A---VLNECYHLVHDGVLSAKDI 268 (294)
Q Consensus 245 ri~~-a---~~~Ea~~l~~~~~~~~~~i 268 (294)
.+.. + .+..+..+ .+.+.+.++.
T Consensus 172 ~vs~lph~~a~al~~~l-~~~g~~~~~~ 198 (437)
T PRK08655 172 VVQGLTHFAYISIASTL-KRLGVDIKES 198 (437)
T ss_pred HHHHHHHHHHHHHHHHH-HHcCCCHHHH
Confidence 5542 1 22333333 3445565554
No 42
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.71 E-value=9.4e-16 Score=137.24 Aligned_cols=190 Identities=13% Similarity=0.099 Sum_probs=135.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC----eEEEE-eCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY----KVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~----~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
+||+|| |.||.+||..|+++|+ +|++| |+++++.+.+.+
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~---------------------------------- 46 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS---------------------------------- 46 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH----------------------------------
Confidence 479999 9999999999999998 89999 999877654321
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
.| +..+++..++++++|+||.|++... ..+++.++.+.++++++
T Consensus 47 --------------------~g--------------~~~~~~~~e~~~~aDvVil~v~~~~--~~~vl~~l~~~~~~~~~ 90 (266)
T PLN02688 47 --------------------LG--------------VKTAASNTEVVKSSDVIILAVKPQV--VKDVLTELRPLLSKDKL 90 (266)
T ss_pred --------------------cC--------------CEEeCChHHHHhcCCEEEEEECcHH--HHHHHHHHHhhcCCCCE
Confidence 12 2345677777889999999997433 56788888887888888
Q ss_pred EEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccH---
Q psy13746 167 LSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA--- 242 (294)
Q Consensus 167 i~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v--- 242 (294)
|++.+++++++.+.+..... ++++.+|..|...+. ...++.+..++++.++.++++|+.+|. +++++.+....+
T Consensus 91 iIs~~~g~~~~~l~~~~~~~-~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e~~~d~~~~~ 168 (266)
T PLN02688 91 LVSVAAGITLADLQEWAGGR-RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDEKLLDAVTGL 168 (266)
T ss_pred EEEecCCCcHHHHHHHcCCC-CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCHHHcchhHhh
Confidence 88888889988888766543 677778877765443 334666777899999999999999999 878732111111
Q ss_pred ---HHHHHHHHHHHHH-HHHHcCCCCHHHHHHHHHccc
Q psy13746 243 ---LNRIQFAVLNECY-HLVHDGVLSAKDIDRVMSEGL 276 (294)
Q Consensus 243 ---~nri~~a~~~Ea~-~l~~~~~~~~~~id~a~~~g~ 276 (294)
...+ .+.+.|++ ..+.+.|+++++..+++..++
T Consensus 169 ~g~g~a~-~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 169 SGSGPAY-IFLAIEALADGGVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred hcCHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1111 12222322 226667889999888776543
No 43
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.70 E-value=1.3e-15 Score=136.54 Aligned_cols=170 Identities=16% Similarity=0.211 Sum_probs=127.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.++|+|+ |.||+++|..+..+|+.|.+++++...-.....
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a-------------------------------------- 44 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA-------------------------------------- 44 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH--------------------------------------
Confidence 4688899 999999999999999988777666544222111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccCh-hhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVL-RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~-~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
...|.++ +.+.+. .+++.++|+||.|+|-.. ..++++++.+.++++++|++
T Consensus 45 --------------~~lgv~d------------~~~~~~~~~~~~~aD~VivavPi~~--~~~~l~~l~~~l~~g~iv~D 96 (279)
T COG0287 45 --------------LELGVID------------ELTVAGLAEAAAEADLVIVAVPIEA--TEEVLKELAPHLKKGAIVTD 96 (279)
T ss_pred --------------hhcCccc------------ccccchhhhhcccCCEEEEeccHHH--HHHHHHHhcccCCCCCEEEe
Confidence 1123322 122332 456788999999999766 45899999999999999999
Q ss_pred cCCCCC--HHHHHhhcCCCCceeeeeecCCC--C----CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc
Q psy13746 170 STSSFL--PSVLSEHSTHRSQFIVAHPVNPP--Y----FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 241 (294)
Q Consensus 170 ~tSt~~--~~~ia~~l~~~~~~ig~h~~~p~--~----~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~ 241 (294)
.+|+.. ++.+.+..+...+|+|+|||.++ . .+..+.+++++.++.+.++.++.+|+.+|.+++++.++.+..
T Consensus 97 v~S~K~~v~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~ 176 (279)
T COG0287 97 VGSVKSSVVEAMEKYLPGDVRFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDR 176 (279)
T ss_pred cccccHHHHHHHHHhccCCCeeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEEEcChHHHhH
Confidence 998753 33444443221279999999977 2 356788999988899999999999999999999998888888
Q ss_pred HHHHHHH
Q psy13746 242 ALNRIQF 248 (294)
Q Consensus 242 v~nri~~ 248 (294)
+...+..
T Consensus 177 ~~a~vsh 183 (279)
T COG0287 177 VMAAVSH 183 (279)
T ss_pred HHHHHHH
Confidence 7766653
No 44
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.70 E-value=2.7e-15 Score=136.76 Aligned_cols=185 Identities=16% Similarity=0.124 Sum_probs=131.7
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||++||..|+++|++|++||+++++.+++.+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~---------------------------------------- 41 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE---------------------------------------- 41 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------------------------------------
Confidence 79999 999999999999999999999999988765422
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| ....+++.+.++. +|+||.|+|.+..+ .+++..+.+.++++.++++
T Consensus 42 --------------~g--------------~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~-~~v~~~l~~~l~~g~ivid 92 (301)
T PRK09599 42 --------------EG--------------ATGADSLEELVAKLPAPRVVWLMVPAGEIT-DATIDELAPLLSPGDIVID 92 (301)
T ss_pred --------------CC--------------CeecCCHHHHHhhcCCCCEEEEEecCCcHH-HHHHHHHHhhCCCCCEEEe
Confidence 12 2344566665554 69999999987544 4566778888888888875
Q ss_pred cCCCCCHH---HHHhhcCCCCceeeeeecCCC-CC------CCeEEEecCCCCCHHHHHHHHHHHHHcCC----eeEEEc
Q psy13746 170 STSSFLPS---VLSEHSTHRSQFIVAHPVNPP-YF------IPLVEIVPAAWTSERVITRTREIMTEIGM----KPVTLT 235 (294)
Q Consensus 170 ~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~-~~------~~lveiv~g~~t~~e~~~~~~~ll~~lG~----~~v~v~ 235 (294)
. |+..+. ++.+.+.. .|.+|++.| .. ..+ .++.| ++++.+++++++++.++. ++++++
T Consensus 93 ~-st~~~~~~~~~~~~~~~----~g~~~~dapvsG~~~~a~~g~-~~~~g--G~~~~~~~~~~~l~~~~~~~~~~~~~~G 164 (301)
T PRK09599 93 G-GNSYYKDDIRRAELLAE----KGIHFVDVGTSGGVWGLERGY-CLMIG--GDKEAVERLEPIFKALAPRAEDGYLHAG 164 (301)
T ss_pred C-CCCChhHHHHHHHHHHH----cCCEEEeCCCCcCHHHHhcCC-eEEec--CCHHHHHHHHHHHHHHcccccCCeEeEC
Confidence 4 444333 23333321 144444422 11 124 34444 489999999999999999 788997
Q ss_pred cccccc---HHHHHHH----HHHHHHHHHHHc--CCCCHHHHHHHHHccc
Q psy13746 236 TEIRGF---ALNRIQF----AVLNECYHLVHD--GVLSAKDIDRVMSEGL 276 (294)
Q Consensus 236 ~~~~g~---v~nri~~----a~~~Ea~~l~~~--~~~~~~~id~a~~~g~ 276 (294)
+.+.|. ++|+++. ..+.|++.++++ .++|++++.++++.|.
T Consensus 165 ~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~ 214 (301)
T PRK09599 165 PVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGS 214 (301)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCc
Confidence 544443 4555543 358899999999 9999999999999754
No 45
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.70 E-value=2.2e-15 Score=144.40 Aligned_cols=189 Identities=14% Similarity=0.209 Sum_probs=136.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.+|+|| |.||++||.+|+++||+|++|||++++.++..+...+
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~----------------------------------- 46 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKE----------------------------------- 46 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhh-----------------------------------
Confidence 479999 9999999999999999999999999998765442110
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhcc---CCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE---DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~---~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.| ..+..+++++++++ ++|+||.|+|....+ +.++.++.+.+.++.||+
T Consensus 47 ---------------~g------------~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v-~~vi~~l~~~L~~g~iII 98 (470)
T PTZ00142 47 ---------------GN------------TRVKGYHTLEELVNSLKKPRKVILLIKAGEAV-DETIDNLLPLLEKGDIII 98 (470)
T ss_pred ---------------cC------------CcceecCCHHHHHhcCCCCCEEEEEeCChHHH-HHHHHHHHhhCCCCCEEE
Confidence 01 01345677877765 589999999887654 567788999999999998
Q ss_pred ecCCCCCHHH--HHhhcCCCCceeeeeecCCC-C-------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCe------eE
Q psy13746 169 SSTSSFLPSV--LSEHSTHRSQFIVAHPVNPP-Y-------FIPLVEIVPAAWTSERVITRTREIMTEIGMK------PV 232 (294)
Q Consensus 169 s~tSt~~~~~--ia~~l~~~~~~ig~h~~~p~-~-------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~------~v 232 (294)
+.+++...+. ....+. -.|.||++.+ . .+. . +++| ++++++++++++|+.++.+ +.
T Consensus 99 D~gn~~~~dt~~r~~~l~----~~Gi~fldapVSGG~~gA~~G~-~-lm~G--G~~~a~~~~~piL~~ia~~~~~~~~~~ 170 (470)
T PTZ00142 99 DGGNEWYLNTERRIKRCE----EKGILYLGMGVSGGEEGARYGP-S-LMPG--GNKEAYDHVKDILEKCSAKVGDSPCVT 170 (470)
T ss_pred ECCCCCHHHHHHHHHHHH----HcCCeEEcCCCCCCHHHHhcCC-E-EEEe--CCHHHHHHHHHHHHHHhhhcCCCCeEE
Confidence 7665543332 222221 1255555522 2 233 3 5555 4899999999999999988 68
Q ss_pred EEccccccc---HHHHHH----HHHHHHHHHHHH-cCCCCHHHHHHHHH
Q psy13746 233 TLTTEIRGF---ALNRIQ----FAVLNECYHLVH-DGVLSAKDIDRVMS 273 (294)
Q Consensus 233 ~v~~~~~g~---v~nri~----~a~~~Ea~~l~~-~~~~~~~~id~a~~ 273 (294)
++++.+.|. ++|+.+ ...+.|++.+++ ..+++++++.+++.
T Consensus 171 ~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~ 219 (470)
T PTZ00142 171 YVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFN 219 (470)
T ss_pred EECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 887655553 445444 246899999998 68999999988874
No 46
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.68 E-value=6.5e-15 Score=134.10 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=131.1
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||.+||..++++|++|.+||+++++++++.+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~--------------------------------------- 42 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKED--------------------------------------- 42 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc---------------------------------------
Confidence 79999 9999999999999999999999999887654321
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccC---hhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV---LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~---~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
|. ....+ +.+.+.++|+||.|+|.+ . .+++++++.+.++++.+|++
T Consensus 43 ---------------g~--------------~~~~s~~~~~~~~~~~dvIi~~vp~~-~-~~~v~~~l~~~l~~g~ivid 91 (298)
T TIGR00872 43 ---------------RT--------------TGVANLRELSQRLSAPRVVWVMVPHG-I-VDAVLEELAPTLEKGDIVID 91 (298)
T ss_pred ---------------CC--------------cccCCHHHHHhhcCCCCEEEEEcCch-H-HHHHHHHHHhhCCCCCEEEE
Confidence 11 11122 333456799999999997 3 45777889888988888876
Q ss_pred cCCCCCHH--HHHhhcC-CCCceeeeeecCCCC--CCCeEEEecCCCCCHHHHHHHHHHHHHcCC---eeEEEccccccc
Q psy13746 170 STSSFLPS--VLSEHST-HRSQFIVAHPVNPPY--FIPLVEIVPAAWTSERVITRTREIMTEIGM---KPVTLTTEIRGF 241 (294)
Q Consensus 170 ~tSt~~~~--~ia~~l~-~~~~~ig~h~~~p~~--~~~lveiv~g~~t~~e~~~~~~~ll~~lG~---~~v~v~~~~~g~ 241 (294)
.+++.+.+ ++...+. +..+|+..+...++. ...+..++.| +++.++.++++|+.++. ..+++++.+.|.
T Consensus 92 ~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG---~~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~ 168 (298)
T TIGR00872 92 GGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGG---DGEAFARAEPLFADVAPEEQGYLYCGPCGSGH 168 (298)
T ss_pred CCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCC---CHHHHHHHHHHHHHhcCcCCCEEEECCccHhH
Confidence 55543222 2222332 334455544333221 1124334444 89999999999999997 467886444443
Q ss_pred ---HHHHHH-H---HHHHHHHHHHHcC--CCCHHHHHHHHHccc
Q psy13746 242 ---ALNRIQ-F---AVLNECYHLVHDG--VLSAKDIDRVMSEGL 276 (294)
Q Consensus 242 ---v~nri~-~---a~~~Ea~~l~~~~--~~~~~~id~a~~~g~ 276 (294)
++++.+ . ..+.|++.++++. ++|++++.++++.|.
T Consensus 169 ~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~ 212 (298)
T TIGR00872 169 FVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGS 212 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCc
Confidence 344443 2 4688999999996 579999999999865
No 47
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.66 E-value=6.6e-15 Score=132.52 Aligned_cols=157 Identities=22% Similarity=0.285 Sum_probs=116.2
Q ss_pred ceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+|+|| |.||+++|..|.++|+ +|++||++++.++.+.+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~-------------------------------------- 43 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALE-------------------------------------- 43 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHH--------------------------------------
Confidence 79999 9999999999999996 79999999988665432
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.|.. ....+..++ .++|+||.|+|.+. ..+++.++.+ ++++++|++.
T Consensus 44 ----------------~g~~-------------~~~~~~~~~-~~aD~Vilavp~~~--~~~~~~~l~~-l~~~~iv~d~ 90 (275)
T PRK08507 44 ----------------LGLV-------------DEIVSFEEL-KKCDVIFLAIPVDA--IIEILPKLLD-IKENTTIIDL 90 (275)
T ss_pred ----------------CCCC-------------cccCCHHHH-hcCCEEEEeCcHHH--HHHHHHHHhc-cCCCCEEEEC
Confidence 1211 112355554 46999999999875 4467788888 8889988876
Q ss_pred CCCCCHHHHHhhcC--CCCceeeeeecCC-----C-C------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc
Q psy13746 171 TSSFLPSVLSEHST--HRSQFIVAHPVNP-----P-Y------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT 236 (294)
Q Consensus 171 tSt~~~~~ia~~l~--~~~~~ig~h~~~p-----~-~------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~ 236 (294)
+|+. .. +.+.+. .+.+|++.||+.+ + . .++.+.+++++.++++.++.++++++.+|.+++++++
T Consensus 91 gs~k-~~-i~~~~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G~~~~~~~~ 168 (275)
T PRK08507 91 GSTK-AK-IIESVPKHIRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLGMRIVYMDA 168 (275)
T ss_pred ccch-HH-HHHHHHHhcCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhCCEEEEeCH
Confidence 5543 22 222221 2357999999953 1 1 3557778888878999999999999999999999977
Q ss_pred cccccHHH
Q psy13746 237 EIRGFALN 244 (294)
Q Consensus 237 ~~~g~v~n 244 (294)
+.++.+..
T Consensus 169 ~~hD~~~a 176 (275)
T PRK08507 169 KEHDLHAA 176 (275)
T ss_pred HHHHHHHH
Confidence 77776443
No 48
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.66 E-value=4.4e-15 Score=141.03 Aligned_cols=209 Identities=17% Similarity=0.160 Sum_probs=137.7
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||.++|.+|+++||+|++||+++++++...+... + +++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~---~----------------------~~e-------- 48 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKS---P----------------------IYE-------- 48 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCC---C----------------------CCC--------
Confidence 79999 999999999999999999999999999876543211 0 011
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH--------HHHHHHHHHhcccCCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ--------IKHQVYRAIDIFMSSN 164 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~--------~k~~~~~~l~~~~~~~ 164 (294)
..+++++.+.. ..+++++++++.+++++||+||.|+|.+.. ....+.+++.+.++++
T Consensus 49 ------~~l~~~~~~~~---------~~g~l~~~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g 113 (411)
T TIGR03026 49 ------PGLDELLAKAL---------AAGRLRATTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKG 113 (411)
T ss_pred ------CCHHHHHHHhh---------hcCCeEEECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCC
Confidence 01111111110 012366778888889999999999998642 3455667888888889
Q ss_pred eEEEecCCCCCHH---HHH-hhcCC--C-----CceeeeeecCCCCCCC-------eEEEecCCCCCHHHHHHHHHHHHH
Q psy13746 165 TILSSSTSSFLPS---VLS-EHSTH--R-----SQFIVAHPVNPPYFIP-------LVEIVPAAWTSERVITRTREIMTE 226 (294)
Q Consensus 165 ~ii~s~tSt~~~~---~ia-~~l~~--~-----~~~ig~h~~~p~~~~~-------lveiv~g~~t~~e~~~~~~~ll~~ 226 (294)
++|+. .||+++. ++. ..+.+ . .-.+..+|-.. ..+. .-.++.| .+++..++++++++.
T Consensus 114 ~lvi~-~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~-~~G~~~~~~~~~~~iv~G--~~~~~~~~~~~l~~~ 189 (411)
T TIGR03026 114 ATVVL-ESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFL-REGNAVHDLLNPDRIVGG--ETEEAGEAVAELYAP 189 (411)
T ss_pred CEEEE-eCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcC-CCCChhhhhcCCCEEEEe--CCHHHHHHHHHHHHH
Confidence 88874 5666544 332 22221 0 11233333211 1111 1135555 489999999999999
Q ss_pred cC-CeeEEEcccccc---cHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcc
Q psy13746 227 IG-MKPVTLTTEIRG---FALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 227 lG-~~~v~v~~~~~g---~v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g 275 (294)
++ ..+++++....+ .++++++ .+++||+..++++.|+|++++.+++..+
T Consensus 190 ~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~~~ 246 (411)
T TIGR03026 190 IIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYEVIEAAGTD 246 (411)
T ss_pred hccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 98 577777532222 2444444 4689999999999999999999998754
No 49
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.66 E-value=4.2e-15 Score=141.12 Aligned_cols=209 Identities=15% Similarity=0.122 Sum_probs=133.6
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|.+++|+|| |.||.++|.+|+++||+|++||+++++++.....+. + +++.
T Consensus 1 m~~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~---~----------------------~~e~--- 52 (415)
T PRK11064 1 MSFETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEI---H----------------------IVEP--- 52 (415)
T ss_pred CCccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCC---C----------------------cCCC---
Confidence 567899999 999999999999999999999999999886432110 0 0110
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcc--------hHHHHHHHHHHhcc
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI--------LQIKHQVYRAIDIF 160 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~--------~~~k~~~~~~l~~~ 160 (294)
.++ +.+.+.++.| ++..+++ +++||+||.|+|.+ +.....+.+++.++
T Consensus 53 ~l~-------~~l~~~~~~g-------------~l~~~~~----~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~ 108 (415)
T PRK11064 53 DLD-------MVVKTAVEGG-------------YLRATTT----PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPV 108 (415)
T ss_pred CHH-------HHHHHHhhcC-------------ceeeecc----cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHh
Confidence 111 1122222222 2444443 35899999999985 23445667889999
Q ss_pred cCCCeEEEecCCCCCHHH---HHhhcC-CCCc--e-------eeeee-cCCC--CCC-------CeEEEecCCCCCHHHH
Q psy13746 161 MSSNTILSSSTSSFLPSV---LSEHST-HRSQ--F-------IVAHP-VNPP--YFI-------PLVEIVPAAWTSERVI 217 (294)
Q Consensus 161 ~~~~~ii~s~tSt~~~~~---ia~~l~-~~~~--~-------ig~h~-~~p~--~~~-------~lveiv~g~~t~~e~~ 217 (294)
++++++|+ ..||+++.. +...+. .... + ...+. ++|. ..+ ....++.| .+++.+
T Consensus 109 l~~g~iVI-~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~~~~~~~vvgG--~~~~~~ 185 (415)
T PRK11064 109 LKKGDLVI-LESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKNDRVIGG--MTPVCS 185 (415)
T ss_pred CCCCCEEE-EeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhhhcCCCEEEEe--CCHHHH
Confidence 99999887 456655543 322221 1000 0 00011 2341 112 22246655 488999
Q ss_pred HHHHHHHHHcCCeeEEEcccccc---cHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHc
Q psy13746 218 TRTREIMTEIGMKPVTLTTEIRG---FALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 218 ~~~~~ll~~lG~~~v~v~~~~~g---~v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~ 274 (294)
++++++++.++..+++++.-..+ .++++++ .+++||+..++++.|+|+.++.+++..
T Consensus 186 ~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~ 249 (415)
T PRK11064 186 ARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLANR 249 (415)
T ss_pred HHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcc
Confidence 99999999999887777532222 2444444 358999999999999999999888753
No 50
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.65 E-value=1.1e-14 Score=139.71 Aligned_cols=197 Identities=20% Similarity=0.233 Sum_probs=134.3
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
.|+|| |.||++||.+|+++|++|++|||++++.+++.+...
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~------------------------------------- 43 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHA------------------------------------- 43 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhcc-------------------------------------
Confidence 48999 999999999999999999999999998776543100
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhh---ccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC---LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a---~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| ..+....++++. ++.+|+||.|+|....+ .+++.++.+++.++.||++
T Consensus 44 --------------~g------------~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v-~~Vi~~l~~~L~~g~iIID 96 (467)
T TIGR00873 44 --------------KG------------KKIVGAYSIEEFVQSLERPRKIMLMVKAGAPV-DAVINQLLPLLEKGDIIID 96 (467)
T ss_pred --------------CC------------CCceecCCHHHHHhhcCCCCEEEEECCCcHHH-HHHHHHHHhhCCCCCEEEE
Confidence 01 001233444443 45799999999997654 4577889899999999887
Q ss_pred cCCCCCHHH--HHhhcC-CCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCee------EEEccc
Q psy13746 170 STSSFLPSV--LSEHST-HRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKP------VTLTTE 237 (294)
Q Consensus 170 ~tSt~~~~~--ia~~l~-~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~------v~v~~~ 237 (294)
.+++.+.+. ..+.+. +..+|+++.....+ ..+. .++.| ++++++++++++|+.++.++ .++++.
T Consensus 97 ~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~--~im~G--G~~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~ 172 (467)
T TIGR00873 97 GGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP--SIMPG--GSAEAWPLVAPIFQKIAAKVDGEPCCTWIGPD 172 (467)
T ss_pred CCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC--cCCCC--CCHHHHHHHHHHHHHHhhhcCCCCceEEECCc
Confidence 665543332 222222 33344444333222 1233 45555 58999999999999999873 788765
Q ss_pred cccc---HHHHHH----HHHHHHHHHHHH-cCCCCHHHHHHHHH---cccCCC
Q psy13746 238 IRGF---ALNRIQ----FAVLNECYHLVH-DGVLSAKDIDRVMS---EGLGLR 279 (294)
Q Consensus 238 ~~g~---v~nri~----~a~~~Ea~~l~~-~~~~~~~~id~a~~---~g~g~~ 279 (294)
+.|. ++|+.+ ...+.|++.+++ +.+++++++..++. .+.+.+
T Consensus 173 GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S 225 (467)
T TIGR00873 173 GAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDS 225 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccc
Confidence 5553 455544 246899999985 68999999988883 444444
No 51
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.65 E-value=1.7e-14 Score=129.14 Aligned_cols=189 Identities=13% Similarity=0.110 Sum_probs=134.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCC---CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG---YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G---~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
+++|+|| |.||+.+|..+.++| ++|.+||++++..+++.+..
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~--------------------------------- 48 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEY--------------------------------- 48 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhc---------------------------------
Confidence 3589999 999999999999999 78999999988765443210
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| +..+.+..+.+.++|+||.|+|... -.++++++.+.+ +++|
T Consensus 49 --------------------g--------------~~~~~~~~~~~~~advVil~v~~~~--~~~v~~~l~~~~--~~~v 90 (267)
T PRK11880 49 --------------------G--------------VRAATDNQEAAQEADVVVLAVKPQV--MEEVLSELKGQL--DKLV 90 (267)
T ss_pred --------------------C--------------CeecCChHHHHhcCCEEEEEcCHHH--HHHHHHHHHhhc--CCEE
Confidence 1 2334566667889999999998754 457778877766 4566
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc-ccccccHHH-
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTLT-TEIRGFALN- 244 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~-~~~~g~v~n- 244 (294)
++.+++++.+.++..++++.+++..||..|...+. ...++++..++++..+.++.+|+.+|. ++++. .+....+..
T Consensus 91 vs~~~gi~~~~l~~~~~~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~-~~~~~~e~~~d~~~a~ 169 (267)
T PRK11880 91 VSIAAGVTLARLERLLGADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAFGK-VVWVDDEKQMDAVTAV 169 (267)
T ss_pred EEecCCCCHHHHHHhcCCCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCe-EEEECChHhcchHHHH
Confidence 67888888888888776566889999988865544 344677878899999999999999997 45553 222222111
Q ss_pred -----HHHHHHHHHHH-HHHHcCCCCHHHHHHHHHc
Q psy13746 245 -----RIQFAVLNECY-HLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 245 -----ri~~a~~~Ea~-~l~~~~~~~~~~id~a~~~ 274 (294)
..+.. +.|++ ....+.|+++++..+++..
T Consensus 170 ~~~~pa~~~~-~~~~~~~~~~~~Gl~~~~a~~~~~~ 204 (267)
T PRK11880 170 SGSGPAYVFL-FIEALADAGVKLGLPREQARKLAAQ 204 (267)
T ss_pred hcChHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12222 33444 4456577888886655443
No 52
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.65 E-value=1.6e-14 Score=131.98 Aligned_cols=167 Identities=20% Similarity=0.197 Sum_probs=123.8
Q ss_pred CccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.+++|+|| |.||.++|..|...|+ +|++||++++.++.+.+
T Consensus 5 ~~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~----------------------------------- 49 (307)
T PRK07502 5 LFDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARE----------------------------------- 49 (307)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------------------------------
Confidence 35789999 9999999999999995 89999999987665432
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.|.. .....+..+++++||+||.|+|... ...+++++.+.++++++|
T Consensus 50 -------------------~g~~------------~~~~~~~~~~~~~aDvViiavp~~~--~~~v~~~l~~~l~~~~iv 96 (307)
T PRK07502 50 -------------------LGLG------------DRVTTSAAEAVKGADLVILCVPVGA--SGAVAAEIAPHLKPGAIV 96 (307)
T ss_pred -------------------CCCC------------ceecCCHHHHhcCCCEEEECCCHHH--HHHHHHHHHhhCCCCCEE
Confidence 1211 1123456667899999999999864 457788888888899888
Q ss_pred EecCCCCCHH---HHHhhcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeE
Q psy13746 168 SSSTSSFLPS---VLSEHSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPV 232 (294)
Q Consensus 168 ~s~tSt~~~~---~ia~~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v 232 (294)
++.+| .... .+...+....+|++.||+.+.. .+..+.+++...++++.++.++++++.+|.+++
T Consensus 97 ~dvgs-~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG~~~~ 175 (307)
T PRK07502 97 TDVGS-VKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALGARVE 175 (307)
T ss_pred EeCcc-chHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 76544 3333 2333334445899999998542 134556777777889999999999999999999
Q ss_pred EEcccccccHHHHHH
Q psy13746 233 TLTTEIRGFALNRIQ 247 (294)
Q Consensus 233 ~v~~~~~g~v~nri~ 247 (294)
+++++.++.+...+.
T Consensus 176 ~~~~~~hD~~~A~~s 190 (307)
T PRK07502 176 EMDPEHHDLVLAITS 190 (307)
T ss_pred EcCHHHHhHHHHHHh
Confidence 987777776555544
No 53
>PLN02858 fructose-bisphosphate aldolase
Probab=99.65 E-value=1.1e-14 Score=154.80 Aligned_cols=194 Identities=15% Similarity=0.165 Sum_probs=143.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
.++|+|| |.||.+||.+|+.+|++|++||+++++.++..+
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~-------------------------------------- 365 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFEN-------------------------------------- 365 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------------------------------------
Confidence 4789999 999999999999999999999999988765422
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH--HHhcccCCCeEEE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR--AIDIFMSSNTILS 168 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~--~l~~~~~~~~ii~ 168 (294)
.| ....+++.+++++||+||.|+|.+..++..++. .+.+.+.++.+++
T Consensus 366 ----------------~G--------------a~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~ivV 415 (1378)
T PLN02858 366 ----------------AG--------------GLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASIV 415 (1378)
T ss_pred ----------------cC--------------CeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEEE
Confidence 12 123567778889999999999988776655543 4666677888887
Q ss_pred ecCCCCCHHH---HHhhcCCCCceeeeeecCCC--------CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcc-
Q psy13746 169 SSTSSFLPSV---LSEHSTHRSQFIVAHPVNPP--------YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTT- 236 (294)
Q Consensus 169 s~tSt~~~~~---ia~~l~~~~~~ig~h~~~p~--------~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~- 236 (294)
++||+++.. +++.+.. .-.|.+|++.| ..+.+..++.| +++.+++++++|+.+|++++++++
T Consensus 416 -d~STvsP~~~~~la~~l~~--~g~g~~~lDAPVsGg~~~A~~G~L~imvgG---~~~~~~~~~plL~~lg~~i~~~~g~ 489 (1378)
T PLN02858 416 -LSSTVSPGFVIQLERRLEN--EGRDIKLVDAPVSGGVKRAAMGTLTIMASG---TDEALKSAGSVLSALSEKLYVIKGG 489 (1378)
T ss_pred -ECCCCCHHHHHHHHHHHHh--hCCCcEEEEccCCCChhhhhcCCceEEEEC---CHHHHHHHHHHHHHHhCcEEEeCCC
Confidence 467777664 3333321 01355555532 23445556665 789999999999999998887532
Q ss_pred ccccc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHcccCCCc
Q psy13746 237 EIRGF---ALNRIQF----AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRY 280 (294)
Q Consensus 237 ~~~g~---v~nri~~----a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~ 280 (294)
.+.|. ++|+++. +.++|++.++++.|+|++.+.+++..+.|.+|
T Consensus 490 ~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~ 540 (1378)
T PLN02858 490 CGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSW 540 (1378)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCh
Confidence 23332 5676653 46899999999999999999999998888665
No 54
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.64 E-value=6.3e-15 Score=138.52 Aligned_cols=202 Identities=16% Similarity=0.139 Sum_probs=127.2
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
||+|| |+||.++|..++. ||+|++||+++++++++.+.+.. . ++
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~~kv~~l~~g~~~---~----------------------~e-------- 47 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILPSRVAMLNDRISP---I----------------------VD-------- 47 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHcCCCC---C----------------------CC--------
Confidence 79999 9999999988875 99999999999999887654320 0 00
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHH---------HHHHHHHhcccCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIK---------HQVYRAIDIFMSS 163 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k---------~~~~~~l~~~~~~ 163 (294)
..+++++.++ ..+++.+.+..+++++||+||+|+|++++.| ..+++++.+ +++
T Consensus 48 ------~~l~~~l~~~-----------~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~ 109 (388)
T PRK15057 48 ------KEIQQFLQSD-----------KIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INP 109 (388)
T ss_pred ------cCHHHHHHhC-----------CCcEEEecchhhhhcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCC
Confidence 1122222211 1235666777778899999999999875332 455577776 577
Q ss_pred CeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCC--CCe-------EEEecCCCCCHHHHHHHHHHHHH--cCCeeE
Q psy13746 164 NTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF--IPL-------VEIVPAAWTSERVITRTREIMTE--IGMKPV 232 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~--~~l-------veiv~g~~t~~e~~~~~~~ll~~--lG~~~v 232 (294)
+++|+ ..||+++....+.... ..-.+..| +|... +.. -.++.| .+++..+++.+++.. ++..+.
T Consensus 110 g~lVV-~~STv~pgtt~~l~~~-~~~~~v~~-~PE~l~~G~a~~d~~~p~rvv~G--~~~~~~~~~~~~l~~~~~~~~~~ 184 (388)
T PRK15057 110 YAVMV-IKSTVPVGFTAAMHKK-YRTENIIF-SPEFLREGKALYDNLHPSRIVIG--ERSERAERFAALLQEGAIKQNIP 184 (388)
T ss_pred CCEEE-EeeecCCchHHHHHHH-hhcCcEEE-CcccccCCcccccccCCCEEEEE--cCcHHHHHHHHHHHhhhhcCCCc
Confidence 88776 4677766643332211 00112222 44321 222 124444 245667788888854 565443
Q ss_pred -EEcccccc----cHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 233 -TLTTEIRG----FALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 233 -~v~~~~~g----~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
+++.-..+ ++.|.++ .+++||+..++++.|+|+.++.+++.
T Consensus 185 ~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~ 233 (388)
T PRK15057 185 TLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVC 233 (388)
T ss_pred eeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 45322222 3444443 36899999999999999999999985
No 55
>PLN02256 arogenate dehydrogenase
Probab=99.62 E-value=3.1e-14 Score=129.65 Aligned_cols=167 Identities=18% Similarity=0.105 Sum_probs=121.8
Q ss_pred CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 10 QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 10 ~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
++..++|+|| |.||+++|..+.+.|++|++||+++.. +.+.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~----------------------------------- 76 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAE----------------------------------- 76 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHH-----------------------------------
Confidence 4456789999 999999999999999999999999632 11110
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhc-cCCcEEEEcCCcchHHHHHHHHHH-hcccCCCe
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL-EDAIFIQESVPEILQIKHQVYRAI-DIFMSSNT 165 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~-~~aDlVieavpe~~~~k~~~~~~l-~~~~~~~~ 165 (294)
.| +...++.++++ .++|+||.|+|... ..+++.++ ...+++++
T Consensus 77 -------------------~g--------------v~~~~~~~e~~~~~aDvVilavp~~~--~~~vl~~l~~~~l~~~~ 121 (304)
T PLN02256 77 -------------------LG--------------VSFFRDPDDFCEEHPDVVLLCTSILS--TEAVLRSLPLQRLKRST 121 (304)
T ss_pred -------------------cC--------------CeeeCCHHHHhhCCCCEEEEecCHHH--HHHHHHhhhhhccCCCC
Confidence 12 12345666555 47999999999753 45777887 56688999
Q ss_pred EEEecCCC--CCHHHHHhhcCCCCceeeeeecCCCCCC------CeEEEecC----CCCCHHHHHHHHHHHHHcCCeeEE
Q psy13746 166 ILSSSTSS--FLPSVLSEHSTHRSQFIVAHPVNPPYFI------PLVEIVPA----AWTSERVITRTREIMTEIGMKPVT 233 (294)
Q Consensus 166 ii~s~tSt--~~~~~ia~~l~~~~~~ig~h~~~p~~~~------~lveiv~g----~~t~~e~~~~~~~ll~~lG~~~v~ 233 (294)
+|++.+|+ ...+.+.+.++...+|+++|||.++..+ ..+.+.+. +.++++.++.++++++.+|.+++.
T Consensus 122 iviDv~SvK~~~~~~~~~~l~~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v~~ 201 (304)
T PLN02256 122 LFVDVLSVKEFPKNLLLQVLPEEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRMVE 201 (304)
T ss_pred EEEecCCchHHHHHHHHHhCCCCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCCEEEE
Confidence 99988884 3455666666555579999999987542 22222221 457889999999999999999999
Q ss_pred EcccccccHHHHHH
Q psy13746 234 LTTEIRGFALNRIQ 247 (294)
Q Consensus 234 v~~~~~g~v~nri~ 247 (294)
+.++.+..++..+.
T Consensus 202 ~~~eeHD~~vA~iS 215 (304)
T PLN02256 202 MSCEEHDRYAAGSQ 215 (304)
T ss_pred eCHHHHhHHHHhhh
Confidence 98788776554443
No 56
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.62 E-value=6e-14 Score=129.62 Aligned_cols=184 Identities=14% Similarity=0.130 Sum_probs=129.3
Q ss_pred cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHH
Q psy13746 21 LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHT 100 (294)
Q Consensus 21 ~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 100 (294)
+=|.+||.+|+++||+|++||++++.++... .
T Consensus 30 ~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~--~---------------------------------------------- 61 (342)
T PRK12557 30 YGGSRMAIEFAEAGHDVVLAEPNRSILSEEL--W---------------------------------------------- 61 (342)
T ss_pred cCHHHHHHHHHhCCCeEEEEECCHHHhhHHH--H----------------------------------------------
Confidence 3489999999999999999999998654311 0
Q ss_pred HHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHH-
Q psy13746 101 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVL- 179 (294)
Q Consensus 101 l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~i- 179 (294)
+.+...| ++++++..+++++||+||.|+|... ..+.++.++.+.++++++|++ +|+.++..+
T Consensus 62 -~~l~~~G--------------i~~asd~~eaa~~ADvVIlaVP~~~-~v~~Vl~~L~~~L~~g~IVId-~ST~~~~~~s 124 (342)
T PRK12557 62 -KKVEDAG--------------VKVVSDDAEAAKHGEIHILFTPFGK-KTVEIAKNILPHLPENAVICN-TCTVSPVVLY 124 (342)
T ss_pred -HHHHHCC--------------CEEeCCHHHHHhCCCEEEEECCCcH-HHHHHHHHHHhhCCCCCEEEE-ecCCCHHHHH
Confidence 0111122 3556677778899999999999865 345777889999999998874 566665543
Q ss_pred ---HhhcCCCCceeeeeecCCCCC----CCeEEEecCC------CCCHHHHHHHHHHHHHcCCeeEEEccccccc---HH
Q psy13746 180 ---SEHSTHRSQFIVAHPVNPPYF----IPLVEIVPAA------WTSERVITRTREIMTEIGMKPVTLTTEIRGF---AL 243 (294)
Q Consensus 180 ---a~~l~~~~~~ig~h~~~p~~~----~~lveiv~g~------~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~---v~ 243 (294)
++.+..+.+.+|.||++|... ...++++.+. ..+++.+++++++|+.+|+++++++ ...+. ..
T Consensus 125 ~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~-~g~~~~vk~~ 203 (342)
T PRK12557 125 YSLEGELRTKRKDVGISSMHPAAVPGTPQHGHYVIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVP-ADVVSAVADM 203 (342)
T ss_pred HHHHHHhcccccccCeeecCCccccccccchheEEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeC-HHHHHHHHHH
Confidence 344443445667777765421 2234444432 2488999999999999999998885 33333 35
Q ss_pred HHHHH----HHHHHHHHHHHcCCCCHHHHHH
Q psy13746 244 NRIQF----AVLNECYHLVHDGVLSAKDIDR 270 (294)
Q Consensus 244 nri~~----a~~~Ea~~l~~~~~~~~~~id~ 270 (294)
|+++. +.+.|++.++++.+.++.++.+
T Consensus 204 ~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~ 234 (342)
T PRK12557 204 GSLVTAVALSGVLDYYSVGTKIIKAPKEMIE 234 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 55554 4688999999999988888654
No 57
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.59 E-value=4e-14 Score=126.32 Aligned_cols=152 Identities=20% Similarity=0.236 Sum_probs=110.1
Q ss_pred HHHHHHHCC--CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHHHHH
Q psy13746 26 WAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTLQD 103 (294)
Q Consensus 26 iA~~~~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~l~~ 103 (294)
||+.|.++| ++|++||++++.++.+.+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~--------------------------------------------------- 29 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALE--------------------------------------------------- 29 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHH---------------------------------------------------
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHH---------------------------------------------------
Confidence 678899999 799999999998776543
Q ss_pred HHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCC--HHHHHh
Q psy13746 104 YHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSE 181 (294)
Q Consensus 104 ~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~--~~~ia~ 181 (294)
.|..+ ...++ .++++++|+||.|+|... ..++++++.++++++++|++.+|+.. ...+.+
T Consensus 30 ---~g~~~------------~~~~~-~~~~~~~DlvvlavP~~~--~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~ 91 (258)
T PF02153_consen 30 ---LGIID------------EASTD-IEAVEDADLVVLAVPVSA--IEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMER 91 (258)
T ss_dssp ---TTSSS------------EEESH-HHHGGCCSEEEE-S-HHH--HHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHH
T ss_pred ---CCCee------------eccCC-HhHhcCCCEEEEcCCHHH--HHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHH
Confidence 24332 12333 457999999999999765 56899999999999999998888642 334555
Q ss_pred hcCCCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHH
Q psy13746 182 HSTHRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 246 (294)
Q Consensus 182 ~l~~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri 246 (294)
.++...+|+|.|||.++. .++.+.+++++.++++.++.++.|++.+|.+++.+.++.+..+...+
T Consensus 92 ~~~~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~eeHD~~~A~v 168 (258)
T PF02153_consen 92 LLPEGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVEMDAEEHDRIMAYV 168 (258)
T ss_dssp HHTSSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHH
T ss_pred hcCcccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEEcCHHHHHHHHHHH
Confidence 555567999999999762 36788899998889999999999999999999999777777655444
No 58
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.59 E-value=1.3e-13 Score=123.78 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=121.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
++|+|| |.||.+||..|.++|+ +|++||+++++++.+.+.
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~---------------------------------- 48 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK---------------------------------- 48 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh----------------------------------
Confidence 379999 9999999999999885 699999999886654321
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.| +..+++..+.+.+||+||.|+|++. -.++++++.+.++++++|
T Consensus 49 -------------------~g--------------~~~~~~~~e~~~~aDiIiLavkP~~--~~~vl~~l~~~~~~~~lv 93 (272)
T PRK12491 49 -------------------YG--------------ITITTNNNEVANSADILILSIKPDL--YSSVINQIKDQIKNDVIV 93 (272)
T ss_pred -------------------cC--------------cEEeCCcHHHHhhCCEEEEEeChHH--HHHHHHHHHHhhcCCcEE
Confidence 01 2334566667889999999999633 567888998888888999
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEE-EecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE-IVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
+|...+++++.+++.++.+.+++...|..|...+..+. +..++..+++..+.++.+|+.+|.. +++
T Consensus 94 ISi~AGi~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~~ 160 (272)
T PRK12491 94 VTIAAGKSIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQT-EVV 160 (272)
T ss_pred EEeCCCCcHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCE-EEE
Confidence 99999999999999886556788999988876665444 5577778899999999999999986 565
No 59
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.58 E-value=1.6e-13 Score=131.12 Aligned_cols=187 Identities=20% Similarity=0.230 Sum_probs=131.4
Q ss_pred ccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTL 101 (294)
Q Consensus 22 mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~l 101 (294)
||+.||.+|+++||+|.+|||++++.++..+.
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~------------------------------------------------ 32 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAE------------------------------------------------ 32 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHh------------------------------------------------
Confidence 89999999999999999999999988765431
Q ss_pred HHHHhccccCCCCChhhhccCeeeccChhhhccC---CcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHH-
Q psy13746 102 QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLED---AIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPS- 177 (294)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~---aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~- 177 (294)
.|. + ..+....+++++++. +|+||.|+|....+ .+++.++.+.+.++.||++.+.+.+.+
T Consensus 33 -----~g~--~--------~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v-~~Vi~~l~~~l~~GdiiID~gn~~~~~t 96 (459)
T PRK09287 33 -----EGK--G--------KKIVPAYTLEEFVASLEKPRKILLMVKAGAPV-DAVIEQLLPLLEKGDIIIDGGNSNYKDT 96 (459)
T ss_pred -----hCC--C--------CCeEeeCCHHHHHhhCCCCCEEEEECCCchHH-HHHHHHHHhcCCCCCEEEECCCCCHHHH
Confidence 010 0 114556788877664 89999999998765 456688889999999888654433322
Q ss_pred -HHHhhcCCCCceeeeeecCC-CC-------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCee-------EEEccccccc
Q psy13746 178 -VLSEHSTHRSQFIVAHPVNP-PY-------FIPLVEIVPAAWTSERVITRTREIMTEIGMKP-------VTLTTEIRGF 241 (294)
Q Consensus 178 -~ia~~l~~~~~~ig~h~~~p-~~-------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~-------v~v~~~~~g~ 241 (294)
+.++.+. -.|.||+.. .. .+. .+++| ++++++++++++|+.++.++ .++++.+.|.
T Consensus 97 ~~~~~~l~----~~Gi~fvdapVSGG~~gA~~G~--siM~G--G~~~a~~~~~piL~~ia~~~~~g~~c~~~vG~~GaGh 168 (459)
T PRK09287 97 IRREKELA----EKGIHFIGMGVSGGEEGALHGP--SIMPG--GQKEAYELVAPILEKIAAKVEDGEPCVTYIGPDGAGH 168 (459)
T ss_pred HHHHHHHH----hcCCeEEecCCCCCHHHHhcCC--EEEEe--CCHHHHHHHHHHHHHHhhhhcCCCCceeeeCCCCHHH
Confidence 2223332 124555542 22 233 45555 48999999999999999887 8887655553
Q ss_pred ---HHHHHH----HHHHHHHHHHHHc-CCCCHHHHHHHHH---cccCCCc
Q psy13746 242 ---ALNRIQ----FAVLNECYHLVHD-GVLSAKDIDRVMS---EGLGLRY 280 (294)
Q Consensus 242 ---v~nri~----~a~~~Ea~~l~~~-~~~~~~~id~a~~---~g~g~~~ 280 (294)
++|+.+ ...+.|++.++++ .+++++++.+++. .|.+.+|
T Consensus 169 ~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~ 218 (459)
T PRK09287 169 YVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSY 218 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCh
Confidence 455554 2468999999994 7999999988884 5555443
No 60
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.58 E-value=9.5e-15 Score=141.46 Aligned_cols=90 Identities=24% Similarity=0.290 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCC
Q psy13746 200 FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLR 279 (294)
Q Consensus 200 ~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~ 279 (294)
..+.+||+++..|++++++.+.+++..+|+.|+.+ +|.|||+.||++.+++|||++++++|.++++|||.+++.|+|||
T Consensus 376 ~~~~vEv~~~~~Ts~e~~~~a~~~~~~~Gk~pi~v-~D~pGfi~nRil~~~~nEA~~ll~eGvas~~dID~a~~~g~G~P 454 (503)
T TIGR02279 376 TGKRIAIAAAAVNPDSATRKAIYYLQQAGKKVLQI-ADYPGLLILRTVAMLANEAADAVLQGVASAQDIDTAMRLGVNYP 454 (503)
T ss_pred ccCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe-CCcccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhCCCCC
Confidence 44789999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred cCCCChhhhhcccC
Q psy13746 280 YAFLGPLETIHLNS 293 (294)
Q Consensus 280 ~~~~Gp~~~~D~~~ 293 (294)
+|||+|+|.+|
T Consensus 455 ---~GP~~~~D~~G 465 (503)
T TIGR02279 455 ---YGPLAWAAQLG 465 (503)
T ss_pred ---cCHHHHHHHhC
Confidence 89999999988
No 61
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.58 E-value=7.6e-14 Score=129.80 Aligned_cols=149 Identities=13% Similarity=0.071 Sum_probs=114.8
Q ss_pred cceEEE---ccccHHHHHHHHH-CCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII---GLIGQAWAMIFAS-AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~-~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++|+|| |.||+++|..|.+ .|++|+++|++.+.
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~------------------------------------------- 41 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG------------------------------------------- 41 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-------------------------------------------
Confidence 689999 8999999999997 48999999985210
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcc---cCCCeE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF---MSSNTI 166 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~---~~~~~i 166 (294)
..++.+.+++||+||.|+|... ..++++++.++ ++++++
T Consensus 42 ------------------------------------~~~~~~~v~~aDlVilavPv~~--~~~~l~~l~~~~~~l~~~~i 83 (370)
T PRK08818 42 ------------------------------------SLDPATLLQRADVLIFSAPIRH--TAALIEEYVALAGGRAAGQL 83 (370)
T ss_pred ------------------------------------cCCHHHHhcCCCEEEEeCCHHH--HHHHHHHHhhhhcCCCCCeE
Confidence 1345567899999999999876 45788888775 789999
Q ss_pred EEecCCCCCHHHHHhhcCCCCceeeeeecCCCCC-----CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccccc
Q psy13746 167 LSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-----IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGF 241 (294)
Q Consensus 167 i~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~-----~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~ 241 (294)
|++.+|+.. .-+........+|+|+|||.++.. ++.+.++++ ..++.+++++.+++.+|.+++.+.++.|..
T Consensus 84 VtDVgSvK~-~i~~~~~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~--~~~~~~~~v~~l~~~~Ga~v~~~~aeeHD~ 160 (370)
T PRK08818 84 WLDVTSIKQ-APVAAMLASQAEVVGLHPMTAPPKSPTLKGRVMVVCEA--RLQHWSPWVQSLCSALQAECVYATPEHHDR 160 (370)
T ss_pred EEECCCCcH-HHHHHHHhcCCCEEeeCCCCCCCCCcccCCCeEEEeCC--CchhHHHHHHHHHHHcCCEEEEcCHHHHHH
Confidence 999888763 222222333457999999997753 556667766 455568899999999999999998888887
Q ss_pred HHHHH
Q psy13746 242 ALNRI 246 (294)
Q Consensus 242 v~nri 246 (294)
+...+
T Consensus 161 ~~A~v 165 (370)
T PRK08818 161 VMALV 165 (370)
T ss_pred HHHHH
Confidence 66666
No 62
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=3e-13 Score=124.17 Aligned_cols=208 Identities=18% Similarity=0.194 Sum_probs=140.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
|||+|+ |++|...|.+|+..||+|+.+|+++++++.....+. |.| |
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~---PI~----------------------E------- 48 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGIS---PIY----------------------E------- 48 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCC---CCc----------------------C-------
Confidence 589999 999999999999999999999999999997765432 222 2
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch--------HHHHHHHHHHhcccCC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL--------QIKHQVYRAIDIFMSS 163 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~--------~~k~~~~~~l~~~~~~ 163 (294)
..|+++++++..+ +|+++|+|++++++++|++|.|+|.+. .....+.+++.++++.
T Consensus 49 -------pgLe~ll~~~~~~---------gRl~fTtd~~~a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~ 112 (414)
T COG1004 49 -------PGLEELLKENLAS---------GRLRFTTDYEEAVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDG 112 (414)
T ss_pred -------ccHHHHHHhcccc---------CcEEEEcCHHHHHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCC
Confidence 4466666655333 458999999999999999999998843 3456677889998888
Q ss_pred CeEEEecCCCCCHHH---HHhhcC--CCCceeeeeecCCCC--C--------CCeEEEecCCCCCHHHHHHHHHHHHHc-
Q psy13746 164 NTILSSSTSSFLPSV---LSEHST--HRSQFIVAHPVNPPY--F--------IPLVEIVPAAWTSERVITRTREIMTEI- 227 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~---ia~~l~--~~~~~ig~h~~~p~~--~--------~~lveiv~g~~t~~e~~~~~~~ll~~l- 227 (294)
.++|+ +-||+++.. +.+.+. .+.+-++. -+||.. . .+-- |+-|. .++++.+.++++++..
T Consensus 113 ~~vvV-~KSTVPvGt~~~v~~~i~~~~~~~~f~v-~~NPEFLREG~Av~D~~~PdR-IViG~-~~~~a~~~~~ely~~~~ 188 (414)
T COG1004 113 KAVVV-IKSTVPVGTTEEVRAKIREENSGKDFEV-ASNPEFLREGSAVYDFLYPDR-IVIGV-RSERAAAVLRELYAPFL 188 (414)
T ss_pred CeEEE-EcCCCCCCchHHHHHHHHhhcccCCceE-ecChHHhcCcchhhhccCCCe-EEEcc-CChhHHHHHHHHHhhhh
Confidence 77766 578887663 222221 11111111 122321 0 1111 44443 2444667777777665
Q ss_pred -CCeeEEEcc-cc---cccHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 228 -GMKPVTLTT-EI---RGFALNRIQF---AVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 228 -G~~~v~v~~-~~---~g~v~nri~~---a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
...|+.++. .. -.+..|.+++ +++||...+|++.++|.++|.+.+.
T Consensus 189 ~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~~gIG 242 (414)
T COG1004 189 RQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQVAEGIG 242 (414)
T ss_pred hcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcC
Confidence 334444432 22 2456787775 5899999999999999999988753
No 63
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.56 E-value=3e-13 Score=128.65 Aligned_cols=203 Identities=16% Similarity=0.206 Sum_probs=131.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.++|.+|++ ||+|++||+++++++...+... .+++.
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~-------------------------~~~e~------ 54 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVD-------------------------VNLET------ 54 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCC-------------------------CCCCC------
Confidence 689999 9999999999877 6999999999999887652211 01111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch--------HHHHHHHHHHhcccCC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL--------QIKHQVYRAIDIFMSS 163 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~--------~~k~~~~~~l~~~~~~ 163 (294)
.++++.+. +++.++++.+ ++++||++|.|+|.+. .......+.|.+++++
T Consensus 55 --------~~~~l~~~-------------g~l~~t~~~~-~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~ 112 (425)
T PRK15182 55 --------TEEELREA-------------RYLKFTSEIE-KIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNR 112 (425)
T ss_pred --------CHHHHHhh-------------CCeeEEeCHH-HHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCC
Confidence 11122212 2356677776 6899999999999763 2222334678888898
Q ss_pred CeEEEecCCCCCHHHHHh----hcCC--C----CceeeeeecCCCC---------CCCeEEEecCCCCCHHHHHHHHHHH
Q psy13746 164 NTILSSSTSSFLPSVLSE----HSTH--R----SQFIVAHPVNPPY---------FIPLVEIVPAAWTSERVITRTREIM 224 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia~----~l~~--~----~~~ig~h~~~p~~---------~~~lveiv~g~~t~~e~~~~~~~ll 224 (294)
+.+|+ ..||+++....+ .+.. . ..|.-.| +|.. ...+-.++.| .+++..+.+++++
T Consensus 113 g~lVI-~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~--~PE~v~~G~a~~~~~~~~riv~G--~~~~~~~~~~~ly 187 (425)
T PRK15182 113 GDIVV-YESTVYPGCTEEECVPILARMSGMTFNQDFYVGY--SPERINPGDKKHRLTNIKKITSG--STAQIAELIDEVY 187 (425)
T ss_pred CCEEE-EecCCCCcchHHHHHHHHHhccCCCcCCCeeEee--CCCcCCCCcccccccCCCeEEEC--CCHHHHHHHHHHH
Confidence 88876 456666553322 2211 1 1111111 2221 1123346667 3678889999999
Q ss_pred HHcC-CeeEEEcccccc---cHHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHHcc
Q psy13746 225 TEIG-MKPVTLTTEIRG---FALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMSEG 275 (294)
Q Consensus 225 ~~lG-~~~v~v~~~~~g---~v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~~g 275 (294)
+.+. ..+++++.-..+ .++|+++ .+++||+..++++.|+|+.++.+++...
T Consensus 188 ~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~ 246 (425)
T PRK15182 188 QQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK 246 (425)
T ss_pred HHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC
Confidence 9986 345666422222 2455554 3689999999999999999999986544
No 64
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.50 E-value=1e-12 Score=133.48 Aligned_cols=163 Identities=21% Similarity=0.259 Sum_probs=123.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
+++|+|| |.||.++|..+.+.| ++|++||+++++++.+.+
T Consensus 3 ~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~------------------------------------ 46 (735)
T PRK14806 3 FGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVS------------------------------------ 46 (735)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHH------------------------------------
Confidence 5789999 999999999999999 489999999988665432
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.|..+ ...+++.++++++|+||+|+|.+. ..++++++.++++++++|+
T Consensus 47 ------------------~g~~~------------~~~~~~~~~~~~aDvVilavp~~~--~~~vl~~l~~~~~~~~ii~ 94 (735)
T PRK14806 47 ------------------LGVID------------RGEEDLAEAVSGADVIVLAVPVLA--MEKVLADLKPLLSEHAIVT 94 (735)
T ss_pred ------------------CCCCC------------cccCCHHHHhcCCCEEEECCCHHH--HHHHHHHHHHhcCCCcEEE
Confidence 12110 123466677899999999999763 5788899998888888887
Q ss_pred ecCCCC--CHHHHHhhcC-CCCceeeeeecCCCC------------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEE
Q psy13746 169 SSTSSF--LPSVLSEHST-HRSQFIVAHPVNPPY------------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVT 233 (294)
Q Consensus 169 s~tSt~--~~~~ia~~l~-~~~~~ig~h~~~p~~------------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~ 233 (294)
+.+|+. ....+.+.+. .+.||++.|||.... .++.+.++++..++++.++.++++++.+|.++++
T Consensus 95 d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G~~~~~ 174 (735)
T PRK14806 95 DVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVGADVLH 174 (735)
T ss_pred EcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 655532 2445555543 357899999987432 2456678888888999999999999999999999
Q ss_pred EcccccccHH
Q psy13746 234 LTTEIRGFAL 243 (294)
Q Consensus 234 v~~~~~g~v~ 243 (294)
++.+.++.+.
T Consensus 175 ~~~~~hD~~~ 184 (735)
T PRK14806 175 MDVAHHDEVL 184 (735)
T ss_pred cCHHHHhHHH
Confidence 8656666543
No 65
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.49 E-value=2.4e-12 Score=118.27 Aligned_cols=198 Identities=20% Similarity=0.242 Sum_probs=128.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.||..|+++|++|++||++++.++...+...+ ..|
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~--~~~------------------------------ 49 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADREN--PRY------------------------------ 49 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcc--ccc------------------------------
Confidence 589999 9999999999999999999999999887765432100 000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
+ .+ .....+++.++++.++++++|+||.|+|.. ....++.++.+.+++++++++.+
T Consensus 50 ---------~-----~~--------~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~--~~~~v~~~l~~~~~~~~~vi~~~ 105 (325)
T PRK00094 50 ---------L-----PG--------IKLPDNLRATTDLAEALADADLILVAVPSQ--ALREVLKQLKPLLPPDAPIVWAT 105 (325)
T ss_pred ---------C-----CC--------CcCCCCeEEeCCHHHHHhCCCEEEEeCCHH--HHHHHHHHHHhhcCCCCEEEEEe
Confidence 0 00 000112455677877789999999999985 35678888988888888887766
Q ss_pred CCCCHH-------HHHhhcCCCCceeeeeecC-CCC-----CC-CeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 172 SSFLPS-------VLSEHSTHRSQFIVAHPVN-PPY-----FI-PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 172 St~~~~-------~ia~~l~~~~~~ig~h~~~-p~~-----~~-~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
.++.++ .+++.+.. +....++. |.. .+ ....++.+ .+.+.++++.++|+..|.++.+. .+
T Consensus 106 ngv~~~~~~~~~~~l~~~~~~---~~~~~~~~~P~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~-~d 179 (325)
T PRK00094 106 KGIEPGTGKLLSEVLEEELPD---LAPIAVLSGPSFAKEVARGLPTAVVIAS--TDEELAERVQELFHSPYFRVYTN-TD 179 (325)
T ss_pred ecccCCCCCcHHHHHHHHcCC---CCceEEEECccHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCCCCEEEEec-CC
Confidence 565542 22222211 01111222 221 11 12223333 37888999999999999877665 34
Q ss_pred cccc---------------------HHHHHH----HHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 238 IRGF---------------------ALNRIQ----FAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 238 ~~g~---------------------v~nri~----~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
..|. +.|+.+ ...++|++.++++.|++++.+...+.
T Consensus 180 ~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~ 240 (325)
T PRK00094 180 VIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAG 240 (325)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccH
Confidence 3221 122222 34689999999999999999977643
No 66
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.47 E-value=3.6e-12 Score=113.65 Aligned_cols=181 Identities=11% Similarity=0.045 Sum_probs=124.4
Q ss_pred ceEEE--ccccHHHHHHHHHCCCe---EEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYK---VSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~---V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+|+|| |.||++|+..|.+.|+. +.+|++++++.++..+..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~----------------------------------- 46 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERF----------------------------------- 46 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHc-----------------------------------
Confidence 79999 99999999999999864 589999988765443210
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+ ..+.+++..++++++|+||.|+|++. ..+++.++. ..++++|++
T Consensus 47 ------------------~-------------~~~~~~~~~~~~~~aDvVilav~p~~--~~~vl~~l~--~~~~~~vis 91 (258)
T PRK06476 47 ------------------P-------------KVRIAKDNQAVVDRSDVVFLAVRPQI--AEEVLRALR--FRPGQTVIS 91 (258)
T ss_pred ------------------C-------------CceEeCCHHHHHHhCCEEEEEeCHHH--HHHHHHHhc--cCCCCEEEE
Confidence 0 02345677777889999999999543 456776662 456777777
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc-c------cH
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR-G------FA 242 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~-g------~v 242 (294)
..++++.+.++..+....+.+..+|..|...+..+..+.. + .+.++++|+.+|..+.....+.. . +.
T Consensus 92 ~~ag~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~---~---~~~~~~l~~~lG~~~~~~~e~~~d~~~a~~s~~ 165 (258)
T PRK06476 92 VIAATDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYP---P---DPFVAALFDALGTAVECDSEEEYDLLAAASALM 165 (258)
T ss_pred ECCCCCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecC---C---HHHHHHHHHhcCCcEEECChHhccceeehhccH
Confidence 7788999999888765456677778776644333333332 1 15789999999987764321111 1 12
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 243 LNRIQFAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 243 ~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
.| ++ .++.++..++.+.|+++++..+++.
T Consensus 166 a~-~~-~~~~~~~~~~~~~Gl~~~~a~~~~~ 194 (258)
T PRK06476 166 AT-YF-GILETATGWLEEQGLKRQKARAYLA 194 (258)
T ss_pred HH-HH-HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 22 22 3677777888999999888776654
No 67
>PLN02712 arogenate dehydrogenase
Probab=99.43 E-value=7.8e-12 Score=124.89 Aligned_cols=162 Identities=15% Similarity=0.134 Sum_probs=115.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
..++|+|| |.||+++|..|.+.|++|++||+++.. +.+.+
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~------------------------------------- 409 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQK------------------------------------- 409 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHH-------------------------------------
Confidence 44689999 999999999999999999999998542 21110
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhcc-CCcEEEEcCCcchHHHHHHHHHHhc-ccCCCeEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE-DAIFIQESVPEILQIKHQVYRAIDI-FMSSNTIL 167 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~-~aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii 167 (294)
.| +...++++++++ ++|+||.|+|... ...++.++.. .++++++|
T Consensus 410 -----------------~G--------------v~~~~~~~el~~~~aDvVILavP~~~--~~~vi~~l~~~~lk~g~iv 456 (667)
T PLN02712 410 -----------------LG--------------VSYFSDADDLCEEHPEVILLCTSILS--TEKVLKSLPFQRLKRSTLF 456 (667)
T ss_pred -----------------cC--------------CeEeCCHHHHHhcCCCEEEECCChHH--HHHHHHHHHHhcCCCCcEE
Confidence 12 123456766555 5999999999643 4567777764 57889999
Q ss_pred EecCCCC--CHHHHHhhcCCCCceeeeeecCCCCCCC-----eE-----EEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q psy13746 168 SSSTSSF--LPSVLSEHSTHRSQFIVAHPVNPPYFIP-----LV-----EIVPAAWTSERVITRTREIMTEIGMKPVTLT 235 (294)
Q Consensus 168 ~s~tSt~--~~~~ia~~l~~~~~~ig~h~~~p~~~~~-----lv-----eiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~ 235 (294)
++.+|+. ....+...++...+|++.|||.++..++ .. .++.++....+.++.+.++++.+|.+++.+.
T Consensus 457 vDv~SvK~~~~~~~~~~l~~~~~~v~~HPm~G~e~~~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~vv~ms 536 (667)
T PLN02712 457 VDVLSVKEFPRNLFLQHLPQDFDILCTHPMFGPESGKNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCRMVEMS 536 (667)
T ss_pred EECCCccHHHHHHHHHhccCCCceEeeCCCCCccccccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCEEEEeC
Confidence 9887763 3445555555556799999999876431 11 1233444455667778899999999999997
Q ss_pred ccccccHHH
Q psy13746 236 TEIRGFALN 244 (294)
Q Consensus 236 ~~~~g~v~n 244 (294)
++.+..+..
T Consensus 537 ~eeHD~~~A 545 (667)
T PLN02712 537 CAEHDWHAA 545 (667)
T ss_pred HHHHHHHHH
Confidence 777776444
No 68
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.43 E-value=1.3e-11 Score=109.02 Aligned_cols=191 Identities=12% Similarity=0.069 Sum_probs=128.8
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCC---e-EEEEeCC-hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEe
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGY---K-VSLYDVL-SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLY 83 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~---~-V~~~d~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 83 (294)
|+.+||+|| |.||++++..+++.|+ + +++++++ +++.+...+..
T Consensus 2 m~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~----------------------------- 52 (245)
T PRK07634 2 LKKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY----------------------------- 52 (245)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc-----------------------------
Confidence 344689999 9999999999998873 3 7788874 55554332210
Q ss_pred ecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCC
Q psy13746 84 DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSS 163 (294)
Q Consensus 84 d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~ 163 (294)
| +..+.++.+++.++|+||.|+|... -+++++++.++++
T Consensus 53 ------------------------~--------------~~~~~~~~~~~~~~DiViiavp~~~--~~~v~~~l~~~~~- 91 (245)
T PRK07634 53 ------------------------N--------------VSTTTDWKQHVTSVDTIVLAMPPSA--HEELLAELSPLLS- 91 (245)
T ss_pred ------------------------C--------------cEEeCChHHHHhcCCEEEEecCHHH--HHHHHHHHHhhcc-
Confidence 1 2345677778899999999999864 4677888877666
Q ss_pred CeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCe-EEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccH
Q psy13746 164 NTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL-VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA 242 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~l-veiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v 242 (294)
+.+|++.+.+++++.+.+.++...+++..||..|...+.. ..++.....+++..+.++.+|+.+|..+. +. +..-..
T Consensus 92 ~~~vis~~~gi~~~~l~~~~~~~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~-~~-e~~~~~ 169 (245)
T PRK07634 92 NQLVVTVAAGIGPSYLEERLPKGTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGIGTSQL-CT-EEEVHQ 169 (245)
T ss_pred CCEEEEECCCCCHHHHHHHcCCCCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEE-EC-HHHcch
Confidence 4577788889999999888765556777888766544332 23445556789999999999999998875 53 322111
Q ss_pred HH-------HHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 243 LN-------RIQFAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 243 ~n-------ri~~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
.. ..+..++......+.+.|+++++-.+++.
T Consensus 170 ~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~ 207 (245)
T PRK07634 170 LTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVI 207 (245)
T ss_pred HHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 11122233333556666788887555443
No 69
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.40 E-value=6.5e-11 Score=108.61 Aligned_cols=206 Identities=17% Similarity=0.234 Sum_probs=137.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.+|+|| |++|.++|..++++|++|+++|+++.+++..... ++| +.+++.+.
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G-----~~~--------------------i~e~~~~~-- 62 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRG-----ESY--------------------IEEPDLDE-- 62 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCC-----cce--------------------eecCcHHH--
Confidence 799999 9999999999999999999999999998865432 223 23333322
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch--------HHHHHHHHHHhcccCC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL--------QIKHQVYRAIDIFMSS 163 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~--------~~k~~~~~~l~~~~~~ 163 (294)
.+++.++.| +++.|+|..+ ++.||++|.|+|..+ .......+.|.+.+.+
T Consensus 63 --------~v~~~v~~g-------------~lraTtd~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~k 120 (436)
T COG0677 63 --------VVKEAVESG-------------KLRATTDPEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKK 120 (436)
T ss_pred --------HHHHHHhcC-------------CceEecChhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCC
Confidence 133333333 4788999986 789999999999854 3345666789999999
Q ss_pred CeEEEecCCCCCHH---HHHhh-------cCCCCceeeeeecCCCCC---------CCeEEEecCCCCCHHHHHHHHHHH
Q psy13746 164 NTILSSSTSSFLPS---VLSEH-------STHRSQFIVAHPVNPPYF---------IPLVEIVPAAWTSERVITRTREIM 224 (294)
Q Consensus 164 ~~ii~s~tSt~~~~---~ia~~-------l~~~~~~ig~h~~~p~~~---------~~lveiv~g~~t~~e~~~~~~~ll 224 (294)
+.+++.- ||.++. ++..- +..+..|.-.| .|.+. .....+++| .+|+..+.+..++
T Consensus 121 G~LVIlE-ST~~PGTTe~v~~plle~~sgL~~~~Df~lay--sPERv~PG~~~~el~~~~kVIgG--~tp~~~e~a~~lY 195 (436)
T COG0677 121 GDLVILE-STTPPGTTEEVVKPLLEERSGLKFGEDFYLAY--SPERVLPGNVLKELVNNPKVIGG--VTPKCAELAAALY 195 (436)
T ss_pred CCEEEEe-cCCCCCcHHHHHHHHHhhcCCCcccceeeEee--CccccCCCchhhhhhcCCceeec--CCHHHHHHHHHHH
Confidence 9887744 443333 22221 22222222222 22211 123347777 6899999999999
Q ss_pred HHcCCeeEEEccccc----ccHHHH---HHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 225 TEIGMKPVTLTTEIR----GFALNR---IQFAVLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 225 ~~lG~~~v~v~~~~~----g~v~nr---i~~a~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
+.+-...+.+..... ..+-|. +..++.||-..++++-|+|.-++.++-.
T Consensus 196 ~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIeaAn 251 (436)
T COG0677 196 KTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIEAAN 251 (436)
T ss_pred HHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHhc
Confidence 998877666642111 122231 2368899999999999999777666544
No 70
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.40 E-value=2.8e-11 Score=107.50 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=120.4
Q ss_pred cceEEE--ccccHHHHHHHHHCC----CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG----YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G----~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
++|+|| |.||.+|+..|.++| .+|++.++++++.....+..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~--------------------------------- 48 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY--------------------------------- 48 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc---------------------------------
Confidence 689999 999999999999999 68999999999876332211
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| +..+++..+++..+|+||.|+.+.. -.+++.++.. ..++.+|
T Consensus 49 --------------------g--------------~~~~~~~~~~~~~advv~LavKPq~--~~~vl~~l~~-~~~~~lv 91 (266)
T COG0345 49 --------------------G--------------VVTTTDNQEAVEEADVVFLAVKPQD--LEEVLSKLKP-LTKDKLV 91 (266)
T ss_pred --------------------C--------------CcccCcHHHHHhhCCEEEEEeChHh--HHHHHHHhhc-ccCCCEE
Confidence 1 1125666678899999999997643 5678888887 7788888
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEE-EecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE-IVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
+|...+++++.+...+. ..+++...|..|...+..+. +..+...+++..+++..+|+.+|.. +++
T Consensus 92 ISiaAGv~~~~l~~~l~-~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~v-~~v 157 (266)
T COG0345 92 ISIAAGVSIETLERLLG-GLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGKV-VEV 157 (266)
T ss_pred EEEeCCCCHHHHHHHcC-CCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCCe-EEe
Confidence 89999999999999987 67888999988886665444 6666788999999999999999965 455
No 71
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.39 E-value=3.7e-12 Score=117.50 Aligned_cols=197 Identities=17% Similarity=0.138 Sum_probs=124.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||.+||..|+++|++|++|+++++..+.......+. .|
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~--~~------------------------------ 52 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENR--EY------------------------------ 52 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCccc--cc------------------------------
Confidence 589999 99999999999999999999999988776554321100 00
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.++ .....++..++++.++++++|+||.|+|... + ++++ +.+++++++++.+
T Consensus 53 ------------------~~g----~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~~-~-~~v~----~~l~~~~~vi~~~ 104 (328)
T PRK14618 53 ------------------LPG----VALPAELYPTADPEEALAGADFAVVAVPSKA-L-RETL----AGLPRALGYVSCA 104 (328)
T ss_pred ------------------CCC----CcCCCCeEEeCCHHHHHcCCCEEEEECchHH-H-HHHH----HhcCcCCEEEEEe
Confidence 000 0111224566788878899999999999873 2 3444 4456677776655
Q ss_pred CCCC-----HHHHHhhcCC----CCceeeeeecCCCC---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 172 SSFL-----PSVLSEHSTH----RSQFIVAHPVNPPY---FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 172 St~~-----~~~ia~~l~~----~~~~ig~h~~~p~~---~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
.++. ...+++.+.. +..+++ .|..+.. ....+.++.+ .+++.+++++++|+..|.++.+. .|.-
T Consensus 105 ~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~-gP~~a~~~~~~~~~~~~~~~--~~~~~~~~v~~ll~~~~~~v~~~-~di~ 180 (328)
T PRK14618 105 KGLAPDGGRLSELARVLEFLTQARVAVLS-GPNHAEEIARFLPAATVVAS--PEPGLARRVQAAFSGPSFRVYTS-RDRV 180 (328)
T ss_pred eccccCCCccchHHHHHHHhcCCCeEEEE-CccHHHHHHcCCCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEec-CCcc
Confidence 5544 3344444321 111111 1111111 1123344444 47899999999999999887642 2221
Q ss_pred c----------------c-----HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHc
Q psy13746 240 G----------------F-----ALNRI----QFAVLNECYHLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 240 g----------------~-----v~nri----~~a~~~Ea~~l~~~~~~~~~~id~a~~~ 274 (294)
| . +.|++ +...++|++.++++.|++++.+...+..
T Consensus 181 g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~ 240 (328)
T PRK14618 181 GVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGL 240 (328)
T ss_pred chhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcch
Confidence 1 1 11222 2346899999999999999999888654
No 72
>PRK07680 late competence protein ComER; Validated
Probab=99.39 E-value=3.6e-11 Score=108.14 Aligned_cols=150 Identities=15% Similarity=0.154 Sum_probs=108.1
Q ss_pred ceEEE--ccccHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
+|+|| |.||++||..|.++|+ +|++|||++++.+...+..
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~---------------------------------- 47 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERY---------------------------------- 47 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHc----------------------------------
Confidence 69999 9999999999999994 7999999987765432210
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.| +..+.+..+++.++|+||.|+|... -.++++++.++++++++|+
T Consensus 48 ------------------~g--------------~~~~~~~~~~~~~aDiVilav~p~~--~~~vl~~l~~~l~~~~~ii 93 (273)
T PRK07680 48 ------------------PG--------------IHVAKTIEEVISQSDLIFICVKPLD--IYPLLQKLAPHLTDEHCLV 93 (273)
T ss_pred ------------------CC--------------eEEECCHHHHHHhCCEEEEecCHHH--HHHHHHHHHhhcCCCCEEE
Confidence 01 3445677777899999999998654 4577888888888888888
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCCCCC-CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLT 235 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~-~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~ 235 (294)
+.+++++.+.++..+. .+.+..+|..|... .....++.++..+++..+.++++|+.+| .++++.
T Consensus 94 s~~ag~~~~~L~~~~~--~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G-~~~~i~ 158 (273)
T PRK07680 94 SITSPISVEQLETLVP--CQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNIS-TPLVIE 158 (273)
T ss_pred EECCCCCHHHHHHHcC--CCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCC-CEEEEC
Confidence 8888888888887764 23333444323211 1223345566678888999999999999 456664
No 73
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.39 E-value=1.4e-11 Score=110.93 Aligned_cols=153 Identities=16% Similarity=0.140 Sum_probs=108.1
Q ss_pred cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHH
Q psy13746 21 LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHT 100 (294)
Q Consensus 21 ~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 100 (294)
+=|++||.+|+++||+|++||+++++++...
T Consensus 30 ~gGspMArnLlkAGheV~V~Drnrsa~e~e~------------------------------------------------- 60 (341)
T TIGR01724 30 YGGSRMAIEFAMAGHDVVLAEPNREFMSDDL------------------------------------------------- 60 (341)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCChhhhhhhh-------------------------------------------------
Confidence 3489999999999999999999987654211
Q ss_pred HHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHH
Q psy13746 101 LQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLS 180 (294)
Q Consensus 101 l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia 180 (294)
++.+.+.| ...+++..++++++|+||.|+|.+..++ +++..+.+.++++++|+ ++||++++.+.
T Consensus 61 ~e~LaeaG--------------A~~AaS~aEAAa~ADVVIL~LPd~aaV~-eVl~GLaa~L~~GaIVI-D~STIsP~t~~ 124 (341)
T TIGR01724 61 WKKVEDAG--------------VKVVSDDKEAAKHGEIHVLFTPFGKGTF-SIARTIIEHVPENAVIC-NTCTVSPVVLY 124 (341)
T ss_pred hHHHHHCC--------------CeecCCHHHHHhCCCEEEEecCCHHHHH-HHHHHHHhcCCCCCEEE-ECCCCCHHHHH
Confidence 11112223 2456778889999999999999776554 45677888899999887 57888888655
Q ss_pred hhcC----CCCceeeeeecCCCC----CCCeEEEecCC------CCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 181 EHST----HRSQFIVAHPVNPPY----FIPLVEIVPAA------WTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 181 ~~l~----~~~~~ig~h~~~p~~----~~~lveiv~g~------~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
..+. ...+-+|...|+|.- .+.-.-++.|. -.++|.++++.++.+..|+.++.++.+-
T Consensus 125 ~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~~pa~l 196 (341)
T TIGR01724 125 YSLEKILRLKRTDVGISSMHPAAVPGTPQHGHYVIGGKPTAGKEMATEEQISKCVELAKSTGKKAYVVPADV 196 (341)
T ss_pred HHHHHHhhcCccccCeeccCCCCCCCCCCCceeeeccccccccccCCHHHHHHHHHHHHHhCCCeeecchhh
Confidence 5443 234566766666642 12222233332 3578999999999999999999986543
No 74
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.38 E-value=2.6e-11 Score=116.62 Aligned_cols=209 Identities=13% Similarity=0.142 Sum_probs=134.3
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++|+|| |.+|..+|..|+++| ++|+++|+++++++...+... .+++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~-------------------------~~~e----- 51 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQL-------------------------PIYE----- 51 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCC-------------------------ccCC-----
Confidence 689999 999999999999984 889999999999887643211 0111
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch-------------HHHHHHHHH
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL-------------QIKHQVYRA 156 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~-------------~~k~~~~~~ 156 (294)
..+.+++.++ ...++++++++.+++++||++|.|+|.+. .....+.++
T Consensus 52 ---------~gl~ell~~~----------~~~~l~~t~~~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~ 112 (473)
T PLN02353 52 ---------PGLDEVVKQC----------RGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARM 112 (473)
T ss_pred ---------CCHHHHHHHh----------hcCCEEEEcCHHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHH
Confidence 1122222111 01247889999888999999999997543 244567788
Q ss_pred HhcccCCCeEEEecCCCCCHHH---HHhhcCC--C-CceeeeeecCCCCC---------CCeEEE-ecCCC--CCHHHHH
Q psy13746 157 IDIFMSSNTILSSSTSSFLPSV---LSEHSTH--R-SQFIVAHPVNPPYF---------IPLVEI-VPAAW--TSERVIT 218 (294)
Q Consensus 157 l~~~~~~~~ii~s~tSt~~~~~---ia~~l~~--~-~~~ig~h~~~p~~~---------~~lvei-v~g~~--t~~e~~~ 218 (294)
|.++++++++|+ ..||+++.. +...+.. + ..|.- -++|... ...-.+ +++.. +.++..+
T Consensus 113 i~~~l~~~~lVv-~~STvp~Gtt~~~~~~l~~~~~g~~f~v--~~~PErl~~G~a~~d~~~p~riViG~~~~~~~~~a~~ 189 (473)
T PLN02353 113 IADVSKSDKIVV-EKSTVPVKTAEAIEKILTHNSKGINFQI--LSNPEFLAEGTAIEDLFKPDRVLIGGRETPEGQKAVQ 189 (473)
T ss_pred HHhhCCCCcEEE-EeCCCCCChHHHHHHHHHhhCCCCCeEE--EECCCccCCCCcccccCCCCEEEEccCCchhhHHHHH
Confidence 999999998876 466666553 2222211 1 11110 1233211 112224 45531 1256788
Q ss_pred HHHHHHHHcCC-eeEEEcc-c---ccccHHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHc
Q psy13746 219 RTREIMTEIGM-KPVTLTT-E---IRGFALNRIQ---FAVLNECYHLVHDGVLSAKDIDRVMSE 274 (294)
Q Consensus 219 ~~~~ll~~lG~-~~v~v~~-~---~~g~v~nri~---~a~~~Ea~~l~~~~~~~~~~id~a~~~ 274 (294)
.+++++..+-. .++.+.. . -..++.|... .+++||...+|++.++|..++.+++..
T Consensus 190 ~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~~~~~~ 253 (473)
T PLN02353 190 ALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVSHAVGK 253 (473)
T ss_pred HHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 99999998853 3444421 1 2234566554 478999999999999999999988764
No 75
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.37 E-value=7.4e-11 Score=106.40 Aligned_cols=151 Identities=13% Similarity=0.042 Sum_probs=115.4
Q ss_pred cceEEE--ccccHHHHHHHHHCC----CeEEEEeCChHH-HHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG----YKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G----~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
++|+|| |.||++||..|.++| ++|.+|+++++. .+.....
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~--------------------------------- 48 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDK--------------------------------- 48 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHH---------------------------------
Confidence 589999 999999999999998 789999997533 2211110
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
. .....+.+..+++.++|+||.|+|... -.+++.++.++++++++
T Consensus 49 ---------------------~------------~~~~~~~~~~e~~~~aDvVilavpp~~--~~~vl~~l~~~l~~~~~ 93 (277)
T PRK06928 49 ---------------------Y------------PTVELADNEAEIFTKCDHSFICVPPLA--VLPLLKDCAPVLTPDRH 93 (277)
T ss_pred ---------------------c------------CCeEEeCCHHHHHhhCCEEEEecCHHH--HHHHHHHHHhhcCCCCE
Confidence 0 012345677777899999999999654 45788888888888888
Q ss_pred EEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEE-EecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 167 LSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE-IVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 167 i~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lve-iv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
|+|...+++.+++.+.++. .+++...|..|...+..+. +..++..+++..+.++.+|+.+|... ++
T Consensus 94 ivS~~aGi~~~~l~~~~~~-~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~~-~v 160 (277)
T PRK06928 94 VVSIAAGVSLDDLLEITPG-LQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSHVM-TI 160 (277)
T ss_pred EEEECCCCCHHHHHHHcCC-CCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCCEE-EE
Confidence 8888889999999987753 4788888988876655444 55667788999999999999999765 44
No 76
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.36 E-value=5.1e-11 Score=109.12 Aligned_cols=184 Identities=16% Similarity=0.075 Sum_probs=128.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..|...|++|++++++.++.....+
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~-------------------------------------- 58 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAE-------------------------------------- 58 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHH--------------------------------------
Confidence 3689999 999999999999999999999887544321110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~s 169 (294)
+.| +.. .+..++++.||+|+.++|+... ..++ +++.+.++++++| +
T Consensus 59 ---------------~~G--------------~~~-~s~~eaa~~ADVVvLaVPd~~~--~~V~~~~I~~~Lk~g~iL-~ 105 (330)
T PRK05479 59 ---------------ADG--------------FEV-LTVAEAAKWADVIMILLPDEVQ--AEVYEEEIEPNLKEGAAL-A 105 (330)
T ss_pred ---------------HCC--------------Cee-CCHHHHHhcCCEEEEcCCHHHH--HHHHHHHHHhcCCCCCEE-E
Confidence 012 222 3677889999999999997654 5676 7899999999988 5
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCC-------CCCeE-EEe-cCCCCCHHHHHHHHHHHHHcCCeeE-----EEc
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPY-------FIPLV-EIV-PAAWTSERVITRTREIMTEIGMKPV-----TLT 235 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~-------~~~lv-eiv-~g~~t~~e~~~~~~~ll~~lG~~~v-----~v~ 235 (294)
..++..+..+....+...+++-..|..|.. .+.-+ -++ .....+.+..+.+..++..+|..+. .+.
T Consensus 106 ~a~G~~i~~~~~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~ 185 (330)
T PRK05479 106 FAHGFNIHFGQIVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGVIETTFK 185 (330)
T ss_pred ECCCCChhhceeccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccceeeeeec
Confidence 778888776654444445677777877765 33322 233 3444568889999999999999865 443
Q ss_pred ccc-cccH-----HHHHHHHHHHHHHHHHHcCCCCHHH
Q psy13746 236 TEI-RGFA-----LNRIQFAVLNECYHLVHDGVLSAKD 267 (294)
Q Consensus 236 ~~~-~g~v-----~nri~~a~~~Ea~~l~~~~~~~~~~ 267 (294)
.+. .... .-.-+..++..++..+.+.|.+|+.
T Consensus 186 ~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~ 223 (330)
T PRK05479 186 EETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEM 223 (330)
T ss_pred ccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHH
Confidence 332 2222 2222335677888888888888876
No 77
>PLN02712 arogenate dehydrogenase
Probab=99.35 E-value=6.7e-11 Score=118.23 Aligned_cols=163 Identities=17% Similarity=0.052 Sum_probs=112.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+++|..|.+.|++|++||++... +.+.+
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~--------------------------------------- 92 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARS--------------------------------------- 92 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHH---------------------------------------
Confidence 589999 999999999999999999999998543 22111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhc-cCCcEEEEcCCcchHHHHHHHHHHh-cccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL-EDAIFIQESVPEILQIKHQVYRAID-IFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~-~~aDlVieavpe~~~~k~~~~~~l~-~~~~~~~ii~s 169 (294)
.| +...+++.+.+ .++|+||.|+|... ..+++.++. ..++++++|++
T Consensus 93 ---------------~G--------------v~~~~d~~e~~~~~aDvViLavP~~~--~~~vl~~l~~~~l~~g~iVvD 141 (667)
T PLN02712 93 ---------------LG--------------VSFFLDPHDLCERHPDVILLCTSIIS--TENVLKSLPLQRLKRNTLFVD 141 (667)
T ss_pred ---------------cC--------------CEEeCCHHHHhhcCCCEEEEcCCHHH--HHHHHHhhhhhcCCCCeEEEE
Confidence 12 22345666644 57999999999653 457778775 56788999988
Q ss_pred cCCCCC--HHHHHhhcCCCCceeeeeecCCCCC------CCeEEEe----cCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 170 STSSFL--PSVLSEHSTHRSQFIVAHPVNPPYF------IPLVEIV----PAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 170 ~tSt~~--~~~ia~~l~~~~~~ig~h~~~p~~~------~~lveiv----~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
.+|... ...+...++...+|++.|||..+.. +..+.+. +.+....+.++.++++++.+|.+++.+.++
T Consensus 142 v~SvK~~~~~~l~~~l~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v~~ms~e 221 (667)
T PLN02712 142 VLSVKEFAKNLLLDYLPEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKMVEMSCT 221 (667)
T ss_pred CCCCcHHHHHHHHHhcCCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEEEEeCHH
Confidence 776542 2234455544457999999997751 1112222 222233456788889999999999999777
Q ss_pred ccccHHHHHH
Q psy13746 238 IRGFALNRIQ 247 (294)
Q Consensus 238 ~~g~v~nri~ 247 (294)
.+..+...+.
T Consensus 222 eHD~~~A~vs 231 (667)
T PLN02712 222 EHDKYAAESQ 231 (667)
T ss_pred HHHHHHHHHH
Confidence 7776554443
No 78
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.30 E-value=2.1e-11 Score=111.63 Aligned_cols=168 Identities=16% Similarity=0.146 Sum_probs=113.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||++||..|+.+||+|++|+|++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~---------------------------------------------- 38 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG---------------------------------------------- 38 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC----------------------------------------------
Confidence 589999 99999999999999999999998742
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcc-cCCCeEEEec
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSSS 170 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~-~~~~~ii~s~ 170 (294)
+++.++++++|+||.|+|.+ ..+.++.++..+ +++++++++.
T Consensus 39 -----------------------------------~~~~~~~~~advvi~~vp~~--~~~~v~~~l~~~~~~~~~ivi~~ 81 (308)
T PRK14619 39 -----------------------------------LSLAAVLADADVIVSAVSMK--GVRPVAEQVQALNLPPETIIVTA 81 (308)
T ss_pred -----------------------------------CCHHHHHhcCCEEEEECChH--HHHHHHHHHHHhcCCCCcEEEEe
Confidence 13445678999999999985 356777888764 6788888876
Q ss_pred CCCCCHHH---H----HhhcCCCCceeeeeecCCC------CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 171 TSSFLPSV---L----SEHSTHRSQFIVAHPVNPP------YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 171 tSt~~~~~---i----a~~l~~~~~~ig~h~~~p~------~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
+.++.+.. + ...+.. .+++. +..|. ...+...++.+ .+++.++.++++|+..|.++++. .|
T Consensus 82 s~gi~~~~~~~~s~~~~~~~~~-~~v~~--i~gp~~a~ei~~~~~~~~~~ag--~~~~~~~~v~~ll~~~~~~~~~~-~d 155 (308)
T PRK14619 82 TKGLDPETTRTPSQIWQAAFPN-HPVVV--LSGPNLSKEIQQGLPAATVVAS--RDLAAAETVQQIFSSERFRVYTN-SD 155 (308)
T ss_pred CCcccCCCCcCHHHHHHHHcCC-CceEE--EECCCcHHHHhcCCCeEEEEEe--CCHHHHHHHHHHhCCCcEEEEec-CC
Confidence 65454332 1 111111 11210 01221 11123334444 47899999999999999888765 34
Q ss_pred ccc-c--------------------HHHHHH----HHHHHHHHHHHHcCCCCHHHHHH
Q psy13746 238 IRG-F--------------------ALNRIQ----FAVLNECYHLVHDGVLSAKDIDR 270 (294)
Q Consensus 238 ~~g-~--------------------v~nri~----~a~~~Ea~~l~~~~~~~~~~id~ 270 (294)
..| . +.++.. ...++|++++++..|++++.+..
T Consensus 156 ~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~ 213 (308)
T PRK14619 156 PLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYG 213 (308)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCcccccc
Confidence 222 0 122222 34689999999999999888866
No 79
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.24 E-value=6.2e-10 Score=99.45 Aligned_cols=143 Identities=14% Similarity=0.118 Sum_probs=106.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC----eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY----KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~----~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
+||+|| |.||++|+..+.++|. +++++|+++++..
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~~--------------------------------------- 44 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNTP--------------------------------------- 44 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcCC---------------------------------------
Confidence 589999 9999999999999872 4889988764310
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.....+..+++.++|+||.|+|... -.+++.++.++++++.|
T Consensus 45 -----------------------------------~~~~~~~~~~~~~~D~Vilavkp~~--~~~vl~~i~~~l~~~~i- 86 (260)
T PTZ00431 45 -----------------------------------FVYLQSNEELAKTCDIIVLAVKPDL--AGKVLLEIKPYLGSKLL- 86 (260)
T ss_pred -----------------------------------eEEeCChHHHHHhCCEEEEEeCHHH--HHHHHHHHHhhccCCEE-
Confidence 1123455566789999999998654 56888898887776554
Q ss_pred EecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 168 SSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
+|...++.++.+...++...+.+...|..|...+. ...++++...+++..+.++.+|+.+|... .+
T Consensus 87 IS~~aGi~~~~l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~~-~v 153 (260)
T PTZ00431 87 ISICGGLNLKTLEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGIIQ-EI 153 (260)
T ss_pred EEEeCCccHHHHHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcEE-EE
Confidence 56778888888888775444455666666654443 44566777788899999999999999765 44
No 80
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.23 E-value=2.6e-11 Score=102.86 Aligned_cols=118 Identities=19% Similarity=0.257 Sum_probs=79.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
|||+|+ |++|..+|..|+.+||+|+++|+++++++...+... + +++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~-----p--------------------~~E------- 48 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGEL-----P--------------------IYE------- 48 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSS-----S--------------------S-C-------
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccc-----c--------------------ccc-------
Confidence 589999 999999999999999999999999999887543211 0 111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcch--------HHHHHHHHHHhcccCC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEIL--------QIKHQVYRAIDIFMSS 163 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~--------~~k~~~~~~l~~~~~~ 163 (294)
..+++++++... .++++++++..++++++|++|.|+|.+. .....+.++|.+++++
T Consensus 49 -------~~l~~ll~~~~~---------~~~l~~t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~ 112 (185)
T PF03721_consen 49 -------PGLDELLKENVS---------AGRLRATTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRP 112 (185)
T ss_dssp -------TTHHHHHHHHHH---------TTSEEEESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCS
T ss_pred -------cchhhhhccccc---------cccchhhhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhh
Confidence 112222221110 1458899999988999999999998643 3346677889999999
Q ss_pred CeEEEecCCCCCHHHHH
Q psy13746 164 NTILSSSTSSFLPSVLS 180 (294)
Q Consensus 164 ~~ii~s~tSt~~~~~ia 180 (294)
+++|+ .-||+++....
T Consensus 113 ~~lvV-~~STvppGtt~ 128 (185)
T PF03721_consen 113 GDLVV-IESTVPPGTTE 128 (185)
T ss_dssp CEEEE-ESSSSSTTHHH
T ss_pred cceEE-EccEEEEeeeh
Confidence 99887 56777766444
No 81
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.21 E-value=2.4e-10 Score=103.59 Aligned_cols=164 Identities=21% Similarity=0.259 Sum_probs=113.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+++|..++++||+|.+|.++++..++..+. |+.+.|++..
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~--~~N~~yLp~i-------------------------- 53 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINET--RENPKYLPGI-------------------------- 53 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhc--CcCccccCCc--------------------------
Confidence 689999 9999999999999999999999999998876554 2223443321
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.....+.+++|+.+++++||+|+.++|... .+++++++..++++++++++.+
T Consensus 54 --------------------------~lp~~l~at~Dl~~a~~~ad~iv~avPs~~--~r~v~~~l~~~l~~~~~iv~~s 105 (329)
T COG0240 54 --------------------------LLPPNLKATTDLAEALDGADIIVIAVPSQA--LREVLRQLKPLLLKDAIIVSAT 105 (329)
T ss_pred --------------------------cCCcccccccCHHHHHhcCCEEEEECChHH--HHHHHHHHhhhccCCCeEEEEe
Confidence 122457889999999999999999999754 6788899988889999988877
Q ss_pred CCCCHH------H-HHhhcCCCCceeeeeecCCCC-------CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 172 SSFLPS------V-LSEHSTHRSQFIVAHPVNPPY-------FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 172 St~~~~------~-ia~~l~~~~~~ig~h~~~p~~-------~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
-++.+. + +.+.++ ...++ ++..|+ ..+....+.+ .|++..+.++.+|..=-.+++.. .|
T Consensus 106 KGie~~t~~l~seii~e~l~--~~~~~--vLSGPs~A~EVa~g~pta~~vas--~d~~~a~~v~~~f~~~~Frvy~~-~D 178 (329)
T COG0240 106 KGLEPETGRLLSEIIEEELP--DNPIA--VLSGPSFAKEVAQGLPTAVVVAS--NDQEAAEKVQALFSSPYFRVYTS-TD 178 (329)
T ss_pred ccccCCCcchHHHHHHHHcC--CCeEE--EEECccHHHHHhcCCCcEEEEec--CCHHHHHHHHHHhCCCcEEEEec-Cc
Confidence 776443 2 223332 11122 222222 1223334444 58888888888887755555554 45
Q ss_pred ccc
Q psy13746 238 IRG 240 (294)
Q Consensus 238 ~~g 240 (294)
..|
T Consensus 179 v~G 181 (329)
T COG0240 179 VIG 181 (329)
T ss_pred hhh
Confidence 554
No 82
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.20 E-value=1.1e-10 Score=96.39 Aligned_cols=104 Identities=31% Similarity=0.372 Sum_probs=78.4
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
||+|+ |.||.++|..++++|++|++|.++++.++...+...+ +.|+..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n--~~~~~~---------------------------- 50 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQN--PKYLPG---------------------------- 50 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSE--TTTSTT----------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCC--CCCCCC----------------------------
Confidence 68999 9999999999999999999999999887766543221 111110
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
.....++..++|++++++++|+||.++|... -+++++++.+++++++++++.+.
T Consensus 51 ------------------------~~l~~~i~~t~dl~~a~~~ad~IiiavPs~~--~~~~~~~l~~~l~~~~~ii~~~K 104 (157)
T PF01210_consen 51 ------------------------IKLPENIKATTDLEEALEDADIIIIAVPSQA--HREVLEQLAPYLKKGQIIISATK 104 (157)
T ss_dssp ------------------------SBEETTEEEESSHHHHHTT-SEEEE-S-GGG--HHHHHHHHTTTSHTT-EEEETS-
T ss_pred ------------------------cccCcccccccCHHHHhCcccEEEecccHHH--HHHHHHHHhhccCCCCEEEEecC
Confidence 1223457889999999999999999999876 56899999999999998887776
Q ss_pred CC
Q psy13746 173 SF 174 (294)
Q Consensus 173 t~ 174 (294)
++
T Consensus 105 G~ 106 (157)
T PF01210_consen 105 GF 106 (157)
T ss_dssp SE
T ss_pred Cc
Confidence 65
No 83
>PF00725 3HCDH: 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain; InterPro: IPR006108 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major region of similarities in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3MOG_A 2WTB_A 3ADP_A 3ADO_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B 3K6J_A 1ZCJ_A ....
Probab=99.20 E-value=1.2e-11 Score=93.86 Aligned_cols=51 Identities=49% Similarity=0.787 Sum_probs=49.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 240 GFALNRIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 240 g~v~nri~~a~~~Ea~~l~~~~~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
||++||++.++++||++++++|.+++++||.+++.++|+| +|||+++|.+|
T Consensus 1 GFi~nRl~~~~~~ea~~l~~egvas~~~ID~~~~~~~G~p---~Gpf~l~D~~G 51 (97)
T PF00725_consen 1 GFIVNRLLAALLNEAARLVEEGVASPEDIDRAMRYGLGFP---MGPFELADLVG 51 (97)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTHS---STHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCC---CccchHHHHhC
Confidence 7999999999999999999999999999999999999999 99999999987
No 84
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.18 E-value=1.3e-09 Score=101.05 Aligned_cols=193 Identities=16% Similarity=0.142 Sum_probs=119.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|+++|++|++||+++. .+...+. |..+. +.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~-----------------------g~~~~--~~------ 50 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAH-----------------------GLTLT--DY------ 50 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhc-----------------------Cceee--cC------
Confidence 589999 99999999999999999999999653 2222110 00000 00
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
++. .......++..+++.+ +++++|+||.|++... ..++++++.+.++++++|++.+
T Consensus 51 -------------------~~~-~~~~~~~~~~~~~~~~-~~~~~D~vil~vk~~~--~~~~~~~l~~~~~~~~iii~~~ 107 (341)
T PRK08229 51 -------------------RGR-DVRVPPSAIAFSTDPA-ALATADLVLVTVKSAA--TADAAAALAGHARPGAVVVSFQ 107 (341)
T ss_pred -------------------CCc-ceecccceeEeccChh-hccCCCEEEEEecCcc--hHHHHHHHHhhCCCCCEEEEeC
Confidence 000 0000112345566664 6799999999998765 4678888999889999888777
Q ss_pred CCCCH-HHHHhhcCCCCceeeeeecC----CCCC-----CCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc-
Q psy13746 172 SSFLP-SVLSEHSTHRSQFIVAHPVN----PPYF-----IPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG- 240 (294)
Q Consensus 172 St~~~-~~ia~~l~~~~~~ig~h~~~----p~~~-----~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g- 240 (294)
.++.. +.++..+.....+.|.+++. ++.. ...+.+ +. .+.++.+.++|+..|.++.+.+ |..+
T Consensus 108 nG~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~--~~---~~~~~~~~~~l~~~g~~~~~~~-di~~~ 181 (341)
T PRK08229 108 NGVRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAI--EA---SPALRPFAAAFARAGLPLVTHE-DMRAV 181 (341)
T ss_pred CCCCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEe--cC---CchHHHHHHHHHhcCCCceecc-hhHHH
Confidence 77653 45666654322233334422 1110 111212 21 2446889999999998888874 4332
Q ss_pred ----cHHHH---HH--------------------HHHHHHHHHHHHcCCCCHHH
Q psy13746 241 ----FALNR---IQ--------------------FAVLNECYHLVHDGVLSAKD 267 (294)
Q Consensus 241 ----~v~nr---i~--------------------~a~~~Ea~~l~~~~~~~~~~ 267 (294)
++.|- +. ...+.|++.++++.|++++.
T Consensus 182 ~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~~ 235 (341)
T PRK08229 182 QWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPAR 235 (341)
T ss_pred HHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 34442 11 14578999999999988644
No 85
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=99.17 E-value=6.7e-12 Score=119.50 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=113.8
Q ss_pred ceEEE--ccccHHHHH--HH----HHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 15 PDGII--GLIGQAWAM--IF----ASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~--~~----~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
||+|| |.||.+++. .+ +..|++|.+||++++.++.....+.
T Consensus 2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~------------------------------- 50 (423)
T cd05297 2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAK------------------------------- 50 (423)
T ss_pred eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHH-------------------------------
Confidence 79999 999998766 33 4568899999999999877554332
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCC----------cchHHHHHHHHH
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVP----------EILQIKHQVYRA 156 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavp----------e~~~~k~~~~~~ 156 (294)
+.+. .. ....+++.++|+.+++++||+||++++ +++.+|..++++
T Consensus 51 ------------~~~~----~~---------~~~~~I~~ttD~~eal~~AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~ 105 (423)
T cd05297 51 ------------KIVE----EL---------GAPLKIEATTDRREALDGADFVINTIQVGGHEYTETDFEIPEKYGYYQT 105 (423)
T ss_pred ------------HHHH----hc---------CCCeEEEEeCCHHHHhcCCCEEEEeeEecCccchhhhhhhHHHcCeeee
Confidence 1111 10 011357788999889999999999999 357888899999
Q ss_pred HhcccCCCeEEEecCCCCCHHHHHhhcCC--CCceeeeeecCCCCCC-----Ce--EEEecCCCCCHHHHHHHHHHHHHc
Q psy13746 157 IDIFMSSNTILSSSTSSFLPSVLSEHSTH--RSQFIVAHPVNPPYFI-----PL--VEIVPAAWTSERVITRTREIMTEI 227 (294)
Q Consensus 157 l~~~~~~~~ii~s~tSt~~~~~ia~~l~~--~~~~ig~h~~~p~~~~-----~l--veiv~g~~t~~e~~~~~~~ll~~l 227 (294)
+.+.+++++++.+++|...+.+++..+.. | +.+.+||.||+... +. ..+++.... .+.....+.+.+
T Consensus 106 ~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p-~a~~i~~tNPv~i~t~~~~k~~~~rviG~c~~---~~~~~~~~a~~l 181 (423)
T cd05297 106 VGDTSGPGGIFRALRTIPVLLDIARDIEELCP-DAWLLNYANPMAELTWALNRYTPIKTVGLCHG---VQGTAEQLAKLL 181 (423)
T ss_pred ccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCC-CCEEEEcCChHHHHHHHHHHhCCCCEEEECCc---HHHHHHHHHHHh
Confidence 99999999999999988888888877753 6 89999999997421 11 234443222 445566677778
Q ss_pred CCe
Q psy13746 228 GMK 230 (294)
Q Consensus 228 G~~ 230 (294)
|..
T Consensus 182 ~~~ 184 (423)
T cd05297 182 GEP 184 (423)
T ss_pred CCC
Confidence 863
No 86
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.15 E-value=3.4e-09 Score=92.30 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=103.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||+++|..|+++|++|++|++++++++...+...+
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~---------------------------------- 46 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALE---------------------------------- 46 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHh----------------------------------
Confidence 379999 6899999999999999999999999887654432110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.+ ...|. + .++.. .+..++++++|+||.|+|... -.++++++...++. ++|++.
T Consensus 47 ---------~~---~~~g~-~---------~~~~~-~~~~ea~~~aDvVilavp~~~--~~~~l~~l~~~l~~-~vvI~~ 100 (219)
T TIGR01915 47 ---------EL---GHGGS-D---------IKVTG-ADNAEAAKRADVVILAVPWDH--VLKTLESLRDELSG-KLVISP 100 (219)
T ss_pred ---------hc---cccCC-C---------ceEEE-eChHHHHhcCCEEEEECCHHH--HHHHHHHHHHhccC-CEEEEe
Confidence 00 00010 0 01222 244567899999999999764 34666777666654 677766
Q ss_pred CCCCCH-----------------HHHHhhcCCCCceeeeeecCCCC-------CCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy13746 171 TSSFLP-----------------SVLSEHSTHRSQFIVAHPVNPPY-------FIPLVEIVPAAWTSERVITRTREIMTE 226 (294)
Q Consensus 171 tSt~~~-----------------~~ia~~l~~~~~~ig~h~~~p~~-------~~~lveiv~g~~t~~e~~~~~~~ll~~ 226 (294)
+-++.. +.+++.++...+++...+..+.. ..+.-.++.|+ +++..+.+..+.+.
T Consensus 101 ~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~~~~VVka~~~~~a~~~~~~~~~~~~~~~v~Gd--d~~ak~~v~~L~~~ 178 (219)
T TIGR01915 101 VVPLASDGGKGARYLPPEEGSAAEQAAALLPETSRVVAAFHNLSAVLLQDVDDEVDCDVLVCGD--DEEAKEVVAELAGR 178 (219)
T ss_pred ccCceecCCCCceecCCCCCcHHHHHHHhCCCCCeEeeccccCCHHHhcCCCCCCCCCEEEECC--CHHHHHHHHHHHHh
Confidence 655554 33555554325666654433321 11222345553 67788999999999
Q ss_pred c-CCeeEEEcc
Q psy13746 227 I-GMKPVTLTT 236 (294)
Q Consensus 227 l-G~~~v~v~~ 236 (294)
+ |..|+.+++
T Consensus 179 ~~G~~~vd~G~ 189 (219)
T TIGR01915 179 IDGLRALDAGP 189 (219)
T ss_pred cCCCCcccCCc
Confidence 9 999988753
No 87
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=3.8e-09 Score=96.88 Aligned_cols=197 Identities=20% Similarity=0.209 Sum_probs=135.3
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
....|++| |+||+.+|.+.+++||+|.+|+|+.++.++..+...
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~---------------------------------- 47 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERA---------------------------------- 47 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCc----------------------------------
Confidence 34679999 999999999999999999999999999876543211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChh---hhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLR---ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~---~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
+| .+|.++.+++ ..++.-.-|+.++.--. ....++++|.+++.++-|
T Consensus 48 -----------------~~------------k~i~~~~sieefV~~Le~PRkI~lMVkAG~-~VD~~I~~L~p~Le~gDI 97 (473)
T COG0362 48 -----------------KG------------KNIVPAYSIEEFVASLEKPRKILLMVKAGT-PVDAVIEQLLPLLEKGDI 97 (473)
T ss_pred -----------------cC------------CCccccCcHHHHHHHhcCCceEEEEEecCC-cHHHHHHHHHhhcCCCCE
Confidence 00 1233333333 34566777777765431 235788999999999999
Q ss_pred EEecCCCCCHHHHHh---hcCCCCceeeeeecCCCCCC-CeEEEecCCCCCHHHHHHHHHHHHHcCCe------eEEEcc
Q psy13746 167 LSSSTSSFLPSVLSE---HSTHRSQFIVAHPVNPPYFI-PLVEIVPAAWTSERVITRTREIMTEIGMK------PVTLTT 236 (294)
Q Consensus 167 i~s~tSt~~~~~ia~---~l~~~~~~ig~h~~~p~~~~-~lveiv~g~~t~~e~~~~~~~ll~~lG~~------~v~v~~ 236 (294)
|++..-+...+.+.+ .......|+|+..-...... .-..|||| ++++..+.+.++|+.+..+ ..++++
T Consensus 98 iIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpG--G~~eay~~v~pil~~IaAk~~g~pCc~~iG~ 175 (473)
T COG0362 98 IIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPG--GQKEAYELVAPILTKIAAKVDGEPCCTWIGP 175 (473)
T ss_pred EEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCC--CCHHHHHHHHHHHHHHHhhcCCCCceeeECC
Confidence 998776655454432 22244567776543221100 12237888 7999999999999998753 356776
Q ss_pred ccccc----HHHHHH---HHHHHHHHHHHHc-CCCCHHHHHHHHHc
Q psy13746 237 EIRGF----ALNRIQ---FAVLNECYHLVHD-GVLSAKDIDRVMSE 274 (294)
Q Consensus 237 ~~~g~----v~nri~---~a~~~Ea~~l~~~-~~~~~~~id~a~~~ 274 (294)
++.|. |-|-+= +.++.|++.+++. .+.+.++|..+...
T Consensus 176 ~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~ 221 (473)
T COG0362 176 DGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEE 221 (473)
T ss_pred CCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 77774 334433 3589999999999 58899999888764
No 88
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.11 E-value=7.3e-09 Score=94.82 Aligned_cols=146 Identities=16% Similarity=0.156 Sum_probs=108.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCCh-HHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLS-EQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.||.++|..|...|++|+++++.. +..+++.+
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~-------------------------------------- 45 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATE-------------------------------------- 45 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHH--------------------------------------
Confidence 689999 9999999999999999988766543 33332211
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| +... +..+++++||+|+.++|+... ...+++++.+.++++.+| +.
T Consensus 46 ----------------~G--------------v~~~-s~~ea~~~ADiVvLaVpp~~~-~~~v~~ei~~~l~~g~iV-s~ 92 (314)
T TIGR00465 46 ----------------DG--------------FKVG-TVEEAIPQADLIMNLLPDEVQ-HEVYEAEIQPLLKEGKTL-GF 92 (314)
T ss_pred ----------------CC--------------CEEC-CHHHHHhcCCEEEEeCCcHhH-HHHHHHHHHhhCCCCcEE-EE
Confidence 12 2223 466778999999999998633 446667788888888755 56
Q ss_pred CCCCCHHHHHhhcCCCCceeeeeecCCCCC-------CCeE-EEe-cCCCCCHHHHHHHHHHHHHcCCe
Q psy13746 171 TSSFLPSVLSEHSTHRSQFIVAHPVNPPYF-------IPLV-EIV-PAAWTSERVITRTREIMTEIGMK 230 (294)
Q Consensus 171 tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~-------~~lv-eiv-~g~~t~~e~~~~~~~ll~~lG~~ 230 (294)
..++++..+...++...+++...|..|... +.-+ -++ .+...+.+..+.+..+++.+|..
T Consensus 93 aaG~~i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~ 161 (314)
T TIGR00465 93 SHGFNIHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGG 161 (314)
T ss_pred eCCccHhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence 788888887776655557888999998863 4433 343 66667888899999999999987
No 89
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.9e-08 Score=86.75 Aligned_cols=189 Identities=18% Similarity=0.209 Sum_probs=131.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+.| |.||..|...+.+.||+|.+||+|++..+++...
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~-------------------------------------- 42 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDE-------------------------------------- 42 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhc--------------------------------------
Confidence 468889 9999999999999999999999999998876431
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccC---hhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPV---LRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~---~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
| . +..++ +-..+.....|..++|-- ++...+++++.+.+.++.+|+
T Consensus 43 ----------------g-a-------------~~a~sl~el~~~L~~pr~vWlMvPag-~it~~vi~~la~~L~~GDivI 91 (300)
T COG1023 43 ----------------G-A-------------TGAASLDELVAKLSAPRIVWLMVPAG-DITDAVIDDLAPLLSAGDIVI 91 (300)
T ss_pred ----------------C-C-------------ccccCHHHHHHhcCCCcEEEEEccCC-CchHHHHHHHHhhcCCCCEEE
Confidence 2 1 11122 222355667888888874 246789999999999999988
Q ss_pred ecCCCCCHHHHHhhcCCCCceeeeeecCC-----CCC--CCeEEEecCCCCCHHHHHHHHHHHHHcCC---eeEEEcccc
Q psy13746 169 SSTSSFLPSVLSEHSTHRSQFIVAHPVNP-----PYF--IPLVEIVPAAWTSERVITRTREIMTEIGM---KPVTLTTEI 238 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~~~~~~ig~h~~~p-----~~~--~~lveiv~g~~t~~e~~~~~~~ll~~lG~---~~v~v~~~~ 238 (294)
+..-+..-+.+.+.-. -.-.|.||++- ++. .....++.| +++.++++.++|+.+.- --.++++.+
T Consensus 92 DGGNS~y~Ds~rr~~~--l~~kgi~flD~GTSGG~~G~~~G~~lMiGG---~~~a~~~~~pif~~lA~ge~Gyl~~Gp~G 166 (300)
T COG1023 92 DGGNSNYKDSLRRAKL--LAEKGIHFLDVGTSGGVWGAERGYCLMIGG---DEEAVERLEPIFKALAPGEDGYLYCGPSG 166 (300)
T ss_pred ECCccchHHHHHHHHH--HHhcCCeEEeccCCCCchhhhcCceEEecC---cHHHHHHHHHHHHhhCcCcCccccccCCC
Confidence 7765554443332111 11247787762 111 123445555 88999999999999875 345676666
Q ss_pred ccc----HHHHH---HHHHHHHHHHHHHcC--CCCHHHHHHHHHccc
Q psy13746 239 RGF----ALNRI---QFAVLNECYHLVHDG--VLSAKDIDRVMSEGL 276 (294)
Q Consensus 239 ~g~----v~nri---~~a~~~Ea~~l~~~~--~~~~~~id~a~~~g~ 276 (294)
.|. |-|-+ +.+.+.|.+.++++. ..|.+++.+.++.|.
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGS 213 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGS 213 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcc
Confidence 664 33433 345688999999988 456888999888763
No 90
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.00 E-value=9.1e-09 Score=87.93 Aligned_cols=98 Identities=15% Similarity=0.175 Sum_probs=69.3
Q ss_pred cCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCC-----CeEEEec
Q psy13746 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFI-----PLVEIVP 208 (294)
Q Consensus 134 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~-----~lveiv~ 208 (294)
++||+||.|+|.+.. .++++++. .+|++.+|+.. .+.+. ..+|+|.|||..|... +.+.++
T Consensus 30 ~~~DlVilavPv~~~--~~~i~~~~------~~v~Dv~SvK~--~i~~~---~~~~vg~HPMfGp~~a~~~lf~~~iv~- 95 (197)
T PRK06444 30 KKADHAFLSVPIDAA--LNYIESYD------NNFVEISSVKW--PFKKY---SGKIVSIHPLFGPMSYNDGVHRTVIFI- 95 (197)
T ss_pred CCCCEEEEeCCHHHH--HHHHHHhC------CeEEeccccCH--HHHHh---cCCEEecCCCCCCCcCcccccceEEEE-
Confidence 367999999998753 46666654 26778777654 23332 3479999999975332 333343
Q ss_pred CCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHH
Q psy13746 209 AAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 209 g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~ 247 (294)
.+.++++.++.++.+++ |.+++.+.++.+..+...+.
T Consensus 96 ~~~~~~~~~~~~~~l~~--G~~~~~~t~eeHD~~~A~is 132 (197)
T PRK06444 96 NDISRDNYLNEINEMFR--GYHFVEMTADEHDLLMSEIM 132 (197)
T ss_pred CCCCCHHHHHHHHHHHc--CCEEEEeCHHHHHHHHHHHH
Confidence 56688888999999998 89999998888876655554
No 91
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=98.98 E-value=3.4e-09 Score=84.19 Aligned_cols=113 Identities=27% Similarity=0.278 Sum_probs=70.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEE-EeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~-~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.-.||+|| |.+|..++..|.++||+|.. |.|+++..+++...+.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~--------------------------------- 55 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIG--------------------------------- 55 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--T---------------------------------
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccc---------------------------------
Confidence 33699999 99999999999999999875 5777766665543321
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcc--cCCCeE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIF--MSSNTI 166 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~--~~~~~i 166 (294)
+ ....++.+.+.++|++|.++|++. ..++.++|... ..++++
T Consensus 56 -----------------------~-----------~~~~~~~~~~~~aDlv~iavpDda--I~~va~~La~~~~~~~g~i 99 (127)
T PF10727_consen 56 -----------------------A-----------GAILDLEEILRDADLVFIAVPDDA--IAEVAEQLAQYGAWRPGQI 99 (127)
T ss_dssp -----------------------T----------------TTGGGCC-SEEEE-S-CCH--HHHHHHHHHCC--S-TT-E
T ss_pred -----------------------c-----------ccccccccccccCCEEEEEechHH--HHHHHHHHHHhccCCCCcE
Confidence 0 123456677899999999999985 56888999887 778888
Q ss_pred EEecCCC-CCHHHHHhhcCCCCceeeeee
Q psy13746 167 LSSSTSS-FLPSVLSEHSTHRSQFIVAHP 194 (294)
Q Consensus 167 i~s~tSt-~~~~~ia~~l~~~~~~ig~h~ 194 (294)
|+ .+|+ .+.+-++...........+||
T Consensus 100 Vv-HtSGa~~~~vL~p~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 100 VV-HTSGALGSDVLAPARERGAIVASLHP 127 (127)
T ss_dssp EE-ES-SS--GGGGHHHHHTT-EEEEEEE
T ss_pred EE-ECCCCChHHhhhhHHHCCCeEEEeCc
Confidence 87 4554 454444444334445556675
No 92
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.96 E-value=4.9e-08 Score=90.64 Aligned_cols=169 Identities=13% Similarity=0.056 Sum_probs=107.6
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
..+||+|| |.||..+|..|+++| +|++|.++++..+...+...+ ..|+.+
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~--~~~l~~------------------------- 57 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRN--SRYLGN------------------------- 57 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCC--cccCCC-------------------------
Confidence 34789999 999999999999999 789999999887765432110 111000
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+ .....++..++|+.++++++|+||.|+|... -+++++++.+++++++++++
T Consensus 58 ------------------~--------~~l~~~i~~t~d~~~a~~~aDlVilavps~~--~~~vl~~i~~~l~~~~~vIs 109 (341)
T PRK12439 58 ------------------D--------VVLSDTLRATTDFAEAANCADVVVMGVPSHG--FRGVLTELAKELRPWVPVVS 109 (341)
T ss_pred ------------------C--------cccCCCeEEECCHHHHHhcCCEEEEEeCHHH--HHHHHHHHHhhcCCCCEEEE
Confidence 0 0111346678888888999999999999653 56888999999988877766
Q ss_pred cCCCCCH-------HHHHhhcCCCCcee-eeeecCCCC--CCCe-EEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 170 STSSFLP-------SVLSEHSTHRSQFI-VAHPVNPPY--FIPL-VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 170 ~tSt~~~-------~~ia~~l~~~~~~i-g~h~~~p~~--~~~l-veiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
.+.++.. +.+.+.++. .++. -..|-.+.. .+.. ..++.+ .+++..+.++.+|..-+.++... .|.
T Consensus 110 l~kGi~~~t~~~~se~i~~~l~~-~~~~~l~GP~~a~ev~~g~~t~~via~--~~~~~~~~v~~lf~~~~~~v~~s-~Di 185 (341)
T PRK12439 110 LVKGLEQGTNMRMSQIIEEVLPG-HPAGILAGPNIAREVAEGYAAAAVLAM--PDQHLATRLSPLFRTRRFRVYTT-DDV 185 (341)
T ss_pred EEeCCcCCCCCcHHHHHHHHcCC-CCeEEEECCCHHHHHHcCCCeEEEEEe--CCHHHHHHHHHHhCCCCEEEEEc-Cch
Confidence 6666654 244444431 1211 111211111 1222 223333 36777888888888888777665 465
Q ss_pred cc
Q psy13746 239 RG 240 (294)
Q Consensus 239 ~g 240 (294)
.|
T Consensus 186 ~g 187 (341)
T PRK12439 186 VG 187 (341)
T ss_pred HH
Confidence 54
No 93
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=98.96 E-value=2.6e-09 Score=80.53 Aligned_cols=88 Identities=19% Similarity=0.180 Sum_probs=67.5
Q ss_pred ceEEE--ccccHHHHHHHHHCC---CeEEEE-eCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 15 PDGII--GLIGQAWAMIFASAG---YKVSLY-DVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G---~~V~~~-d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
||+|| |.||.+|+..|.+.| ++|+++ ++++++.++..+...
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~--------------------------------- 47 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYG--------------------------------- 47 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCT---------------------------------
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhc---------------------------------
Confidence 68999 999999999999999 999955 999999887654311
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeecc-ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTP-VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~-~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
..... +..++++.+|+||.|+|... -.+++.++ ....++.++
T Consensus 48 ----------------------------------~~~~~~~~~~~~~~advvilav~p~~--~~~v~~~i-~~~~~~~~v 90 (96)
T PF03807_consen 48 ----------------------------------VQATADDNEEAAQEADVVILAVKPQQ--LPEVLSEI-PHLLKGKLV 90 (96)
T ss_dssp ----------------------------------TEEESEEHHHHHHHTSEEEE-S-GGG--HHHHHHHH-HHHHTTSEE
T ss_pred ----------------------------------cccccCChHHhhccCCEEEEEECHHH--HHHHHHHH-hhccCCCEE
Confidence 12233 67788999999999999865 45788888 666778888
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
+|.+.
T Consensus 91 is~~a 95 (96)
T PF03807_consen 91 ISIAA 95 (96)
T ss_dssp EEEST
T ss_pred EEeCC
Confidence 77553
No 94
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.94 E-value=4.5e-08 Score=91.32 Aligned_cols=170 Identities=13% Similarity=0.050 Sum_probs=105.4
Q ss_pred ccceEEE--ccccHHHHHHHHHCC-------CeEEEEeCChHH-HHHHHHHHHhhhh--hhhhcccccCCCCCccCCcee
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG-------YKVSLYDVLSEQ-IENAKNTIQHTLQ--DYHQKGCLKGSLSPAHAGYKV 80 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G-------~~V~~~d~~~~~-~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~v 80 (294)
.++|+|| |.||+++|..++++| ++|.+|.++++. -+...+.|++.+. .|++.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~---------------- 74 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPG---------------- 74 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCC----------------
Confidence 4689999 999999999999997 899999999862 1122233332221 12111
Q ss_pred EEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhc-
Q psy13746 81 SLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDI- 159 (294)
Q Consensus 81 ~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~- 159 (294)
.....++..++|+.++++++|+||.++|... -+++++++.+
T Consensus 75 ------------------------------------~~Lp~ni~~tsdl~eav~~aDiIvlAVPsq~--l~~vl~~l~~~ 116 (365)
T PTZ00345 75 ------------------------------------IKLPDNIVAVSDLKEAVEDADLLIFVIPHQF--LESVLSQIKEN 116 (365)
T ss_pred ------------------------------------CcCCCceEEecCHHHHHhcCCEEEEEcChHH--HHHHHHHhccc
Confidence 1234568888999989999999999999764 6788999988
Q ss_pred -ccCCCeEEEecCCCCCHH--------H-HHhhcCCCCceeeeeecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHH
Q psy13746 160 -FMSSNTILSSSTSSFLPS--------V-LSEHSTHRSQFIVAHPVNPP---YFIPLVEIVPAAWTSERVITRTREIMTE 226 (294)
Q Consensus 160 -~~~~~~ii~s~tSt~~~~--------~-ia~~l~~~~~~ig~h~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~ 226 (294)
.++++.++++.+.++.++ + +.+.+..+.-++. .|..+. ...+...++.+ .+++..+.++.+|..
T Consensus 117 ~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~Ls-GPs~A~Eva~~~pt~~vias--~~~~~a~~~~~lf~~ 193 (365)
T PTZ00345 117 NNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALS-GANVANDVAREEFSEATIGC--EDKDDALIWQRLFDR 193 (365)
T ss_pred cccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEE-CCCHHHHHHcCCCcEEEEEe--CCHHHHHHHHHHhCC
Confidence 777777777666665432 2 2223322111111 111111 11223334444 478888888888876
Q ss_pred cCCeeEEEcccccc
Q psy13746 227 IGMKPVTLTTEIRG 240 (294)
Q Consensus 227 lG~~~v~v~~~~~g 240 (294)
=-.+++.. .|..|
T Consensus 194 ~~frvy~s-~Dv~G 206 (365)
T PTZ00345 194 PYFKINCV-PDVIG 206 (365)
T ss_pred CcEEEEEc-CCccc
Confidence 55555544 45544
No 95
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.93 E-value=5.3e-08 Score=86.29 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=84.1
Q ss_pred eeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCe
Q psy13746 124 SGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL 203 (294)
Q Consensus 124 ~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~l 203 (294)
..+.+..+.+.++|+||.|++++. -.+++.++...+.++.+|+|.+.+++++.+.+.+.+..+.+...|..|...+..
T Consensus 32 ~~~~~~~e~~~~aDiIiLaVkP~~--i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~~~~~~~~~ivR~mPn~~~~~~~g 109 (245)
T TIGR00112 32 VASSDAQEAVKEADVVFLAVKPQD--LEEVLSELKSEKGKDKLLISIAAGVTLEKLSQLLGGTRRVVRVMPNTPAKVGAG 109 (245)
T ss_pred EEeCChHHHHhhCCEEEEEeCHHH--HHHHHHHHhhhccCCCEEEEecCCCCHHHHHHHcCCCCeEEEECCChHHHHhCC
Confidence 345667677789999999999432 457788888767777888899999999999888865456888888777665543
Q ss_pred -EEEecCCCCCHHHHHHHHHHHHHcCCeeEEEc
Q psy13746 204 -VEIVPAAWTSERVITRTREIMTEIGMKPVTLT 235 (294)
Q Consensus 204 -veiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~ 235 (294)
.-+..++..+++..+.++.+|+.+|... ++.
T Consensus 110 ~t~~~~~~~~~~~~~~~v~~lf~~~G~~~-~v~ 141 (245)
T TIGR00112 110 VTAIAANANVSEEDRALVLALFKAVGEVV-ELP 141 (245)
T ss_pred eEEEecCCCCCHHHHHHHHHHHHhCCCEE-EEC
Confidence 3456677788889999999999999654 553
No 96
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.90 E-value=9.9e-08 Score=88.36 Aligned_cols=162 Identities=14% Similarity=0.090 Sum_probs=102.1
Q ss_pred ceEEE--ccccHHHHHHHHHCC--------CeEEEEeCC-----hHHHHHHHHHHHhhhh--hhhhcccccCCCCCccCC
Q psy13746 15 PDGII--GLIGQAWAMIFASAG--------YKVSLYDVL-----SEQIENAKNTIQHTLQ--DYHQKGCLKGSLSPAHAG 77 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G--------~~V~~~d~~-----~~~~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~ 77 (294)
||+|| |.||.++|..++.+| ++|++|.++ ++..+ .|++.++ .|++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~----~in~~~~n~~ylp-------------- 62 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTE----IINTTHENVKYLP-------------- 62 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHH----HHHhcCCCccccC--------------
Confidence 68999 999999999999999 999999994 33322 2322111 1110
Q ss_pred ceeEEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHH
Q psy13746 78 YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAI 157 (294)
Q Consensus 78 ~~v~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l 157 (294)
| .....+++.++|+++++++||+||.++|... -+++++++
T Consensus 63 ------------------------------g--------i~Lp~~i~at~dl~eal~~ADiIIlAVPs~~--i~~vl~~l 102 (342)
T TIGR03376 63 ------------------------------G--------IKLPANLVAVPDLVEAAKGADILVFVIPHQF--LEGICKQL 102 (342)
T ss_pred ------------------------------C--------CcCCCCeEEECCHHHHHhcCCEEEEECChHH--HHHHHHHH
Confidence 0 1123457888999999999999999999765 56888999
Q ss_pred hcccCCCeEEEecCCCCCHH--H-------HHhhcCCCCceeeeeecCCCC------CCC-eEEEecCCCCC--HHHHHH
Q psy13746 158 DIFMSSNTILSSSTSSFLPS--V-------LSEHSTHRSQFIVAHPVNPPY------FIP-LVEIVPAAWTS--ERVITR 219 (294)
Q Consensus 158 ~~~~~~~~ii~s~tSt~~~~--~-------ia~~l~~~~~~ig~h~~~p~~------~~~-lveiv~g~~t~--~e~~~~ 219 (294)
.++++++.++++.+.++.++ . +.+.+..+ + -.+..|. .+. ....+.+...+ .+..+.
T Consensus 103 ~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~--~---~~lsGP~~A~Eva~~~pt~~~ia~~~~~~~~~~a~~ 177 (342)
T TIGR03376 103 KGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIP--C---GVLSGANLANEVAKEKFSETTVGYRDPADFDVDARV 177 (342)
T ss_pred HhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCC--e---EEeeCcchHHHHHcCCCceEEEEeCCCcchHHHHHH
Confidence 99998888888777776544 1 22233211 1 1122221 122 23344442111 777888
Q ss_pred HHHHHHHcCCeeEEEcccccc
Q psy13746 220 TREIMTEIGMKPVTLTTEIRG 240 (294)
Q Consensus 220 ~~~ll~~lG~~~v~v~~~~~g 240 (294)
++.+|..=-.+++.. .|..|
T Consensus 178 ~~~lf~~~~frv~~s-~Dv~G 197 (342)
T TIGR03376 178 LKALFHRPYFRVNVV-DDVAG 197 (342)
T ss_pred HHHHhCCCCEEEEEc-CCccc
Confidence 888887544454443 45554
No 97
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.86 E-value=2.3e-07 Score=80.75 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=108.2
Q ss_pred ccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHHHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQHTL 101 (294)
Q Consensus 22 mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~l 101 (294)
=|++||..|+.+||+|.+.|.|.+..+. ..|
T Consensus 32 GGa~mAiefAeAGHDVVLaePn~d~~dd-------------------------------------------------~~w 62 (340)
T COG4007 32 GGARMAIEFAEAGHDVVLAEPNRDIMDD-------------------------------------------------EHW 62 (340)
T ss_pred CchHHHHHHHHcCCcEEeecCCccccCH-------------------------------------------------HHH
Confidence 4899999999999999999999876553 224
Q ss_pred HHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHH---
Q psy13746 102 QDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV--- 178 (294)
Q Consensus 102 ~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~--- 178 (294)
++..+.| .+.++|-.++++.+.+.+.-.|=-. ..-.+.++|.++++++++|+ ||.|.++-.
T Consensus 63 ~~vedAG--------------V~vv~dD~eaa~~~Ei~VLFTPFGk-~T~~Iarei~~hvpEgAVic-nTCT~sp~vLy~ 126 (340)
T COG4007 63 KRVEDAG--------------VEVVSDDAEAAEHGEIHVLFTPFGK-ATFGIAREILEHVPEGAVIC-NTCTVSPVVLYY 126 (340)
T ss_pred HHHHhcC--------------cEEecCchhhhhcceEEEEecccch-hhHHHHHHHHhhCcCCcEec-ccccCchhHHHH
Confidence 4444444 3556666668999999999887652 12356788999999999987 676666553
Q ss_pred -HHhhcCCCCceeeeeecCCCCC----CCeEEEecCCC------CCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 179 -LSEHSTHRSQFIVAHPVNPPYF----IPLVEIVPAAW------TSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 179 -ia~~l~~~~~~ig~h~~~p~~~----~~lveiv~g~~------t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
++..+..+.+-+|..+|.|... ..-.-++.|.. .+++.++++.++.+.+|+.+++++.|
T Consensus 127 ~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~yviagr~t~g~elATeEQi~r~velaes~Gk~~yv~pad 196 (340)
T COG4007 127 SLEGELRTKREDVGVSSMHPAGVPGTPQHGHYVIAGRSTEGKELATEEQIERCVELAESTGKEVYVLPAD 196 (340)
T ss_pred HhhhhhcCchhhcCccccCCCCCCCCCCCceEEEeccCCCceeeccHHHHHHHHHHHHhcCCceEecCHH
Confidence 3445555656788888877532 12233444433 35788999999999999999998644
No 98
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.85 E-value=1.1e-08 Score=93.95 Aligned_cols=123 Identities=17% Similarity=0.209 Sum_probs=86.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||.++|..++..|+ +|.++|++++.+. ++ ...
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~-~~-~ld----------------------------------- 49 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQ-GK-ALD----------------------------------- 49 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhh-HH-HHH-----------------------------------
Confidence 689999 9999999999999995 9999999998743 21 111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC-------------------CcchHHHH
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV-------------------PEILQIKH 151 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav-------------------pe~~~~k~ 151 (294)
..... .......+++.++|++ ++++||+||++. +++..+++
T Consensus 50 ------------~~~~~-------~~~~~~~~I~~~~d~~-~l~~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~ 109 (321)
T PTZ00082 50 ------------ISHSN-------VIAGSNSKVIGTNNYE-DIAGSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMD 109 (321)
T ss_pred ------------HHhhh-------hccCCCeEEEECCCHH-HhCCCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHH
Confidence 00000 0001113466678886 689999999955 55777888
Q ss_pred HHHHHHhcccCCC-eEEEecCCCCCHHHHHhhcCCC-Cceeeee
Q psy13746 152 QVYRAIDIFMSSN-TILSSSTSSFLPSVLSEHSTHR-SQFIVAH 193 (294)
Q Consensus 152 ~~~~~l~~~~~~~-~ii~s~tSt~~~~~ia~~l~~~-~~~ig~h 193 (294)
++.+++.+++++. .|+++|.+.+....+......| .|++|++
T Consensus 110 ~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg 153 (321)
T PTZ00082 110 EVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA 153 (321)
T ss_pred HHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence 9999999998764 4566777766555565555544 7888866
No 99
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.82 E-value=3e-07 Score=84.72 Aligned_cols=104 Identities=20% Similarity=0.235 Sum_probs=73.0
Q ss_pred ceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
+|+|| |.||..+|..|+++|++|++|+|+++.++...+...+ ..|
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~--~~~------------------------------- 48 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKN--LKY------------------------------- 48 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCC--ccc-------------------------------
Confidence 69999 9999999999999999999999998776654332100 000
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhc-cCCcEEEEcCCcchHHHHHHHHHHhc-ccCCCeEEEec
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL-EDAIFIQESVPEILQIKHQVYRAIDI-FMSSNTILSSS 170 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~-~~aDlVieavpe~~~~k~~~~~~l~~-~~~~~~ii~s~ 170 (294)
.++ ......++.++++.+++ .++|+||.|+|... -.++++++.+ ++++++.+++.
T Consensus 49 -----------------~~~----~~~~~~i~~~~~~~~~~~~~~Dliiiavks~~--~~~~l~~l~~~~l~~~~~vv~~ 105 (326)
T PRK14620 49 -----------------LPT----CHLPDNISVKSAIDEVLSDNATCIILAVPTQQ--LRTICQQLQDCHLKKNTPILIC 105 (326)
T ss_pred -----------------CCC----CcCCCCeEEeCCHHHHHhCCCCEEEEEeCHHH--HHHHHHHHHHhcCCCCCEEEEE
Confidence 000 00112355677887766 58999999999764 4578888887 77877755555
Q ss_pred CCCC
Q psy13746 171 TSSF 174 (294)
Q Consensus 171 tSt~ 174 (294)
+.++
T Consensus 106 ~nGi 109 (326)
T PRK14620 106 SKGI 109 (326)
T ss_pred EcCe
Confidence 6665
No 100
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=98.81 E-value=2.2e-07 Score=79.29 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=99.3
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
+++++|+ |.||.++|..|+++||+|++-.++.+ +++.+.+.+.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~---------------------------------- 46 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALG---------------------------------- 46 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhc----------------------------------
Confidence 3688899 99999999999999999999965544 4444333211
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.+++. .+..+|++.+|+||.++|-.. ...+++++...+. +.|+++
T Consensus 47 -------------------------------~~i~~-~~~~dA~~~aDVVvLAVP~~a--~~~v~~~l~~~~~-~KIvID 91 (211)
T COG2085 47 -------------------------------PLITG-GSNEDAAALADVVVLAVPFEA--IPDVLAELRDALG-GKIVID 91 (211)
T ss_pred -------------------------------ccccc-CChHHHHhcCCEEEEeccHHH--HHhHHHHHHHHhC-CeEEEe
Confidence 01222 345568999999999999654 5578888887766 777775
Q ss_pred cCCCCC----------------HH-HHHhhcCCCCceee-eee-----cC-CCCC-CCeEEEecCCCCCHHHHHHHHHHH
Q psy13746 170 STSSFL----------------PS-VLSEHSTHRSQFIV-AHP-----VN-PPYF-IPLVEIVPAAWTSERVITRTREIM 224 (294)
Q Consensus 170 ~tSt~~----------------~~-~ia~~l~~~~~~ig-~h~-----~~-p~~~-~~lveiv~g~~t~~e~~~~~~~ll 224 (294)
.|=.+. .+ .+++.++++ +++. .|- +. -+.. .+...++.| .|.++.+.+.++.
T Consensus 92 ~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a-kVVkAFn~i~a~~l~~~~~~~~~~~v~vag--DD~~Ak~~v~~L~ 168 (211)
T COG2085 92 ATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA-KVVKAFNTIPAAVLADLAKPGGRRDVLVAG--DDAEAKAVVAELA 168 (211)
T ss_pred cCCCccccCCccccccCCCCCcHHHHHHHHCCCc-chhhhhcccCHHHhccCCCcCCceeEEEec--CcHHHHHHHHHHH
Confidence 443211 11 233344332 2221 111 11 1112 445556666 4788999999999
Q ss_pred HHcCCeeEEEcc
Q psy13746 225 TEIGMKPVTLTT 236 (294)
Q Consensus 225 ~~lG~~~v~v~~ 236 (294)
+.+|..++.+++
T Consensus 169 ~~iG~~~ld~G~ 180 (211)
T COG2085 169 EDIGFRPLDAGP 180 (211)
T ss_pred HhcCcceeeccc
Confidence 999999999865
No 101
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.80 E-value=1.8e-08 Score=91.96 Aligned_cols=121 Identities=16% Similarity=0.161 Sum_probs=81.2
Q ss_pred eEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIEN 92 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 92 (294)
|+|| |.||..+|..++..|+ +|+++|++++.++ +... .
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~-g~~~-d------------------------------------- 41 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQ-GKAL-D------------------------------------- 41 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHH-HHHH-H-------------------------------------
Confidence 6889 9999999999998886 9999999987542 2211 0
Q ss_pred HHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--------------CcchHHHHHHHHHHh
Q psy13746 93 AKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--------------PEILQIKHQVYRAID 158 (294)
Q Consensus 93 ~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--------------pe~~~~k~~~~~~l~ 158 (294)
+...... .....+++.++|++ ++++||+||+++ +++..+++++++++.
T Consensus 42 --------l~~~~~~---------~~~~~~I~~t~d~~-~l~dADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~ 103 (300)
T cd01339 42 --------ISQAAPI---------LGSDTKVTGTNDYE-DIAGSDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIK 103 (300)
T ss_pred --------HHHhhhh---------cCCCeEEEEcCCHH-HhCCCCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 00113466667776 589999999966 678889999999999
Q ss_pred cccCCCeE-EEecCCCCCHHHHHhhcCC-CCceeeee
Q psy13746 159 IFMSSNTI-LSSSTSSFLPSVLSEHSTH-RSQFIVAH 193 (294)
Q Consensus 159 ~~~~~~~i-i~s~tSt~~~~~ia~~l~~-~~~~ig~h 193 (294)
+.++++.+ +++|.+.+....+.+.... |.|++|+-
T Consensus 104 ~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg 140 (300)
T cd01339 104 KYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA 140 (300)
T ss_pred HHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence 99877764 4466554444444444433 45777743
No 102
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.74 E-value=5.3e-08 Score=89.05 Aligned_cols=123 Identities=16% Similarity=0.144 Sum_probs=78.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++||+|| |.||..+|..++..|+ +|.++|++++.++.....+.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~---------------------------------- 47 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIA---------------------------------- 47 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHH----------------------------------
Confidence 3799999 9999999999999876 99999999887532111110
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--------------CcchHHHHHHHH
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--------------PEILQIKHQVYR 155 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--------------pe~~~~k~~~~~ 155 (294)
.... ......+++.++|++ ++++||+||+++ .++..+++++++
T Consensus 48 -------------~~~~---------~~~~~~~i~~~~d~~-~~~~aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~ 104 (307)
T PRK06223 48 -------------EAAP---------VEGFDTKITGTNDYE-DIAGSDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAE 104 (307)
T ss_pred -------------hhhh---------hcCCCcEEEeCCCHH-HHCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 0000 001113466677886 589999999986 356678889999
Q ss_pred HHhcccCCCeE-EEecCCCCCHHHHHhhcC-CCCceeee
Q psy13746 156 AIDIFMSSNTI-LSSSTSSFLPSVLSEHST-HRSQFIVA 192 (294)
Q Consensus 156 ~l~~~~~~~~i-i~s~tSt~~~~~ia~~l~-~~~~~ig~ 192 (294)
++.+.+++..+ +++|.+.+....+.+... .|.+++|.
T Consensus 105 ~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~ 143 (307)
T PRK06223 105 GIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGM 143 (307)
T ss_pred HHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEe
Confidence 99998866533 334433222112222222 23566664
No 103
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.73 E-value=6.8e-08 Score=88.84 Aligned_cols=123 Identities=19% Similarity=0.196 Sum_probs=84.5
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||.++|..++..| .++.++|++++.++ +.. ..
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~-g~~-lD----------------------------------- 48 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQ-GKA-LD----------------------------------- 48 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccch-hHH-HH-----------------------------------
Confidence 589999 999999999999988 69999999987754 221 11
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcC--Ccch------------HHHHHHHHH
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESV--PEIL------------QIKHQVYRA 156 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieav--pe~~------------~~k~~~~~~ 156 (294)
+. . .. .......+++.+++++ ++++||+||++. |... .+++++.++
T Consensus 49 ----------l~--~-~~------~~~~~~~~i~~~~d~~-~l~~ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~ 108 (319)
T PTZ00117 49 ----------LK--H-FS------TLVGSNINILGTNNYE-DIKDSDVVVITAGVQRKEEMTREDLLTINGKIMKSVAES 108 (319)
T ss_pred ----------Hh--h-hc------cccCCCeEEEeCCCHH-HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 0000112455667888 789999999998 6655 778889999
Q ss_pred HhcccCCC-eEEEecCCCCCHHHHHhhcCCC-Cceeeee
Q psy13746 157 IDIFMSSN-TILSSSTSSFLPSVLSEHSTHR-SQFIVAH 193 (294)
Q Consensus 157 l~~~~~~~-~ii~s~tSt~~~~~ia~~l~~~-~~~ig~h 193 (294)
+.+++++. .|+++|.+.+....+.+....| .+++|++
T Consensus 109 i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~g 147 (319)
T PTZ00117 109 VKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMA 147 (319)
T ss_pred HHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEec
Confidence 99998766 4555666655444454444444 7888766
No 104
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.69 E-value=2.9e-08 Score=100.67 Aligned_cols=76 Identities=21% Similarity=0.241 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCeeEEEcccccccHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 218 TRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGV-LSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 218 ~~~~~ll~~lG~~~v~v~~~~~g~v~nri~~a~~~Ea~~l~~~~~-~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
+.+..++..+++.+..+ .+.+|++.||++.+++||+++++++|. .+++|||.++..|+|||+...|||+++|.+|.
T Consensus 625 ~~v~~~~~~~~k~p~~~-~~~~g~I~~Rll~~~~nEA~rlLeEGV~a~~~DID~a~~~G~GfP~~~gGP~~~aD~~Gl 701 (737)
T TIGR02441 625 SDADEILAQYKLPPKAE-VSSPEDIQIRLVSRFVNEAVLCLEEGILASPSEGDIGAVFGLGFPPFLGGPFRFVDLYGA 701 (737)
T ss_pred HHHHHHHHHhccCcccc-cCChHHHHHHHHHHHHHHHHHHhhcCccCCHHHHHHHHHhCCCCCCccCCHHHHHHHhCH
Confidence 44556677788777655 578999999999999999999999999 79999999999999999777899999999883
No 105
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.66 E-value=1.1e-06 Score=79.85 Aligned_cols=199 Identities=10% Similarity=0.085 Sum_probs=114.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|+ |.||..+|..|+++|++|++|++ ++.++...+. |+.+.-.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~-----------------------g~~~~~~-------- 48 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER-----------------------GLVIRSD-------- 48 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC-----------------------CeEEEeC--------
Confidence 479999 99999999999999999999999 7666544321 1100000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.+ ...-.....++..++..++|+||.|++... -.++++++.+.++++++|++..
T Consensus 49 -------------------~~-----~~~~~~~~~~~~~~~~~~~d~vilavk~~~--~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 49 -------------------HG-----DAVVPGPVITDPEELTGPFDLVILAVKAYQ--LDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred -------------------CC-----eEEecceeecCHHHccCCCCEEEEEecccC--HHHHHHHHHhhcCCCCEEEEee
Confidence 00 000011224566655689999999999754 3567788888888887776544
Q ss_pred CCCC-HHHHHhhcCCCCceee-eee-----cCCCC---CC-CeEEEecC-CCCCHHHHHHHHHHHHHcCCeeEEEccccc
Q psy13746 172 SSFL-PSVLSEHSTHRSQFIV-AHP-----VNPPY---FI-PLVEIVPA-AWTSERVITRTREIMTEIGMKPVTLTTEIR 239 (294)
Q Consensus 172 St~~-~~~ia~~l~~~~~~ig-~h~-----~~p~~---~~-~lveiv~g-~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~ 239 (294)
-++. .+.+...++. .++++ ..+ ..|-. .+ ..+ .++. +....+..+.+..+|...|..+... .|..
T Consensus 103 nG~~~~~~l~~~~~~-~~v~~g~~~~~~~~~~~g~v~~~~~~~~-~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~-~di~ 179 (305)
T PRK12921 103 NGIGQLEQLEPYFGR-ERVLGGVVFISAQLNGDGVVVQRADHRL-TFGEIPGQRSERTRAVRDALAGARLEVVLS-ENIR 179 (305)
T ss_pred CCCChHHHHHHhCCc-ccEEEEEEEEEEEECCCeEEEEcCCCcE-EEcCCCCCcCHHHHHHHHHHHhCCCCceec-HHHH
Confidence 4554 3345555432 23332 222 22211 01 111 2221 1233456667778888888665544 3432
Q ss_pred c-----cHHH------------------------HHHHHHHHHHHHHHHcCCCC--HHHHHHHHH
Q psy13746 240 G-----FALN------------------------RIQFAVLNECYHLVHDGVLS--AKDIDRVMS 273 (294)
Q Consensus 240 g-----~v~n------------------------ri~~a~~~Ea~~l~~~~~~~--~~~id~a~~ 273 (294)
. ++.| +++..++.|..++++..|++ .+.++..+.
T Consensus 180 ~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 244 (305)
T PRK12921 180 QDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDVVEEIVK 244 (305)
T ss_pred HHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 1 2222 22334688999999998876 344555443
No 106
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.65 E-value=2.8e-07 Score=85.13 Aligned_cols=112 Identities=21% Similarity=0.187 Sum_probs=82.4
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|..+...|++|++||++++.....
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~---------------------------------------- 185 (330)
T PRK12480 146 NMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF---------------------------------------- 185 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----------------------------------------
Confidence 3689999 9999999999999999999999987542110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+....++.+++++||+|+.++|...+.+..+.+++.+.++++++++..
T Consensus 186 --------------------------------~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~ 233 (330)
T PRK12480 186 --------------------------------LTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNA 233 (330)
T ss_pred --------------------------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEc
Confidence 112457888899999999999998876666777888889999998854
Q ss_pred CCC--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TSS--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tSt--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
+-+ +.-..+.+.+. .+....+...+.
T Consensus 234 aRG~~vd~~aL~~aL~~g~i~gaalDV~~ 262 (330)
T PRK12480 234 ARGAVINTPDLIAAVNDGTLLGAAIDTYE 262 (330)
T ss_pred CCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence 444 34445666665 233344455443
No 107
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.51 E-value=4.2e-06 Score=76.02 Aligned_cols=198 Identities=12% Similarity=0.090 Sum_probs=113.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..|+++|++|++++++++.++...+. |+.+ +
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-----------------------g~~~---~------- 47 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-----------------------GLRL---E------- 47 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-----------------------CCcc---c-------
Confidence 379999 9999999999999999999999988776544321 0000 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
++. ....+..+++..+ +.++|+||.|++... ...+++++.+.++++++|++..
T Consensus 48 -------------------~~~-----~~~~~~~~~~~~~-~~~~d~vila~k~~~--~~~~~~~l~~~l~~~~~iv~~~ 100 (304)
T PRK06522 48 -------------------DGE-----ITVPVLAADDPAE-LGPQDLVILAVKAYQ--LPAALPSLAPLLGPDTPVLFLQ 100 (304)
T ss_pred -------------------CCc-----eeecccCCCChhH-cCCCCEEEEeccccc--HHHHHHHHhhhcCCCCEEEEec
Confidence 000 0011223455654 489999999999754 3578888988888887666555
Q ss_pred CCCC-HHHHHhhcCCCCceeee-e-----ecCCC---CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc-
Q psy13746 172 SSFL-PSVLSEHSTHRSQFIVA-H-----PVNPP---YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG- 240 (294)
Q Consensus 172 St~~-~~~ia~~l~~~~~~ig~-h-----~~~p~---~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g- 240 (294)
-++. .+.+...+.. .++++. . ...|- ..+.....++....+.+..+.+.++|...|....+. .+..+
T Consensus 101 nG~~~~~~l~~~~~~-~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~~~~l~~~l~~~~~~~~~~-~di~~~ 178 (304)
T PRK06522 101 NGVGHLEELAAYIGP-ERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAAAEALADLLNAAGLDVEWS-PDIRTE 178 (304)
T ss_pred CCCCcHHHHHHhcCc-ccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHHHHHHHHHHHhcCCCCCCC-hHHHHH
Confidence 5664 3445554432 233321 1 11121 011111122222222244667777888877664433 23111
Q ss_pred ----cHHH------------------------HHHHHHHHHHHHHHHcCCCC--HHHHHHHHH
Q psy13746 241 ----FALN------------------------RIQFAVLNECYHLVHDGVLS--AKDIDRVMS 273 (294)
Q Consensus 241 ----~v~n------------------------ri~~a~~~Ea~~l~~~~~~~--~~~id~a~~ 273 (294)
++.| +++..++.|...+++..|++ .+++.+.+.
T Consensus 179 ~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 241 (304)
T PRK06522 179 IWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVEEVREYVR 241 (304)
T ss_pred HHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 1111 23345688999999987765 344544443
No 108
>KOG2380|consensus
Probab=98.49 E-value=6.8e-06 Score=74.42 Aligned_cols=158 Identities=13% Similarity=0.044 Sum_probs=109.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.+|||| |.||+=.|.-+.++|+.|...||++ -+.+.+++..
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~----------------------------------- 95 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGS----------------------------------- 95 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcc-----------------------------------
Confidence 579999 9999999999999999999999987 4455443320
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhh-ccCCcEEEEcCCcchHHHHHHHHHHhcc-cCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC-LEDAIFIQESVPEILQIKHQVYRAIDIF-MSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a-~~~aDlVieavpe~~~~k~~~~~~l~~~-~~~~~ii~s 169 (294)
...+++.+. -+..|+|+.|+.--. ...+++..-.. ++.+++++.
T Consensus 96 --------------------------------~~ft~lhdlcerhpDvvLlctsils--iekilatypfqrlrrgtlfvd 141 (480)
T KOG2380|consen 96 --------------------------------AKFTLLHDLCERHPDVVLLCTSILS--IEKILATYPFQRLRRGTLFVD 141 (480)
T ss_pred --------------------------------cccccHHHHHhcCCCEEEEEehhhh--HHHHHHhcCchhhccceeEee
Confidence 112233322 368999999985322 34555655444 677899999
Q ss_pred cCCCCCHH--HHHhhcCCCCceeeeeecCCCC-C-----CCeEEEecCCC----CCHHHHHHHHHHHHHcCCeeEEEccc
Q psy13746 170 STSSFLPS--VLSEHSTHRSQFIVAHPVNPPY-F-----IPLVEIVPAAW----TSERVITRTREIMTEIGMKPVTLTTE 237 (294)
Q Consensus 170 ~tSt~~~~--~ia~~l~~~~~~ig~h~~~p~~-~-----~~lveiv~g~~----t~~e~~~~~~~ll~~lG~~~v~v~~~ 237 (294)
.+|...++ ...+.++.-...+..|||.+|. . +-.+.+..... ..++-.+.+.+++.+.|.+.+.+.-+
T Consensus 142 vlSvKefek~lfekYLPkdfDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegckmVemS~e 221 (480)
T KOG2380|consen 142 VLSVKEFEKELFEKYLPKDFDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCKMVEMSYE 221 (480)
T ss_pred eeecchhHHHHHHHhCccccceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCeEEEEEee
Confidence 88875443 4455666566788999998764 1 21333333332 34889999999999999999988655
Q ss_pred ccccH
Q psy13746 238 IRGFA 242 (294)
Q Consensus 238 ~~g~v 242 (294)
.+..+
T Consensus 222 eHDki 226 (480)
T KOG2380|consen 222 EHDKI 226 (480)
T ss_pred ccccc
Confidence 56543
No 109
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.47 E-value=1.9e-06 Score=87.03 Aligned_cols=107 Identities=12% Similarity=0.137 Sum_probs=86.4
Q ss_pred EEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCC--HHHHHhhcCC-CCceeeeeecCCCC------------CCCe
Q psy13746 139 IQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL--PSVLSEHSTH-RSQFIVAHPVNPPY------------FIPL 203 (294)
Q Consensus 139 Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~--~~~ia~~l~~-~~~~ig~h~~~p~~------------~~~l 203 (294)
||.|+|... ..++++++.++++++++|++.+|+.. +..+.+.+.. +.+|+|.|||.... .+..
T Consensus 1 vila~Pv~~--~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQ--TGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHH--HHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCCCe
Confidence 678999765 45899999999999999999988753 2344444442 35799999998763 3568
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccccHHHHHH
Q psy13746 204 VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQ 247 (294)
Q Consensus 204 veiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g~v~nri~ 247 (294)
+.+++.+.++++.+++++++++.+|.+++.+.++.|..++..+.
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iS 122 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVS 122 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHh
Confidence 88999998999999999999999999999998888887766664
No 110
>KOG2653|consensus
Probab=98.46 E-value=6.8e-06 Score=74.75 Aligned_cols=195 Identities=18% Similarity=0.225 Sum_probs=126.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
..|+.| ++||..++.+.+.+||.|.+|+|+..+.++....-.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flanea------------------------------------ 50 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEA------------------------------------ 50 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhh------------------------------------
Confidence 578899 999999999999999999999999999887544211
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhh---ccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLREC---LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a---~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
+| ..+....++++. ++.-..||.-+..-.. ...++++|.+++.++.||+
T Consensus 51 ---------------k~------------~~i~ga~S~ed~v~klk~PR~iillvkAG~p-VD~~I~~L~p~LekgDiII 102 (487)
T KOG2653|consen 51 ---------------KG------------TKIIGAYSLEDFVSKLKKPRVIILLVKAGAP-VDQFIEELVPYLEKGDIII 102 (487)
T ss_pred ---------------cC------------CcccCCCCHHHHHHhcCCCcEEEEEeeCCCc-HHHHHHHHHhhcCCCCEEE
Confidence 11 012333444433 4456666665544332 3567889999999988888
Q ss_pred ecCCC-CCHH--HHHhhcCCCCceeeeeecCCCCCCC-eEEEecCCCCCHHHHHHHHHHHHHcCCe-------eEEEccc
Q psy13746 169 SSTSS-FLPS--VLSEHSTHRSQFIVAHPVNPPYFIP-LVEIVPAAWTSERVITRTREIMTEIGMK-------PVTLTTE 237 (294)
Q Consensus 169 s~tSt-~~~~--~ia~~l~~~~~~ig~h~~~p~~~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~-------~v~v~~~ 237 (294)
+..-+ ++-+ ...+..+...-|+|...-......+ -..+||| +++++...++++|+.+..+ ..+++..
T Consensus 103 DGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpG--g~~~Awp~ik~ifq~iaakv~~~epCc~wvG~~ 180 (487)
T KOG2653|consen 103 DGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPG--GSKEAWPHIKDIFQKIAAKVSDGEPCCDWVGEG 180 (487)
T ss_pred eCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCC--CChHHHHHHHHHHHHHHHHhcCCCCCeeeecCC
Confidence 65533 3211 2222222334466654432211100 1227888 7999999999999988643 2566544
Q ss_pred ccccHH----HHHH---HHHHHHHHHHHHc-CCCCHHHHHHHHHc
Q psy13746 238 IRGFAL----NRIQ---FAVLNECYHLVHD-GVLSAKDIDRVMSE 274 (294)
Q Consensus 238 ~~g~v~----nri~---~a~~~Ea~~l~~~-~~~~~~~id~a~~~ 274 (294)
+.|..+ |-+= ..++.||+.+++. ++.+-+++.++...
T Consensus 181 GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~ 225 (487)
T KOG2653|consen 181 GAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDD 225 (487)
T ss_pred CCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 555433 3222 4689999999999 88899998888764
No 111
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.45 E-value=1.8e-06 Score=79.07 Aligned_cols=113 Identities=11% Similarity=0.144 Sum_probs=80.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|.+||++++......
T Consensus 136 g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~--------------------------------------- 176 (312)
T PRK15469 136 DFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ--------------------------------------- 176 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce---------------------------------------
Confidence 3789999 99999999999999999999998753311000
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
......++++++++||+|+.++|.+.+.+.-+-++....++++++++ |
T Consensus 177 -------------------------------~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lI-N 224 (312)
T PRK15469 177 -------------------------------SFAGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLL-N 224 (312)
T ss_pred -------------------------------eecccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEE-E
Confidence 00112478888999999999999988766555566777899999887 5
Q ss_pred CC-C--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TS-S--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
++ + +.-+.+.+.+. ...+..+...|.
T Consensus 225 ~aRG~vVde~aL~~aL~~g~i~gaalDVf~ 254 (312)
T PRK15469 225 LARGVHVVEDDLLAALDSGKVKGAMLDVFS 254 (312)
T ss_pred CCCccccCHHHHHHHHhcCCeeeEEecCCC
Confidence 55 2 44446666665 333444455443
No 112
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.43 E-value=2.8e-07 Score=93.15 Aligned_cols=58 Identities=26% Similarity=0.274 Sum_probs=54.1
Q ss_pred cccccHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 237 EIRGFALNRIQFAVLNECYHLVHDGV-LSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 237 ~~~g~v~nri~~a~~~Ea~~l~~~~~-~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
..+|++.||++.++++|+++++++|. .+++|||.++..|+|||+...|||+++|.+|.
T Consensus 606 ~~~g~v~~Rll~~~~~Ea~~ll~eGvva~~~dID~~~~~g~G~p~~~~Gpf~~~D~~Gl 664 (699)
T TIGR02440 606 KEASAVAERCVMLMLNEAVRCLDEGVIRSPRDGDIGAIFGIGFPPFLGGPFRYIDTLGA 664 (699)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCCcCCHHHHHHHhCH
Confidence 46789999999999999999999997 89999999999999999777899999999883
No 113
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.42 E-value=5.2e-07 Score=73.79 Aligned_cols=119 Identities=15% Similarity=0.084 Sum_probs=74.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
-++|+|+ |.||.+++..++..| ++|+++|++++..++..+.+..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~--------------------------------- 65 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE--------------------------------- 65 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh---------------------------------
Confidence 3689999 999999999999986 8999999999887654432210
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH-HHHHHHHHHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ-IKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~-~k~~~~~~l~~~~~~~~ii~ 168 (294)
.+ . .....+..+.++++|+||.|+|.... .....+. ...++++++++
T Consensus 66 -----------------~~-~------------~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~--~~~~~~~~~v~ 113 (155)
T cd01065 66 -----------------LG-I------------AIAYLDLEELLAEADLIINTTPVGMKPGDELPLP--PSLLKPGGVVY 113 (155)
T ss_pred -----------------cc-c------------ceeecchhhccccCCEEEeCcCCCCCCCCCCCCC--HHHcCCCCEEE
Confidence 00 0 01123555567999999999998763 1111111 12356788887
Q ss_pred ecCCCCCHHHHHhhcC-CCCceeeeeecC
Q psy13746 169 SSTSSFLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 169 s~tSt~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
+.++....+.+.+.+. +..+++.+|+|.
T Consensus 114 D~~~~~~~~~l~~~~~~~g~~~v~g~~~~ 142 (155)
T cd01065 114 DVVYNPLETPLLKEARALGAKTIDGLEML 142 (155)
T ss_pred EcCcCCCCCHHHHHHHHCCCceeCCHHHH
Confidence 6655433234444333 345666666553
No 114
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.40 E-value=2.9e-06 Score=78.52 Aligned_cols=102 Identities=25% Similarity=0.217 Sum_probs=74.8
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+.+|..+...|++|.+||+++.... ..+
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~------------------------------------- 190 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKE------------------------------------- 190 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHH-------------------------------------
Confidence 34799999 99999999999999999999999864321 000
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| .. ..++.+.+++||+|+.++|.+.+.+.-+-++..+.++++++++
T Consensus 191 -----------------~~--------------~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lI- 237 (333)
T PRK13243 191 -----------------LG--------------AE-YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILV- 237 (333)
T ss_pred -----------------cC--------------CE-ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE-
Confidence 01 11 2468888999999999999887765555567777899999987
Q ss_pred cCCC---CCHHHHHhhcC
Q psy13746 170 STSS---FLPSVLSEHST 184 (294)
Q Consensus 170 ~tSt---~~~~~ia~~l~ 184 (294)
|+|. +.-..+.+.+.
T Consensus 238 N~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 238 NTARGKVVDTKALVKALK 255 (333)
T ss_pred ECcCchhcCHHHHHHHHH
Confidence 5553 33345656554
No 115
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.40 E-value=3.6e-07 Score=92.57 Aligned_cols=58 Identities=24% Similarity=0.244 Sum_probs=54.0
Q ss_pred cccccHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 237 EIRGFALNRIQFAVLNECYHLVHDGV-LSAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 237 ~~~g~v~nri~~a~~~Ea~~l~~~~~-~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
..+|++.||++.++++|+++++++|. .+++|||.++..|+|||....|||+++|.+|.
T Consensus 613 ~~~g~i~~Rll~~~~nEa~~ll~eGvva~~~dID~~~~~G~G~p~~~gGp~~~~D~~Gl 671 (708)
T PRK11154 613 LSANEIAERCVMLMLNEAVRCLDEGIIRSARDGDIGAVFGIGFPPFLGGPFRYMDSLGA 671 (708)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCcCCHHHHHHHHHhcCCCCCccCCHHHHHHHhCH
Confidence 46899999999999999999999997 89999999999999999767799999999883
No 116
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.39 E-value=3.3e-05 Score=70.84 Aligned_cols=203 Identities=12% Similarity=0.129 Sum_probs=113.7
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|..++|+|| |.||+.+|..|+++|++|+++.|++. +...+. |..+..
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~-----------------------g~~~~~------ 51 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVREN-----------------------GLQVDS------ 51 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhC-----------------------CeEEEe------
Confidence 445789999 99999999999999999999999863 221110 110000
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
..+ ..........++.+ ....+|+||.|++... -.+++..+.+.++++++|+
T Consensus 52 ---------------------~~~----~~~~~~~~~~~~~~-~~~~~D~vilavK~~~--~~~~~~~l~~~~~~~~~iv 103 (313)
T PRK06249 52 ---------------------VHG----DFHLPPVQAYRSAE-DMPPCDWVLVGLKTTA--NALLAPLIPQVAAPDAKVL 103 (313)
T ss_pred ---------------------CCC----CeeecCceEEcchh-hcCCCCEEEEEecCCC--hHhHHHHHhhhcCCCCEEE
Confidence 000 00001122334444 4678999999998754 2467788888888887766
Q ss_pred ecCCCCCH-HHHHhhcCCCCceeee-ee-----cCCC---CCC-CeEEEecCCCCC-----HHHHHHHHHHHHHcCCeeE
Q psy13746 169 SSTSSFLP-SVLSEHSTHRSQFIVA-HP-----VNPP---YFI-PLVEIVPAAWTS-----ERVITRTREIMTEIGMKPV 232 (294)
Q Consensus 169 s~tSt~~~-~~ia~~l~~~~~~ig~-h~-----~~p~---~~~-~lveiv~g~~t~-----~e~~~~~~~ll~~lG~~~v 232 (294)
+..-++.. +.++..++ +.+++++ .+ ..|. +.+ ..+.+-.-+..+ .+..+.+..+|+..|..+.
T Consensus 104 ~lqNG~~~~e~l~~~~~-~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~~~ 182 (313)
T PRK06249 104 LLQNGLGVEEQLREILP-AEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVEEGAALFRAAGIDSQ 182 (313)
T ss_pred EecCCCCcHHHHHHHCC-CCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHHHHHHHHHhCCCCce
Confidence 55445543 34555553 2344432 22 2221 011 112221111112 4566778888888887665
Q ss_pred EEcccccc-----cHHH------------------------HHHHHHHHHHHHHHHcCCCC--HHHHHHHHHc
Q psy13746 233 TLTTEIRG-----FALN------------------------RIQFAVLNECYHLVHDGVLS--AKDIDRVMSE 274 (294)
Q Consensus 233 ~v~~~~~g-----~v~n------------------------ri~~a~~~Ea~~l~~~~~~~--~~~id~a~~~ 274 (294)
.. .|... ++.| .++..++.|+.++++..|++ .+.++..+..
T Consensus 183 ~~-~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~ 254 (313)
T PRK06249 183 AM-PDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAV 254 (313)
T ss_pred eC-chHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Confidence 54 34322 1111 12234688999999988776 3334555443
No 117
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.38 E-value=2.3e-06 Score=78.19 Aligned_cols=97 Identities=18% Similarity=0.144 Sum_probs=65.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
+||+|| |.||..+|..++..|+ +|.++|++++. .++... . .|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l-~~g~a~-d----~~----------------------------- 46 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGI-PQGKAL-D----MY----------------------------- 46 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCCh-hHHHHH-h----hh-----------------------------
Confidence 489999 9999999999999887 89999997663 332210 0 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCc--------------chHHHHHHHHH
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE--------------ILQIKHQVYRA 156 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe--------------~~~~k~~~~~~ 156 (294)
+.+. ......++++++|+++ +++||+||.|++. |..+.+++.++
T Consensus 47 ---------------~~~~------~~~~~~~i~~t~d~~~-~~~aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~ 104 (305)
T TIGR01763 47 ---------------EASP------VGGFDTKVTGTNNYAD-TANSDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGR 104 (305)
T ss_pred ---------------hhhh------ccCCCcEEEecCCHHH-hCCCCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 0000 0011245777889986 8999999999882 33445566677
Q ss_pred HhcccCCCeEEE
Q psy13746 157 IDIFMSSNTILS 168 (294)
Q Consensus 157 l~~~~~~~~ii~ 168 (294)
+.++.+ +++|+
T Consensus 105 I~~~~p-~~~iI 115 (305)
T TIGR01763 105 IMEHSP-NPIIV 115 (305)
T ss_pred HHHHCC-CeEEE
Confidence 888764 55444
No 118
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=98.37 E-value=7.6e-06 Score=74.59 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=90.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+++|.+|...|++|++||+.....+.+..
T Consensus 16 gKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~-------------------------------------- 57 (335)
T PRK13403 16 GKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA-------------------------------------- 57 (335)
T ss_pred cCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH--------------------------------------
Confidence 3689999 999999999999999999999976433222111
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~s 169 (294)
.| ... .++.++++.||+|+.++|.+.+ + .++ .++.+.++++++++.
T Consensus 58 ----------------~G--------------~~v-~sl~Eaak~ADVV~llLPd~~t-~-~V~~~eil~~MK~GaiL~f 104 (335)
T PRK13403 58 ----------------DG--------------FEV-MSVSEAVRTAQVVQMLLPDEQQ-A-HVYKAEVEENLREGQMLLF 104 (335)
T ss_pred ----------------cC--------------CEE-CCHHHHHhcCCEEEEeCCChHH-H-HHHHHHHHhcCCCCCEEEE
Confidence 12 122 3788899999999999997543 4 555 578899999998864
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCCCC----------C----CeEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPPYF----------I----PLVEIVPAAWTSERVITRTREIMTEIGMK 230 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~----------~----~lveiv~g~~t~~e~~~~~~~ll~~lG~~ 230 (294)
+-+..+.. .... |...+.+-...|-.- + .++-+-.. .+..+.+.+..+...+|..
T Consensus 105 -~hgfni~~--~~i~-pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd--~sg~a~~~ala~a~~iG~~ 173 (335)
T PRK13403 105 -SHGFNIHF--GQIN-PPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQD--ATGTALHVALAYAKGVGCT 173 (335)
T ss_pred -CCCcceec--Ccee-CCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEEC--CCCcHHHHHHHHHHHcCCC
Confidence 33443321 1111 222233222333210 1 13334443 3445678888999999976
No 119
>PRK07574 formate dehydrogenase; Provisional
Probab=98.37 E-value=9.6e-06 Score=76.28 Aligned_cols=115 Identities=13% Similarity=0.004 Sum_probs=79.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|+.||++....+...+
T Consensus 192 gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~-------------------------------------- 233 (385)
T PRK07574 192 GMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE-------------------------------------- 233 (385)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhh--------------------------------------
Confidence 3689999 999999999999999999999998632211100
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| ++...+++++++.||+|+.++|.+.+.+.-+=++....++++++++ |
T Consensus 234 ----------------~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N 282 (385)
T PRK07574 234 ----------------LG--------------LTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLV-N 282 (385)
T ss_pred ----------------cC--------------ceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEE-E
Confidence 01 2334678889999999999999887765444356777799999987 5
Q ss_pred CCC---CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TSS---FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tSt---~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
++. +.-..+.+.+. ......++..+.
T Consensus 283 ~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~ 312 (385)
T PRK07574 283 TARGKIVDRDAVVRALESGHLAGYAGDVWF 312 (385)
T ss_pred CCCCchhhHHHHHHHHHhCCccEEEEecCC
Confidence 553 23335655554 233334455443
No 120
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.37 E-value=1.8e-06 Score=77.28 Aligned_cols=95 Identities=19% Similarity=0.190 Sum_probs=70.3
Q ss_pred eEEE---ccccHHHHHHHHHCC----CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 16 DGII---GLIGQAWAMIFASAG----YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 16 i~ii---G~mG~~iA~~~~~~G----~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
|+|| |.||..+|..++..| .+|.++|+++++++.....+.+
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~-------------------------------- 48 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQD-------------------------------- 48 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHH--------------------------------
Confidence 5778 889999999999999 7999999999877654433221
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEE--------------cCCcchHHHHHHH
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQE--------------SVPEILQIKHQVY 154 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVie--------------avpe~~~~k~~~~ 154 (294)
+... . ...+++.++|+.+++++||+||+ .+.++..+++++.
T Consensus 49 ---------------~~~~---------~-~~~~i~~~~d~~~~~~~aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~ 103 (263)
T cd00650 49 ---------------AVEP---------L-ADIKVSITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIG 103 (263)
T ss_pred ---------------hhhh---------c-cCcEEEECCchHHHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHH
Confidence 1000 0 11346777887678999999999 5666778899999
Q ss_pred HHHhcccCCCeEEE
Q psy13746 155 RAIDIFMSSNTILS 168 (294)
Q Consensus 155 ~~l~~~~~~~~ii~ 168 (294)
+++.+++ +++++.
T Consensus 104 ~~i~~~~-p~a~~i 116 (263)
T cd00650 104 DNIEKYS-PDAWII 116 (263)
T ss_pred HHHHHHC-CCeEEE
Confidence 9999988 555554
No 121
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=98.34 E-value=4.3e-06 Score=68.57 Aligned_cols=90 Identities=22% Similarity=0.251 Sum_probs=64.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE-QIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |..|.+.|.+|...|++|++-.+..+ ..+++++
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~-------------------------------------- 46 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA-------------------------------------- 46 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH--------------------------------------
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH--------------------------------------
Confidence 689999 99999999999999999999999876 4443332
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~s 169 (294)
.| +. ..+.+|+++.+|+|+..+|+... .+++ ++|.+.++++.++..
T Consensus 47 ----------------~G--------------f~-v~~~~eAv~~aDvV~~L~PD~~q--~~vy~~~I~p~l~~G~~L~f 93 (165)
T PF07991_consen 47 ----------------DG--------------FE-VMSVAEAVKKADVVMLLLPDEVQ--PEVYEEEIAPNLKPGATLVF 93 (165)
T ss_dssp ----------------TT---------------E-CCEHHHHHHC-SEEEE-S-HHHH--HHHHHHHHHHHS-TT-EEEE
T ss_pred ----------------CC--------------Ce-eccHHHHHhhCCEEEEeCChHHH--HHHHHHHHHhhCCCCCEEEe
Confidence 23 22 34778899999999999998763 4676 789999999998864
Q ss_pred cCCCCC
Q psy13746 170 STSSFL 175 (294)
Q Consensus 170 ~tSt~~ 175 (294)
+.+..
T Consensus 94 -ahGfn 98 (165)
T PF07991_consen 94 -AHGFN 98 (165)
T ss_dssp -SSSHH
T ss_pred -CCcch
Confidence 44443
No 122
>PLN03139 formate dehydrogenase; Provisional
Probab=98.32 E-value=1.4e-05 Score=75.13 Aligned_cols=116 Identities=11% Similarity=0.022 Sum_probs=81.1
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.||+.+|..+...|++|..||++....+...+
T Consensus 198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~------------------------------------- 240 (386)
T PLN03139 198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE------------------------------------- 240 (386)
T ss_pred CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhh-------------------------------------
Confidence 34689999 999999999999999999999998532211100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.| +...+++++.+++||+|+.++|.+.+.+.-+-+++...++++++|+
T Consensus 241 -----------------~g--------------~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI- 288 (386)
T PLN03139 241 -----------------TG--------------AKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIV- 288 (386)
T ss_pred -----------------cC--------------ceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEE-
Confidence 01 2334688888999999999999887765555467788899999987
Q ss_pred cCCC---CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 170 STSS---FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 170 ~tSt---~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
|++. +.-+.+.+.+. ......++..|.
T Consensus 289 N~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~ 319 (386)
T PLN03139 289 NNARGAIMDTQAVADACSSGHIGGYGGDVWY 319 (386)
T ss_pred ECCCCchhhHHHHHHHHHcCCceEEEEcCCC
Confidence 5653 23335666654 233334455443
No 123
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.27 E-value=1.5e-05 Score=72.82 Aligned_cols=109 Identities=12% Similarity=0.124 Sum_probs=76.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|++||++... +
T Consensus 122 gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~-----~-------------------------------------- 158 (303)
T PRK06436 122 NKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN-----D-------------------------------------- 158 (303)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc-----c--------------------------------------
Confidence 3789999 999999999888889999999987421 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
|. .....++++.+++||+|+.++|.+.+.+.-+-++....++++++++ |
T Consensus 159 -----------------~~-------------~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lI-N 207 (303)
T PRK06436 159 -----------------GI-------------SSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAII-N 207 (303)
T ss_pred -----------------Cc-------------ccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEE-E
Confidence 00 0012467888999999999999887755444456667789999987 5
Q ss_pred CCC---CCHHHHHhhcCC-CCceeeeeec
Q psy13746 171 TSS---FLPSVLSEHSTH-RSQFIVAHPV 195 (294)
Q Consensus 171 tSt---~~~~~ia~~l~~-~~~~ig~h~~ 195 (294)
+|. +.-..+.+.+.. .....+...+
T Consensus 208 ~sRG~~vd~~aL~~aL~~g~i~~a~lDV~ 236 (303)
T PRK06436 208 VARADVVDKNDMLNFLRNHNDKYYLSDVW 236 (303)
T ss_pred CCCccccCHHHHHHHHHcCCceEEEEccC
Confidence 553 334456666652 3344444444
No 124
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.22 E-value=1.6e-06 Score=87.90 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=50.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 239 RGFALNRIQFAVLNECYHLVHDGV-LSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 239 ~g~v~nri~~a~~~Ea~~l~~~~~-~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
...+.||++.++++|+++++++|. ++++|||.+++.|+|||+...|||+++|.+|
T Consensus 624 ~~~i~nRll~~~~~Ea~~ll~eGvva~~~dID~a~~~g~G~p~~~gGPf~~~D~~G 679 (715)
T PRK11730 624 DEEIIARMMIPMINEVVRCLEEGIVASPAEADMALVYGLGFPPFRGGAFRYLDTLG 679 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHhCCCCCCCcCCHHHHHHHhC
Confidence 345899999999999999999996 8999999999999999977789999999988
No 125
>KOG2711|consensus
Probab=98.15 E-value=2.4e-05 Score=70.95 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=110.1
Q ss_pred CCCCCccceEEE--ccccHHHHHHHHHC--CC-----eEEEEeCChHHHH---HHHHHHHhhhhhhhhcccccCCCCCcc
Q psy13746 8 PAQGGFYPDGII--GLIGQAWAMIFASA--GY-----KVSLYDVLSEQIE---NAKNTIQHTLQDYHQKGCLKGSLSPAH 75 (294)
Q Consensus 8 ~~~~~~~~i~ii--G~mG~~iA~~~~~~--G~-----~V~~~d~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~~ 75 (294)
+.++.-.||+|| |.||++||..+... ++ +|.+|-..++.-. .+.+-|+.+|++.
T Consensus 16 ~~~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~-------------- 81 (372)
T KOG2711|consen 16 KAERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENV-------------- 81 (372)
T ss_pred chhcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccc--------------
Confidence 345555789999 99999999988763 23 6888877665544 5666666655543
Q ss_pred CCceeEEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH
Q psy13746 76 AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR 155 (294)
Q Consensus 76 ~~~~v~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~ 155 (294)
++| ..-..+.++..++|+.+++.|||++|..+|-.. ...+++
T Consensus 82 -----------------------KYl-------------pg~~lP~NvvAv~dl~ea~~dADilvf~vPhQf--~~~ic~ 123 (372)
T KOG2711|consen 82 -----------------------KYL-------------PGIKLPENVVAVPDLVEAAKDADILVFVVPHQF--IPRICE 123 (372)
T ss_pred -----------------------ccc-------------CCccCCCCeEecchHHHHhccCCEEEEeCChhh--HHHHHH
Confidence 222 112334567888999999999999999999754 568999
Q ss_pred HHhcccCCCeEEEecCCCCCHH-----------HHHhhcCCCCceeeeeecCCC-CCCCeEEEecCCCCCHHHHHHHHHH
Q psy13746 156 AIDIFMSSNTILSSSTSSFLPS-----------VLSEHSTHRSQFIVAHPVNPP-YFIPLVEIVPAAWTSERVITRTREI 223 (294)
Q Consensus 156 ~l~~~~~~~~ii~s~tSt~~~~-----------~ia~~l~~~~~~ig~h~~~p~-~~~~lveiv~g~~t~~e~~~~~~~l 223 (294)
+|..++++++..+|.+-++... .|.+.+.-|-.++.+--+.+. ......|-+-|...+.+.-..++.+
T Consensus 124 ~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~l 203 (372)
T KOG2711|consen 124 QLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASEVANEKFCETTIGYKDKKEAGILLKKL 203 (372)
T ss_pred HHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHHHHhccccceeEeccchhhcchHHHHH
Confidence 9999999999887776665421 223334333333322211110 0122333333322233332346677
Q ss_pred HHHcCCeeEEEccccc
Q psy13746 224 MTEIGMKPVTLTTEIR 239 (294)
Q Consensus 224 l~~lG~~~v~v~~~~~ 239 (294)
|+.--.++..+ .|..
T Consensus 204 f~~p~FrV~~~-~D~~ 218 (372)
T KOG2711|consen 204 FRTPYFRVVVV-EDAD 218 (372)
T ss_pred hCCCceEEEEe-ccch
Confidence 77766666665 3444
No 126
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.15 E-value=9.7e-06 Score=75.02 Aligned_cols=111 Identities=17% Similarity=0.166 Sum_probs=73.8
Q ss_pred ccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
-++|+|| |.||+++|..++ ..|++|+.||+++..... .
T Consensus 146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~--~------------------------------------- 186 (332)
T PRK08605 146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA--T------------------------------------- 186 (332)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH--h-------------------------------------
Confidence 3689999 999999999995 468899999998643210 0
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHH-HHHhcccCCCeEEE
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY-RAIDIFMSSNTILS 168 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~-~~l~~~~~~~~ii~ 168 (294)
+ +...+++++++++||+|+.++|.....+ .++ +++.+.++++++|+
T Consensus 187 ------------------~--------------~~~~~~l~ell~~aDvIvl~lP~t~~t~-~li~~~~l~~mk~gailI 233 (332)
T PRK08605 187 ------------------Y--------------VDYKDTIEEAVEGADIVTLHMPATKYNH-YLFNADLFKHFKKGAVFV 233 (332)
T ss_pred ------------------h--------------ccccCCHHHHHHhCCEEEEeCCCCcchh-hhcCHHHHhcCCCCcEEE
Confidence 0 1234578888999999999999876543 333 45667789999887
Q ss_pred ecCCCCC--HHHHHhhcC-CCCceeeeeec
Q psy13746 169 SSTSSFL--PSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 169 s~tSt~~--~~~ia~~l~-~~~~~ig~h~~ 195 (294)
..+.+.. ...+.+.+. .+....+...+
T Consensus 234 N~sRG~~vd~~aL~~aL~~g~i~gaalDV~ 263 (332)
T PRK08605 234 NCARGSLVDTKALLDALDNGLIKGAALDTY 263 (332)
T ss_pred ECCCCcccCHHHHHHHHHhCCeeEEEEecc
Confidence 4443432 334555553 23333344443
No 127
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.07 E-value=1.1e-05 Score=67.88 Aligned_cols=113 Identities=20% Similarity=0.182 Sum_probs=74.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.+|+.+|..+...|.+|+.||++........+
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~--------------------------------------- 77 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADE--------------------------------------- 77 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHH---------------------------------------
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhccc---------------------------------------
Confidence 689999 999999999999999999999999876441111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.+ . ...++++.++.||+|+.++|-+.+-+.-+=++....++++++++ |+
T Consensus 78 ---------------~~--------------~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lv-N~ 126 (178)
T PF02826_consen 78 ---------------FG--------------V-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLV-NV 126 (178)
T ss_dssp ---------------TT--------------E-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEE-ES
T ss_pred ---------------cc--------------c-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEE-ec
Confidence 01 1 23588889999999999999765433222244556688999987 55
Q ss_pred C-C--CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 172 S-S--FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 172 S-t--~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
+ + +.-+.+.+.+.. +....+...+.
T Consensus 127 aRG~~vde~aL~~aL~~g~i~ga~lDV~~ 155 (178)
T PF02826_consen 127 ARGELVDEDALLDALESGKIAGAALDVFE 155 (178)
T ss_dssp SSGGGB-HHHHHHHHHTTSEEEEEESS-S
T ss_pred cchhhhhhhHHHHHHhhccCceEEEECCC
Confidence 5 3 444466666653 33334444443
No 128
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.07 E-value=3.7e-05 Score=75.49 Aligned_cols=129 Identities=22% Similarity=0.176 Sum_probs=84.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|+.||+.... +...+
T Consensus 138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~-------------------------------------- 178 (525)
T TIGR01327 138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQ-------------------------------------- 178 (525)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHh--------------------------------------
Confidence 3689999 999999999999999999999985321 11100
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| ....+++.+.+++||+|+.++|.+.+.+.-+=++..+.++++++++ |
T Consensus 179 ----------------~g--------------~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lI-N 227 (525)
T TIGR01327 179 ----------------LG--------------VELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIV-N 227 (525)
T ss_pred ----------------cC--------------CEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEE-E
Confidence 01 2334578888999999999999877654333345566789999887 5
Q ss_pred CC-C--CCHHHHHhhcC-CCCceeeeeecC--CC-----CCCCeEEEecCCC
Q psy13746 171 TS-S--FLPSVLSEHST-HRSQFIVAHPVN--PP-----YFIPLVEIVPAAW 211 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~-~~~~~ig~h~~~--p~-----~~~~lveiv~g~~ 211 (294)
++ + +.-..+.+.+. ......+...|. |+ +..+-+.++|+-.
T Consensus 228 ~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia 279 (525)
T TIGR01327 228 CARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLG 279 (525)
T ss_pred cCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCcc
Confidence 55 3 34446666664 333444454443 32 2234556666543
No 129
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.06 E-value=4e-05 Score=70.59 Aligned_cols=112 Identities=21% Similarity=0.194 Sum_probs=77.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|||| |.+|+.+|..+..-|++|++||+ .+......
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~---------------------------------------- 182 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGV---------------------------------------- 182 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhcc----------------------------------------
Confidence 689999 99999999999999999999999 43321110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| ....+++++.++.||+|...+|...+-+.-+=++....++++++++ |
T Consensus 183 ----------------~~--------------~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailI-N 231 (324)
T COG0111 183 ----------------DG--------------VVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILI-N 231 (324)
T ss_pred ----------------cc--------------ceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEE-E
Confidence 01 1234679999999999999999987644333245556688999876 7
Q ss_pred CCC---CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 171 TSS---FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 171 tSt---~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
++- +.-+.+.+.+.. ..+-.+...|.
T Consensus 232 ~aRG~vVde~aL~~AL~~G~i~gA~lDVf~ 261 (324)
T COG0111 232 AARGGVVDEDALLAALDSGKIAGAALDVFE 261 (324)
T ss_pred CCCcceecHHHHHHHHHcCCcceEEecCCC
Confidence 773 344466666653 23334444443
No 130
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.05 E-value=3.1e-05 Score=63.76 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=56.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+++.|+ |..|+++|+.|+..|.+|+++|++|-+.-++..
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~--------------------------------------- 64 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAM--------------------------------------- 64 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHH---------------------------------------
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhh---------------------------------------
Confidence 567777 999999999999999999999999965433221
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.| +.. .+++++++.+|++|.+.-....+..+-| +.+++++|+++.+
T Consensus 65 ---------------dG--------------f~v-~~~~~a~~~adi~vtaTG~~~vi~~e~~----~~mkdgail~n~G 110 (162)
T PF00670_consen 65 ---------------DG--------------FEV-MTLEEALRDADIFVTATGNKDVITGEHF----RQMKDGAILANAG 110 (162)
T ss_dssp ---------------TT---------------EE-E-HHHHTTT-SEEEE-SSSSSSB-HHHH----HHS-TTEEEEESS
T ss_pred ---------------cC--------------cEe-cCHHHHHhhCCEEEECCCCccccCHHHH----HHhcCCeEEeccC
Confidence 12 232 3677899999999998766433333333 3478899998655
Q ss_pred C
Q psy13746 172 S 172 (294)
Q Consensus 172 S 172 (294)
+
T Consensus 111 h 111 (162)
T PF00670_consen 111 H 111 (162)
T ss_dssp S
T ss_pred c
Confidence 5
No 131
>KOG2666|consensus
Probab=98.05 E-value=0.00028 Score=63.59 Aligned_cols=208 Identities=16% Similarity=0.188 Sum_probs=126.5
Q ss_pred cceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.||.-| |++|.+-+...+. +- .+|+++|++..++..=.. .++|.| +
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wns---d~lpiy----------------------e----- 51 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNS---DKLPIY----------------------E----- 51 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccC---CCCccc----------------------C-----
Confidence 567777 9999987766554 43 589999999888764211 223333 1
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCc-------------chHHHHHHHHH
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPE-------------ILQIKHQVYRA 156 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe-------------~~~~k~~~~~~ 156 (294)
..|++.+++- +| .++-+++|.+++++.+|+||.++-. |+..-....+.
T Consensus 52 ---------pgldevv~~c--rg--------knlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~es~ar~ 112 (481)
T KOG2666|consen 52 ---------PGLDEVVKQC--RG--------KNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYWESAARM 112 (481)
T ss_pred ---------CCHHHHHHHh--cC--------CceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHHHHHHHH
Confidence 1222223221 11 3577899999999999999998754 33333455566
Q ss_pred HhcccCCCeEEEecCCCCCHH---HHHhhcCCCCceeeeee--c-CCCC----------CCCeEEEecCCCCCH--HHHH
Q psy13746 157 IDIFMSSNTILSSSTSSFLPS---VLSEHSTHRSQFIVAHP--V-NPPY----------FIPLVEIVPAAWTSE--RVIT 218 (294)
Q Consensus 157 l~~~~~~~~ii~s~tSt~~~~---~ia~~l~~~~~~ig~h~--~-~p~~----------~~~lveiv~g~~t~~--e~~~ 218 (294)
|.+......|++ --|++++. .+...+.|... |.+| + ||.. .++--.+++|..|.+ ++++
T Consensus 113 ia~~s~~~kivv-ekstvpv~aaesi~~il~~n~~--~i~fqilsnpeflaegtaikdl~npdrvligg~etpeg~~av~ 189 (481)
T KOG2666|consen 113 IADVSVSDKIVV-EKSTVPVKAAESIEKILNHNSK--GIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRETPEGFQAVQ 189 (481)
T ss_pred HHHhccCCeEEE-eeccccchHHHHHHHHHhcCCC--CceeEeccChHHhcccchhhhhcCCceEEECCCCChhHHHHHH
Confidence 777777788876 56777765 34444543222 3333 1 2211 123334788876543 4466
Q ss_pred HHHHHHHHcCCeeEEE-c----ccccccHHHHHHHH---HHHHHHHHHHcCCCCHHHHHHHHH
Q psy13746 219 RTREIMTEIGMKPVTL-T----TEIRGFALNRIQFA---VLNECYHLVHDGVLSAKDIDRVMS 273 (294)
Q Consensus 219 ~~~~ll~~lG~~~v~v-~----~~~~g~v~nri~~a---~~~Ea~~l~~~~~~~~~~id~a~~ 273 (294)
.+..+++.|--+--++ + .+-+.+.+|..++. -+|..-++++.-|++..++..++.
T Consensus 190 ~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatgadv~eva~avg 252 (481)
T KOG2666|consen 190 ALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATGADVSEVAYAVG 252 (481)
T ss_pred HHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhc
Confidence 6677777775432222 1 12234456666542 466777899999999999988873
No 132
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.05 E-value=6e-06 Score=83.74 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=50.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHcccCCCcCCCChhhhhcccC
Q psy13746 239 RGFALNRIQFAVLNECYHLVHDG-VLSAKDIDRVMSEGLGLRYAFLGPLETIHLNS 293 (294)
Q Consensus 239 ~g~v~nri~~a~~~Ea~~l~~~~-~~~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~ 293 (294)
...+.||++.+++||+++++++| ..+++|||.++..|+|||....|||+++|.+|
T Consensus 624 ~~~i~~Rll~~~~nEa~~ll~eGiva~~~dID~~~~~G~Gfp~~~gGP~~~~D~~G 679 (714)
T TIGR02437 624 DEEIIARMMIPMINETVRCLEEGIVATAAEADMGLVYGLGFPPFRGGAFRYLDSIG 679 (714)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHhCCCCCCccCCHHHHHHHhC
Confidence 34589999999999999999999 88899999999999999976779999999987
No 133
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.99 E-value=3.8e-05 Score=65.98 Aligned_cols=116 Identities=18% Similarity=0.163 Sum_probs=69.9
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC-eEEEEeCC---hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY-KVSLYDVL---SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
-.+|+|+ |.||+.+|..|++.|+ +++++|.+ ++.+.+- .|- .-|+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq---------~~~-------------------~~~iG 72 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQ---------QYK-------------------ASQVG 72 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccc---------cCC-------------------hhhCC
Confidence 3589999 9999999999999998 79999999 5555431 010 00111
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
....+.+. +.+.++. ...........++ .+++.+.++++|+||+| .++.+.|..++.++.+..+...+
T Consensus 73 ~~Ka~~~~----~~l~~in------p~~~i~~~~~~i~-~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~i 140 (200)
T TIGR02354 73 EPKTEALK----ENISEIN------PYTEIEAYDEKIT-EENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYL 140 (200)
T ss_pred CHHHHHHH----HHHHHHC------CCCEEEEeeeeCC-HhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcE
Confidence 11111111 2222110 0000001111121 13445568899999999 68889998889998887777666
Q ss_pred EE
Q psy13746 167 LS 168 (294)
Q Consensus 167 i~ 168 (294)
++
T Consensus 141 i~ 142 (200)
T TIGR02354 141 IA 142 (200)
T ss_pred EE
Confidence 65
No 134
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.96 E-value=8.3e-05 Score=73.03 Aligned_cols=128 Identities=23% Similarity=0.202 Sum_probs=84.3
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|++|++||+.... +...+
T Consensus 140 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~-------------------------------------- 180 (526)
T PRK13581 140 GKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQ-------------------------------------- 180 (526)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHh--------------------------------------
Confidence 3689999 999999999999999999999986421 11100
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.| .... ++++.+++||+|+.++|...+.+.-+-++..+.++++++++ |
T Consensus 181 ----------------~g--------------~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lI-N 228 (526)
T PRK13581 181 ----------------LG--------------VELV-SLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRII-N 228 (526)
T ss_pred ----------------cC--------------CEEE-cHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEE-E
Confidence 01 1223 68888999999999999887654433356777789999987 5
Q ss_pred CC-C--CCHHHHHhhcC-CCCceeeeeecC--CC-----CCCCeEEEecCCC
Q psy13746 171 TS-S--FLPSVLSEHST-HRSQFIVAHPVN--PP-----YFIPLVEIVPAAW 211 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~-~~~~~ig~h~~~--p~-----~~~~lveiv~g~~ 211 (294)
++ + +.-..+.+.+. ......+...|. |+ +..+-+.++|+-.
T Consensus 229 ~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia 280 (526)
T PRK13581 229 CARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLG 280 (526)
T ss_pred CCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccc
Confidence 54 3 34446666664 233334444433 32 2234556777643
No 135
>PLN02928 oxidoreductase family protein
Probab=97.93 E-value=0.00014 Score=67.81 Aligned_cols=126 Identities=12% Similarity=-0.032 Sum_probs=78.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.||+.+|..+...|.+|++||++..........+. ..+
T Consensus 159 gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~---~~~----------------------------- 206 (347)
T PLN02928 159 GKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIP---NGD----------------------------- 206 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccc---ccc-----------------------------
Confidence 3689999 999999999999999999999997432111000000 000
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
...+... .....++.+++++||+|+.++|-+.+-+.-+-++....++++++|+ |
T Consensus 207 ----------~~~~~~~---------------~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lI-N 260 (347)
T PLN02928 207 ----------VDDLVDE---------------KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLV-N 260 (347)
T ss_pred ----------ccccccc---------------cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEE-E
Confidence 0000000 0013578889999999999999877654333356667789999987 5
Q ss_pred CC-C--CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 171 TS-S--FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
++ + +.-+.+.+.+.. .....+...+.
T Consensus 261 vaRG~lVde~AL~~AL~~g~i~gAaLDV~~ 290 (347)
T PLN02928 261 IARGGLLDYDAVLAALESGHLGGLAIDVAW 290 (347)
T ss_pred CCCccccCHHHHHHHHHcCCeeEEEEccCC
Confidence 54 3 444466666652 33334455543
No 136
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.88 E-value=3.6e-05 Score=69.76 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=27.9
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
-++|+|| |.||++||..|.++|++|++|++.
T Consensus 159 Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~ 192 (301)
T PRK14194 159 GKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSR 192 (301)
T ss_pred CCEEEEECCCCccHHHHHHHHHHCCCEEEEECCC
Confidence 3689999 599999999999999999999754
No 137
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=97.85 E-value=0.00012 Score=67.25 Aligned_cols=110 Identities=19% Similarity=0.119 Sum_probs=77.2
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|+|| |.+|+.+|..+..-|.+|..||+.....+
T Consensus 144 ~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~~----------------------------------------- 182 (311)
T PRK08410 144 KGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNKN----------------------------------------- 182 (311)
T ss_pred CCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccccc-----------------------------------------
Confidence 34789999 99999999999999999999998632100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.+ +. ..++++.++.||+|+.++|-..+-+.-+=++..+.++++++++
T Consensus 183 -----------------~~--------------~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lI- 229 (311)
T PRK08410 183 -----------------EE--------------YE-RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILI- 229 (311)
T ss_pred -----------------cC--------------ce-eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEE-
Confidence 00 11 2478888999999999999877644333355666789999987
Q ss_pred cCC-C--CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 170 STS-S--FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 170 ~tS-t--~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
|++ + +.-+.+.+.+.. +.. .+...+.
T Consensus 230 N~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~ 259 (311)
T PRK08410 230 NVGRGGIVNEKDLAKALDEKDIY-AGLDVLE 259 (311)
T ss_pred ECCCccccCHHHHHHHHHcCCeE-EEEecCC
Confidence 665 2 444566666653 334 5665554
No 138
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=97.84 E-value=7.4e-05 Score=67.77 Aligned_cols=37 Identities=19% Similarity=0.138 Sum_probs=33.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
-++|+|+ |.||+.+|..+...|++|++++|+++...+
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~ 189 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLAR 189 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 3689999 999999999999999999999999876544
No 139
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=97.84 E-value=0.00021 Score=65.91 Aligned_cols=113 Identities=14% Similarity=0.011 Sum_probs=76.3
Q ss_pred CccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.-++|+|| |.+|+.+|..+. .-|.+|..||+....-.. ..
T Consensus 144 ~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~--~~----------------------------------- 186 (323)
T PRK15409 144 HHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAE--ER----------------------------------- 186 (323)
T ss_pred CCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhH--Hh-----------------------------------
Confidence 34789999 999999999987 789999999986422100 00
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
.| ... .++++.+++||+|+.++|-+.+-+.-+=++....++++++++
T Consensus 187 ------------------~~--------------~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lI 233 (323)
T PRK15409 187 ------------------FN--------------ARY-CDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFI 233 (323)
T ss_pred ------------------cC--------------cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEE
Confidence 01 122 478888999999999999887654333355667789999987
Q ss_pred ecCCC---CCHHHHHhhcCC-CCceeeeeec
Q psy13746 169 SSTSS---FLPSVLSEHSTH-RSQFIVAHPV 195 (294)
Q Consensus 169 s~tSt---~~~~~ia~~l~~-~~~~ig~h~~ 195 (294)
|++- +.-+.+.+.+.. +....+...|
T Consensus 234 -N~aRG~vVde~AL~~AL~~g~i~gAaLDVf 263 (323)
T PRK15409 234 -NAGRGPVVDENALIAALQKGEIHAAGLDVF 263 (323)
T ss_pred -ECCCccccCHHHHHHHHHcCCeeEEEeecC
Confidence 6662 444466666653 2233344443
No 140
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.82 E-value=0.00013 Score=66.79 Aligned_cols=39 Identities=26% Similarity=0.351 Sum_probs=33.7
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~~~~ 52 (294)
+||+|| |.+|+++|..++..| ++|.++|++++.++....
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~ 43 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEAL 43 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHh
Confidence 379999 999999999999999 689999999988665443
No 141
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=97.78 E-value=0.00013 Score=69.38 Aligned_cols=100 Identities=23% Similarity=0.237 Sum_probs=72.7
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
.-++|||| |.+|+.+|..+...|.+|..||+.+....
T Consensus 150 ~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~----------------------------------------- 188 (409)
T PRK11790 150 RGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL----------------------------------------- 188 (409)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc-----------------------------------------
Confidence 34689999 99999999999999999999998632100
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+ ......++++.++.||+|+.++|-..+-+.-+=++....++++++++
T Consensus 189 ------------------~-------------~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lI- 236 (409)
T PRK11790 189 ------------------G-------------NARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILI- 236 (409)
T ss_pred ------------------C-------------CceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEE-
Confidence 0 01234578899999999999999877644333355667789999987
Q ss_pred cCCC---CCHHHHHhhcC
Q psy13746 170 STSS---FLPSVLSEHST 184 (294)
Q Consensus 170 ~tSt---~~~~~ia~~l~ 184 (294)
|++. +.-+.+.+.+.
T Consensus 237 N~aRG~~vde~aL~~aL~ 254 (409)
T PRK11790 237 NASRGTVVDIDALADALK 254 (409)
T ss_pred ECCCCcccCHHHHHHHHH
Confidence 6663 34445666554
No 142
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.74 E-value=0.00034 Score=56.65 Aligned_cols=36 Identities=28% Similarity=0.521 Sum_probs=31.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
+||+|| |.+|+.+|..+...|. ++.++|++++.++.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g 41 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEG 41 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCccccee
Confidence 489999 8999999999999875 89999999886553
No 143
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.72 E-value=0.00031 Score=57.05 Aligned_cols=112 Identities=22% Similarity=0.211 Sum_probs=70.1
Q ss_pred eEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENA 93 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~ 93 (294)
|+|+ |.||.-+|..|.++|++|+++++.+ .++...+. |+.+...+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~-----------------------g~~~~~~~--------- 47 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQ-----------------------GLTITGPD--------- 47 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHH-----------------------CEEEEETT---------
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhe-----------------------eEEEEecc---------
Confidence 6788 9999999999999999999999998 66543321 11111100
Q ss_pred HHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCC
Q psy13746 94 KNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSS 173 (294)
Q Consensus 94 ~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt 173 (294)
| +..........+..+....+|+||.|+.... -..++..+.+++++++.|++.--+
T Consensus 48 --------------~--------~~~~~~~~~~~~~~~~~~~~D~viv~vKa~~--~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 48 --------------G--------DETVQPPIVISAPSADAGPYDLVIVAVKAYQ--LEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp --------------E--------EEEEEEEEEESSHGHHHSTESEEEE-SSGGG--HHHHHHHHCTGEETTEEEEEESSS
T ss_pred --------------c--------ceecccccccCcchhccCCCcEEEEEecccc--hHHHHHHHhhccCCCcEEEEEeCC
Confidence 0 0000011112223224689999999997654 346888899999998766655555
Q ss_pred CCH-HHHHhhcC
Q psy13746 174 FLP-SVLSEHST 184 (294)
Q Consensus 174 ~~~-~~ia~~l~ 184 (294)
+.. +.+++.++
T Consensus 104 ~g~~~~l~~~~~ 115 (151)
T PF02558_consen 104 MGNEEVLAEYFP 115 (151)
T ss_dssp SSHHHHHHCHST
T ss_pred CCcHHHHHHHcC
Confidence 553 35555553
No 144
>PRK06932 glycerate dehydrogenase; Provisional
Probab=97.70 E-value=0.00044 Score=63.50 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=75.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.+|+.+|..+..-|.+|+.||+.... . ..
T Consensus 147 gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~-----~-~~----------------------------------- 185 (314)
T PRK06932 147 GSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS-----V-CR----------------------------------- 185 (314)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc-----c-cc-----------------------------------
Confidence 3689999 999999999999999999999975321 0 00
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
. ...++++.++.||+|+.++|-..+-+.-+=++....++++++++ |
T Consensus 186 --------------------------------~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lI-N 231 (314)
T PRK06932 186 --------------------------------E-GYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLI-N 231 (314)
T ss_pred --------------------------------c-ccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEE-E
Confidence 0 02468888999999999999876643333355666789999987 6
Q ss_pred CCC---CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TSS---FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tSt---~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
++- +.-+.+.+.+. ......+...|.
T Consensus 232 ~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~ 261 (314)
T PRK06932 232 TGRGPLVDEQALLDALENGKIAGAALDVLV 261 (314)
T ss_pred CCCccccCHHHHHHHHHcCCccEEEEecCC
Confidence 652 44556666665 233334455443
No 145
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.70 E-value=0.0003 Score=64.64 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=32.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
+||+|| |.+|..+|..++..|. ++.++|++++.++.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g 46 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEG 46 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHH
Confidence 699999 9999999999999887 89999999887654
No 146
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.70 E-value=0.0003 Score=64.05 Aligned_cols=37 Identities=16% Similarity=0.106 Sum_probs=33.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
-++|.|+ |.+|+.++..+...|.+|+++|+++++.+.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~ 190 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLAR 190 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 3689999 999999999999999999999999876544
No 147
>PRK06487 glycerate dehydrogenase; Provisional
Probab=97.70 E-value=0.00037 Score=64.10 Aligned_cols=108 Identities=15% Similarity=0.096 Sum_probs=75.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|| |.+|+.+|..+...|.+|..||+.... . .
T Consensus 148 gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~----~------------------------------------- 185 (317)
T PRK06487 148 GKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A----R------------------------------------- 185 (317)
T ss_pred CCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c----c-------------------------------------
Confidence 3689999 999999999999999999999986311 0 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
.. ..++++.++.||+|+.++|-+.+-+.-+=++....++++++++ |
T Consensus 186 --------------------------------~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lI-N 231 (317)
T PRK06487 186 --------------------------------PD-RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLI-N 231 (317)
T ss_pred --------------------------------cc-ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEE-E
Confidence 00 1367888999999999999877654333355666789999987 6
Q ss_pred CC-C--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TS-S--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
++ + +.-+.+.+.+. .+....+...|.
T Consensus 232 ~aRG~vVde~AL~~AL~~g~i~gAaLDVf~ 261 (317)
T PRK06487 232 TARGGLVDEQALADALRSGHLGGAATDVLS 261 (317)
T ss_pred CCCccccCHHHHHHHHHcCCeeEEEeecCC
Confidence 66 2 44446666665 233334454443
No 148
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=97.68 E-value=0.0001 Score=69.27 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=72.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|+|| |.||+.+|..+...|++|.+||+.....+
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~~------------------------------------------- 153 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEAE------------------------------------------- 153 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccccc-------------------------------------------
Confidence 689999 99999999999999999999997532100
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH---HHHHHH-HHHhcccCCCeEE
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ---IKHQVY-RAIDIFMSSNTIL 167 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~---~k~~~~-~~l~~~~~~~~ii 167 (294)
+ .....++++.+++||+|+.++|-..+ -...++ ++....+++++++
T Consensus 154 ----------------~--------------~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gail 203 (381)
T PRK00257 154 ----------------G--------------DGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWL 203 (381)
T ss_pred ----------------c--------------CccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEE
Confidence 0 00124678888999999999997542 122333 3455668999998
Q ss_pred EecCCC---CCHHHHHhhcC-CCCceeeeeec
Q psy13746 168 SSSTSS---FLPSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 168 ~s~tSt---~~~~~ia~~l~-~~~~~ig~h~~ 195 (294)
+ |+|. +.-..+.+.+. .+....+...+
T Consensus 204 I-N~aRG~vVde~AL~~aL~~g~i~~a~LDV~ 234 (381)
T PRK00257 204 I-NASRGAVVDNQALREALLSGEDLDAVLDVW 234 (381)
T ss_pred E-ECCCCcccCHHHHHHHHHhCCCcEEEEeCC
Confidence 7 5653 33445555554 23333444444
No 149
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.68 E-value=0.0023 Score=57.61 Aligned_cols=143 Identities=10% Similarity=0.098 Sum_probs=78.4
Q ss_pred eccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCC-HHHHHhhcCCCCceeeeeec------CC
Q psy13746 125 GTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL-PSVLSEHSTHRSQFIVAHPV------NP 197 (294)
Q Consensus 125 ~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~-~~~ia~~l~~~~~~ig~h~~------~p 197 (294)
.++++++ +.++|+||.|++... -..+++.+.+++.++++|++..-++. .+.+.+.++. .+++++-.. .|
T Consensus 50 ~~~~~~~-~~~~D~iiv~vKs~~--~~~~l~~l~~~l~~~~~iv~~qNG~g~~~~l~~~~~~-~~v~~g~~~~~~~~~~p 125 (293)
T TIGR00745 50 AATSPEE-LPPADLVIITVKAYQ--TEEAAALLLPLIGKNTKVLFLQNGLGHEERLRELLPA-RRILGGVVTHGAVREEP 125 (293)
T ss_pred cccChhh-cCCCCEEEEeccchh--HHHHHHHhHhhcCCCCEEEEccCCCCCHHHHHHHhCc-cCEEEEEEEEeeEEcCC
Confidence 3455664 679999999998753 35678889998888887775544553 3345555432 234332221 12
Q ss_pred CC---CC-CeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccccc-----cHH------------------------H
Q psy13746 198 PY---FI-PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRG-----FAL------------------------N 244 (294)
Q Consensus 198 ~~---~~-~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~g-----~v~------------------------n 244 (294)
-. .+ ..+.+ +......+..+.+.++|+..|...... .|-.+ ++. -
T Consensus 126 g~v~~~~~~~~~i-G~~~~~~~~~~~l~~~l~~~~~~~~~~-~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~ 203 (293)
T TIGR00745 126 GVVHHAGLGATKI-GDYVGENEAVEALAELLNEAGIPAELH-GDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEAR 203 (293)
T ss_pred cEEEEeccccEEE-ecCCCchHHHHHHHHHHHhCCCCCEec-chHHHHHHHHHhheechhHHHHHHCCccceeccChhHH
Confidence 10 00 11112 221112245666777777777655443 23211 111 1
Q ss_pred HHHHHHHHHHHHHHHcCCCC--HHHHHHHHH
Q psy13746 245 RIQFAVLNECYHLVHDGVLS--AKDIDRVMS 273 (294)
Q Consensus 245 ri~~a~~~Ea~~l~~~~~~~--~~~id~a~~ 273 (294)
+++..++.|...+++..|++ .+.+.+.+.
T Consensus 204 ~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 234 (293)
T TIGR00745 204 ELLRRLMDEVVRVARAEGVDLPDDEVEELVR 234 (293)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 23345688999999988765 333444443
No 150
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=97.66 E-value=0.00027 Score=65.10 Aligned_cols=112 Identities=24% Similarity=0.137 Sum_probs=79.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-+++||| |.+|+++|+.+..-|.+|..||+++. .+ .++.
T Consensus 146 gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~-~~~~------------------------------------- 186 (324)
T COG1052 146 GKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PE-AEKE------------------------------------- 186 (324)
T ss_pred CCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hH-HHhh-------------------------------------
Confidence 4789999 99999999999988899999999985 22 1110
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+ ..+..+ +.+.++.+|+|+...|-..+-..-+=++..+.++++.+|+ |
T Consensus 187 -----------------~-------------~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lV-N 234 (324)
T COG1052 187 -----------------L-------------GARYVD-LDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILV-N 234 (324)
T ss_pred -----------------c-------------Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEE-E
Confidence 0 013344 8889999999999999987754444456677799999986 7
Q ss_pred CCC---CCHHHHHhhcC-CCCceeeeeec
Q psy13746 171 TSS---FLPSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 171 tSt---~~~~~ia~~l~-~~~~~ig~h~~ 195 (294)
++- +.-..+.+.+. ....-.|...|
T Consensus 235 taRG~~VDe~ALi~AL~~g~i~gaglDV~ 263 (324)
T COG1052 235 TARGGLVDEQALIDALKSGKIAGAGLDVF 263 (324)
T ss_pred CCCccccCHHHHHHHHHhCCcceEEeeec
Confidence 773 44445666664 23344455444
No 151
>KOG3124|consensus
Probab=97.63 E-value=0.00061 Score=59.76 Aligned_cols=102 Identities=16% Similarity=0.130 Sum_probs=79.9
Q ss_pred ccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCCCCceeeeeecCCCCCCCeEE
Q psy13746 126 TPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPLVE 205 (294)
Q Consensus 126 ~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~~~~lve 205 (294)
.++ .+.++.+|+++.|+-... ...++.++...+..+.||+|..-+.+++.++..+..+.|++...|..|...+....
T Consensus 53 ~~n-~~~~~~s~v~~~svKp~~--i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~~l~~~~rviRvmpNtp~~v~eg~s 129 (267)
T KOG3124|consen 53 FTN-LEVLQASDVVFLSVKPQV--IESVLSEIKPKVSKGKIIVSVAAGKTLSSLESKLSPPTRVIRVMPNTPSVVGEGAS 129 (267)
T ss_pred ech-HHHHhhccceeEeecchh--HHHHhhcCccccccceEEEEEeecccHHHHHHhcCCCCceEEecCCChhhhhcCcE
Confidence 344 557889999999986543 44666666665666778988888999999988888778899999999987765555
Q ss_pred -EecCCCCCHHHHHHHHHHHHHcCCe
Q psy13746 206 -IVPAAWTSERVITRTREIMTEIGMK 230 (294)
Q Consensus 206 -iv~g~~t~~e~~~~~~~ll~~lG~~ 230 (294)
+..+.....+..+.+++++..+|.-
T Consensus 130 v~~~g~~~~~~D~~l~~~ll~~vG~~ 155 (267)
T KOG3124|consen 130 VYAIGCHATNEDLELVEELLSAVGLC 155 (267)
T ss_pred EEeeCCCcchhhHHHHHHHHHhcCcc
Confidence 5566677788889999999999964
No 152
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.61 E-value=0.00016 Score=65.60 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=27.0
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
-++|+|| |.||++||..|.++|++|++|+
T Consensus 158 Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 158 GLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 4789999 8999999999999999999995
No 153
>PRK15076 alpha-galactosidase; Provisional
Probab=97.61 E-value=0.00032 Score=67.16 Aligned_cols=40 Identities=15% Similarity=0.090 Sum_probs=29.8
Q ss_pred cceEEE--ccccHHHHH--HHH----HCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAM--IFA----SAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~--~~~----~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+||+|| |.||...+. .++ ..|.+|+++|+++++++.+...
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l 49 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV 49 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH
Confidence 589999 888866555 333 2467999999999998765443
No 154
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.60 E-value=0.00047 Score=62.01 Aligned_cols=40 Identities=20% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCccceEEE--ccccHHHHHHHHHC--CCeEE-EEeCChHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASA--GYKVS-LYDVLSEQIENA 50 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~--G~~V~-~~d~~~~~~~~~ 50 (294)
|...+|+|| |.||+.++..+... |+++. +||+++++.+..
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~ 48 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADF 48 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHH
Confidence 556799999 99999999999873 78876 899998876543
No 155
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.60 E-value=0.00051 Score=62.96 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=31.6
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~ 48 (294)
+||+|| |.+|.++|..++..| .+|.++|++++.++
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~ 39 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAE 39 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhh
Confidence 379999 999999999999999 58999999988765
No 156
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=97.59 E-value=0.00016 Score=67.87 Aligned_cols=109 Identities=16% Similarity=0.124 Sum_probs=71.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|||| |.||+.+|..+...|.+|.+||+.... .
T Consensus 116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~--~----------------------------------------- 152 (378)
T PRK15438 116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRAD--R----------------------------------------- 152 (378)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCcccc--c-----------------------------------------
Confidence 3689999 999999999999999999999964211 0
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH---HHHHHH-HHHhcccCCCeE
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ---IKHQVY-RAIDIFMSSNTI 166 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~---~k~~~~-~~l~~~~~~~~i 166 (294)
+ . .....++++.+++||+|+.++|-..+ -...++ ++....++++++
T Consensus 153 -----------------~--~-----------~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gai 202 (378)
T PRK15438 153 -----------------G--D-----------EGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAI 202 (378)
T ss_pred -----------------c--c-----------ccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcE
Confidence 0 0 00124788888999999999986542 011233 445566889999
Q ss_pred EEecCCC---CCHHHHHhhcC-CCCceeeeeec
Q psy13746 167 LSSSTSS---FLPSVLSEHST-HRSQFIVAHPV 195 (294)
Q Consensus 167 i~s~tSt---~~~~~ia~~l~-~~~~~ig~h~~ 195 (294)
++ |+|- +.-+.+.+.+. .+....+...+
T Consensus 203 lI-N~aRG~vVDe~AL~~aL~~g~~~ga~LDV~ 234 (378)
T PRK15438 203 LI-NACRGAVVDNTALLTCLNEGQKLSVVLDVW 234 (378)
T ss_pred EE-ECCCchhcCHHHHHHHHHhCCCcEEEEecC
Confidence 87 6662 34445655554 23333444444
No 157
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=97.57 E-value=0.0032 Score=57.69 Aligned_cols=200 Identities=16% Similarity=0.114 Sum_probs=113.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||.|+ |.||+-+|..|+++|+.|+++.|++. +++.++. |+.+.-.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~-----------------------GL~i~~~~------- 49 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKK-----------------------GLRIEDEG------- 49 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhC-----------------------CeEEecCC-------
Confidence 589999 99999999999999999999999886 5544331 11110000
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
+ .... ...+.+..+....+|+||.++-.-. ..+++..+.+.++++++|.+.-
T Consensus 50 ----------------~---------~~~~-~~~~~~~~~~~~~~Dlviv~vKa~q--~~~al~~l~~~~~~~t~vl~lq 101 (307)
T COG1893 50 ----------------G---------NFTT-PVVAATDAEALGPADLVIVTVKAYQ--LEEALPSLAPLLGPNTVVLFLQ 101 (307)
T ss_pred ----------------C---------cccc-ccccccChhhcCCCCEEEEEecccc--HHHHHHHhhhcCCCCcEEEEEe
Confidence 0 0000 1112222335679999999986533 3578899999999998766444
Q ss_pred CCCC-HHHHHhhcCCCCceeeeeecCCCCC--------C-CeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEccccc--
Q psy13746 172 SSFL-PSVLSEHSTHRSQFIVAHPVNPPYF--------I-PLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIR-- 239 (294)
Q Consensus 172 St~~-~~~ia~~l~~~~~~ig~h~~~p~~~--------~-~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~~-- 239 (294)
=++. .+.+....++..-+.|.-+...... + .-+.+-.-....++.++.+.+.|+.-|....+. ++--
T Consensus 102 NG~g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~~~~~a~~~~~~~-~di~~~ 180 (307)
T COG1893 102 NGLGHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAELFKEAGLEVELH-PDILAA 180 (307)
T ss_pred CCCcHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHHHHHhCCCCeEEc-HHHHHH
Confidence 4443 2345444432212333333322111 1 111122222224467788888887777766554 3321
Q ss_pred ---ccHHH------------------------HHHHHHHHHHHHHHHcCC--CCHHHHHHHHH
Q psy13746 240 ---GFALN------------------------RIQFAVLNECYHLVHDGV--LSAKDIDRVMS 273 (294)
Q Consensus 240 ---g~v~n------------------------ri~~a~~~Ea~~l~~~~~--~~~~~id~a~~ 273 (294)
.++.| .++...+.|....+...+ .+.+.++..+.
T Consensus 181 ~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~~~v~~ 243 (307)
T COG1893 181 IWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPEEVVERVLA 243 (307)
T ss_pred HHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 11222 122346788888888887 34444455443
No 158
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.56 E-value=0.00055 Score=61.38 Aligned_cols=37 Identities=27% Similarity=0.313 Sum_probs=30.3
Q ss_pred cceEEE--ccccHHHHHHHHHC--CCe-EEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASA--GYK-VSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~--G~~-V~~~d~~~~~~~~~ 50 (294)
+||+|| |.||+.++..+.+. +++ +.++|+++++.+.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~ 43 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENL 43 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHH
Confidence 589999 99999999999876 455 66899998876543
No 159
>PLN02306 hydroxypyruvate reductase
Probab=97.49 E-value=0.00069 Score=63.92 Aligned_cols=129 Identities=18% Similarity=0.147 Sum_probs=78.4
Q ss_pred CccceEEE--ccccHHHHHHHH-HCCCeEEEEeCChHH-HHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFA-SAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~-~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
.-++|+|| |.+|+.+|..+. .-|.+|+.||+.+.. .....+...
T Consensus 164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~-------------------------------- 211 (386)
T PLN02306 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG-------------------------------- 211 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc--------------------------------
Confidence 34789999 999999999986 679999999998642 111000000
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
..+ ...+... .......++++.++.||+|+.++|-+.+-+.-+=++..+.+++++++
T Consensus 212 -----------~~l---~~~~~~~---------~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~l 268 (386)
T PLN02306 212 -----------QFL---KANGEQP---------VTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVL 268 (386)
T ss_pred -----------ccc---ccccccc---------ccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEE
Confidence 000 0000000 01122458899999999999999987665433335666778999998
Q ss_pred EecCCC---CCHHHHHhhcCC-CCceeeeeecC
Q psy13746 168 SSSTSS---FLPSVLSEHSTH-RSQFIVAHPVN 196 (294)
Q Consensus 168 ~s~tSt---~~~~~ia~~l~~-~~~~ig~h~~~ 196 (294)
+ |++- +.-..+.+.+.. +....++..|.
T Consensus 269 I-N~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~ 300 (386)
T PLN02306 269 V-NASRGPVIDEVALVEHLKANPMFRVGLDVFE 300 (386)
T ss_pred E-ECCCccccCHHHHHHHHHhCCeeEEEEeCCC
Confidence 7 6662 344456666642 23334444443
No 160
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.48 E-value=0.00048 Score=63.25 Aligned_cols=93 Identities=14% Similarity=0.090 Sum_probs=63.9
Q ss_pred CccceEEE--ccccHHHHHHHHH-C-CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-A-GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~-G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++|+|| |.||+.++..++. . +.+|++|+|++++.++..+.+.
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~-------------------------------- 171 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELR-------------------------------- 171 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHH--------------------------------
Confidence 45789999 9999999986654 4 4789999999998776654322
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.|. .+....+..+++++||+|+.|.+... .++.. +.+++++.|
T Consensus 172 ------------------~~g~------------~~~~~~~~~~av~~aDIVi~aT~s~~----pvl~~--~~l~~g~~i 215 (314)
T PRK06141 172 ------------------AQGF------------DAEVVTDLEAAVRQADIISCATLSTE----PLVRG--EWLKPGTHL 215 (314)
T ss_pred ------------------hcCC------------ceEEeCCHHHHHhcCCEEEEeeCCCC----CEecH--HHcCCCCEE
Confidence 0110 13445778888999999999888652 22221 356788876
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
...++
T Consensus 216 ~~ig~ 220 (314)
T PRK06141 216 DLVGN 220 (314)
T ss_pred EeeCC
Confidence 54443
No 161
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.47 E-value=0.0023 Score=54.89 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=35.1
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
+.-++|+|+ |.||+.+|+.|.+.|++|+++|+++++++...
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~ 68 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAA 68 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 334689999 99999999999999999999999987766543
No 162
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.46 E-value=0.00077 Score=61.53 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=30.4
Q ss_pred eEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQIENA 50 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~~~~ 50 (294)
|+|| |.+|+++|..++..| .+++++|++++.++..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~ 39 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGD 39 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHH
Confidence 5788 999999999999988 6899999998876543
No 163
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.46 E-value=0.001 Score=61.07 Aligned_cols=35 Identities=23% Similarity=0.465 Sum_probs=30.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
.||+|| |.+|+++|..++..|. ++.++|++++.++
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~ 42 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLK 42 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHH
Confidence 499999 9999999999998875 7999999987654
No 164
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.46 E-value=0.00036 Score=62.82 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=25.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEE
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLY 40 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~ 40 (294)
++|+|| |.||++||..|.++|+.|++|
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~ 188 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLT 188 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEE
Confidence 689999 899999999999999999999
No 165
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.45 E-value=0.0013 Score=58.27 Aligned_cols=113 Identities=11% Similarity=0.090 Sum_probs=80.3
Q ss_pred CeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCC-CCceeeeeecCCCC-
Q psy13746 122 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH-RSQFIVAHPVNPPY- 199 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~-~~~~ig~h~~~p~~- 199 (294)
.+++++|-.+|++++|++|.=+|---. -..+.+++.+++++++||+ ++.|+++..+...+.. ..+-+|...|.|..
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~-t~~Iikki~~~ipEgAII~-~tCTIpt~~ly~~le~l~R~DvgIsS~HPaaV 205 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGM-QPDIIEKFADDIKEGAIVT-HACTIPTTKFAKIFKDLGRDDLNVTSYHPGAV 205 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCC-chHHHHHHHhhCCCCCEEe-ccccCCHHHHHHHHHHhCcccCCeeccCCCCC
Confidence 355666666699999999999987531 1367889999999999986 7888887766655542 23456666666542
Q ss_pred ---CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 200 ---FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 200 ---~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
.++.. + .-.-.++|+++++.++.+..|+.++.++.+-
T Consensus 206 Pgt~Gq~~-i-~egyAtEEqI~klveL~~sa~k~ay~~PA~l 245 (342)
T PRK00961 206 PEMKGQVY-I-AEGYADEEAVEKLYEIGKKARGNAFKMPANL 245 (342)
T ss_pred CCCCCcee-c-ccccCCHHHHHHHHHHHHHhCCCeeecchhh
Confidence 12221 2 2234688999999999999999999986553
No 166
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.39 E-value=0.002 Score=57.25 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=80.0
Q ss_pred CeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcCC-CCceeeeeecCCCC-
Q psy13746 122 LISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTH-RSQFIVAHPVNPPY- 199 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~~-~~~~ig~h~~~p~~- 199 (294)
.+++++|-.+|++++|++|.=+|---. -..+.+++.+++++++||+ ++.|+++..+...+.. ..+-+|...|.|..
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~-q~~Iikkii~~lpEgAII~-~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaaV 203 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNK-QPDIIKKFIDDIPEGAIVT-HACTIPTTKFAKIFEDLGREDLNVTSYHPGCV 203 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCC-chHHHHHHHhhCCCCCEEe-ccccCChHHHHHHHHhhCcccCCeeccCCCCC
Confidence 355666666799999999999987531 1367889999999999986 7888887755554431 22456665665531
Q ss_pred --CCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEEcccc
Q psy13746 200 --FIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEI 238 (294)
Q Consensus 200 --~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v~~~~ 238 (294)
.-.-+-++.+ -.++|.++++.++.+..|+.++.++.+-
T Consensus 204 Pgt~~q~Yi~eg-yAtEEqI~klveL~~sa~k~ay~~PA~L 243 (340)
T TIGR01723 204 PEMKGQVYIAEG-YASEEAVNKLYELGKKARGKAFKMPANL 243 (340)
T ss_pred CCCCCceEeecc-cCCHHHHHHHHHHHHHhCCCeeecchhh
Confidence 1122223444 4688999999999999999999986443
No 167
>PRK04148 hypothetical protein; Provisional
Probab=97.39 E-value=0.0031 Score=50.44 Aligned_cols=92 Identities=16% Similarity=0.139 Sum_probs=65.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|.+| | -|..+|..|++.|++|+..|++++.++.+++.. ..+...|
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~-----------------------~~~v~dD------- 66 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG-----------------------LNAFVDD------- 66 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC-----------------------CeEEECc-------
Confidence 578888 8 888899999999999999999999888765431 1111111
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
+ +..+++ .-+++|+|..+-|.. + .+.-+.++.+.+..+.+|..-+
T Consensus 67 -------------------------------l-f~p~~~-~y~~a~liysirpp~-e-l~~~~~~la~~~~~~~~i~~l~ 111 (134)
T PRK04148 67 -------------------------------L-FNPNLE-IYKNAKLIYSIRPPR-D-LQPFILELAKKINVPLIIKPLS 111 (134)
T ss_pred -------------------------------C-CCCCHH-HHhcCCEEEEeCCCH-H-HHHHHHHHHHHcCCCEEEEcCC
Confidence 1 233454 468999999988864 3 3455667888888888886443
No 168
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.36 E-value=0.00065 Score=63.75 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=36.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~ 53 (294)
+++|.|| |.+|+.+|..|++.| ++|++.||++++++++.+.
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~ 44 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAEL 44 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhh
Confidence 3688899 999999999999999 8999999999999887654
No 169
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.35 E-value=0.00068 Score=54.40 Aligned_cols=41 Identities=22% Similarity=0.165 Sum_probs=35.7
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCe-EEEEeCChHHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKNT 53 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~-V~~~d~~~~~~~~~~~~ 53 (294)
-+++.|| |-+|++++..|+..|.+ |++++|+.++.++..+.
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~ 55 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEE 55 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHH
Confidence 3689999 99999999999999986 99999999987766543
No 170
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.34 E-value=0.0013 Score=60.40 Aligned_cols=39 Identities=21% Similarity=0.178 Sum_probs=33.0
Q ss_pred ccceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAK 51 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~ 51 (294)
-++|+|+ |.||+.++..+...| .+|+++|+++++.....
T Consensus 178 ~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la 219 (311)
T cd05213 178 GKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELA 219 (311)
T ss_pred CCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHH
Confidence 3689999 999999999999866 68999999998765543
No 171
>PLN02602 lactate dehydrogenase
Probab=97.31 E-value=0.0022 Score=59.76 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=31.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
+||+|| |.+|+.+|..++..|. ++.++|++++.++-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g 77 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRG 77 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhH
Confidence 599999 9999999999998875 79999999876543
No 172
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.25 E-value=0.0022 Score=58.70 Aligned_cols=113 Identities=13% Similarity=0.149 Sum_probs=70.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
+||+|+ |.||+-+|..|+++|++|++++|.++.++...+. .|+.+. +
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~----------------------~Gl~i~--~------- 51 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA----------------------GGLTLV--E------- 51 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc----------------------CCeEEe--e-------
Confidence 589999 9999999999999999999999987666544321 011100 0
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecC
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSST 171 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~t 171 (294)
.| . ...-+... .+.+ ....+|+||.|+-... -.+.++++.+.+.++++|++.-
T Consensus 52 ---------------~g----~----~~~~~~~~-~~~~-~~~~~D~viv~vK~~~--~~~al~~l~~~l~~~t~vv~lQ 104 (305)
T PRK05708 52 ---------------QG----Q----ASLYAIPA-ETAD-AAEPIHRLLLACKAYD--AEPAVASLAHRLAPGAELLLLQ 104 (305)
T ss_pred ---------------CC----c----ceeeccCC-CCcc-cccccCEEEEECCHHh--HHHHHHHHHhhCCCCCEEEEEe
Confidence 00 0 00000111 1112 2468999999986543 2367788999998888776544
Q ss_pred CCCCH-HHHHhhcC
Q psy13746 172 SSFLP-SVLSEHST 184 (294)
Q Consensus 172 St~~~-~~ia~~l~ 184 (294)
=++.. +.+++.+.
T Consensus 105 NGv~~~e~l~~~~~ 118 (305)
T PRK05708 105 NGLGSQDAVAARVP 118 (305)
T ss_pred CCCCCHHHHHHhCC
Confidence 45543 45555554
No 173
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.24 E-value=0.0015 Score=59.82 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=27.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~ 44 (294)
+||+|+ |.+|..+|..++..|+ +|+++|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~ 36 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPK 36 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcc
Confidence 478999 8999999999999987 599999964
No 174
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=97.24 E-value=0.0029 Score=60.12 Aligned_cols=38 Identities=18% Similarity=0.128 Sum_probs=33.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++|+|+ |.+|+.+|..+...|.+|+++|+++.+++.+.
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~ 242 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAA 242 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHH
Confidence 578888 99999999999999999999999998876553
No 175
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.23 E-value=0.0016 Score=62.61 Aligned_cols=36 Identities=14% Similarity=0.048 Sum_probs=32.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
-++|+|+ |.+|+.+|..+...|.+|+++|+++....
T Consensus 254 GKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~ 291 (476)
T PTZ00075 254 GKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICAL 291 (476)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHH
Confidence 3688999 99999999999999999999999987643
No 176
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.23 E-value=0.0018 Score=59.72 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=65.7
Q ss_pred CCccceEEE--ccccHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~--~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
...++++|| |.||+..+..++. ...+|.+||+++++.+...+.+.
T Consensus 126 ~~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~------------------------------- 174 (325)
T TIGR02371 126 KDSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRAS------------------------------- 174 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH-------------------------------
Confidence 345789999 9999997666654 45699999999999876554322
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
+.|. .+...++.++++++||+|+.|+|... .++. .+++++++.
T Consensus 175 -------------------~~g~------------~v~~~~~~~eav~~aDiVitaT~s~~----P~~~--~~~l~~g~~ 217 (325)
T TIGR02371 175 -------------------DYEV------------PVRAATDPREAVEGCDILVTTTPSRK----PVVK--ADWVSEGTH 217 (325)
T ss_pred -------------------hhCC------------cEEEeCCHHHHhccCCEEEEecCCCC----cEec--HHHcCCCCE
Confidence 0110 13456788899999999999998753 2331 234688888
Q ss_pred EEecCC
Q psy13746 167 LSSSTS 172 (294)
Q Consensus 167 i~s~tS 172 (294)
|....|
T Consensus 218 v~~vGs 223 (325)
T TIGR02371 218 INAIGA 223 (325)
T ss_pred EEecCC
Confidence 765554
No 177
>PLN02494 adenosylhomocysteinase
Probab=97.22 E-value=0.0036 Score=60.09 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=32.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
++|+|+ |.+|+.+|..+...|.+|+++|+++.+...
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~e 292 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQ 292 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHH
Confidence 678888 999999999999999999999999876443
No 178
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=97.22 E-value=0.0016 Score=62.03 Aligned_cols=145 Identities=16% Similarity=0.191 Sum_probs=90.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCC------hHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeec
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVL------SEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDV 85 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~ 85 (294)
++|+|| |.+|+.-|..+...|++|++--|. ...-+++.+
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~--------------------------------- 83 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATE--------------------------------- 83 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHh---------------------------------
Confidence 789999 999999999999999999944433 333322211
Q ss_pred chHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCe
Q psy13746 86 LSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNT 165 (294)
Q Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ 165 (294)
.| +.+ .++.++++.||+|+..+|+.. ...+++++.+.++++.
T Consensus 84 ---------------------dG--------------F~v-~~~~Ea~~~ADvVviLlPDt~--q~~v~~~i~p~LK~Ga 125 (487)
T PRK05225 84 ---------------------NG--------------FKV-GTYEELIPQADLVINLTPDKQ--HSDVVRAVQPLMKQGA 125 (487)
T ss_pred ---------------------cC--------------Ccc-CCHHHHHHhCCEEEEcCChHH--HHHHHHHHHhhCCCCC
Confidence 12 222 468889999999999999873 6677899999999999
Q ss_pred EEEecCCCCCHHHHHhhcCCCCceeeeeecCCCC----------CCC-eEEEecCCCCCHHHHHHHHHHHHHcCCe
Q psy13746 166 ILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPY----------FIP-LVEIVPAAWTSERVITRTREIMTEIGMK 230 (294)
Q Consensus 166 ii~s~tSt~~~~~ia~~l~~~~~~ig~h~~~p~~----------~~~-lveiv~g~~t~~e~~~~~~~ll~~lG~~ 230 (294)
.+.. +-+..+..-....+.-..++-+-|-.|-. ..+ ++-+-.-...+....+.+..+...+|..
T Consensus 126 ~L~f-sHGFni~~~~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ 200 (487)
T PRK05225 126 ALGY-SHGFNIVEVGEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAATGGH 200 (487)
T ss_pred EEEe-cCCceeeeCceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchHHHHHHHHHHHhCCC
Confidence 8864 33443321110111111222222322211 011 3333321234556788899999999976
No 179
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.21 E-value=0.0021 Score=60.94 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=32.1
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
-++|+|+ |.+|+.+|+.+...|.+|+++|+++.+..
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~ 232 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRAL 232 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHH
Confidence 3688899 99999999999999999999999997643
No 180
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=97.16 E-value=0.0023 Score=61.02 Aligned_cols=37 Identities=16% Similarity=0.029 Sum_probs=32.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
-++|+|+ |.+|+.+|..+...|.+|+++|+++.+...
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~ 250 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQ 250 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHH
Confidence 3678888 999999999999999999999999877543
No 181
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.12 E-value=0.0034 Score=53.38 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=34.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|+ |.+|+.++..|+..|++|++++|++++++...+.
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~ 71 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADS 71 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 578888 7899999999999999999999998877665543
No 182
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.11 E-value=0.0048 Score=53.95 Aligned_cols=36 Identities=31% Similarity=0.342 Sum_probs=33.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
+++.|+ |.+|+++|..|.+.||+|+++|++++.+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~ 38 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEE 38 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHH
Confidence 468888 999999999999999999999999999876
No 183
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.05 E-value=0.003 Score=52.98 Aligned_cols=30 Identities=30% Similarity=0.434 Sum_probs=27.6
Q ss_pred ceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
+|.|+ |.||+.+|..|++.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 57888 9999999999999998 599999986
No 184
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.05 E-value=0.0016 Score=58.48 Aligned_cols=39 Identities=21% Similarity=0.108 Sum_probs=33.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+++.|+ |.+|++++..++..|++|++++|++++.+...+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~ 158 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAE 158 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 578888 999999999999999999999999887765543
No 185
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.02 E-value=0.005 Score=56.82 Aligned_cols=93 Identities=15% Similarity=0.045 Sum_probs=65.0
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |.+|+..+..++. .+ .+|.+|+|++++.++..+.+..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~------------------------------- 174 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQS------------------------------- 174 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHH-------------------------------
Confidence 34689999 9999988877764 45 4899999999987765544320
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
. .| -.+...++++++++++|+||.|+|... .++. +.+++++.|
T Consensus 175 ------------~------~~------------~~~~~~~~~~~~~~~aDiVi~aT~s~~----p~i~---~~l~~G~hV 217 (325)
T PRK08618 175 ------------K------FN------------TEIYVVNSADEAIEEADIIVTVTNAKT----PVFS---EKLKKGVHI 217 (325)
T ss_pred ------------h------cC------------CcEEEeCCHHHHHhcCCEEEEccCCCC----cchH---HhcCCCcEE
Confidence 0 01 012345778888999999999999753 3333 456888887
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 218 ~~iGs 222 (325)
T PRK08618 218 NAVGS 222 (325)
T ss_pred EecCC
Confidence 65555
No 186
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=97.00 E-value=0.01 Score=59.40 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=66.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
++|.|+ |.+|+.+|+.|.+.|++++++|.|+++++.+++ .|++|+.-|..+...
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-----------------------~g~~v~~GDat~~~~- 456 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRK-----------------------YGYKVYYGDATQLEL- 456 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-----------------------CCCeEEEeeCCCHHH-
Confidence 577777 999999999999999999999999999887654 267777777555331
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhh-hccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRE-CLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~-a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
+++ -+.+||.+|.+++++.+- ..+...+.+..+.-.|++-
T Consensus 457 -------------------------------------L~~agi~~A~~vv~~~~d~~~n-~~i~~~~r~~~p~~~IiaR 497 (601)
T PRK03659 457 -------------------------------------LRAAGAEKAEAIVITCNEPEDT-MKIVELCQQHFPHLHILAR 497 (601)
T ss_pred -------------------------------------HHhcCCccCCEEEEEeCCHHHH-HHHHHHHHHHCCCCeEEEE
Confidence 111 157899999999886532 2333444444455566653
No 187
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=96.98 E-value=0.0027 Score=57.48 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=35.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~ 53 (294)
++|.|+ |.+|++++..++..|. +|+++||++++.+...+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~ 170 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADE 170 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHH
Confidence 689999 9999999999999997 799999999887765543
No 188
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.98 E-value=0.0053 Score=56.13 Aligned_cols=91 Identities=11% Similarity=-0.017 Sum_probs=64.6
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |.+|+..+..++. .+ .+|.+|+|++++.++..+++.
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~-------------------------------- 171 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR-------------------------------- 171 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH--------------------------------
Confidence 34689999 9999999999875 56 479999999998776654332
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.+. .+. .++.+++++++|+||.|+|... .++.. .+++++.|
T Consensus 172 ------------------~~~~------------~~~-~~~~~~av~~aDiVitaT~s~~----Pl~~~---~~~~g~hi 213 (304)
T PRK07340 172 ------------------ALGP------------TAE-PLDGEAIPEAVDLVVTATTSRT----PVYPE---AARAGRLV 213 (304)
T ss_pred ------------------hcCC------------eeE-ECCHHHHhhcCCEEEEccCCCC----ceeCc---cCCCCCEE
Confidence 0010 012 3677788999999999998754 34432 36788877
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 214 ~~iGs 218 (304)
T PRK07340 214 VAVGA 218 (304)
T ss_pred EecCC
Confidence 65554
No 189
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.92 E-value=0.0062 Score=50.67 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=30.7
Q ss_pred eEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 16 DGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 16 i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
|.|+ |.+|+.++..|++.|++|+++-|++++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc
Confidence 5667 999999999999999999999999987664
No 190
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=96.90 E-value=0.0034 Score=59.94 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=32.6
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~ 50 (294)
++|+|+ |.||..++..|...| .+|+++++++++....
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~l 220 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDL 220 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 689999 999999999999999 7899999998776543
No 191
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=96.88 E-value=0.02 Score=51.67 Aligned_cols=139 Identities=19% Similarity=0.161 Sum_probs=90.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH-HHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ-IENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
++|+|| |.-|.+-|.+++.+|.+|++--|.... .+++++
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~-------------------------------------- 60 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKE-------------------------------------- 60 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHh--------------------------------------
Confidence 689999 999999999999999999887765443 332221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHH-HHhcccCCCeEEEe
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYR-AIDIFMSSNTILSS 169 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~-~l~~~~~~~~ii~s 169 (294)
.| +. .-++++|++.+|+|+.-+|+..+ .++++ +|.+.++++..+..
T Consensus 61 ----------------dG--------------f~-V~~v~ea~k~ADvim~L~PDe~q--~~vy~~~I~p~Lk~G~aL~F 107 (338)
T COG0059 61 ----------------DG--------------FK-VYTVEEAAKRADVVMILLPDEQQ--KEVYEKEIAPNLKEGAALGF 107 (338)
T ss_pred ----------------cC--------------CE-eecHHHHhhcCCEEEEeCchhhH--HHHHHHHhhhhhcCCceEEe
Confidence 22 22 35678899999999999998763 46776 89999999988763
Q ss_pred cCCCCCHHHHHhhcCCCCceeeeeecCCC---C-------CC---C-eEEEecCCCCCHHHHHHHHHHHHHcCC
Q psy13746 170 STSSFLPSVLSEHSTHRSQFIVAHPVNPP---Y-------FI---P-LVEIVPAAWTSERVITRTREIMTEIGM 229 (294)
Q Consensus 170 ~tSt~~~~~ia~~l~~~~~~ig~h~~~p~---~-------~~---~-lveiv~g~~t~~e~~~~~~~ll~~lG~ 229 (294)
+.+..+-. ... .|...+..-...|- + .+ + ++-+-. ..+....+.+..+.+.+|.
T Consensus 108 -aHGfNihf--~~i-~ppkdvdV~MVAPKgPG~~VR~~y~~G~GvP~LiAV~q--D~sG~a~~~Ala~AkgiGg 175 (338)
T COG0059 108 -AHGFNIHF--GLI-VPPKDVDVIMVAPKGPGHLVRREYKEGFGVPALIAVHQ--DASGKALDIALAYAKGIGG 175 (338)
T ss_pred -ccccceec--cee-cCCccCcEEEEcCCCCcHHHHHHHHccCCceeEEEEEe--CCCchHHHHHHHHHHhcCC
Confidence 44544321 111 22222332222331 1 01 2 222222 2345678888899999995
No 192
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.79 E-value=0.0022 Score=60.35 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=33.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
.+|.|+ |.+|...+..+...|.+|+++|+++++++.+.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~ 207 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLD 207 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHH
Confidence 568888 99999999999999999999999998876543
No 193
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.78 E-value=0.0022 Score=57.87 Aligned_cols=39 Identities=15% Similarity=0.140 Sum_probs=33.9
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~ 52 (294)
+++.|+ |.+|++++..|+..| .+|++++|++++.+...+
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~ 165 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAK 165 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 578888 999999999999999 699999999988766544
No 194
>KOG0069|consensus
Probab=96.76 E-value=0.012 Score=54.29 Aligned_cols=114 Identities=18% Similarity=0.086 Sum_probs=77.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQI 90 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~ 90 (294)
-++|+|+ |.+|+.+|+.|...|..+.-+.|++...+...++
T Consensus 162 gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~------------------------------------- 204 (336)
T KOG0069|consen 162 GKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEY------------------------------------- 204 (336)
T ss_pred CCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHh-------------------------------------
Confidence 3789999 9999999999999995566666665544433221
Q ss_pred HHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEec
Q psy13746 91 ENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 91 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+ .-..|..+.++.+|+|+.|.|-+.+...-+=+++...++++.+|+ |
T Consensus 205 -----------------~---------------~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlV-N 251 (336)
T KOG0069|consen 205 -----------------Y---------------AEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLV-N 251 (336)
T ss_pred -----------------c---------------ccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEE-e
Confidence 0 003466778999999999999988776656678888999999997 5
Q ss_pred CC-C--CCHHHHHhhcC-CCCceeeeeecC
Q psy13746 171 TS-S--FLPSVLSEHST-HRSQFIVAHPVN 196 (294)
Q Consensus 171 tS-t--~~~~~ia~~l~-~~~~~ig~h~~~ 196 (294)
++ + +.-+.+.+.+. .+..-.|...+.
T Consensus 252 ~aRG~iide~~l~eaL~sG~i~~aGlDVf~ 281 (336)
T KOG0069|consen 252 TARGAIIDEEALVEALKSGKIAGAGLDVFE 281 (336)
T ss_pred ccccccccHHHHHHHHhcCCcccccccccC
Confidence 55 3 23334555553 222334555444
No 195
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.76 E-value=0.0058 Score=58.52 Aligned_cols=37 Identities=24% Similarity=0.256 Sum_probs=32.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~ 50 (294)
++|+|+ |.||+.++..+...|. +|+++++++++....
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~l 222 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEEL 222 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence 689999 9999999999999997 899999999876543
No 196
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=96.76 E-value=0.0096 Score=54.38 Aligned_cols=34 Identities=24% Similarity=0.417 Sum_probs=28.7
Q ss_pred cceEEE--ccccHHHHHHHHHCC--CeEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG--YKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G--~~V~~~d~~~~~~ 47 (294)
+||+|| |.+|++.|+.++..+ .++.++|++++..
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~ 38 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKA 38 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccc
Confidence 489999 999999999998765 4899999995543
No 197
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.75 E-value=0.009 Score=55.18 Aligned_cols=93 Identities=11% Similarity=0.084 Sum_probs=64.2
Q ss_pred ccceEEE--ccccHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 13 FYPDGII--GLIGQAWAMIFAS-AGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
.++++|| |.+|+..+..++. .+. +|++|+|++++.+...+++.+
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~-------------------------------- 176 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSS-------------------------------- 176 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHh--------------------------------
Confidence 4689999 9999999999874 664 799999999988776554320
Q ss_pred HHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEE
Q psy13746 89 QIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS 168 (294)
Q Consensus 89 ~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~ 168 (294)
. .| -.+...+++++++++||+|+.|+|.... ++. .+.+++++.+.
T Consensus 177 -----------~------~g------------~~v~~~~~~~~av~~aDiVvtaT~s~~p----~i~--~~~l~~g~~i~ 221 (326)
T TIGR02992 177 -----------L------LG------------IDVTAATDPRAAMSGADIIVTTTPSETP----ILH--AEWLEPGQHVT 221 (326)
T ss_pred -----------h------cC------------ceEEEeCCHHHHhccCCEEEEecCCCCc----Eec--HHHcCCCcEEE
Confidence 0 01 0133457888889999999999987542 221 12367787765
Q ss_pred ecCC
Q psy13746 169 SSTS 172 (294)
Q Consensus 169 s~tS 172 (294)
...+
T Consensus 222 ~vg~ 225 (326)
T TIGR02992 222 AMGS 225 (326)
T ss_pred eeCC
Confidence 4443
No 198
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.74 E-value=0.013 Score=57.99 Aligned_cols=39 Identities=10% Similarity=0.257 Sum_probs=35.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.+|.|+ |.+|+.+|..|.+.|++|+++|.|+++++++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~ 458 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE 458 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH
Confidence 577788 999999999999999999999999999887754
No 199
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.72 E-value=0.033 Score=42.86 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=32.2
Q ss_pred eEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.|+ |.+|..++..|.+.+.+|+++|.+++..+++.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~ 39 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE 39 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh
Confidence 3466 999999999999977799999999999887654
No 200
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.72 E-value=0.014 Score=53.55 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=30.0
Q ss_pred ceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
||+|| |.+|+.+|..++..|. ++.++|++++.++
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~ 38 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAE 38 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhh
Confidence 68999 9999999999998886 7999999887654
No 201
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=96.68 E-value=0.027 Score=54.02 Aligned_cols=36 Identities=17% Similarity=0.159 Sum_probs=31.1
Q ss_pred cceEEE---ccccHHHHHHHHHC-------CC--eEEEEeCChHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-------GY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-------G~--~V~~~d~~~~~~~~ 49 (294)
-||+|| |.+|..+|..++.. |. ++.++|++++.++-
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G 148 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEG 148 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHH
Confidence 479999 88999999999988 65 79999999988664
No 202
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=96.64 E-value=0.01 Score=54.55 Aligned_cols=96 Identities=17% Similarity=0.195 Sum_probs=58.7
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |..|+.-+..++. .+ .+|.+|+|++++.++..+.+.+
T Consensus 127 ~~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~------------------------------- 175 (313)
T PF02423_consen 127 DARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRD------------------------------- 175 (313)
T ss_dssp T--EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHC-------------------------------
T ss_pred CCceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhcc-------------------------------
Confidence 34689999 9999988887765 44 4899999999988876654430
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.| -.+...+|.++++++||+|+.|+|..... .++. .+++++++.|
T Consensus 176 -------------------~~------------~~v~~~~~~~~av~~aDii~taT~s~~~~--P~~~--~~~l~~g~hi 220 (313)
T PF02423_consen 176 -------------------LG------------VPVVAVDSAEEAVRGADIIVTATPSTTPA--PVFD--AEWLKPGTHI 220 (313)
T ss_dssp -------------------CC------------TCEEEESSHHHHHTTSSEEEE----SSEE--ESB---GGGS-TT-EE
T ss_pred -------------------cc------------ccceeccchhhhcccCCEEEEccCCCCCC--cccc--HHHcCCCcEE
Confidence 01 12456789999999999999999875400 1222 2357889888
Q ss_pred EecCCC
Q psy13746 168 SSSTSS 173 (294)
Q Consensus 168 ~s~tSt 173 (294)
....|.
T Consensus 221 ~~iGs~ 226 (313)
T PF02423_consen 221 NAIGSY 226 (313)
T ss_dssp EE-S-S
T ss_pred EEecCC
Confidence 755553
No 203
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=96.64 E-value=0.014 Score=50.60 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=28.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 578999 9999999999999998 599999983
No 204
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=96.61 E-value=0.036 Score=42.79 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=29.5
Q ss_pred ceEEE--ccccHHHHHHHHHC--CCeE-EEEeCChHHHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASA--GYKV-SLYDVLSEQIENAK 51 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~--G~~V-~~~d~~~~~~~~~~ 51 (294)
||+|| |.+|+.....+... +.++ .++|+++++.+...
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~ 43 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFA 43 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHH
Confidence 78999 89999998888876 4554 48999998877653
No 205
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=96.61 E-value=0.012 Score=52.59 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=39.1
Q ss_pred CCCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHh
Q psy13746 10 QGGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 56 (294)
Q Consensus 10 ~~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~ 56 (294)
.|..+++.|- +-+|..+|..|++.|++|+++.|+.++++++.+.+.+
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~ 52 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED 52 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH
Confidence 3444444444 8899999999999999999999999999999888773
No 206
>PLN00106 malate dehydrogenase
Probab=96.56 E-value=0.011 Score=54.59 Aligned_cols=31 Identities=23% Similarity=0.536 Sum_probs=28.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~ 44 (294)
.||+|+ |.+|+.+|..++..|. ++.++|+++
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 589999 8999999999997765 899999987
No 207
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=96.56 E-value=0.013 Score=53.61 Aligned_cols=94 Identities=14% Similarity=0.083 Sum_probs=65.0
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |..|+.-+..++. .. .+|.+|+|++++.++..+.+.+
T Consensus 116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~------------------------------- 164 (301)
T PRK06407 116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSK------------------------------- 164 (301)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHH-------------------------------
Confidence 34789999 9999988887776 33 3899999999998876554321
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
. .| -.+...++.++++++||+|+.|++... .++. .++++|++.|
T Consensus 165 ------------~------~~------------~~v~~~~~~~eav~~aDIV~taT~s~~----P~~~--~~~l~pg~hV 208 (301)
T PRK06407 165 ------------E------FG------------VDIRPVDNAEAALRDADTITSITNSDT----PIFN--RKYLGDEYHV 208 (301)
T ss_pred ------------h------cC------------CcEEEeCCHHHHHhcCCEEEEecCCCC----cEec--HHHcCCCceE
Confidence 0 01 124556889999999999999988653 3331 1246677766
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 209 ~aiGs 213 (301)
T PRK06407 209 NLAGS 213 (301)
T ss_pred EecCC
Confidence 54444
No 208
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.54 E-value=0.018 Score=55.29 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=34.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|+.+|..|...|++|+++|++++.++.+.+
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 368888 999999999999999999999999998776543
No 209
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.54 E-value=0.01 Score=54.92 Aligned_cols=42 Identities=10% Similarity=0.032 Sum_probs=34.0
Q ss_pred ccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i 54 (294)
.++++|| |.+|+..+..++. .+ .+|.+|+|++++.+...+.+
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~ 177 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADL 177 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 4689999 9999998888875 45 58999999999988765543
No 210
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=96.50 E-value=0.017 Score=53.35 Aligned_cols=95 Identities=14% Similarity=0.189 Sum_probs=67.3
Q ss_pred CCccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecc
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVL 86 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~ 86 (294)
.....++|| |.++.-....+.. .+ -+|.+|+|+++..++......
T Consensus 128 ~da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~------------------------------- 176 (330)
T COG2423 128 KDASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLR------------------------------- 176 (330)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHH-------------------------------
Confidence 345789999 9999888887776 34 489999999999887654332
Q ss_pred hHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeE
Q psy13746 87 SEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTI 166 (294)
Q Consensus 87 ~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~i 166 (294)
+.+. ..+...++.++++++||+|+.|+|.... ++. .+++++++-
T Consensus 177 -------------------~~~~-----------~~v~a~~s~~~av~~aDiIvt~T~s~~P----il~--~~~l~~G~h 220 (330)
T COG2423 177 -------------------KRGG-----------EAVGAADSAEEAVEGADIVVTATPSTEP----VLK--AEWLKPGTH 220 (330)
T ss_pred -------------------hhcC-----------ccceeccCHHHHhhcCCEEEEecCCCCC----eec--HhhcCCCcE
Confidence 1111 1245678889999999999999988653 221 235678888
Q ss_pred EEecCC
Q psy13746 167 LSSSTS 172 (294)
Q Consensus 167 i~s~tS 172 (294)
|....+
T Consensus 221 I~aiGa 226 (330)
T COG2423 221 INAIGA 226 (330)
T ss_pred EEecCC
Confidence 865544
No 211
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.46 E-value=0.031 Score=56.16 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=35.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|+ |.+|+.+|+.|.+.|+++++.|.|+++++.+++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~ 441 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK 441 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh
Confidence 578778 999999999999999999999999999887753
No 212
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.44 E-value=0.043 Score=52.57 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=20.5
Q ss_pred CeeeccChhhhccCCcEEEEcCCc
Q psy13746 122 LISGTPVLRECLEDAIFIQESVPE 145 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavpe 145 (294)
++..|+|.++|+++||+||.++-.
T Consensus 61 ~v~~ttD~~~Al~gADfVi~~irv 84 (425)
T cd05197 61 KFEKTMDLEDAIIDADFVINQFRV 84 (425)
T ss_pred EEEEeCCHHHHhCCCCEEEEeeec
Confidence 367889999999999999998644
No 213
>PRK06823 ornithine cyclodeaminase; Validated
Probab=96.43 E-value=0.022 Score=52.33 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=65.5
Q ss_pred CccceEEE--ccccHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASA--GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~--G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |..++.-+..++.. -.+|.+|+|++++.+...+.+.
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~-------------------------------- 174 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQ-------------------------------- 174 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHH--------------------------------
Confidence 45789999 99999988877752 3489999999999886654322
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
+.| -.+...++.++++++||+|+.|++... .+|. .+++++++.|
T Consensus 175 ------------------~~~------------~~v~~~~~~~~av~~ADIV~taT~s~~----P~~~--~~~l~~G~hi 218 (315)
T PRK06823 175 ------------------ALG------------FAVNTTLDAAEVAHAANLIVTTTPSRE----PLLQ--AEDIQPGTHI 218 (315)
T ss_pred ------------------hcC------------CcEEEECCHHHHhcCCCEEEEecCCCC----ceeC--HHHcCCCcEE
Confidence 011 014456788889999999999987643 3332 1356788877
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 219 ~~iGs 223 (315)
T PRK06823 219 TAVGA 223 (315)
T ss_pred EecCC
Confidence 65554
No 214
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=96.40 E-value=0.052 Score=51.24 Aligned_cols=36 Identities=19% Similarity=0.302 Sum_probs=27.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCC-------eEEEE--eCChHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY-------KVSLY--DVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~--d~~~~~~~~ 49 (294)
-||+|| |.+|..+|..++..|. .+.++ |++++.++-
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g 92 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEG 92 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhH
Confidence 489999 8899999999998764 24445 777777553
No 215
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.40 E-value=0.013 Score=54.00 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=28.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCC-------eEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY-------KVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~~ 45 (294)
.||+|| |.+|.++|..++..|. ++.++|++++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~ 44 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQA 44 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCc
Confidence 589999 8899999999998876 7999999653
No 216
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=96.39 E-value=0.017 Score=50.07 Aligned_cols=37 Identities=24% Similarity=0.427 Sum_probs=29.8
Q ss_pred ceEEE--ccccHHHHHHHHHC--CC-eEEEEeCChHHHHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASA--GY-KVSLYDVLSEQIENAK 51 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~--G~-~V~~~d~~~~~~~~~~ 51 (294)
+|++| |.+|..+...+..- .+ .|.+||++++++.++.
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~ 43 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELE 43 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHH
Confidence 78999 99999999877653 24 5889999999877654
No 217
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=96.39 E-value=0.0077 Score=51.18 Aligned_cols=35 Identities=23% Similarity=0.161 Sum_probs=30.5
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
..-++|+|| ..+|+++|..|.+.|..|+++|++--
T Consensus 60 l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~ 97 (197)
T cd01079 60 LYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGI 97 (197)
T ss_pred CCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcc
Confidence 344789999 89999999999999999999997753
No 218
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.38 E-value=0.054 Score=52.02 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=20.6
Q ss_pred CeeeccChhhhccCCcEEEEcCCc
Q psy13746 122 LISGTPVLRECLEDAIFIQESVPE 145 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavpe 145 (294)
++..|+|..+|+++||+||.++-.
T Consensus 61 ~v~~Ttdr~eAl~gADfVi~~irv 84 (437)
T cd05298 61 KFVYTTDPEEAFTDADFVFAQIRV 84 (437)
T ss_pred EEEEECCHHHHhCCCCEEEEEeee
Confidence 467889999999999999998644
No 219
>KOG1683|consensus
Probab=96.36 E-value=0.0013 Score=60.56 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHcccCCCcCCCChhhhhcccCC
Q psy13746 242 ALNRIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLGLRYAFLGPLETIHLNSA 294 (294)
Q Consensus 242 v~nri~~a~~~Ea~~l~~~~~~-~~~~id~a~~~g~g~~~~~~Gp~~~~D~~~~ 294 (294)
++++++.+++||++.++++|.+ ++.++|-+.-.|+|||....|||.|.|..|+
T Consensus 296 ~v~~~~~p~VnEal~~l~EGi~~~~~~~Di~~v~G~gfp~~~GGp~~~~d~~G~ 349 (380)
T KOG1683|consen 296 FVEFLLSPFVNEALRCLLEGLKASPSDGDIASVFGLGFPPFRGGPMRFVDLYGA 349 (380)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCccccceeeeeccCCCCcCCCceeeeeccCh
Confidence 6788899999999999999965 4888888877899999999999999999885
No 220
>PLN00203 glutamyl-tRNA reductase
Probab=96.35 E-value=0.008 Score=58.89 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=34.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
-++|+|| |.||+.++.+|...|. +|++++|++++.+...+
T Consensus 266 ~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~ 308 (519)
T PLN00203 266 SARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALRE 308 (519)
T ss_pred CCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH
Confidence 4689999 9999999999999997 79999999988766543
No 221
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=96.34 E-value=0.017 Score=45.61 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=26.3
Q ss_pred cceEEE---ccccHHHHHHHHH-CCCe-EEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFAS-AGYK-VSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~-~G~~-V~~~d~~~ 44 (294)
+||+|+ |.||+.++..+.+ .|++ |-.+|+++
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 378899 9999999999998 7887 55788887
No 222
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=96.34 E-value=0.026 Score=52.04 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCC-------eEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY-------KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~ 44 (294)
-||+|| |.+|+.+|..+...|. ++.++|+++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~ 44 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPP 44 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCC
Confidence 489999 9999999999998885 799999975
No 223
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.31 E-value=0.049 Score=51.99 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=33.0
Q ss_pred CCccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 11 GGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 11 ~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
|+.++|.|+ |.+|.++|..|.+.|++|+++|++++.+
T Consensus 1 ~~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~ 39 (418)
T PRK00683 1 MGLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEAL 39 (418)
T ss_pred CCCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCcccc
Confidence 566899999 9999999999999999999999887654
No 224
>PRK05442 malate dehydrogenase; Provisional
Probab=96.27 E-value=0.021 Score=52.75 Aligned_cols=32 Identities=19% Similarity=0.254 Sum_probs=27.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCC-------eEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY-------KVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~~ 45 (294)
.||+|| |.+|+.+|..++..|. ++.++|++++
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~ 46 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPA 46 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCc
Confidence 599999 9999999999988664 7999999653
No 225
>KOG1201|consensus
Probab=96.26 E-value=0.017 Score=52.08 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=54.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
..+++| +-+|+.||..+++.|.++.+||++++..++..+.+++. .-...+.+|+++ +
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~------------------g~~~~y~cdis~~e 99 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKI------------------GEAKAYTCDISDRE 99 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhc------------------CceeEEEecCCCHH
Confidence 467777 67999999999999999999999999999888877620 014557788887 7
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
.+.+..++++++.
T Consensus 100 ei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 100 EIYRLAKKVKKEV 112 (300)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777666555
No 226
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.25 E-value=0.011 Score=52.60 Aligned_cols=34 Identities=9% Similarity=0.138 Sum_probs=26.7
Q ss_pred cceEEE---ccccHHHHHHHHH-CCCeEE-EEeCChHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFAS-AGYKVS-LYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~-~G~~V~-~~d~~~~~~ 47 (294)
.||+|+ |.||+.++..+.+ .++++. ++|++++..
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~ 40 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL 40 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc
Confidence 589999 8899999988876 467755 688887653
No 227
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.25 E-value=0.019 Score=52.65 Aligned_cols=30 Identities=30% Similarity=0.603 Sum_probs=27.1
Q ss_pred ceEEE---ccccHHHHHHHHHCCC--eEEEEeCCh
Q psy13746 15 PDGII---GLIGQAWAMIFASAGY--KVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~~ 44 (294)
||+|| |.+|+++|..++..|+ ++.++|+++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 68899 8999999999998876 899999987
No 228
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.23 E-value=0.023 Score=45.90 Aligned_cols=38 Identities=11% Similarity=0.219 Sum_probs=27.7
Q ss_pred ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 128 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 128 ~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
++++++++||+||.++.-...++.+ ++++++++.+.+.
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~i~~~-------~ikpGa~Vidvg~ 101 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEKVPTE-------WIKPGATVINCSP 101 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCccCHH-------HcCCCCEEEEcCC
Confidence 5667889999999998765434433 4788998876543
No 229
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=96.23 E-value=0.023 Score=44.38 Aligned_cols=40 Identities=8% Similarity=0.030 Sum_probs=29.2
Q ss_pred cCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCC
Q psy13746 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFL 175 (294)
Q Consensus 134 ~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~ 175 (294)
.++|+||.|+|.+... +++..+...+.+++++++.+|++.
T Consensus 64 ~~~DvV~~~~~~~~~~--~~~~~~~~~~~~g~~viD~s~~~~ 103 (122)
T smart00859 64 LAVDIVFLALPHGVSK--EIAPLLPKAAEAGVKVIDLSSAFR 103 (122)
T ss_pred cCCCEEEEcCCcHHHH--HHHHHHHhhhcCCCEEEECCcccc
Confidence 5899999999998644 333344455678999988877654
No 230
>PRK06046 alanine dehydrogenase; Validated
Probab=96.21 E-value=0.034 Score=51.35 Aligned_cols=93 Identities=14% Similarity=0.177 Sum_probs=63.8
Q ss_pred CccceEEE--ccccHHHHHHHHH-CCC-eEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AGY-KVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G~-~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++|+|| |.+|+..+..++. .+. +|.+||+++++.++..+.+.+.
T Consensus 128 ~~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~------------------------------ 177 (326)
T PRK06046 128 DSKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSV------------------------------ 177 (326)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhh------------------------------
Confidence 45789999 9999999988875 343 7999999998887765543200
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.| -.+...++++++++ +|+|+.|+|... .+|. .+++++++.|
T Consensus 178 -------------------~~------------~~v~~~~~~~~~l~-aDiVv~aTps~~----P~~~--~~~l~~g~hV 219 (326)
T PRK06046 178 -------------------VG------------CDVTVAEDIEEACD-CDILVTTTPSRK----PVVK--AEWIKEGTHI 219 (326)
T ss_pred -------------------cC------------ceEEEeCCHHHHhh-CCEEEEecCCCC----cEec--HHHcCCCCEE
Confidence 01 01344567888776 999999999753 2322 1246788887
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 220 ~~iGs 224 (326)
T PRK06046 220 NAIGA 224 (326)
T ss_pred EecCC
Confidence 65554
No 231
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.21 E-value=0.034 Score=54.35 Aligned_cols=39 Identities=26% Similarity=0.195 Sum_probs=35.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.+|.|+ |.+|...+..+...|.+|+++|+++++++.+++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 588899 999999999999999999999999999987765
No 232
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.16 E-value=0.059 Score=51.69 Aligned_cols=40 Identities=28% Similarity=0.333 Sum_probs=35.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.++|.|+ |.+|+.++..|.+.|++|+++|.+++.++...+
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~ 272 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAE 272 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence 4688888 999999999999999999999999998876554
No 233
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.16 E-value=0.04 Score=53.76 Aligned_cols=39 Identities=26% Similarity=0.180 Sum_probs=34.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
.++.|+ |.+|...+..+...|..|+++|+++++++.+++
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 588899 999999999999999999999999998876654
No 234
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.11 E-value=0.1 Score=44.99 Aligned_cols=34 Identities=15% Similarity=0.040 Sum_probs=30.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
+-++|.|| |.+|.+-+..|++.|.+|++++.+..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~ 43 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELE 43 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence 34689999 99999999999999999999998654
No 235
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.11 E-value=0.016 Score=54.65 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=32.0
Q ss_pred eEEE--ccccHHHHHHHHHCC-C-eEEEEeCChHHHHHHHH
Q psy13746 16 DGII--GLIGQAWAMIFASAG-Y-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 16 i~ii--G~mG~~iA~~~~~~G-~-~V~~~d~~~~~~~~~~~ 52 (294)
|.|+ |.+|+.++..|++.+ + +|++.||+.+++++..+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~ 41 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAE 41 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHh
Confidence 5677 999999999999976 4 89999999999887654
No 236
>PRK07589 ornithine cyclodeaminase; Validated
Probab=96.11 E-value=0.051 Score=50.59 Aligned_cols=95 Identities=16% Similarity=0.203 Sum_probs=63.2
Q ss_pred CccceEEE--ccccHHHHHHHHH-CC-CeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AG-YKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G-~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
..++++|| |..+..-+..++. .. .+|.+|+|++++.+...+.+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~------------------------------- 176 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAG------------------------------- 176 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHh-------------------------------
Confidence 45789999 9988887765554 23 4899999999998776554320
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
.| -.+...++.++++++||+|+.|++.... ..++. .+++++++.|
T Consensus 177 -------------------~~------------~~v~~~~~~~~av~~ADIIvtaT~S~~~--~Pvl~--~~~lkpG~hV 221 (346)
T PRK07589 177 -------------------PG------------LRIVACRSVAEAVEGADIITTVTADKTN--ATILT--DDMVEPGMHI 221 (346)
T ss_pred -------------------cC------------CcEEEeCCHHHHHhcCCEEEEecCCCCC--Cceec--HHHcCCCcEE
Confidence 11 0145568899999999999999974320 01121 1346888877
Q ss_pred EecCC
Q psy13746 168 SSSTS 172 (294)
Q Consensus 168 ~s~tS 172 (294)
....|
T Consensus 222 ~aIGs 226 (346)
T PRK07589 222 NAVGG 226 (346)
T ss_pred EecCC
Confidence 65444
No 237
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.09 E-value=0.019 Score=51.98 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=33.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~ 52 (294)
+++.|| |-+|++++..|+..|. +|++++|++++.++..+
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~ 167 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVD 167 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 578888 9999999999999997 79999999988766544
No 238
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=96.04 E-value=0.022 Score=47.05 Aligned_cols=31 Identities=16% Similarity=0.280 Sum_probs=24.6
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
-++|.|| +.+|+++|..|.+.|..|++.+..
T Consensus 36 Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~ 69 (160)
T PF02882_consen 36 GKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSK 69 (160)
T ss_dssp T-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TT
T ss_pred CCEEEEECCcCCCChHHHHHHHhCCCeEEeccCC
Confidence 3688888 789999999999999999988744
No 239
>CHL00194 ycf39 Ycf39; Provisional
Probab=96.04 E-value=0.021 Score=52.17 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=29.8
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
+|.|. |.+|+.++..|++.||+|++.+|+++..
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~ 37 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA 37 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh
Confidence 68888 9999999999999999999999997653
No 240
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.03 E-value=0.071 Score=50.98 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=19.8
Q ss_pred CeeeccChhhhccCCcEEEEcCC
Q psy13746 122 LISGTPVLRECLEDAIFIQESVP 144 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavp 144 (294)
++..++|.++|+.+||+||.++-
T Consensus 62 ~v~~t~d~~~al~gadfVi~~~~ 84 (419)
T cd05296 62 KVHLTTDRREALEGADFVFTQIR 84 (419)
T ss_pred EEEEeCCHHHHhCCCCEEEEEEe
Confidence 36778999999999999999853
No 241
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.01 E-value=0.03 Score=51.07 Aligned_cols=30 Identities=23% Similarity=0.452 Sum_probs=25.8
Q ss_pred ccccHHHHHHHHHCCC--eEEEEeCChHHHHH
Q psy13746 20 GLIGQAWAMIFASAGY--KVSLYDVLSEQIEN 49 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~~ 49 (294)
|.+|..+|..++..|. ++.++|++++.++-
T Consensus 5 G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g 36 (299)
T TIGR01771 5 GNVGSSTAFALLNQGIADEIVLIDINKDKAEG 36 (299)
T ss_pred CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhH
Confidence 9999999999998875 79999998876543
No 242
>PRK05993 short chain dehydrogenase; Provisional
Probab=95.99 E-value=0.032 Score=49.85 Aligned_cols=37 Identities=22% Similarity=0.151 Sum_probs=31.0
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
+++.+| |.+|+.+|..|++.|++|++.+|+++.++..
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l 44 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAAL 44 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 444445 8899999999999999999999998877654
No 243
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=95.97 E-value=0.034 Score=46.78 Aligned_cols=36 Identities=17% Similarity=0.083 Sum_probs=33.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
+||+|| |..|+.|+.-....||+|+.+-||++++..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccc
Confidence 589999 999999999999999999999999988754
No 244
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.90 E-value=0.039 Score=49.89 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=27.2
Q ss_pred CccceEEE--cc-ccHHHHHHHHHCCCeEEEEeCC
Q psy13746 12 GFYPDGII--GL-IGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 12 ~~~~i~ii--G~-mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
.-++|+|| |. +|+++|..|...|..|+++++.
T Consensus 157 ~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~ 191 (286)
T PRK14175 157 EGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSR 191 (286)
T ss_pred CCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCC
Confidence 34789999 44 9999999999999999999853
No 245
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.89 E-value=0.025 Score=54.98 Aligned_cols=39 Identities=21% Similarity=0.215 Sum_probs=33.6
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
-++++|+ |.+|++++..++..|++|+++++++++.+...
T Consensus 332 ~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la 372 (477)
T PRK09310 332 NQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALA 372 (477)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3578888 99999999999999999999999987766543
No 246
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=95.89 E-value=0.043 Score=48.36 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=34.8
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++.|. |.+|+++|..|++.|++|++.+++++.+++..+.+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 45 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELK 45 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 56666 889999999999999999999999988877666543
No 247
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=95.88 E-value=0.14 Score=43.97 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=29.0
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
+-++|.|| |.+|...+..|.+.|++|++++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~ 43 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPEL 43 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 34789999 9999999999999999999998653
No 248
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=95.87 E-value=0.026 Score=44.22 Aligned_cols=41 Identities=10% Similarity=0.111 Sum_probs=28.2
Q ss_pred ChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCC
Q psy13746 128 VLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSF 174 (294)
Q Consensus 128 ~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~ 174 (294)
+.. .+.++|+||.|+|... ..++..++ +..++.|+++++..
T Consensus 60 ~~~-~~~~~Dvvf~a~~~~~--~~~~~~~~---~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 60 DPE-ELSDVDVVFLALPHGA--SKELAPKL---LKAGIKVIDLSGDF 100 (121)
T ss_dssp SGH-HHTTESEEEE-SCHHH--HHHHHHHH---HHTTSEEEESSSTT
T ss_pred chh-HhhcCCEEEecCchhH--HHHHHHHH---hhCCcEEEeCCHHH
Confidence 444 5799999999999764 34555544 45677888887765
No 249
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.87 E-value=0.064 Score=49.20 Aligned_cols=30 Identities=23% Similarity=0.520 Sum_probs=27.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCC--eEEEEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGY--KVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~--~V~~~d~~ 43 (294)
+||+|| |.+|+++|..++..|. ++.++|++
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 389999 8999999999998884 89999998
No 250
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=95.86 E-value=0.058 Score=56.89 Aligned_cols=41 Identities=15% Similarity=0.051 Sum_probs=33.1
Q ss_pred CccceEEE--ccccHHHHHHHHHC-CCe-------------EEEEeCChHHHHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASA-GYK-------------VSLYDVLSEQIENAKN 52 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~-G~~-------------V~~~d~~~~~~~~~~~ 52 (294)
..++|+|| |.||+..|..|++. +++ |++.|++++..+++.+
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~ 624 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVE 624 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHH
Confidence 35799999 99999999999874 334 9999999888765543
No 251
>PRK06182 short chain dehydrogenase; Validated
Probab=95.84 E-value=0.044 Score=48.69 Aligned_cols=60 Identities=25% Similarity=0.207 Sum_probs=43.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+ .+..++.+|+.+ +.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~-----------------------~~~~~~~~Dv~~~~~ 60 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS-----------------------LGVHPLSLDVTDEAS 60 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------------------CCCeEEEeeCCCHHH
Confidence 455555 899999999999999999999999887654321 145667788877 44
Q ss_pred HHHHHHH
Q psy13746 90 IENAKNT 96 (294)
Q Consensus 90 ~~~~~~~ 96 (294)
++...+.
T Consensus 61 ~~~~~~~ 67 (273)
T PRK06182 61 IKAAVDT 67 (273)
T ss_pred HHHHHHH
Confidence 5444443
No 252
>PLN02253 xanthoxin dehydrogenase
Probab=95.83 E-value=0.069 Score=47.57 Aligned_cols=67 Identities=16% Similarity=0.218 Sum_probs=45.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
++.+| |.+|+.+|..|++.|++|++++++++..++..+.+. ....+..+-.|+.+ +.
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~Dl~d~~~ 80 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG------------------GEPNVCFFHCDVTVEDD 80 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc------------------CCCceEEEEeecCCHHH
Confidence 44455 889999999999999999999999877655443321 01235566678777 45
Q ss_pred HHHHHHHHHH
Q psy13746 90 IENAKNTIQH 99 (294)
Q Consensus 90 ~~~~~~~~~~ 99 (294)
+++..+.+.+
T Consensus 81 ~~~~~~~~~~ 90 (280)
T PLN02253 81 VSRAVDFTVD 90 (280)
T ss_pred HHHHHHHHHH
Confidence 5555554433
No 253
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.83 E-value=0.055 Score=49.89 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=29.1
Q ss_pred CCCCCccceEEE---ccccHHHHHHHHHCC--CeEEEEeC
Q psy13746 8 PAQGGFYPDGII---GLIGQAWAMIFASAG--YKVSLYDV 42 (294)
Q Consensus 8 ~~~~~~~~i~ii---G~mG~~iA~~~~~~G--~~V~~~d~ 42 (294)
|.--+++||+|+ |.+|+.+|..++..| .++.++|+
T Consensus 3 ~~~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 3 PSALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 344456799999 999999999998655 58999999
No 254
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.83 E-value=0.03 Score=46.69 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=27.7
Q ss_pred ccceEEE--ccc-cHHHHHHHHHCCCeEEEEeCCh
Q psy13746 13 FYPDGII--GLI-GQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 13 ~~~i~ii--G~m-G~~iA~~~~~~G~~V~~~d~~~ 44 (294)
-++|.|+ |.| |..+|..|.+.|.+|++.+++.
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 3789999 876 8889999999999999999873
No 255
>PRK08339 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.053 Score=48.13 Aligned_cols=42 Identities=26% Similarity=0.240 Sum_probs=35.3
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.|+++| |.+|+.+|..|++.|++|++.+|+++.+++..+.+.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 53 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIK 53 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 366666 689999999999999999999999988877665543
No 256
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.057 Score=46.98 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=31.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
+.+|+++|..|++.|++|.+.+|+++.+++..+.+.
T Consensus 15 ~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~ 50 (227)
T PRK08862 15 SVLGRTISCHFARLGATLILCDQDQSALKDTYEQCS 50 (227)
T ss_pred cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence 678999999999999999999999999887766553
No 257
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=95.81 E-value=0.054 Score=47.55 Aligned_cols=70 Identities=26% Similarity=0.230 Sum_probs=54.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.||++| .-+|.++|+.|+.+|++|.+..|..++++++...+.. .-.-+...|+.| +
T Consensus 6 ~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~-------------------~~~~~~~~DVtD~~ 66 (246)
T COG4221 6 GKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-------------------GAALALALDVTDRA 66 (246)
T ss_pred CcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc-------------------CceEEEeeccCCHH
Confidence 478888 6789999999999999999999999999988776531 224566778877 5
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTLQ 102 (294)
Q Consensus 89 ~~~~~~~~~~~~l~ 102 (294)
.++.+.+.+...++
T Consensus 67 ~~~~~i~~~~~~~g 80 (246)
T COG4221 67 AVEAAIEALPEEFG 80 (246)
T ss_pred HHHHHHHHHHHhhC
Confidence 66777776666553
No 258
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.81 E-value=0.042 Score=47.14 Aligned_cols=31 Identities=29% Similarity=0.269 Sum_probs=28.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 478888 9999999999999997 899999884
No 259
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.78 E-value=0.015 Score=52.69 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=66.3
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIE 91 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 91 (294)
.+|+|| |+.|.--|+...--|.+|++.|+|.+++........
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~------------------------------------ 212 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG------------------------------------ 212 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC------------------------------------
Confidence 478999 999999999888889999999999999876543211
Q ss_pred HHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchH-HHHHHHHHHhcccCCCeEEEec
Q psy13746 92 NAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQ-IKHQVYRAIDIFMSSNTILSSS 170 (294)
Q Consensus 92 ~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~-~k~~~~~~l~~~~~~~~ii~s~ 170 (294)
+.+. -+.+-..++++++..+|+||-++--.-. .=+-+.+++.+.++++++|++.
T Consensus 213 ----------------~rv~---------~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~e~vk~MkpGsVivDV 267 (371)
T COG0686 213 ----------------GRVH---------TLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTREMVKQMKPGSVIVDV 267 (371)
T ss_pred ----------------ceeE---------EEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhHHHHHhcCCCcEEEEE
Confidence 1000 0112234677889999999987622110 0012557777788999988764
Q ss_pred C
Q psy13746 171 T 171 (294)
Q Consensus 171 t 171 (294)
.
T Consensus 268 A 268 (371)
T COG0686 268 A 268 (371)
T ss_pred E
Confidence 3
No 260
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.73 E-value=0.031 Score=51.55 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=26.2
Q ss_pred ceEEE---ccccHHHHHHHHHCCC-------eEEEEeCCh
Q psy13746 15 PDGII---GLIGQAWAMIFASAGY-------KVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~ 44 (294)
||+|+ |.+|+.+|..++..|. ++.++|+++
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~ 41 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPP 41 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCC
Confidence 78899 9999999999998663 599999987
No 261
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.71 E-value=0.038 Score=49.91 Aligned_cols=28 Identities=25% Similarity=0.464 Sum_probs=24.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| +.+|+++|..|.+.|..|+++.
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~h 189 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICH 189 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEec
Confidence 688899 6679999999999999999864
No 262
>PRK06199 ornithine cyclodeaminase; Validated
Probab=95.70 E-value=0.049 Score=51.40 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=33.9
Q ss_pred CccceEEE--ccccHHHHHHHHH-C-C-CeEEEEeCChHHHHHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-A-G-YKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~-G-~~V~~~d~~~~~~~~~~~~ 53 (294)
..++++|| |.+++.-...++. . . -+|.+|+|++++.++..+.
T Consensus 154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~ 200 (379)
T PRK06199 154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATW 200 (379)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHH
Confidence 45789999 9999999888876 3 2 4899999999998776544
No 263
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.68 E-value=0.063 Score=47.46 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=29.0
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+
T Consensus 16 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 16 TLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 799999999999999999999999887665543
No 264
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=95.65 E-value=0.062 Score=49.59 Aligned_cols=31 Identities=23% Similarity=0.236 Sum_probs=26.0
Q ss_pred ceEEE---ccccHHHHHHHHHCCC-------eEEEEeCChH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGY-------KVSLYDVLSE 45 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~-------~V~~~d~~~~ 45 (294)
||+|+ |.+|+.+|..++..|. ++.++|++++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~ 41 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPA 41 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCc
Confidence 58888 8899999999998654 5999999764
No 265
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.65 E-value=0.043 Score=50.68 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=27.0
Q ss_pred cceEEE---ccccHHHHHHHHHCC-------CeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAG-------YKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G-------~~V~~~d~~~~ 45 (294)
.||+|+ |.+|+.+|..++..| .+|.++|+++.
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~ 44 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPA 44 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCc
Confidence 378899 999999999998854 58999999764
No 266
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.59 E-value=0.1 Score=44.76 Aligned_cols=39 Identities=23% Similarity=0.213 Sum_probs=32.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.++..+++.|++|++.+|+++...+..+
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLP 49 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHH
Confidence 456566 899999999999999999999999877655433
No 267
>PRK05086 malate dehydrogenase; Provisional
Probab=95.57 E-value=0.067 Score=49.12 Aligned_cols=32 Identities=38% Similarity=0.627 Sum_probs=26.2
Q ss_pred cceEEE---ccccHHHHHHHHH---CCCeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFAS---AGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~---~G~~V~~~d~~~~ 45 (294)
+||+|| |.+|+.+|..+.. .++++.++|+++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~ 38 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV 38 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC
Confidence 489999 7899999998855 3568999999854
No 268
>KOG1014|consensus
Probab=95.57 E-value=0.06 Score=48.80 Aligned_cols=72 Identities=18% Similarity=0.255 Sum_probs=54.6
Q ss_pred ccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchH
Q psy13746 13 FYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSE 88 (294)
Q Consensus 13 ~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~ 88 (294)
..+.+|| .-+|++.|+.||+.|++|.+.-|++++++...+.|.+.+ +++|-....|..
T Consensus 48 ~g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~------------------~vev~~i~~Dft 109 (312)
T KOG1014|consen 48 LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKY------------------KVEVRIIAIDFT 109 (312)
T ss_pred cCCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHh------------------CcEEEEEEEecC
Confidence 3478888 679999999999999999999999999999988887532 456666665554
Q ss_pred HHHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTLQ 102 (294)
Q Consensus 89 ~~~~~~~~~~~~l~ 102 (294)
.-+...+.+++.+.
T Consensus 110 ~~~~~ye~i~~~l~ 123 (312)
T KOG1014|consen 110 KGDEVYEKLLEKLA 123 (312)
T ss_pred CCchhHHHHHHHhc
Confidence 43335665555553
No 269
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.54 E-value=0.034 Score=53.04 Aligned_cols=38 Identities=16% Similarity=0.077 Sum_probs=32.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~ 51 (294)
++|.|| |-||+.+|..|+..|. ++++++|++++.+...
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La 222 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKIT 222 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 578999 9999999999999995 7999999988765543
No 270
>PRK07890 short chain dehydrogenase; Provisional
Probab=95.50 E-value=0.084 Score=46.19 Aligned_cols=41 Identities=22% Similarity=0.175 Sum_probs=33.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 49 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEI 49 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 345455 89999999999999999999999998877665544
No 271
>PRK09186 flagellin modification protein A; Provisional
Probab=95.49 E-value=0.099 Score=45.69 Aligned_cols=41 Identities=27% Similarity=0.238 Sum_probs=34.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 5 k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l 48 (256)
T PRK09186 5 KTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESL 48 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHH
Confidence 345455 89999999999999999999999998887766554
No 272
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.48 E-value=0.085 Score=49.01 Aligned_cols=31 Identities=29% Similarity=0.257 Sum_probs=28.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|| |.+|+.+|..|+.+|+ +++++|.+.
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 578999 9999999999999998 899999986
No 273
>PRK07814 short chain dehydrogenase; Provisional
Probab=95.46 E-value=0.099 Score=46.18 Aligned_cols=41 Identities=24% Similarity=0.274 Sum_probs=33.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|. |.+|..+|..|++.|++|++++|+++.+++..+.+
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 54 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQI 54 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 455555 78999999999999999999999998877665544
No 274
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.45 E-value=0.11 Score=44.90 Aligned_cols=43 Identities=28% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|..++|.|. |.+|..++..|++.|++|++++++++..+...+.
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~ 48 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAE 48 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHH
Confidence 333567676 8999999999999999999999998877654443
No 275
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.42 E-value=0.086 Score=46.76 Aligned_cols=39 Identities=23% Similarity=0.143 Sum_probs=32.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|.+.+++++.+++..+
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 47 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAA 47 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 455555 899999999999999999999999988776544
No 276
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.40 E-value=0.095 Score=51.84 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=33.7
Q ss_pred ccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 13 FYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 13 ~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
-.++.+| |.+|+.++..|++.|++|++++|+.++++...+.
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~ 123 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQS 123 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 4455555 8999999999999999999999999887665443
No 277
>PRK09242 tropinone reductase; Provisional
Probab=95.39 E-value=0.095 Score=45.97 Aligned_cols=46 Identities=20% Similarity=0.109 Sum_probs=35.8
Q ss_pred CCCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 10 QGGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 10 ~~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++.-+++.|. |.+|+.+|..|++.|++|++.+++++.+++..+.+.
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~ 54 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELA 54 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 4443445454 799999999999999999999999988776655543
No 278
>PRK05867 short chain dehydrogenase; Provisional
Probab=95.38 E-value=0.094 Score=45.95 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=33.7
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++++| |.+|+.+|..|++.|++|.+.+++++.++...+.+
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l 53 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEI 53 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence 45555 78999999999999999999999998887766554
No 279
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.32 E-value=0.055 Score=48.88 Aligned_cols=28 Identities=7% Similarity=0.192 Sum_probs=25.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|++++
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~ch 189 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCH 189 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEe
Confidence 688899 9999999999999999999885
No 280
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=95.31 E-value=0.056 Score=49.92 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=28.1
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
|.+|+ |-.|+++|..++-.|.+|.++++||-.
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~ 244 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIR 244 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchH
Confidence 44555 999999999999999999999999955
No 281
>PRK08643 acetoin reductase; Validated
Probab=95.30 E-value=0.11 Score=45.60 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=31.3
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+.+|..|++.|++|.+.+++++.+++....+.
T Consensus 12 ~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08643 12 QGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS 47 (256)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 889999999999999999999999988776655443
No 282
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.30 E-value=0.19 Score=45.23 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=52.0
Q ss_pred cceEEE--ccccHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 14 YPDGII--GLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~--~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
++|++| |-+-...-..... .|..|..+|+++++.+.+++-+..
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~--------------------------------- 168 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVAS--------------------------------- 168 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH----------------------------------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhh---------------------------------
Confidence 589999 7776654433333 256799999999998877653320
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeec-c---ChhhhccCCcEEEEcCCc--chHHHHHHHHHHhcccCC
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT-P---VLRECLEDAIFIQESVPE--ILQIKHQVYRAIDIFMSS 163 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~-~---~~~~a~~~aDlVieavpe--~~~~k~~~~~~l~~~~~~ 163 (294)
.+ |+ ..++++. . +....++++|+|+.+.-. +.+-|.+++.++.+++++
T Consensus 169 ----------~~------~L----------~~~m~f~~~d~~~~~~dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ 222 (276)
T PF03059_consen 169 ----------DL------GL----------SKRMSFITADVLDVTYDLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAP 222 (276)
T ss_dssp ------------------HH-----------SSEEEEES-GGGG-GG----SEEEE-TT-S----SHHHHHHHHHHHS-T
T ss_pred ----------cc------cc----------cCCeEEEecchhccccccccCCEEEEhhhcccccchHHHHHHHHHhhCCC
Confidence 00 10 0122321 1 222236889999997543 333599999999999999
Q ss_pred CeEEEe
Q psy13746 164 NTILSS 169 (294)
Q Consensus 164 ~~ii~s 169 (294)
|++|+.
T Consensus 223 ga~l~~ 228 (276)
T PF03059_consen 223 GARLVV 228 (276)
T ss_dssp TSEEEE
T ss_pred CcEEEE
Confidence 998763
No 283
>PRK06172 short chain dehydrogenase; Provisional
Probab=95.29 E-value=0.13 Score=44.93 Aligned_cols=41 Identities=29% Similarity=0.199 Sum_probs=34.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALI 51 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 455555 89999999999999999999999998877665544
No 284
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.29 E-value=0.065 Score=48.37 Aligned_cols=28 Identities=18% Similarity=0.355 Sum_probs=25.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|++++
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~ch 190 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCH 190 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688899 9999999999999999999876
No 285
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=95.29 E-value=0.095 Score=46.76 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=26.7
Q ss_pred cceEEE--ccccHHHHHHHHHCC---Ce-EEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG---YK-VSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G---~~-V~~~d~~~~~~~ 48 (294)
.||+|| |.||+.++..+.+.+ ++ +.++|+++++.+
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~ 43 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPP 43 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHH
Confidence 689999 999999999987643 44 457888875543
No 286
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.28 E-value=0.11 Score=44.98 Aligned_cols=41 Identities=27% Similarity=0.328 Sum_probs=33.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|. |.+|+.++..|++.|++|++.+|+++..+...+.+
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAEL 50 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 455555 88999999999999999999999998776655443
No 287
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.27 E-value=0.096 Score=46.95 Aligned_cols=30 Identities=10% Similarity=0.214 Sum_probs=23.9
Q ss_pred cceEEE---ccccHHHHHHHHH-CCCeEE-EEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFAS-AGYKVS-LYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~-~G~~V~-~~d~~ 43 (294)
.||+|+ |.||+.++..+.. .++++. ++|+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~ 36 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERH 36 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence 489999 8899999999986 577755 67843
No 288
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=95.26 E-value=0.048 Score=51.69 Aligned_cols=40 Identities=23% Similarity=0.241 Sum_probs=35.1
Q ss_pred cceEEE--ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|| |-||.-.|.+|+.+| .+|++.+|+.++..+..++
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~ 221 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKK 221 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHH
Confidence 578889 999999999999999 6899999999988766543
No 289
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=95.26 E-value=0.057 Score=49.09 Aligned_cols=28 Identities=11% Similarity=0.274 Sum_probs=25.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvch 198 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVH 198 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 689999 8999999999999999999885
No 290
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.26 E-value=0.12 Score=45.13 Aligned_cols=41 Identities=24% Similarity=0.239 Sum_probs=34.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++++|+++..++....+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 48 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEAL 48 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 456666 89999999999999999999999998877665544
No 291
>PRK07326 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.12 Score=44.47 Aligned_cols=41 Identities=27% Similarity=0.253 Sum_probs=34.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|+ |.+|+.++..|++.|++|++.+|+++...+..+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAEL 50 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHH
Confidence 456666 89999999999999999999999998877665543
No 292
>PRK07062 short chain dehydrogenase; Provisional
Probab=95.25 E-value=0.095 Score=46.22 Aligned_cols=41 Identities=20% Similarity=0.269 Sum_probs=34.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++.+| |.+|+.+|..|++.|++|++.+|+++.+++..+.+.
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~ 53 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLR 53 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 45555 789999999999999999999999988877665543
No 293
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.25 E-value=0.16 Score=43.93 Aligned_cols=31 Identities=19% Similarity=0.124 Sum_probs=27.9
Q ss_pred eEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 16 DGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 16 i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
|+|+ |.+|++++..|++.|++|.+.-|++..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~ 34 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSS 34 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccch
Confidence 5677 999999999999999999999999843
No 294
>PRK06194 hypothetical protein; Provisional
Probab=95.24 E-value=0.11 Score=46.39 Aligned_cols=41 Identities=29% Similarity=0.294 Sum_probs=33.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|+++|++++.+++..+.+
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 50 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAEL 50 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence 455555 78999999999999999999999988777655543
No 295
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.22 E-value=0.061 Score=48.52 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=25.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~ch 189 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCH 189 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEc
Confidence 588899 8999999999999999998875
No 296
>KOG1495|consensus
Probab=95.20 E-value=0.25 Score=44.09 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=32.4
Q ss_pred ccceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHHHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQIE 48 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~~~ 48 (294)
..||.|+ |.+|.+.|..++.+|. ++.++|.++++++
T Consensus 20 ~~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklk 59 (332)
T KOG1495|consen 20 HNKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLK 59 (332)
T ss_pred CceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhh
Confidence 5799999 9999999999998885 8999999998765
No 297
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.12 Score=47.85 Aligned_cols=62 Identities=24% Similarity=0.204 Sum_probs=44.3
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+.+.. + ...+.++..|+.+ ++++++.+.+.
T Consensus 17 ~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~----~-------------g~~~~~~~~Dv~d~~~v~~~~~~~~ 79 (330)
T PRK06139 17 SGIGQATAEAFARRGARLVLAARDEEALQAVAEECRA----L-------------GAEVLVVPTDVTDADQVKALATQAA 79 (330)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHh----c-------------CCcEEEEEeeCCCHHHHHHHHHHHH
Confidence 7899999999999999999999999988876655431 0 0123345667776 55555555443
No 298
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.13 Score=46.55 Aligned_cols=41 Identities=22% Similarity=0.144 Sum_probs=33.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+|+++.+++..+.+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l 84 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRI 84 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 344444 89999999999999999999999998887765544
No 299
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.15 E-value=0.12 Score=45.36 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=33.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|. |.+|+.++..|++.|++|.+++++++.+++..+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 44 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAE 44 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 456666 8999999999999999999999999887766543
No 300
>PRK07109 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.12 Score=47.82 Aligned_cols=42 Identities=31% Similarity=0.225 Sum_probs=34.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++|.|. |.+|+.+|..|++.|++|++++++++.+++..+.+.
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~ 53 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIR 53 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence 344444 889999999999999999999999988877665543
No 301
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=95.13 E-value=0.36 Score=44.44 Aligned_cols=32 Identities=9% Similarity=0.205 Sum_probs=26.6
Q ss_pred ccceEEE--ccccHHHHHHHHHC-CCeEE-EEeCCh
Q psy13746 13 FYPDGII--GLIGQAWAMIFASA-GYKVS-LYDVLS 44 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~~~ 44 (294)
..||+|+ |.||+..+..+.+. ++++. ++|+++
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~ 38 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRG 38 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCc
Confidence 3689999 99999999988765 78876 589985
No 302
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=95.13 E-value=0.12 Score=45.57 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=28.4
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
|.+|+.+|..|++.|++|++.+++.+.+++..
T Consensus 15 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~ 46 (262)
T TIGR03325 15 SGLGRAIVDRFVAEGARVAVLDKSAAGLQELE 46 (262)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 78999999999999999999999987766543
No 303
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.12 E-value=0.074 Score=48.32 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=25.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~h 189 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAH 189 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 688899 8999999999999999998874
No 304
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.12 E-value=0.19 Score=43.93 Aligned_cols=30 Identities=27% Similarity=0.221 Sum_probs=27.6
Q ss_pred cceEEE--ccccHHHHHHHHHCCC---eEEEEeCC
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY---KVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~---~V~~~d~~ 43 (294)
++|.|+ |.+|+++|..++..|. +++++||+
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 588888 9999999999999997 59999999
No 305
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=95.10 E-value=0.13 Score=45.02 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=35.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
+++.|. |.+|+.++..|++.|++|.+.+++++..++..+.+.
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 52 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEIN 52 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Confidence 455555 899999999999999999999999988877666553
No 306
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.10 E-value=0.081 Score=47.73 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=25.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtich 188 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAH 188 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688899 8999999999999999999774
No 307
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=95.09 E-value=0.15 Score=44.67 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=34.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++++++++.++...+.+
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 55 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAAL 55 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 455555 89999999999999999999999998877665544
No 308
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.08 E-value=0.074 Score=47.96 Aligned_cols=28 Identities=14% Similarity=0.232 Sum_probs=25.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtich 187 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAH 187 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEC
Confidence 688899 8999999999999999999774
No 309
>PRK05876 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.12 Score=46.18 Aligned_cols=40 Identities=33% Similarity=0.331 Sum_probs=33.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l 50 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHL 50 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45555 89999999999999999999999998877665544
No 310
>PRK06949 short chain dehydrogenase; Provisional
Probab=95.07 E-value=0.15 Score=44.57 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=34.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l 53 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEI 53 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 566666 99999999999999999999999998877665543
No 311
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.06 E-value=0.079 Score=47.90 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=25.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtich 186 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAH 186 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeC
Confidence 688899 8999999999999999999765
No 312
>PRK07063 short chain dehydrogenase; Provisional
Probab=95.04 E-value=0.15 Score=44.71 Aligned_cols=36 Identities=36% Similarity=0.337 Sum_probs=31.7
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+.+.
T Consensus 17 ~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~ 52 (260)
T PRK07063 17 QGIGAAIARAFAREGAAVALADLDAALAERAAAAIA 52 (260)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 799999999999999999999999988877665543
No 313
>PRK06196 oxidoreductase; Provisional
Probab=95.02 E-value=0.14 Score=46.64 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=30.0
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|.+|+.+|..|++.|++|++.+|+++..++..+.
T Consensus 36 ggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~ 69 (315)
T PRK06196 36 SGLGLETTRALAQAGAHVIVPARRPDVAREALAG 69 (315)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 8899999999999999999999999887765543
No 314
>PRK12939 short chain dehydrogenase; Provisional
Probab=95.02 E-value=0.15 Score=44.16 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=34.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~ 51 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAAL 51 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 456555 89999999999999999999999998877665543
No 315
>PRK05884 short chain dehydrogenase; Provisional
Probab=95.02 E-value=0.096 Score=45.27 Aligned_cols=38 Identities=24% Similarity=0.230 Sum_probs=32.2
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++.|. |.+|+++|..|++.|++|++.++++++++...+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 56566 789999999999999999999999988765543
No 316
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.01 E-value=0.081 Score=47.63 Aligned_cols=28 Identities=14% Similarity=0.266 Sum_probs=25.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~ch 189 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICH 189 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeC
Confidence 688999 8999999999999999999886
No 317
>PRK06138 short chain dehydrogenase; Provisional
Probab=95.00 E-value=0.16 Score=44.22 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=33.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|. |.+|+.+|..|++.|++|++.+++++..+...+.
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~ 48 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAA 48 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHH
Confidence 456566 8999999999999999999999998876655443
No 318
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.00 E-value=0.068 Score=48.38 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=26.2
Q ss_pred cceEEE--c-cccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII--G-LIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii--G-~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
++|.|+ | ..|+++|..|+..|.+|+++++
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 688899 5 5999999999999999999986
No 319
>PRK07478 short chain dehydrogenase; Provisional
Probab=94.98 E-value=0.16 Score=44.51 Aligned_cols=36 Identities=28% Similarity=0.312 Sum_probs=31.6
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|..+|..|++.|++|++.+++++.++...+.+.
T Consensus 16 ~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 51 (254)
T PRK07478 16 SGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIR 51 (254)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 789999999999999999999999988877665543
No 320
>PRK05872 short chain dehydrogenase; Provisional
Probab=94.98 E-value=0.18 Score=45.63 Aligned_cols=40 Identities=18% Similarity=0.137 Sum_probs=32.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|. |.+|..+|..|++.|++|.+.+++++.++...+.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~ 52 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAE 52 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 344444 8899999999999999999999999887765543
No 321
>PRK06180 short chain dehydrogenase; Provisional
Probab=94.97 E-value=0.13 Score=45.92 Aligned_cols=37 Identities=19% Similarity=-0.061 Sum_probs=31.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
++|.|. |.+|+.++..|++.|++|++.+++++.++..
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l 44 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADF 44 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHH
Confidence 445555 8999999999999999999999998876544
No 322
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.96 E-value=0.16 Score=44.68 Aligned_cols=31 Identities=13% Similarity=-0.079 Sum_probs=26.3
Q ss_pred cceEEE--c----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII--G----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.|+++| | -+|+++|..|++.|++|++.++++
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~ 43 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND 43 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch
Confidence 366666 3 499999999999999999999984
No 323
>PRK07102 short chain dehydrogenase; Provisional
Probab=94.93 E-value=0.13 Score=44.79 Aligned_cols=40 Identities=28% Similarity=0.203 Sum_probs=33.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++|.|. |.+|..+|..|++.|++|++.+++++..+...+.
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~ 44 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADD 44 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHH
Confidence 456566 8999999999999999999999999877655443
No 324
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.88 E-value=0.15 Score=46.23 Aligned_cols=32 Identities=19% Similarity=0.283 Sum_probs=27.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCCe-EEEEeCChH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYK-VSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~-V~~~d~~~~ 45 (294)
+++.|+ |-.|+++|..|+..|.+ |++++|+++
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~ 161 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD 161 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch
Confidence 456666 88899999999999986 999999974
No 325
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.86 E-value=0.09 Score=47.42 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=25.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~ch 188 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCH 188 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688889 8999999999999999999766
No 326
>PRK06101 short chain dehydrogenase; Provisional
Probab=94.85 E-value=0.11 Score=45.29 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=31.0
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++.|. |.+|+.+|..|++.|++|++++|+++.+++..
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~ 42 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELH 42 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH
Confidence 44444 89999999999999999999999988766543
No 327
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=94.84 E-value=0.16 Score=44.77 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=29.2
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+
T Consensus 16 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 16 SGIGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 789999999999999999999999988766543
No 328
>PRK07677 short chain dehydrogenase; Provisional
Probab=94.84 E-value=0.18 Score=44.04 Aligned_cols=40 Identities=33% Similarity=0.291 Sum_probs=32.9
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++.|. |.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 3 ~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 45 (252)
T PRK07677 3 VVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEI 45 (252)
T ss_pred EEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44444 78999999999999999999999988877665544
No 329
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=94.84 E-value=0.099 Score=45.54 Aligned_cols=64 Identities=25% Similarity=0.274 Sum_probs=46.0
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
+-+|+++|..|++.|++|++.++++++++...+.+.+ ..|.+++.+|+.+ +.++...+.+.
T Consensus 6 ~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~------------------~~~~~~~~~D~~~~~~v~~~~~~~~ 67 (241)
T PF13561_consen 6 SGIGRAIARALAEEGANVILTDRNEEKLADALEELAK------------------EYGAEVIQCDLSDEESVEALFDEAV 67 (241)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHH------------------HTTSEEEESCTTSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHH------------------HcCCceEeecCcchHHHHHHHHHHH
Confidence 3579999999999999999999999987655554432 1245578888866 55666666554
Q ss_pred HHH
Q psy13746 99 HTL 101 (294)
Q Consensus 99 ~~l 101 (294)
+.+
T Consensus 68 ~~~ 70 (241)
T PF13561_consen 68 ERF 70 (241)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
No 330
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.83 E-value=0.11 Score=46.84 Aligned_cols=29 Identities=14% Similarity=0.329 Sum_probs=25.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
++|+|| ..+|+++|..|.+.|..|+++..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs 191 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHR 191 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEEC
Confidence 688899 66999999999999999998864
No 331
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.83 E-value=0.1 Score=47.19 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=25.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|++++
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~h 195 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCH 195 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEe
Confidence 688899 6699999999999999999888
No 332
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.83 E-value=0.06 Score=48.63 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=25.3
Q ss_pred cceEEE--c-cccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII--G-LIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii--G-~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| | .+|+++|..|.+.|..|++++
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h 188 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCH 188 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEe
Confidence 689999 4 899999999999999999885
No 333
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.83 E-value=0.15 Score=44.48 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=32.1
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+|.|. |.+|..+|..|+..|++|++.+++++.++...+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 45566 889999999999999999999999987765443
No 334
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.81 E-value=0.19 Score=44.02 Aligned_cols=42 Identities=24% Similarity=0.162 Sum_probs=34.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++|.|. |.+|+.+|..|++.|++|.+.+++++.++...+.+.
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~ 55 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK 55 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 455555 899999999999999999999999988776665543
No 335
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.81 E-value=0.21 Score=43.81 Aligned_cols=39 Identities=28% Similarity=0.297 Sum_probs=33.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+++.|. |.+|+.+|..|++.|++|++.+++++..+...+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 567777 899999999999999999999999887665443
No 336
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.75 E-value=0.19 Score=45.86 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=34.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
++++| +.+|..+|..|++.|++|++.+|++++.+++.+.+.
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~ 59 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIR 59 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 55566 889999999999999999999999998877766554
No 337
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=94.74 E-value=0.18 Score=44.17 Aligned_cols=36 Identities=25% Similarity=0.243 Sum_probs=31.5
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+++|..|++.|++|++.+++++.+++..+.+.
T Consensus 19 ~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~ 54 (254)
T PRK08085 19 QGIGFLLATGLAEYGAEIIINDITAERAELAVAKLR 54 (254)
T ss_pred ChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH
Confidence 889999999999999999999999988777665543
No 338
>PRK07831 short chain dehydrogenase; Provisional
Probab=94.73 E-value=0.31 Score=42.89 Aligned_cols=35 Identities=20% Similarity=0.254 Sum_probs=30.5
Q ss_pred cccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 21 LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 21 ~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
-+|+.+|..|++.|++|++.|++++.++...+.+.
T Consensus 29 gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~ 63 (262)
T PRK07831 29 GIGSATARRALEEGARVVISDIHERRLGETADELA 63 (262)
T ss_pred cHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 49999999999999999999999988877766554
No 339
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.72 E-value=0.25 Score=42.97 Aligned_cols=41 Identities=32% Similarity=0.345 Sum_probs=33.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|. |.+|..++..|++.|++|++.+|+++..+...+.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~ 50 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQI 50 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 455555 89999999999999999999999987766555443
No 340
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.72 E-value=0.11 Score=47.05 Aligned_cols=28 Identities=14% Similarity=0.293 Sum_probs=25.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtich 190 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICH 190 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688899 8999999999999999999775
No 341
>PRK08589 short chain dehydrogenase; Validated
Probab=94.71 E-value=0.21 Score=44.43 Aligned_cols=63 Identities=24% Similarity=0.284 Sum_probs=42.8
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
|.+|+.+|..|++.|++|++.+++ +.+++..+.+.+. ...+.++.+|+.+ +.++...+.+.
T Consensus 16 ~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~-----------------~~~~~~~~~Dl~~~~~~~~~~~~~~ 77 (272)
T PRK08589 16 TGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSN-----------------GGKAKAYHVDISDEQQVKDFASEIK 77 (272)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhc-----------------CCeEEEEEeecCCHHHHHHHHHHHH
Confidence 789999999999999999999999 6666555444310 0124556677776 45555555444
Q ss_pred HH
Q psy13746 99 HT 100 (294)
Q Consensus 99 ~~ 100 (294)
+.
T Consensus 78 ~~ 79 (272)
T PRK08589 78 EQ 79 (272)
T ss_pred HH
Confidence 43
No 342
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.68 E-value=0.091 Score=47.64 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=25.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~ch 191 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVH 191 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeC
Confidence 688888 8999999999999999999776
No 343
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.67 E-value=0.11 Score=46.81 Aligned_cols=28 Identities=14% Similarity=0.290 Sum_probs=25.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtich 188 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAH 188 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688899 8999999999999999999864
No 344
>PRK06057 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.18 Score=44.19 Aligned_cols=42 Identities=26% Similarity=0.064 Sum_probs=34.1
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.-++|.|+ |.+|..++..+++.|++|++.++++..++...+
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~ 49 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAAD 49 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 344566666 899999999999999999999999887665443
No 345
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.28 Score=42.43 Aligned_cols=41 Identities=22% Similarity=0.214 Sum_probs=34.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|++++|+++.++...+.+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAI 50 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence 555555 89999999999999999999999998877655443
No 346
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=94.63 E-value=0.18 Score=46.87 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=25.7
Q ss_pred cceEEE--ccccHHHHHHHHH-CCCeEE-EEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFAS-AGYKVS-LYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~-~G~~V~-~~d~~~~~~~ 48 (294)
.||+|+ |.||+.++..+.. .++++. ++|++++...
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~ 40 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEA 40 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHH
Confidence 489999 9999999998876 456655 6676654433
No 347
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=94.63 E-value=0.16 Score=44.53 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=30.1
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|.+|+.+|..|++.|++|++.|++.+..++..+.
T Consensus 16 ~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~ 49 (257)
T PRK07067 16 SGIGEAVAERYLAEGARVVIADIKPARARLAALE 49 (257)
T ss_pred chHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH
Confidence 8999999999999999999999999887765443
No 348
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.59 E-value=0.12 Score=46.75 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=24.5
Q ss_pred cceEEE---ccccHHHHHHHHH--CCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFAS--AGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~--~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+ +|..|+++.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvch 191 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCH 191 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeC
Confidence 688888 8999999999998 788898775
No 349
>PRK06179 short chain dehydrogenase; Provisional
Probab=94.57 E-value=0.097 Score=46.28 Aligned_cols=60 Identities=22% Similarity=0.179 Sum_probs=43.3
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQI 90 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~ 90 (294)
+|.|. |.+|+.+|..|++.|++|++.+++++..+. ..++.++..|+.+ +.+
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~-------------------------~~~~~~~~~D~~d~~~~ 60 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP-------------------------IPGVELLELDVTDDASV 60 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc-------------------------cCCCeeEEeecCCHHHH
Confidence 44444 899999999999999999999999765431 1246677788877 556
Q ss_pred HHHHHHHHH
Q psy13746 91 ENAKNTIQH 99 (294)
Q Consensus 91 ~~~~~~~~~ 99 (294)
+++.+.+.+
T Consensus 61 ~~~~~~~~~ 69 (270)
T PRK06179 61 QAAVDEVIA 69 (270)
T ss_pred HHHHHHHHH
Confidence 555555443
No 350
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=94.56 E-value=0.29 Score=42.89 Aligned_cols=52 Identities=25% Similarity=0.241 Sum_probs=38.9
Q ss_pred CCCCCCCCCCCCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 1 MSNVASFPAQGGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 1 ~~~~~~~~~~~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|++...+ ++.-++|.|. |.+|+.+|..|++.|++|++.+++.+..+...+.+
T Consensus 1 ~~~~~~~--~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l 55 (255)
T PRK06113 1 MFNSDNL--RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI 55 (255)
T ss_pred CCCcccc--CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 5555433 3333556566 89999999999999999999999988877655544
No 351
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.1 Score=47.03 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=24.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.++|..|+++.
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~h 188 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICH 188 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeC
Confidence 688899 6999999999999999998764
No 352
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.49 E-value=0.25 Score=44.68 Aligned_cols=40 Identities=20% Similarity=0.110 Sum_probs=33.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++.+| |.+|+.+|..|++.|++|++.+|+++..+.+.+.+
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l 60 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARI 60 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44555 89999999999999999999999988877655444
No 353
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.46 E-value=0.13 Score=47.90 Aligned_cols=29 Identities=17% Similarity=0.222 Sum_probs=25.7
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
-++|+|| ..+|+++|..|.++|..|+++.
T Consensus 231 GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicH 262 (364)
T PLN02616 231 GKRAVVIGRSNIVGMPAALLLQREDATVSIVH 262 (364)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCeEEEeC
Confidence 3688899 8999999999999999999874
No 354
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.45 E-value=0.27 Score=43.16 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=34.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|. |.+|..+|..|++.|++|++.+++++.++.....+
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i 56 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL 56 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 455555 89999999999999999999999998877665544
No 355
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=94.45 E-value=0.13 Score=47.60 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=25.3
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEe
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYD 41 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d 41 (294)
-++|+|| ..+|+++|..|.+.|..|+++.
T Consensus 214 GK~vvVIGRS~iVGkPla~LL~~~~ATVTicH 245 (345)
T PLN02897 214 GKNAVVIGRSNIVGLPMSLLLQRHDATVSTVH 245 (345)
T ss_pred CCEEEEECCCccccHHHHHHHHHCCCEEEEEc
Confidence 3688889 8999999999999999998765
No 356
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.44 E-value=0.12 Score=46.54 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=24.5
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
++|.|+ ...|+++|..+...|..|++...+
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~ 185 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSK 185 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecC
Confidence 678888 588999998888888888887744
No 357
>PRK06114 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.28 Score=43.00 Aligned_cols=40 Identities=28% Similarity=0.420 Sum_probs=30.7
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChH-HHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSE-QIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~-~~~~~~~~i 54 (294)
++.+| |.+|+.+|..|++.|++|++.+++.+ .+++..+.+
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l 53 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHI 53 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH
Confidence 55566 78999999999999999999999764 344444433
No 358
>PRK05693 short chain dehydrogenase; Provisional
Probab=94.43 E-value=0.19 Score=44.63 Aligned_cols=31 Identities=35% Similarity=0.404 Sum_probs=27.7
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
|.+|+.+|..+++.|++|++.+++++.++..
T Consensus 11 ggiG~~la~~l~~~G~~V~~~~r~~~~~~~~ 41 (274)
T PRK05693 11 SGIGRALADAFKAAGYEVWATARKAEDVEAL 41 (274)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 8999999999999999999999998776543
No 359
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=94.42 E-value=0.21 Score=38.82 Aligned_cols=100 Identities=18% Similarity=0.135 Sum_probs=57.5
Q ss_pred cceEEE------ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch
Q psy13746 14 YPDGII------GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS 87 (294)
Q Consensus 14 ~~i~ii------G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 87 (294)
++|+|| +..|..+...+.+.|++|+.++...+.+.
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~--------------------------------------- 41 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEIL--------------------------------------- 41 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEET---------------------------------------
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEEC---------------------------------------
Confidence 468888 78899999999999999998876542211
Q ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEE
Q psy13746 88 EQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTIL 167 (294)
Q Consensus 88 ~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii 167 (294)
| +....++.|.-...|+++.++|.+. -.++++++.+. ..+.++
T Consensus 42 --------------------G--------------~~~y~sl~e~p~~iDlavv~~~~~~--~~~~v~~~~~~-g~~~v~ 84 (116)
T PF13380_consen 42 --------------------G--------------IKCYPSLAEIPEPIDLAVVCVPPDK--VPEIVDEAAAL-GVKAVW 84 (116)
T ss_dssp --------------------T--------------EE-BSSGGGCSST-SEEEE-S-HHH--HHHHHHHHHHH-T-SEEE
T ss_pred --------------------c--------------EEeeccccCCCCCCCEEEEEcCHHH--HHHHHHHHHHc-CCCEEE
Confidence 1 3455677762378999999999765 34777777654 445555
Q ss_pred EecCCCCCHHHHHhhc-CCCCceee
Q psy13746 168 SSSTSSFLPSVLSEHS-THRSQFIV 191 (294)
Q Consensus 168 ~s~tSt~~~~~ia~~l-~~~~~~ig 191 (294)
. .+++... ++.+.+ .+..+++|
T Consensus 85 ~-~~g~~~~-~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 85 L-QPGAESE-ELIEAAREAGIRVIG 107 (116)
T ss_dssp E--TTS--H-HHHHHHHHTT-EEEE
T ss_pred E-EcchHHH-HHHHHHHHcCCEEEe
Confidence 4 3444333 333332 24445554
No 360
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=94.40 E-value=0.32 Score=42.08 Aligned_cols=41 Identities=20% Similarity=0.232 Sum_probs=33.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.++..|++.|++|++.+|+++.+....+.+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l 50 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELV 50 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 456666 89999999999999999999999987766554443
No 361
>PRK08251 short chain dehydrogenase; Provisional
Probab=94.40 E-value=0.23 Score=43.18 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++.+++++.++...+.+
T Consensus 12 ~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 46 (248)
T PRK08251 12 SGLGAGMAREFAAKGRDLALCARRTDRLEELKAEL 46 (248)
T ss_pred CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence 89999999999999999999999998877665443
No 362
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.39 E-value=0.17 Score=45.82 Aligned_cols=32 Identities=16% Similarity=0.214 Sum_probs=28.7
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+|.|. |.+|+.++..|++.|++|++++++++.
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~ 36 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSD 36 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCCEEEEEEecCcc
Confidence 56677 999999999999999999999998754
No 363
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=94.39 E-value=0.32 Score=42.31 Aligned_cols=41 Identities=24% Similarity=0.226 Sum_probs=33.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|..++..|++.|++|++.+++++..++..+.+
T Consensus 13 k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l 56 (247)
T PRK08945 13 RIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEI 56 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence 344444 89999999999999999999999998877655444
No 364
>PRK06720 hypothetical protein; Provisional
Probab=94.39 E-value=0.3 Score=40.59 Aligned_cols=39 Identities=26% Similarity=0.252 Sum_probs=32.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++++| |.+|+++|..|+..|++|.++|++++.++...+.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~ 59 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEE 59 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 56666 5699999999999999999999998876655443
No 365
>PRK06940 short chain dehydrogenase; Provisional
Probab=94.38 E-value=0.18 Score=45.00 Aligned_cols=41 Identities=39% Similarity=0.379 Sum_probs=33.2
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|+++| |.+|+.+|..|+ .|++|++.|++++.+++..+.+
T Consensus 1 ~~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l 44 (275)
T PRK06940 1 MKEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTL 44 (275)
T ss_pred CCCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence 3577778 789999999996 8999999999988877655443
No 366
>PRK05717 oxidoreductase; Validated
Probab=94.34 E-value=0.27 Score=43.04 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=27.6
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
|.+|+.+|..|++.|++|++.|++++..++.
T Consensus 20 g~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~ 50 (255)
T PRK05717 20 RGIGLGIAAWLIAEGWQVVLADLDRERGSKV 50 (255)
T ss_pred chHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 8999999999999999999999998765543
No 367
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.34 E-value=0.15 Score=46.19 Aligned_cols=39 Identities=21% Similarity=0.266 Sum_probs=27.9
Q ss_pred cChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 127 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 127 ~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
.++.+.++.||+||.++.-.--++.+ ++++++++++...
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~i~~~-------~ik~GavVIDvGi 230 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLFIKEE-------MIAEKAVIVDVGT 230 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCHH-------HcCCCCEEEEecc
Confidence 46666789999999998754433333 4788999887553
No 368
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.32 E-value=0.34 Score=41.97 Aligned_cols=40 Identities=25% Similarity=0.208 Sum_probs=33.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++|.|+ |.+|..++..|++.|++|++.+|+++..+.....
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAE 48 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 466666 8999999999999999999999999887665443
No 369
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.32 E-value=0.29 Score=43.80 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=27.1
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
.|+++| | -+|+++|..|++.|++|++.+++.+
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~ 42 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEA 42 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHH
Confidence 367777 4 3899999999999999999999853
No 370
>PRK07074 short chain dehydrogenase; Provisional
Probab=94.29 E-value=0.27 Score=43.03 Aligned_cols=39 Identities=28% Similarity=0.314 Sum_probs=32.2
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++.|. |.+|+.+|..|++.|++|++.+++++.++...+.
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~ 45 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADA 45 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 45455 7899999999999999999999999887665443
No 371
>PRK09072 short chain dehydrogenase; Provisional
Probab=94.28 E-value=0.33 Score=42.74 Aligned_cols=40 Identities=30% Similarity=0.265 Sum_probs=33.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
++|.|. |.+|..++..+++.|++|++.+++++.++.....
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAAR 48 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence 455555 8899999999999999999999999887765443
No 372
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=94.28 E-value=0.47 Score=35.78 Aligned_cols=40 Identities=20% Similarity=0.140 Sum_probs=27.7
Q ss_pred ceEEEccccHHHHHHHHH--CCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGIIGLIGQAWAMIFAS--AGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~iiG~mG~~iA~~~~~--~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.-||-=-..++..+++ .|.+|+.+|.+++.++.++++.
T Consensus 4 ~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~ 45 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERA 45 (112)
T ss_dssp EEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHH
Confidence 555552222344444555 8999999999999999887764
No 373
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=94.27 E-value=0.25 Score=43.29 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=32.7
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.|. |.+|+.+|..|++.|++|.++|++++..+...+.+
T Consensus 4 ~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~ 46 (259)
T PRK12384 4 VAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEI 46 (259)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 34444 89999999999999999999999988776655443
No 374
>PRK07832 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.29 Score=43.44 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=33.2
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++.|. |.+|+.+|..|++.|++|++++++++.++...+.+
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~ 44 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADA 44 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45555 89999999999999999999999998877665544
No 375
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.24 E-value=0.33 Score=41.94 Aligned_cols=41 Identities=29% Similarity=0.316 Sum_probs=33.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~i 54 (294)
++|.|+ |.+|..+|..|++.|++|++. +++++..+...+.+
T Consensus 6 ~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~ 50 (247)
T PRK05565 6 KVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEI 50 (247)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 466666 899999999999999999999 99988776655443
No 376
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.21 E-value=0.37 Score=41.51 Aligned_cols=39 Identities=21% Similarity=0.186 Sum_probs=33.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|..+++.|++.|++|++.+++++.++...+
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~ 47 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKK 47 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 466666 889999999999999999999999988766543
No 377
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=94.21 E-value=0.71 Score=40.02 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=71.0
Q ss_pred eeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCCCCCHHHHHhhcC--CC--CceeeeeecCCC
Q psy13746 123 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHST--HR--SQFIVAHPVNPP 198 (294)
Q Consensus 123 i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tSt~~~~~ia~~l~--~~--~~~ig~h~~~p~ 198 (294)
+..++|-.++++++|+||.=+|-.- ..-.+++++.+-+++++|++ ++.+++.+.....+. +. -+.-..||-.-|
T Consensus 127 ~~vttddreavedad~iitwlpkg~-~qpdiikkfiddipegaivt-hactipttkf~kifed~gredlnvtsyhpg~vp 204 (343)
T COG4074 127 IVVTTDDREAVEDADMIITWLPKGG-VQPDIIKKFIDDIPEGAIVT-HACTIPTTKFKKIFEDMGREDLNVTSYHPGTVP 204 (343)
T ss_pred eEEecCcHhhhcCCCeEEEeccCCC-CCccHHHHHHhcCCCCceEe-eecccchHHHHHHHHHhCccccceeccCCCCCc
Confidence 4566777779999999999888632 23467788888899999985 777888776555443 11 123334443323
Q ss_pred CCCCeEEEecCCCCCHHHHHHHHHHHHHcCCeeEEE
Q psy13746 199 YFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTL 234 (294)
Q Consensus 199 ~~~~lveiv~g~~t~~e~~~~~~~ll~~lG~~~v~v 234 (294)
....-+-|..| ..++++++.+-++-+.-....+.+
T Consensus 205 emkgqvyiaeg-yaseeavn~lyelg~karg~afk~ 239 (343)
T COG4074 205 EMKGQVYIAEG-YASEEAVNALYELGEKARGLAFKV 239 (343)
T ss_pred cccCcEEEecc-cccHHHHHHHHHHHHHhhcccccC
Confidence 33334445555 468899998888877765555554
No 378
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.20 E-value=0.65 Score=38.16 Aligned_cols=36 Identities=22% Similarity=0.086 Sum_probs=30.7
Q ss_pred CCC--CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 7 FPA--QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 7 ~~~--~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
||- +.+-++|.|| |.+|...+..|...|++|++++.
T Consensus 5 ~P~~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp 44 (157)
T PRK06719 5 YPLMFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSP 44 (157)
T ss_pred cceEEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence 665 4555789999 99999999999999999999953
No 379
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=94.20 E-value=0.33 Score=44.36 Aligned_cols=35 Identities=20% Similarity=0.156 Sum_probs=30.5
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|..+|..|++.|++|++.+|+++..+...+.+
T Consensus 16 ~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l 50 (322)
T PRK07453 16 SGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQEL 50 (322)
T ss_pred ChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh
Confidence 88999999999999999999999998877665543
No 380
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=94.16 E-value=0.26 Score=45.04 Aligned_cols=40 Identities=25% Similarity=0.189 Sum_probs=33.1
Q ss_pred cceEEE----ccccHHHHHHHHHCC-CeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAG-YKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G-~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.+| +.+|.++|..|+..| ++|++.+|++++.+++.+.
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~ 47 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKS 47 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHH
Confidence 456666 679999999999999 9999999999887765543
No 381
>PRK08177 short chain dehydrogenase; Provisional
Probab=94.14 E-value=0.15 Score=43.93 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=29.8
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIEN 49 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~ 49 (294)
+|.|. |.+|+.+|..|++.|++|++++++++..+.
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~ 40 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTA 40 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHH
Confidence 44455 899999999999999999999999877654
No 382
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=94.12 E-value=0.27 Score=45.70 Aligned_cols=34 Identities=32% Similarity=0.280 Sum_probs=29.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~ 47 (294)
.+|.|+ |.+|+.+|..|+.+|. +++++|.+.-..
T Consensus 25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~ 61 (339)
T PRK07688 25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEW 61 (339)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCH
Confidence 478899 9999999999999998 999999975433
No 383
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.12 E-value=0.36 Score=41.75 Aligned_cols=40 Identities=25% Similarity=0.252 Sum_probs=32.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|. |.+|+.++..|++.|++|++.+|+++..+...+.
T Consensus 8 ~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~ 50 (239)
T PRK07666 8 KNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEE 50 (239)
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 455555 7999999999999999999999998876655443
No 384
>PRK06924 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.2 Score=43.67 Aligned_cols=31 Identities=19% Similarity=-0.021 Sum_probs=27.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++|.|. |.+|+++|..|++.|++|++.++++
T Consensus 2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~ 35 (251)
T PRK06924 2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTE 35 (251)
T ss_pred cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCc
Confidence 355555 8999999999999999999999987
No 385
>PRK06914 short chain dehydrogenase; Provisional
Probab=94.08 E-value=0.33 Score=43.08 Aligned_cols=39 Identities=21% Similarity=0.076 Sum_probs=32.4
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
.+.|. |.+|+.+|..|++.|++|++++++++.++...+.
T Consensus 5 ~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 46 (280)
T PRK06914 5 IAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQ 46 (280)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence 44454 8999999999999999999999999887765443
No 386
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=94.07 E-value=0.33 Score=43.13 Aligned_cols=35 Identities=37% Similarity=0.453 Sum_probs=30.4
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|.+++++++..+...+.+
T Consensus 20 ~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~ 54 (278)
T PRK08277 20 GVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEI 54 (278)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 78999999999999999999999988776655544
No 387
>PRK08263 short chain dehydrogenase; Provisional
Probab=94.05 E-value=0.28 Score=43.61 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=32.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+
T Consensus 4 k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 45 (275)
T PRK08263 4 KVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAE 45 (275)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 345555 899999999999999999999999988765443
No 388
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=94.01 E-value=0.29 Score=42.59 Aligned_cols=40 Identities=28% Similarity=0.248 Sum_probs=33.0
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.|. |.+|+.++..|++.|++|++++++++..++..+.+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~ 45 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVA 45 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 44444 89999999999999999999999988777665543
No 389
>PRK05599 hypothetical protein; Provisional
Probab=94.01 E-value=0.29 Score=42.82 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=43.7
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAKNTIQ 98 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~ 98 (294)
+.+|.++|..|+ .|++|++.+|+++.+++..+.+... ......+.-+|+.+ ++++.+.+++.
T Consensus 10 ~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~----------------~~~~~~~~~~Dv~d~~~v~~~~~~~~ 72 (246)
T PRK05599 10 SDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQR----------------GATSVHVLSFDAQDLDTHRELVKQTQ 72 (246)
T ss_pred cHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhc----------------cCCceEEEEcccCCHHHHHHHHHHHH
Confidence 679999999998 5999999999999888766655310 00113455677777 55666665544
Q ss_pred H
Q psy13746 99 H 99 (294)
Q Consensus 99 ~ 99 (294)
+
T Consensus 73 ~ 73 (246)
T PRK05599 73 E 73 (246)
T ss_pred H
Confidence 4
No 390
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=94.00 E-value=0.35 Score=41.95 Aligned_cols=41 Identities=32% Similarity=0.368 Sum_probs=33.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|++.|++|.+++++++...+..+.+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~ 47 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADI 47 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH
Confidence 455555 79999999999999999999999998776655443
No 391
>PRK06483 dihydromonapterin reductase; Provisional
Probab=94.00 E-value=0.24 Score=42.79 Aligned_cols=28 Identities=21% Similarity=0.052 Sum_probs=25.5
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
|.+|+.+|..|++.|++|++.+++++..
T Consensus 12 ~gIG~~ia~~l~~~G~~V~~~~r~~~~~ 39 (236)
T PRK06483 12 QRIGLALAWHLLAQGQPVIVSYRTHYPA 39 (236)
T ss_pred ChHHHHHHHHHHHCCCeEEEEeCCchhH
Confidence 7899999999999999999999987653
No 392
>KOG1370|consensus
Probab=93.99 E-value=0.35 Score=43.92 Aligned_cols=87 Identities=13% Similarity=0.127 Sum_probs=62.6
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecchHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQ 89 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~ 89 (294)
-.|++|| |-+|.+-|+.|.-.|..|++.+++|-..-++
T Consensus 213 aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQA--------------------------------------- 253 (434)
T KOG1370|consen 213 AGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQA--------------------------------------- 253 (434)
T ss_pred cccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHH---------------------------------------
Confidence 3578888 9999999999999999999999998432111
Q ss_pred HHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEe
Q psy13746 90 IENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSS 169 (294)
Q Consensus 90 ~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s 169 (294)
.+ .| .. .+.++++++..|+++.+.-.. ..+..+..+.++.++|+.
T Consensus 254 ----------aM-----eG--------------~~-V~tm~ea~~e~difVTtTGc~----dii~~~H~~~mk~d~IvC- 298 (434)
T KOG1370|consen 254 ----------AM-----EG--------------YE-VTTLEEAIREVDIFVTTTGCK----DIITGEHFDQMKNDAIVC- 298 (434)
T ss_pred ----------Hh-----hc--------------cE-eeeHHHhhhcCCEEEEccCCc----chhhHHHHHhCcCCcEEe-
Confidence 01 01 22 245778899999999987663 344555556688899986
Q ss_pred cCCC
Q psy13746 170 STSS 173 (294)
Q Consensus 170 ~tSt 173 (294)
|...
T Consensus 299 N~Gh 302 (434)
T KOG1370|consen 299 NIGH 302 (434)
T ss_pred cccc
Confidence 5543
No 393
>PRK08017 oxidoreductase; Provisional
Probab=93.97 E-value=0.27 Score=42.84 Aligned_cols=37 Identities=19% Similarity=0.124 Sum_probs=31.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
++|.|. |.+|..+|..|++.|++|++.++++++++.+
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~ 42 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARM 42 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHH
Confidence 355566 8999999999999999999999999876654
No 394
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.95 E-value=0.17 Score=44.50 Aligned_cols=38 Identities=11% Similarity=-0.023 Sum_probs=32.5
Q ss_pred CCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 11 GGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 11 ~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
...++|.|+ |.+|+.++..|++.|++|+++.|+++...
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~ 55 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAK 55 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 344688888 89999999999999999999999987643
No 395
>PRK06953 short chain dehydrogenase; Provisional
Probab=93.94 E-value=0.26 Score=42.24 Aligned_cols=37 Identities=14% Similarity=0.161 Sum_probs=30.6
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~ 50 (294)
+++.|. |.+|+.+|..|++.|++|++.+++++.+++.
T Consensus 2 ~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~~~ 41 (222)
T PRK06953 2 KTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALAAL 41 (222)
T ss_pred ceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 345555 8999999999999999999999998776543
No 396
>PRK06500 short chain dehydrogenase; Provisional
Probab=93.93 E-value=0.36 Score=41.83 Aligned_cols=39 Identities=23% Similarity=0.190 Sum_probs=32.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.+++..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 48 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARA 48 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHH
Confidence 355555 899999999999999999999999877665443
No 397
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.93 E-value=0.34 Score=43.24 Aligned_cols=34 Identities=21% Similarity=0.119 Sum_probs=28.5
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
.|+++| | -+|+++|..|++.|++|.+.+++++..
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~ 46 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALG 46 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHH
Confidence 477777 3 699999999999999999999986443
No 398
>PRK05650 short chain dehydrogenase; Provisional
Probab=93.89 E-value=0.34 Score=42.88 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=33.5
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.|. |.+|+.+|..|++.|++|++.+++++.++.....+
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l 44 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLL 44 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45566 89999999999999999999999998877655543
No 399
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.89 E-value=0.33 Score=42.13 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=31.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEE-EeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~-~d~~~~~~~~~~~~i 54 (294)
+++.|. |.+|+.+|..|++.|++|++ .+++++..+++.+.+
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~ 49 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEI 49 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence 456555 89999999999999999876 578877766555544
No 400
>PRK05855 short chain dehydrogenase; Validated
Probab=93.89 E-value=0.29 Score=48.07 Aligned_cols=68 Identities=21% Similarity=0.159 Sum_probs=47.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
+++.|+ |.+|+.+|..|++.|++|++.+++++.+++..+.+.+. ...+.+..+|+.+ +.
T Consensus 316 ~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~-----------------~~~~~~~~~Dv~~~~~ 378 (582)
T PRK05855 316 KLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAA-----------------GAVAHAYRVDVSDADA 378 (582)
T ss_pred CEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----------------CCeEEEEEcCCCCHHH
Confidence 455555 89999999999999999999999998887766554310 1124556677777 55
Q ss_pred HHHHHHHHH
Q psy13746 90 IENAKNTIQ 98 (294)
Q Consensus 90 ~~~~~~~~~ 98 (294)
+++..+.+.
T Consensus 379 ~~~~~~~~~ 387 (582)
T PRK05855 379 MEAFAEWVR 387 (582)
T ss_pred HHHHHHHHH
Confidence 555555443
No 401
>PRK07576 short chain dehydrogenase; Provisional
Probab=93.88 E-value=0.38 Score=42.53 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=33.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
++|.|. |.+|+.+|..|+..|++|++.+|+++.++...+.+
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 53 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQL 53 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 355555 89999999999999999999999988776654433
No 402
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.84 E-value=0.24 Score=47.54 Aligned_cols=33 Identities=27% Similarity=0.183 Sum_probs=29.7
Q ss_pred CccceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 12 GFYPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
+-++|.|+ |.+|.++|..|++.|++|+++|+++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 34688888 8899999999999999999999986
No 403
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.81 E-value=0.27 Score=44.52 Aligned_cols=40 Identities=18% Similarity=0.222 Sum_probs=34.0
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~ 53 (294)
+++.|+ |-.|++++..|+..|. ++++++|++++.+...+.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~ 170 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADV 170 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 578888 9999999999999996 799999999887765543
No 404
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=93.80 E-value=0.26 Score=44.14 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=22.4
Q ss_pred cceEEE--ccccHHHHHHHHHC-CCeEE-EEeC
Q psy13746 14 YPDGII--GLIGQAWAMIFASA-GYKVS-LYDV 42 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~-G~~V~-~~d~ 42 (294)
.||+|| |.||+.++..+.+. +.++. ++++
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~ 34 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVP 34 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEc
Confidence 589999 99999999998875 55554 4443
No 405
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.79 E-value=0.32 Score=42.06 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=32.0
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
+++.|. |.+|+.++..|++.|++|++.+++++.+++..
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~ 50 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLA 50 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 466666 78999999999999999999999988766543
No 406
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=93.77 E-value=0.13 Score=43.43 Aligned_cols=57 Identities=23% Similarity=0.267 Sum_probs=41.0
Q ss_pred CceeEEeecchHHHHHHHHHHHHHHHHHHhccccCCCCChhhhccCeeeccChhhhccCCcEEEEcCCcc
Q psy13746 77 GYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLEDAIFIQESVPEI 146 (294)
Q Consensus 77 ~~~v~~~d~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~a~~~aDlVieavpe~ 146 (294)
+-++.++|.|.+.++.+..-.++..++. | . .-++..++|..+|+++||+||.++-..
T Consensus 28 ~~ei~L~Did~~RL~~~~~~~~~~~~~~---~-~---------~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 28 GSEIVLMDIDEERLEIVERLARRMVEEA---G-A---------DLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp EEEEEEE-SCHHHHHHHHHHHHHHHHHC---T-T---------SSEEEEESSHHHHHTTESEEEE---TT
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHHhc---C-C---------CeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 4589999999999998888777666432 1 0 124677999999999999999987654
No 407
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=93.75 E-value=0.38 Score=42.41 Aligned_cols=35 Identities=26% Similarity=0.280 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|..+|..|+..|++|++.+++++.+++..+.+
T Consensus 20 ~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~ 54 (265)
T PRK07097 20 YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAY 54 (265)
T ss_pred chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence 88999999999999999999999998887665544
No 408
>PRK07775 short chain dehydrogenase; Provisional
Probab=93.75 E-value=0.49 Score=42.05 Aligned_cols=47 Identities=28% Similarity=0.286 Sum_probs=36.0
Q ss_pred CCCCCCccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 7 FPAQGGFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 7 ~~~~~~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|+.++.-+.+.|. |.+|+.++..|++.|++|.+.+++++.++...+.
T Consensus 4 ~~~~~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~ 53 (274)
T PRK07775 4 FEPHPDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDK 53 (274)
T ss_pred CCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 4445444555555 8999999999999999999999998776655443
No 409
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=93.72 E-value=0.38 Score=41.88 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=29.8
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|..+|..|++.|++|++++++++.++...+.+
T Consensus 10 g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l 44 (254)
T TIGR02415 10 QGIGKGIAERLAKDGFAVAVADLNEETAKETAKEI 44 (254)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 89999999999999999999999987766554433
No 410
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=93.69 E-value=0.2 Score=44.93 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=25.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~ 42 (294)
++++|| ..+|++||..|+++++.|++...
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs 188 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHS 188 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcC
Confidence 578888 78999999999999999998763
No 411
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=93.68 E-value=0.17 Score=48.23 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=20.2
Q ss_pred CeeeccChhhhccCCcEEEEcCC
Q psy13746 122 LISGTPVLRECLEDAIFIQESVP 144 (294)
Q Consensus 122 ~i~~~~~~~~a~~~aDlVieavp 144 (294)
++..++|.++|+++||+||.++-
T Consensus 64 kv~~ttd~~eAl~gAdfVi~~~r 86 (442)
T COG1486 64 KVEATTDRREALEGADFVITQIR 86 (442)
T ss_pred EEEEecCHHHHhcCCCEEEEEEe
Confidence 46788999999999999999864
No 412
>PRK07035 short chain dehydrogenase; Provisional
Probab=93.67 E-value=0.47 Score=41.34 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=30.8
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|..++..|++.|++|++.+++++.++...+.+
T Consensus 18 ~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~ 52 (252)
T PRK07035 18 RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAI 52 (252)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 89999999999999999999999988877665544
No 413
>PRK07024 short chain dehydrogenase; Provisional
Probab=93.64 E-value=0.32 Score=42.72 Aligned_cols=39 Identities=23% Similarity=0.182 Sum_probs=32.4
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.+++..+
T Consensus 3 ~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 3 LKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAA 44 (257)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 345455 899999999999999999999999988766544
No 414
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.63 E-value=0.2 Score=45.57 Aligned_cols=29 Identities=10% Similarity=0.249 Sum_probs=23.9
Q ss_pred cceEEE---ccccHHHHHHHHH----CCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFAS----AGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~----~G~~V~~~d~ 42 (294)
++|+|| ..+|+++|..|.+ .|..|++...
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs 195 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHS 195 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeC
Confidence 688888 8999999999887 6778887664
No 415
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=93.63 E-value=0.069 Score=50.55 Aligned_cols=31 Identities=29% Similarity=0.490 Sum_probs=29.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.+|+|| |.+|.++|.+|++.|++|+++|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999 9999999999999999999999975
No 416
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.61 E-value=0.43 Score=41.56 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=26.0
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++.+| |.+|+.+|..|++.|++|++++++.
T Consensus 3 k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~ 36 (256)
T PRK12745 3 PVALVTGGRRGIGLGIARALAAAGFDLAINDRPD 36 (256)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCc
Confidence 45555 8999999999999999999999864
No 417
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.60 E-value=0.37 Score=42.51 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=27.9
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.|+++| | -+|+++|..|++.|++|.+.+++++.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhh
Confidence 367777 3 49999999999999999999998654
No 418
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=93.57 E-value=0.31 Score=44.25 Aligned_cols=36 Identities=17% Similarity=0.160 Sum_probs=29.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIEN 49 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~ 49 (294)
+++.|+ |-.+++++..++..|. +|++++|+++..++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~k 163 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDK 163 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHH
Confidence 578888 7779999999999886 89999999653333
No 419
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.56 E-value=0.36 Score=42.77 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=32.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++|++.+++++.++...+
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKA 44 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 345555 899999999999999999999999887765443
No 420
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=93.53 E-value=0.21 Score=44.96 Aligned_cols=37 Identities=14% Similarity=0.104 Sum_probs=31.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~ 50 (294)
+++.|+ |-.+++++..|++.|. +|++++|++++.+..
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~l 162 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKAL 162 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH
Confidence 468888 8899999999999997 699999999876554
No 421
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.47 E-value=0.26 Score=44.87 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=23.8
Q ss_pred cceEEE---ccccHHHHHHHHHC----CCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASA----GYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~----G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.+. |..|+++.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~h 196 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVH 196 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEec
Confidence 688899 89999999999988 67888753
No 422
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.46 E-value=0.2 Score=45.30 Aligned_cols=29 Identities=14% Similarity=0.363 Sum_probs=24.7
Q ss_pred cceEEE---ccccHHHHHHHHH----CCCeEEEEeC
Q psy13746 14 YPDGII---GLIGQAWAMIFAS----AGYKVSLYDV 42 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~----~G~~V~~~d~ 42 (294)
++|+|| ..+|+++|..|.+ .|..|+++..
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs 193 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHS 193 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeC
Confidence 688888 8999999999998 6788887773
No 423
>PRK08303 short chain dehydrogenase; Provisional
Probab=93.45 E-value=0.46 Score=43.31 Aligned_cols=30 Identities=17% Similarity=0.160 Sum_probs=26.4
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| +-+|.++|..|++.|++|++.+|+.
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~ 42 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRST 42 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence 56666 5799999999999999999999984
No 424
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=93.45 E-value=0.22 Score=45.65 Aligned_cols=42 Identities=29% Similarity=0.297 Sum_probs=30.2
Q ss_pred CCccceEEE--c-cccHHHHHHHHHCC---CeEEEEeCChHHHHHHHH
Q psy13746 11 GGFYPDGII--G-LIGQAWAMIFASAG---YKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 11 ~~~~~i~ii--G-~mG~~iA~~~~~~G---~~V~~~d~~~~~~~~~~~ 52 (294)
|+..||+|| | .++...+..+...+ .-|.++|+++++++...+
T Consensus 1 ~~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~ 48 (342)
T COG0673 1 MKMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAE 48 (342)
T ss_pred CCeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHH
Confidence 345799999 5 44456777777765 357788999999776544
No 425
>PRK06181 short chain dehydrogenase; Provisional
Probab=93.44 E-value=0.44 Score=41.79 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=32.8
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
+|.|. |.+|..++..|++.|++|++.+++++..+...+.+
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l 45 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQEL 45 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence 45555 88999999999999999999999988776655443
No 426
>KOG1200|consensus
Probab=93.40 E-value=0.21 Score=42.62 Aligned_cols=43 Identities=26% Similarity=0.251 Sum_probs=35.1
Q ss_pred CCCccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 10 QGGFYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 10 ~~~~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
++-..+++++ --+|++|++.|+++|++|.+.|++.+..+....
T Consensus 10 ~r~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~ 56 (256)
T KOG1200|consen 10 QRLMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAG 56 (256)
T ss_pred HHHhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHh
Confidence 4555788888 358999999999999999999999887665443
No 427
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=93.39 E-value=0.48 Score=40.88 Aligned_cols=38 Identities=24% Similarity=0.248 Sum_probs=31.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
+++.|. |.+|+.++..|++.|+.|.+.+++++.++...
T Consensus 7 ~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~ 47 (245)
T PRK12936 7 RKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALA 47 (245)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 455555 89999999999999999999999988776543
No 428
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=93.36 E-value=0.49 Score=41.46 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=26.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
|.+|..+|..|++.|++|.+++++ +..+++.+
T Consensus 25 ~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~ 56 (258)
T PRK06935 25 TGLGQGYAVALAKAGADIIITTHG-TNWDETRR 56 (258)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHH
Confidence 899999999999999999999998 44444443
No 429
>PRK06841 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.63 Score=40.56 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=28.2
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|.|. |.+|..+|..|++.|++|++.+|+++.
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~ 51 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDV 51 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 345455 899999999999999999999999864
No 430
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.35 E-value=0.4 Score=42.38 Aligned_cols=31 Identities=23% Similarity=0.162 Sum_probs=26.2
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.|+++| | -+|+++|..|++.|++|++.++++
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~ 44 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSE 44 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCch
Confidence 367777 3 489999999999999999999884
No 431
>PRK06484 short chain dehydrogenase; Validated
Probab=93.34 E-value=0.35 Score=47.20 Aligned_cols=40 Identities=28% Similarity=0.179 Sum_probs=33.6
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
.|+++| |-+|+.+|..|++.|++|++.+++++.+++..+.
T Consensus 269 ~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~ 312 (520)
T PRK06484 269 PRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEA 312 (520)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 356666 8899999999999999999999999887766543
No 432
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.30 E-value=1.2 Score=38.87 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=26.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
++|.|| |.++..=+..|+..|.+|+++...
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 478899 899988888999999999999654
No 433
>PRK08219 short chain dehydrogenase; Provisional
Probab=93.28 E-value=0.34 Score=41.27 Aligned_cols=38 Identities=21% Similarity=0.054 Sum_probs=31.2
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~ 51 (294)
++++.|. |.+|+.++..|++. ++|++.+|+++..+...
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~ 43 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELA 43 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHH
Confidence 3566666 89999999999999 99999999987765443
No 434
>PRK05875 short chain dehydrogenase; Provisional
Probab=93.20 E-value=0.61 Score=41.29 Aligned_cols=42 Identities=17% Similarity=0.078 Sum_probs=33.9
Q ss_pred CccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 12 GFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 12 ~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
.-++|.|. |.+|+.+|..|++.|++|++++++++..+...+.
T Consensus 6 ~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 50 (276)
T PRK05875 6 QDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEE 50 (276)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Confidence 33566555 8999999999999999999999998877655443
No 435
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=93.19 E-value=0.22 Score=46.98 Aligned_cols=34 Identities=9% Similarity=0.148 Sum_probs=28.3
Q ss_pred ccceEEE---ccccHHHHHHHHHC-CCeEEEEeCChHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASA-GYKVSLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~-G~~V~~~d~~~~~ 46 (294)
.+||+|+ |..|+.+...|... +++|+.+..+.+.
T Consensus 38 ~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~sa 75 (381)
T PLN02968 38 KKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKA 75 (381)
T ss_pred ccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhc
Confidence 3589999 99999999999987 6799988775443
No 436
>PRK09134 short chain dehydrogenase; Provisional
Probab=93.18 E-value=0.63 Score=40.78 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=29.4
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~~ 53 (294)
.++.+| |.+|+.+|..|++.|++|.+.++ +.+..+.....
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~ 53 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAE 53 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH
Confidence 444555 89999999999999999988776 44555444433
No 437
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.14 E-value=0.31 Score=44.22 Aligned_cols=39 Identities=10% Similarity=0.057 Sum_probs=27.4
Q ss_pred cChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 127 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 127 ~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
.++.+.++.||+||.|+.-.--++. +++++++++++...
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~i~~-------~~vk~gavVIDvGi 234 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEFVKA-------DMVKEGAVVIDVGT 234 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCccCH-------HHcCCCCEEEEecC
Confidence 4566678999999999875433333 34788999887654
No 438
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.11 E-value=0.47 Score=42.15 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=26.1
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
.|+++| | -+|+++|..|++.|++|.+.+++.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~ 42 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 42 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecch
Confidence 366667 3 599999999999999999999884
No 439
>PRK08628 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.52 Score=41.22 Aligned_cols=33 Identities=15% Similarity=0.078 Sum_probs=28.6
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQI 47 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~ 47 (294)
++.|. |.+|+.+|..|++.|++|.+.+++++..
T Consensus 9 ~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~ 44 (258)
T PRK08628 9 VVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD 44 (258)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH
Confidence 44444 7899999999999999999999998776
No 440
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=93.04 E-value=4.2 Score=37.81 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=32.1
Q ss_pred CccceEEE--ccccHHHHHHHHH-CCCeE-EEEeCChHHHHHHHH
Q psy13746 12 GFYPDGII--GLIGQAWAMIFAS-AGYKV-SLYDVLSEQIENAKN 52 (294)
Q Consensus 12 ~~~~i~ii--G~mG~~iA~~~~~-~G~~V-~~~d~~~~~~~~~~~ 52 (294)
+.-||++| |.||+.|..+.++ .|.+| .+-|++.....++.+
T Consensus 16 ~PiRVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~ 60 (438)
T COG4091 16 KPIRVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYD 60 (438)
T ss_pred CceEEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHH
Confidence 34589999 9999999999887 79875 477888777666544
No 441
>PRK06125 short chain dehydrogenase; Provisional
Probab=93.00 E-value=0.61 Score=40.89 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=31.1
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
|.+|+.+|..|++.|++|++.+++++.++...+.+.
T Consensus 17 ~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~ 52 (259)
T PRK06125 17 KGIGAAAAEAFAAEGCHLHLVARDADALEALAADLR 52 (259)
T ss_pred chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence 689999999999999999999999988776655443
No 442
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=92.98 E-value=0.26 Score=46.33 Aligned_cols=33 Identities=27% Similarity=0.203 Sum_probs=28.9
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~ 46 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.=.
T Consensus 42 ~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve 77 (370)
T PRK05600 42 ARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVD 77 (370)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEc
Confidence 478888 9999999999999996 99999988533
No 443
>PLN02780 ketoreductase/ oxidoreductase
Probab=92.87 E-value=0.21 Score=45.93 Aligned_cols=42 Identities=19% Similarity=0.340 Sum_probs=35.9
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
.++++| |.+|+++|..|++.|++|.+++|+++.+++..+.+.
T Consensus 53 g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~ 98 (320)
T PLN02780 53 GSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQ 98 (320)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHH
Confidence 456666 789999999999999999999999999887766554
No 444
>PRK08223 hypothetical protein; Validated
Probab=92.86 E-value=0.22 Score=45.06 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=29.8
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~ 48 (294)
.+|.|+ |-+|+.+|..|+.+|. +++++|-|.=...
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~S 65 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELR 65 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchh
Confidence 579999 9999999999999997 8999998754433
No 445
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.85 E-value=0.46 Score=42.39 Aligned_cols=30 Identities=23% Similarity=0.226 Sum_probs=25.5
Q ss_pred ceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| | -+|.++|..|++.|++|++.++++
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~ 46 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGD 46 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCch
Confidence 56666 4 399999999999999999988874
No 446
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.84 E-value=0.23 Score=46.74 Aligned_cols=31 Identities=26% Similarity=0.265 Sum_probs=28.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~ 169 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV 169 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 578888 9999999999999998 899999884
No 447
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.76 E-value=0.34 Score=44.06 Aligned_cols=28 Identities=11% Similarity=0.233 Sum_probs=23.5
Q ss_pred cceEEE---ccccHHHHHHHHHC----CCeEEEEe
Q psy13746 14 YPDGII---GLIGQAWAMIFASA----GYKVSLYD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~----G~~V~~~d 41 (294)
++|+|| ..+|+++|..|.++ +..|+++.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvch 192 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCH 192 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeC
Confidence 688888 89999999999887 67888764
No 448
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=92.74 E-value=0.37 Score=43.07 Aligned_cols=32 Identities=13% Similarity=0.007 Sum_probs=28.8
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+|.|+ |.+|+.++..|++.|++|++..|+++.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~ 35 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSS 35 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 46677 999999999999999999999999865
No 449
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.74 E-value=0.69 Score=40.87 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=25.7
Q ss_pred ceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| | -+|+++|..|++.|++|++.+++.
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~ 42 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTYVVD 42 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcH
Confidence 66777 6 599999999999999999987764
No 450
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.73 E-value=0.49 Score=41.73 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=25.3
Q ss_pred ceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| | -+|+++|..|++.|++|++.+++.
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~ 43 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGE 43 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcc
Confidence 56666 4 599999999999999999998753
No 451
>PRK07904 short chain dehydrogenase; Provisional
Probab=92.71 E-value=0.58 Score=41.15 Aligned_cols=41 Identities=15% Similarity=0.109 Sum_probs=32.2
Q ss_pred cceEEE---ccccHHHHHHHHHCC-CeEEEEeCChHH-HHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAG-YKVSLYDVLSEQ-IENAKNTI 54 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G-~~V~~~d~~~~~-~~~~~~~i 54 (294)
++|.|. |.+|+.+|..+++.| ++|++++|+++. ++.+.+.+
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l 54 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQM 54 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHH
Confidence 445455 789999999999985 999999999886 66655544
No 452
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.71 E-value=1.6 Score=41.79 Aligned_cols=33 Identities=18% Similarity=0.069 Sum_probs=28.7
Q ss_pred cceEEE--ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
++|.|+ |.+|.++|..|++.|++|+++|+++..
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~ 40 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS 40 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc
Confidence 567777 789999999999999999999987643
No 453
>PRK08226 short chain dehydrogenase; Provisional
Probab=92.70 E-value=0.73 Score=40.39 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=27.9
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
+++.|. |.+|+.+|..|++.|++|++.+++++.
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~ 42 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEI 42 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH
Confidence 445455 899999999999999999999998753
No 454
>PRK12746 short chain dehydrogenase; Provisional
Probab=92.70 E-value=0.81 Score=39.84 Aligned_cols=40 Identities=20% Similarity=0.136 Sum_probs=30.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEE-eCChHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLY-DVLSEQIENAKNT 53 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~-d~~~~~~~~~~~~ 53 (294)
++|.|. |.+|+.+|..|++.|++|.+. .++.+..+...+.
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~ 50 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIRE 50 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 456555 899999999999999999875 6877666554433
No 455
>KOG1502|consensus
Probab=92.61 E-value=1.3 Score=40.87 Aligned_cols=35 Identities=23% Similarity=0.180 Sum_probs=30.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~ 48 (294)
++|-|- |.+|+-|...|+.+||.|...-|+++..+
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k 44 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEK 44 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhh
Confidence 456555 99999999999999999999999999844
No 456
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=92.57 E-value=0.48 Score=42.87 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=35.5
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~~~~~~i 54 (294)
+++.|+ |-.+++++..|+..|. ++++++|+.++.+++.+..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~ 170 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLF 170 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHh
Confidence 678888 9999999999999995 8999999999988766543
No 457
>PRK06198 short chain dehydrogenase; Provisional
Probab=92.56 E-value=0.78 Score=40.08 Aligned_cols=39 Identities=21% Similarity=0.118 Sum_probs=31.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCe-EEEEeCChHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYK-VSLYDVLSEQIENAKN 52 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~-V~~~d~~~~~~~~~~~ 52 (294)
++|.|. |.+|+.+|..|++.|++ |++++++++......+
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~ 49 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAA 49 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence 456555 78999999999999999 9999999877664433
No 458
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.55 E-value=0.46 Score=42.00 Aligned_cols=29 Identities=21% Similarity=0.128 Sum_probs=24.5
Q ss_pred ceEEE-c-----cccHHHHHHHHHCCCeEEEEeCC
Q psy13746 15 PDGII-G-----LIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 15 ~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
|+++| | -+|.++|..|++.|++|++.++.
T Consensus 7 k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~ 41 (260)
T PRK06997 7 KRILITGLLSNRSIAYGIAKACKREGAELAFTYVG 41 (260)
T ss_pred cEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccc
Confidence 56667 6 58999999999999999998654
No 459
>PRK09135 pteridine reductase; Provisional
Probab=92.54 E-value=0.8 Score=39.52 Aligned_cols=31 Identities=32% Similarity=0.268 Sum_probs=26.8
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++|.|. |.+|+.++..|++.|++|++.+++.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~ 40 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAAGYRVAIHYHRS 40 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence 455555 8999999999999999999999864
No 460
>PRK06484 short chain dehydrogenase; Validated
Probab=92.53 E-value=0.56 Score=45.79 Aligned_cols=39 Identities=28% Similarity=0.300 Sum_probs=32.8
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNT 53 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~ 53 (294)
|+++| +.+|.++|..|++.|++|++++++++.+++..+.
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~ 48 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADS 48 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence 55566 7799999999999999999999999887765543
No 461
>PRK07069 short chain dehydrogenase; Validated
Probab=92.50 E-value=0.86 Score=39.48 Aligned_cols=39 Identities=31% Similarity=0.302 Sum_probs=31.1
Q ss_pred eEEE---ccccHHHHHHHHHCCCeEEEEeCC-hHHHHHHHHHH
Q psy13746 16 DGII---GLIGQAWAMIFASAGYKVSLYDVL-SEQIENAKNTI 54 (294)
Q Consensus 16 i~ii---G~mG~~iA~~~~~~G~~V~~~d~~-~~~~~~~~~~i 54 (294)
|.|. |.+|+.+|..|++.|++|++.+++ ++.++...+.+
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~ 44 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEI 44 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH
Confidence 4455 889999999999999999999998 66666554443
No 462
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=92.46 E-value=0.75 Score=40.43 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=26.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEe-CChHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNT 53 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d-~~~~~~~~~~~~ 53 (294)
+.+|+.+|..|++.|++|++.. ++++.++...+.
T Consensus 18 ~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~ 52 (260)
T PRK08416 18 RGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAED 52 (260)
T ss_pred chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 8899999999999999998875 466666554443
No 463
>PRK12743 oxidoreductase; Provisional
Probab=92.43 E-value=0.84 Score=39.99 Aligned_cols=35 Identities=20% Similarity=0.349 Sum_probs=27.2
Q ss_pred ccccHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d-~~~~~~~~~~~~i 54 (294)
|.+|..+|..|++.|++|.+.+ ++.+..+...+.+
T Consensus 12 ~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~ 47 (256)
T PRK12743 12 SGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEV 47 (256)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHH
Confidence 7899999999999999998875 4555555554443
No 464
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=92.42 E-value=0.43 Score=36.16 Aligned_cols=32 Identities=19% Similarity=0.095 Sum_probs=28.5
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
-++|.|| |.+|..=+..|++.|.+|+++..+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 3688888 9999999999999999999999986
No 465
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=92.42 E-value=0.85 Score=39.90 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=24.3
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
|.+|+.+|..|++.|++|+++++++.
T Consensus 18 ~gIG~~la~~l~~~G~~v~~~~r~~~ 43 (260)
T PRK12823 18 QGIGRGVALRAAAEGARVVLVDRSEL 43 (260)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCchH
Confidence 89999999999999999999999863
No 466
>KOG0725|consensus
Probab=92.38 E-value=1.2 Score=39.92 Aligned_cols=43 Identities=26% Similarity=0.329 Sum_probs=37.4
Q ss_pred ccceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 13 FYPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 13 ~~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
..||++| --+|+++|..|++.|.+|++.+|+++.++.....+.
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~ 53 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELG 53 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 3689999 568999999999999999999999999888776554
No 467
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=92.33 E-value=0.79 Score=39.97 Aligned_cols=31 Identities=29% Similarity=0.244 Sum_probs=28.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 579999 9999999999999997 899999775
No 468
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.33 E-value=0.48 Score=41.89 Aligned_cols=34 Identities=24% Similarity=0.259 Sum_probs=29.1
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~ 47 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.=..
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 69 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSL 69 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECc
Confidence 478899 9999999999999997 899999875443
No 469
>PRK07877 hypothetical protein; Provisional
Probab=92.26 E-value=0.36 Score=49.30 Aligned_cols=32 Identities=25% Similarity=0.401 Sum_probs=27.4
Q ss_pred cceEEE--ccccHHHHHHHHHCCC--eEEEEeCChHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY--KVSLYDVLSEQ 46 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~--~V~~~d~~~~~ 46 (294)
.+|+|+ | +|+.+|..|+.+|. +++++|.|.=.
T Consensus 108 ~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve 143 (722)
T PRK07877 108 LRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLE 143 (722)
T ss_pred CCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEc
Confidence 479999 9 89999999999994 89999987533
No 470
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=92.25 E-value=0.84 Score=40.03 Aligned_cols=64 Identities=16% Similarity=0.099 Sum_probs=43.6
Q ss_pred ccccHHHHHHHHH----CCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HHHHHHH
Q psy13746 20 GLIGQAWAMIFAS----AGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQIENAK 94 (294)
Q Consensus 20 G~mG~~iA~~~~~----~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~ 94 (294)
+.+|..+|..|++ .|++|++.+|+++.++...+.+... .....+.++.+|+.+ +.++...
T Consensus 10 ~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~---------------~~~~~v~~~~~Dl~~~~~v~~~~ 74 (256)
T TIGR01500 10 RGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAE---------------RSGLRVVRVSLDLGAEAGLEQLL 74 (256)
T ss_pred CchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhc---------------CCCceEEEEEeccCCHHHHHHHH
Confidence 7899999999997 7999999999999888776655310 001234555667776 4455555
Q ss_pred HHHH
Q psy13746 95 NTIQ 98 (294)
Q Consensus 95 ~~~~ 98 (294)
+.+.
T Consensus 75 ~~~~ 78 (256)
T TIGR01500 75 KALR 78 (256)
T ss_pred HHHH
Confidence 4443
No 471
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=92.25 E-value=0.6 Score=41.15 Aligned_cols=30 Identities=20% Similarity=0.119 Sum_probs=25.8
Q ss_pred ceEEE-c-----cccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII-G-----LIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| | -+|..+|..|++.|++|++.+++.
T Consensus 8 k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~ 43 (256)
T PRK07889 8 KRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGR 43 (256)
T ss_pred CEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCcc
Confidence 56666 5 699999999999999999999874
No 472
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.24 E-value=2.3 Score=41.02 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=29.8
Q ss_pred ccceEEE--ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 13 FYPDGII--GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
.++|+|+ |.-|.++|..|++.|++|+++|.++.
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~ 48 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSE 48 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 3689999 99999999999999999999998764
No 473
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=92.22 E-value=1 Score=36.34 Aligned_cols=35 Identities=29% Similarity=0.223 Sum_probs=27.4
Q ss_pred ccccHHHHHHHHHCC-CeEEEEeCC--hHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAG-YKVSLYDVL--SEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G-~~V~~~d~~--~~~~~~~~~~i 54 (294)
+.+|+.+|.+|++.| ..|.++.++ .+..+.....+
T Consensus 10 ~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l 47 (167)
T PF00106_consen 10 SGIGRALARALARRGARVVILTSRSEDSEGAQELIQEL 47 (167)
T ss_dssp SHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCceEEEEeeecccccccccccccc
Confidence 899999999999994 588999999 55555554433
No 474
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=92.12 E-value=0.53 Score=41.50 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=26.2
Q ss_pred cceEEE-c-----cccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII-G-----LIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii-G-----~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
.|+++| | -+|+.+|..|++.|++|.+.+++.+
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~ 43 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDE 43 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcc
Confidence 366777 5 5999999999999999998876543
No 475
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.10 E-value=0.74 Score=46.32 Aligned_cols=35 Identities=31% Similarity=0.273 Sum_probs=30.9
Q ss_pred ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i 54 (294)
|.+|+.+|..|++.|++|++.+++++.+++..+.+
T Consensus 381 ~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~ 415 (657)
T PRK07201 381 SGIGRATAIKVAEAGATVFLVARNGEALDELVAEI 415 (657)
T ss_pred CHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence 78999999999999999999999998877765544
No 476
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=92.10 E-value=0.47 Score=41.84 Aligned_cols=34 Identities=26% Similarity=0.289 Sum_probs=29.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHH
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQI 47 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~ 47 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.=..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 478888 9999999999999996 899999876443
No 477
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.03 E-value=1.1 Score=38.76 Aligned_cols=42 Identities=29% Similarity=0.250 Sum_probs=34.7
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~ 55 (294)
+++.|. |.+|..+|..+++.|++|++.++++++++...+.+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~ 50 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECG 50 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence 355555 899999999999999999999999988776665543
No 478
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.99 E-value=0.98 Score=38.79 Aligned_cols=34 Identities=24% Similarity=0.052 Sum_probs=27.6
Q ss_pred CccceEEE---ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 12 GFYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 12 ~~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
..++|.|+ |.+|+.++..|++.|++|++..++..
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~ 41 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE 41 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH
Confidence 34577777 99999999999999999888665544
No 479
>PLN02214 cinnamoyl-CoA reductase
Probab=91.97 E-value=1.8 Score=39.94 Aligned_cols=34 Identities=18% Similarity=0.073 Sum_probs=29.6
Q ss_pred ccceEEE---ccccHHHHHHHHHCCCeEEEEeCChHH
Q psy13746 13 FYPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~ 46 (294)
.++|.|. |.+|+.++..|++.|++|++.+|+.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~ 46 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD 46 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence 3567777 899999999999999999999998764
No 480
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=91.96 E-value=1.4 Score=40.26 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=26.1
Q ss_pred ccceEEE--ccccHHHHHHHHH-CCCeE-EEEeCChHH
Q psy13746 13 FYPDGII--GLIGQAWAMIFAS-AGYKV-SLYDVLSEQ 46 (294)
Q Consensus 13 ~~~i~ii--G~mG~~iA~~~~~-~G~~V-~~~d~~~~~ 46 (294)
-.||+|| |.+|+..+..+.+ .+.++ .++|++++.
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es 41 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPES 41 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhh
Confidence 3589999 9999997777775 45564 489999875
No 481
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=91.94 E-value=0.75 Score=39.61 Aligned_cols=65 Identities=20% Similarity=0.149 Sum_probs=47.3
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-HH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-EQ 89 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~ 89 (294)
..|.|- --+|..+|..|...|.+|++.-|+++++++++.... +.-..++|+.| +.
T Consensus 6 nTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p---------------------~~~t~v~Dv~d~~~ 64 (245)
T COG3967 6 NTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENP---------------------EIHTEVCDVADRDS 64 (245)
T ss_pred cEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCc---------------------chheeeecccchhh
Confidence 345444 357889999999999999999999999998876432 34456788888 55
Q ss_pred HHHHHHHHHH
Q psy13746 90 IENAKNTIQH 99 (294)
Q Consensus 90 ~~~~~~~~~~ 99 (294)
+++..+.+.+
T Consensus 65 ~~~lvewLkk 74 (245)
T COG3967 65 RRELVEWLKK 74 (245)
T ss_pred HHHHHHHHHh
Confidence 6555555443
No 482
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=91.92 E-value=0.19 Score=44.00 Aligned_cols=37 Identities=24% Similarity=0.236 Sum_probs=33.1
Q ss_pred CCCCCccceEEE-----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 8 PAQGGFYPDGII-----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 8 ~~~~~~~~i~ii-----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|++..+.+|-+| |.||+.+|..|++.|++|+++++..
T Consensus 9 ~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~ 50 (229)
T PRK06732 9 GTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKT 50 (229)
T ss_pred CcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECcc
Confidence 667788889888 9999999999999999999998764
No 483
>KOG1205|consensus
Probab=91.89 E-value=0.63 Score=42.03 Aligned_cols=73 Identities=22% Similarity=0.165 Sum_probs=53.2
Q ss_pred cceEEE----ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhhhhhhhhcccccCCCCCccCCceeEEeecch-H
Q psy13746 14 YPDGII----GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLS-E 88 (294)
Q Consensus 14 ~~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~ 88 (294)
.||++| .-+|.++|..++++|.++.+..+..+++++..+.++..+ ++. -+-++-+|+++ +
T Consensus 12 ~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~-----------~~~----~v~~~~~Dvs~~~ 76 (282)
T KOG1205|consen 12 GKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLG-----------SLE----KVLVLQLDVSDEE 76 (282)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhC-----------CcC----ccEEEeCccCCHH
Confidence 588888 568999999999999999999999999998866554211 111 46677788888 5
Q ss_pred HHHHHHHHHHHHH
Q psy13746 89 QIENAKNTIQHTL 101 (294)
Q Consensus 89 ~~~~~~~~~~~~l 101 (294)
+...+.+.+.++|
T Consensus 77 ~~~~~~~~~~~~f 89 (282)
T KOG1205|consen 77 SVKKFVEWAIRHF 89 (282)
T ss_pred HHHHHHHHHHHhc
Confidence 5555555544444
No 484
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=91.88 E-value=0.86 Score=39.91 Aligned_cols=30 Identities=30% Similarity=0.251 Sum_probs=26.2
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
|+++| |.+|+.+|..|++.|++|++++++.
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~ 42 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE 42 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence 55566 8999999999999999999999864
No 485
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.87 E-value=1 Score=34.95 Aligned_cols=31 Identities=29% Similarity=0.264 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 22 mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+|...++.+...|.+|++.|+++++++.+++
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 4666666677789999999999999887654
No 486
>PRK14982 acyl-ACP reductase; Provisional
Probab=91.86 E-value=0.4 Score=44.50 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=30.5
Q ss_pred cceEEE---ccccHHHHHHHHHC-C-CeEEEEeCChHHHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-G-YKVSLYDVLSEQIENA 50 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-G-~~V~~~d~~~~~~~~~ 50 (294)
++|.|+ |.||+.+|++|+.. | .++++++|+++++...
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~L 197 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQEL 197 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHH
Confidence 578888 89999999999864 5 5999999998776554
No 487
>PRK08278 short chain dehydrogenase; Provisional
Probab=91.81 E-value=1 Score=40.01 Aligned_cols=32 Identities=25% Similarity=0.087 Sum_probs=27.1
Q ss_pred cceEEE---ccccHHHHHHHHHCCCeEEEEeCChH
Q psy13746 14 YPDGII---GLIGQAWAMIFASAGYKVSLYDVLSE 45 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~ 45 (294)
+++.|. |.+|+.+|..|++.|++|++.+++.+
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~ 41 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAE 41 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccc
Confidence 344444 89999999999999999999999865
No 488
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=91.81 E-value=0.62 Score=43.32 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=22.8
Q ss_pred cceEEE---ccccHHHHHHHHHC-CCeEEE-Ee
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-GYKVSL-YD 41 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-G~~V~~-~d 41 (294)
.||+|+ |.+|+.++..+... ++++.. .+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~ 35 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS 35 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence 699999 89999999999875 677654 55
No 489
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=91.80 E-value=0.86 Score=39.32 Aligned_cols=34 Identities=29% Similarity=0.432 Sum_probs=27.6
Q ss_pred ccccHHHHHHHHHCCCeEEE-EeCChHHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSL-YDVLSEQIENAKNT 53 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~-~d~~~~~~~~~~~~ 53 (294)
|.+|+.++..|++.|++|++ +.++++..++....
T Consensus 11 g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~ 45 (247)
T PRK09730 11 RGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNL 45 (247)
T ss_pred chHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHH
Confidence 79999999999999999986 57887766655443
No 490
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=91.78 E-value=1.3 Score=39.04 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=28.6
Q ss_pred ceEEE--ccccHHHHHHHHHCCC-eEEEEeCChHHHH
Q psy13746 15 PDGII--GLIGQAWAMIFASAGY-KVSLYDVLSEQIE 48 (294)
Q Consensus 15 ~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~~~~~ 48 (294)
||.|+ |.+|..++..|+..|. +++++|.|.=...
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~s 37 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVS 37 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcch
Confidence 57788 9999999999999997 8999998754433
No 491
>PRK07791 short chain dehydrogenase; Provisional
Probab=91.70 E-value=0.87 Score=40.86 Aligned_cols=30 Identities=37% Similarity=0.480 Sum_probs=26.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEeCCh
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYDVLS 44 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d~~~ 44 (294)
++.+| +-+|+.+|..|++.|++|++.+++.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~ 40 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGV 40 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCc
Confidence 55566 7899999999999999999999876
No 492
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=91.68 E-value=1 Score=34.27 Aligned_cols=49 Identities=12% Similarity=0.140 Sum_probs=32.7
Q ss_pred eeeccChhhhccCCcEEEEcCCcchHHHHHHHHHHhcccCCCeEEEecCC
Q psy13746 123 ISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTS 172 (294)
Q Consensus 123 i~~~~~~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~s~tS 172 (294)
+...+++.++++++|.||.+++=+ +.+.--+.++...+....+|++...
T Consensus 54 ~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~~~~~~~~~~~~~iiD~~~ 102 (106)
T PF03720_consen 54 VEVCDDLEEALKGADAVVLATDHD-EFRELDWEEIAKLMRKPPVIIDGRN 102 (106)
T ss_dssp EEEESSHHHHHTTESEEEESS--G-GGGCCGHHHHHHHSCSSEEEEESSS
T ss_pred eEEecCHHHHhcCCCEEEEEecCH-HHhccCHHHHHHhcCCCCEEEECcc
Confidence 466778888999999999998643 2333234556666667777776543
No 493
>PLN02427 UDP-apiose/xylose synthase
Probab=91.67 E-value=0.49 Score=44.41 Aligned_cols=35 Identities=26% Similarity=0.342 Sum_probs=29.9
Q ss_pred cceEEE---ccccHHHHHHHHHC-CCeEEEEeCChHHHH
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-GYKVSLYDVLSEQIE 48 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-G~~V~~~d~~~~~~~ 48 (294)
++|.|. |.+|+.++..|++. |++|+++|++.+...
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~ 53 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIK 53 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhh
Confidence 578888 99999999999998 599999999876543
No 494
>PRK09291 short chain dehydrogenase; Provisional
Probab=91.64 E-value=0.92 Score=39.50 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=31.7
Q ss_pred ceEEE---ccccHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Q psy13746 15 PDGII---GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52 (294)
Q Consensus 15 ~i~ii---G~mG~~iA~~~~~~G~~V~~~d~~~~~~~~~~~ 52 (294)
+|.|. |.+|+.++..|++.|++|++.+++++..+...+
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRA 44 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45555 899999999999999999999999877665544
No 495
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=91.63 E-value=1.2 Score=35.55 Aligned_cols=77 Identities=17% Similarity=0.303 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHHHcCCeeEEEcccccc------cHHHHHHHHHHHHHHHHHHcCCCCHHHH------------HHHHHc
Q psy13746 213 SERVITRTREIMTEIGMKPVTLTTEIRG------FALNRIQFAVLNECYHLVHDGVLSAKDI------------DRVMSE 274 (294)
Q Consensus 213 ~~e~~~~~~~ll~~lG~~~v~v~~~~~g------~v~nri~~a~~~Ea~~l~~~~~~~~~~i------------d~a~~~ 274 (294)
+++..+.++.+++.+|.+++.+..+... -++++....++..+..++++.+++.++. +.+...
T Consensus 9 d~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PLi~~t~~n~~~~ 88 (132)
T PF10728_consen 9 DEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPLIRETLENILQL 88 (132)
T ss_dssp SHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhc
Confidence 8899999999999999999999543322 2567788888899999999999998552 223332
Q ss_pred ccCCCcCCCChhhhhcc
Q psy13746 275 GLGLRYAFLGPLETIHL 291 (294)
Q Consensus 275 g~g~~~~~~Gp~~~~D~ 291 (294)
| -.-+..||....|.
T Consensus 89 g--~~~alTGP~~RgD~ 103 (132)
T PF10728_consen 89 G--PADALTGPAARGDI 103 (132)
T ss_dssp ---HHHH--SCCHCTHH
T ss_pred C--chhccCCCcccCCH
Confidence 2 11235799888774
No 496
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.62 E-value=0.34 Score=45.35 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=28.2
Q ss_pred cceEEE--ccccHHHHHHHHHCCC-eEEEEeCCh
Q psy13746 14 YPDGII--GLIGQAWAMIFASAGY-KVSLYDVLS 44 (294)
Q Consensus 14 ~~i~ii--G~mG~~iA~~~~~~G~-~V~~~d~~~ 44 (294)
.+|.|+ |.+|+.+|..|+..|. +++++|.+.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ 62 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT 62 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 478888 9999999999999997 899999885
No 497
>PRK12747 short chain dehydrogenase; Provisional
Probab=91.59 E-value=1.6 Score=38.04 Aligned_cols=40 Identities=25% Similarity=0.206 Sum_probs=30.3
Q ss_pred ceEEE----ccccHHHHHHHHHCCCeEEEEe-CChHHHHHHHHHH
Q psy13746 15 PDGII----GLIGQAWAMIFASAGYKVSLYD-VLSEQIENAKNTI 54 (294)
Q Consensus 15 ~i~ii----G~mG~~iA~~~~~~G~~V~~~d-~~~~~~~~~~~~i 54 (294)
|+++| |.+|+.+|..|++.|++|.+.+ ++++.++.....+
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~ 49 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI 49 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence 45555 8999999999999999999875 5666665544433
No 498
>PRK06123 short chain dehydrogenase; Provisional
Probab=91.57 E-value=1.3 Score=38.25 Aligned_cols=33 Identities=30% Similarity=0.321 Sum_probs=25.4
Q ss_pred ccccHHHHHHHHHCCCeEEEEeC-ChHHHHHHHH
Q psy13746 20 GLIGQAWAMIFASAGYKVSLYDV-LSEQIENAKN 52 (294)
Q Consensus 20 G~mG~~iA~~~~~~G~~V~~~d~-~~~~~~~~~~ 52 (294)
|.+|+.+|..|++.|+.|.+.++ +++..+...+
T Consensus 12 ~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~ 45 (248)
T PRK06123 12 RGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQ 45 (248)
T ss_pred chHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHH
Confidence 78999999999999999988774 4555444433
No 499
>PRK10637 cysG siroheme synthase; Provisional
Probab=91.56 E-value=2.4 Score=41.03 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=29.6
Q ss_pred CCC--CCCccceEEE--ccccHHHHHHHHHCCCeEEEEeCC
Q psy13746 7 FPA--QGGFYPDGII--GLIGQAWAMIFASAGYKVSLYDVL 43 (294)
Q Consensus 7 ~~~--~~~~~~i~ii--G~mG~~iA~~~~~~G~~V~~~d~~ 43 (294)
||- +.+-++|.|| |.++..=+..|+++|.+|+++...
T Consensus 4 ~P~~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~ 44 (457)
T PRK10637 4 LPIFCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALA 44 (457)
T ss_pred eceEEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 454 3445789999 889988889999999999998543
No 500
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=91.55 E-value=0.83 Score=42.56 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=24.6
Q ss_pred cceEEE---ccccHHHHHHHHHC-CCeEE-EEeCCh
Q psy13746 14 YPDGII---GLIGQAWAMIFASA-GYKVS-LYDVLS 44 (294)
Q Consensus 14 ~~i~ii---G~mG~~iA~~~~~~-G~~V~-~~d~~~ 44 (294)
+||+|+ |.+|..+.+.|.+. ++++. +++...
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~ 36 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE 36 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch
Confidence 379999 89999999999976 66777 556554
Done!