RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13746
(294 letters)
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 302 bits (776), Expect = e-103
Identities = 117/278 (42%), Positives = 158/278 (56%), Gaps = 45/278 (16%)
Query: 17 GII--GLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
I+ GL+G++WAM+FAS G++V LYD+ P
Sbjct: 10 LIVGSGLVGRSWAMLFASGGFRVKLYDI-----------------------------EP- 39
Query: 75 HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECLE 134
QI A I+ ++ Q G LKGSLS EEQ LIS L E +E
Sbjct: 40 -------------RQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVE 86
Query: 135 DAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHP 194
+ IQE VPE L +K +++ +D + +LSSS+S LPS L H Q IVAHP
Sbjct: 87 GVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTGLAHVKQCIVAHP 146
Query: 195 VNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNEC 254
VNPPY+IPLVE+VP TS + RT +M +IG PV + EI GF LNR+Q+A+++E
Sbjct: 147 VNPPYYIPLVELVPHPETSPATVDRTHALMRKIGQSPVRVLKEIDGFVLNRLQYAIISEA 206
Query: 255 YHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLETIHLN 292
+ LV +G++S D+D VMS+GLG+RYAF+GPLET+HLN
Sbjct: 207 WRLVEEGIVSPSDLDLVMSDGLGMRYAFIGPLETMHLN 244
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex,
oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP:
a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A*
1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A*
3hdh_A*
Length = 302
Score = 139 bits (353), Expect = 1e-39
Identities = 54/218 (24%), Positives = 102/218 (46%), Gaps = 8/218 (3%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ----FGLISGTPVL 129
A G+ V L D + + +K I+ +L+ +K + + +E I+ +
Sbjct: 35 AATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDA 94
Query: 130 RECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQF 189
+ + E++ E L++K+++++ +D F + +TI +S+TSS + ++ +T + +F
Sbjct: 95 ASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANATTRQDRF 154
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
H NP + LVE++ TS++ + +G PV+ + GF +NR+
Sbjct: 155 AGLHFFNPVPVMKLVEVIKTPMTSQKTFESLVDFSKALGKHPVS-CKDTPGFIVNRLLVP 213
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
L E L G S +DID M G G +GP E
Sbjct: 214 YLMEAIRLYERGDASKEDIDTAMKLGAGYP---MGPFE 248
>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics,
PSI, protein structure initiative, NYSG oxidoreductase;
2.20A {Escherichia coli}
Length = 483
Score = 143 bits (362), Expect = 2e-39
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 12/217 (5%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ---FGLISGTPVLR 130
A G++V LYD+ +E + A + I L +G L+ E + +
Sbjct: 25 ASHGHQVLLYDISAEALTRAIDGIHARLN----SRVTRGKLTAETCERTLKRLIPVTDIH 80
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFI 190
L A + E+ E L++K ++ + T+L+++TSS + ++ + +
Sbjct: 81 A-LAAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISITAIAAEIKNPERVA 139
Query: 191 VAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAV 250
H NP + LVE+V T+ V+ + E+ G +PV GF +NR+
Sbjct: 140 GLHFFNPAPVMKLVEVVSGLATAAEVVEQLCELTLSWGKQPVR-CHSTPGFIVNRVARPY 198
Query: 251 LNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
+E + + + V + + ID + +G G +GPLE
Sbjct: 199 YSEAWRALEEQVAAPEVIDAALRDGAGFP---MGPLE 232
Score = 78.5 bits (194), Expect = 1e-16
Identities = 28/144 (19%), Positives = 45/144 (31%), Gaps = 10/144 (6%)
Query: 144 PEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAHPVNPPYFIPL 203
+V + D + +L T L+ I +
Sbjct: 298 VSDSFSPMKVEKKSDGVTEIDDVLLIETQGETAQALAIRLARPVVVIDKM------AGKV 351
Query: 204 VEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNECYHLVHDGVL 263
V I AA + + + + G K V + G + R ++NE + GV
Sbjct: 352 VTIAAAAVNPDSATRKAIYYLQQQG-KTVLQIADYPGMLIWRTVAMIINEALDALQKGVA 410
Query: 264 SAKDIDRVMSEGLGLRYAFLGPLE 287
S +DID M G+ GPL
Sbjct: 411 SEQDIDTAMRLGVNYP---YGPLA 431
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI; HET: PE8; 2.00A {Archaeoglobus
fulgidus}
Length = 293
Score = 135 bits (342), Expect = 3e-38
Identities = 62/215 (28%), Positives = 97/215 (45%), Gaps = 25/215 (11%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGTPVLRECL 133
+ ++V L DV + +E A+ I L I T L E +
Sbjct: 31 IASKHEVVLQDVSEKALEAAREQIPEEL------------------LSKIEFTTTL-EKV 71
Query: 134 EDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVAH 193
+D + E+V E L K +V R ++ N L S+TS ++E S+F+ H
Sbjct: 72 KDCDIVMEAVFEDLNTKVEVLREVERLT--NAPLCSNTSVISVDDIAERLDSPSRFLGVH 129
Query: 194 PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLNE 253
+NPP+ +PLVEIV + +T + + + E+G + V +NR AVL+E
Sbjct: 130 WMNPPHVMPLVEIVISRFTDSKTVAFVEGFLRELGKEVVVCK---GQSLVNRFNAAVLSE 186
Query: 254 CYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLET 288
++ +GV A+D+DRV LGL Y GPL
Sbjct: 187 ASRMIEEGV-RAEDVDRVWKHHLGLLYTLFGPLGN 220
Score = 33.7 bits (78), Expect = 0.046
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 17 GIIG--LIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTL 58
+IG L+G+ A+ A + ++V L DV + +E A+ I L
Sbjct: 16 FVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEEL 58
>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase,
peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A
{Arabidopsis thaliana}
Length = 725
Score = 114 bits (288), Expect = 8e-29
Identities = 56/218 (25%), Positives = 100/218 (45%), Gaps = 16/218 (7%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---QFGLISGTPVLR 130
+ Y V L +V + +E ++ LQ KGS+S E+ L+ G+
Sbjct: 332 ILSNYPVILKEVNEKFLEAGIGRVKANLQ----SRVRKGSMSQEKFEKTMSLLKGSLDYE 387
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQF 189
D + E+V E + +K Q++ ++ + + IL+S+TS+ + + + E + + +
Sbjct: 388 S-FRDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST-IDLNKIGERTKSQDRI 445
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
+ AH +P + +PL+EIV TS +VI ++ +I PV + GFA+NR+ F
Sbjct: 446 VGAHFFSPAHIMPLLEIVRTNHTSAQVIVDLLDVGKKIKKTPV-VVGNCTGFAVNRMFFP 504
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
LV G IDR + G+ +GP
Sbjct: 505 YTQAAMFLVECGA-DPYLIDRAI-SKFGMP---MGPFR 537
Score = 29.9 bits (68), Expect = 1.0
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 243 LNRIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLG 277
+ F V+NE + +G+ A D+D G+G
Sbjct: 628 IEMTFFPVVNEACRVFAEGIAVKAADLDIAGIMGMG 663
>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway,
oxidoreductase, lipid metabolism, LY isomerase,
peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A
{Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A*
2x58_A*
Length = 742
Score = 113 bits (284), Expect = 3e-28
Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 20/219 (9%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE-QFGLISGTPVLREC 132
A G V + +Q++ AK I TL+ K + + + + + +E
Sbjct: 336 ARVGISVVAVESDPKQLDAAKKIITFTLE----KEASRAHQNGQASAKPKLRFSSSTKE- 390
Query: 133 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQFIV 191
L + E+V E + +K +V+ + L ++TS+ L ++ + I
Sbjct: 391 LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA-LNVDDIASSTDRPQLVIG 449
Query: 192 AH---PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQF 248
H P + + L+E++P+ ++S I + +IG V + GF NR+
Sbjct: 450 THFFSPAH---VMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV-VVGNCYGFVGNRMLA 505
Query: 249 AVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
N+ + L+ +G +D+D V+ E G + +GP
Sbjct: 506 PYYNQGFFLLEEGS-KPEDVDGVL-EEFGFK---MGPFR 539
Score = 30.3 bits (69), Expect = 0.91
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 245 RIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLG--------LRYA 281
R ++++NE + ++ +G+ + ID + G G + YA
Sbjct: 641 RCLYSLINEAFRILEEGMAARPEHIDVIYLHGYGWPRHKGGPMFYA 686
>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme
type 1, L-bifunction enzyme, MFE-1, fatty acid beta
oxidation; 1.90A {Rattus norvegicus}
Length = 463
Score = 111 bits (280), Expect = 4e-28
Identities = 45/215 (20%), Positives = 91/215 (42%), Gaps = 12/215 (5%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQ-FGLISGTPVLREC 132
A G V + +Q++ AK I TL+ K + + + + + +E
Sbjct: 57 ARVGISVVAVESDPKQLDAAKKIITFTLE----KEASRAHQNGQASAKPKLRFSSSTKE- 111
Query: 133 LEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQFIVA 192
L + E+V E + +K +V+ + L ++TS+ ++ + I
Sbjct: 112 LSTVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSALNVDDIASSTDRPQLVIGT 171
Query: 193 HPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFAVLN 252
H +P + + L+E++P+ ++S I + +IG V + GF NR+ N
Sbjct: 172 HFFSPAHVMRLLEVIPSRYSSPTTIATVMSLSKKIGKIGV-VVGNCYGFVGNRMLAPYYN 230
Query: 253 ECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
+ + L+ +G +D+D V+ E G + +GP
Sbjct: 231 QGFFLLEEGS-KPEDVDGVL-EEFGFK---MGPFR 260
Score = 29.9 bits (68), Expect = 1.1
Identities = 15/83 (18%), Positives = 33/83 (39%), Gaps = 14/83 (16%)
Query: 209 AAWTSERVITRTREIMTEIGMKPVTLT-TEIRGFALNRIQFAVLNECYHLVHDGVL-SAK 266
+ T + ++ T++ EI L R ++++NE + ++ +G+ +
Sbjct: 329 IHKPDPWLSTFLSQYREVHHIEQRTISKEEI----LERCLYSLINEAFRILEEGMAARPE 384
Query: 267 DIDRVMSEGLG--------LRYA 281
ID + G G + YA
Sbjct: 385 HIDVIYLHGYGWPRHKGGPMFYA 407
>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric
complex, lyase, oxidoreductase/transferase complex,
lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP:
a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A*
1wdm_A* 2d3t_A*
Length = 715
Score = 112 bits (283), Expect = 5e-28
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 18/208 (8%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---QFGLISGTPVLR 130
A G + + D+ IE L KG ++P + I T
Sbjct: 334 ASKGTPILMKDINEHGIEQGLAEAAKLLV----GRVDKGRMTPAKMAEVLNGIRPTLSYG 389
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQF 189
+ + + E+V E ++K V ++ + + IL+S+TS+ + S+L++ F
Sbjct: 390 D-FGNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST-ISISLLAKALKRPENF 447
Query: 190 IVAH---PVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRI 246
+ H PV+ +PLVE++ +S+ + T ++G P+ + + GF +NR+
Sbjct: 448 VGMHFFNPVH---MMPLVEVIRGEKSSDLAVATTVAYAKKMGKNPI-VVNDCPGFLVNRV 503
Query: 247 QFAVLNECYHLVHDGVLSAKDIDRVMSE 274
F LV GV ID+VM +
Sbjct: 504 LFPYFGGFAKLVSAGV-DFVRIDKVMEK 530
Score = 30.3 bits (69), Expect = 0.86
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 14/70 (20%)
Query: 222 EIMTEIGMKPVTLT-TEIRGFALNRIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLG-- 277
E++ I + +T +I +N + + E + DG++ +A + D + G+G
Sbjct: 610 EVLKPIVYEQRDVTDEDI----INWMMIPLCLETVRCLEDGIVETAAEADMGLVYGIGFP 665
Query: 278 ------LRYA 281
LRY
Sbjct: 666 LFRGGALRYI 675
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
oxidoreductase; 2.20A {Caenorhabditis elegans}
Length = 460
Score = 100 bits (251), Expect = 4e-24
Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 14/205 (6%)
Query: 74 AHAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEE---QFGLISGTPVLR 130
AG + L ++ + + + L+ + + T
Sbjct: 74 GLAGIETFLVVRNEQRCKQELEVMY-------AREKSFKRLNDKRIEKINANLKITSDFH 126
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLP-SVLSEHSTHRSQF 189
+ L + I ESV E +++K +++ ++ S I ++TSS L + +S S
Sbjct: 127 K-LSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSS-LDLNEISSVLRDPSNL 184
Query: 190 IVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFALNRIQFA 249
+ H NP I LVEI+ + TS + I + I PV L + F NR+
Sbjct: 185 VGIHFFNPANVIRLVEIIYGSHTSSQAIATAFQACESIKKLPV-LVGNCKSFVFNRLLHV 243
Query: 250 VLNECYHLVHDGVLSAKDIDRVMSE 274
++ L+++ ID++++
Sbjct: 244 YFDQSQKLMYEYGYLPHQIDKIITN 268
Score = 29.6 bits (67), Expect = 1.5
Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 9/48 (18%)
Query: 243 LNRIQFAVLNECYHLVHDGVL-SAKDIDRVMSEGLG--------LRYA 281
+N + + +NE Y + +GV+ + ID + G G +R+
Sbjct: 359 INFMLYPTVNEGYRCIEEGVISNESLIDIMFILGFGWPIHSGGPMRFG 406
>3ctv_A HBD-10, 3-hydroxyacyl-COA dehydrogenase; structural genomics,
APC7539, PSI-2, protein structure initiative; 2.46A
{Archaeoglobus fulgidus dsm 4304}
Length = 110
Score = 44.6 bits (106), Expect = 2e-06
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Query: 230 KPVTLTTEIRGFALN--RIQFAVLNECYHLVHDGVLSAKDIDRVMSEGLGLRYAFLGPLE 287
+P + +N F +NE LV GV + +DID + LGL GP E
Sbjct: 6 RPQI-DSSKATDKINPMDFTFVEINEAVKLVEMGVATPQDIDTAIK--LGLNRP-FGPFE 61
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.001
Identities = 57/345 (16%), Positives = 106/345 (30%), Gaps = 108/345 (31%)
Query: 6 SFPAQGGFYPDGIIGLIGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKG 65
S P +IG+I Q A Y V+ +L ++ ++ G
Sbjct: 237 SCP---------LIGVI-QL-------AHYVVTAK-LLGFTPGELRSYLKGAT------G 272
Query: 66 CLKG---SLSPAHAGYKVSLYDVLSEQIEN-------AKNTIQHT------LQDYHQKGC 109
+G +++ A S + + + I +T L+D +
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN- 331
Query: 110 LKGSLSPEEQFGLISGTPVLRECLEDAIF-IQESVPEILQIKHQVYRAIDIFMS-SNTIL 167
+G SP IS +E ++D + +P Q+ I + N ++
Sbjct: 332 -EGVPSP--MLS-ISNLT--QEQVQDYVNKTNSHLPAGKQV------EISLVNGAKNLVV 379
Query: 168 SSSTSSFL------------PSVLSEHSTHRSQ--------FIVAHPVNPPYFIPLVEIV 207
S S L PS L + S+ F+ PV P+ L+
Sbjct: 380 SGPPQS-LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL---PVASPFHSHLLV-- 433
Query: 208 PAAWTSERVITRTREIMTEIGMK----PV----------TLTTEIRGFALNRI------- 246
PA+ + + + K PV L+ I ++ I
Sbjct: 434 PAS---DLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW 490
Query: 247 QFAVLNECYHLVHDGVLSAKDIDRVMS---EGLGLRYAFLGPLET 288
+ + H++ G A + + +G G+R G L+
Sbjct: 491 ETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.1 bits (90), Expect = 0.002
Identities = 24/164 (14%), Positives = 48/164 (29%), Gaps = 55/164 (33%)
Query: 131 EC--LED---AIFIQESVPEILQIKH---QVYRAIDIFMSSNTILSSSTSSFLPSVLSEH 182
+C ++D +I +E + I+ K R +S F+ VL
Sbjct: 34 DCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVL--- 87
Query: 183 STHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMKPVTLTTEIRGFA 242
Y + + T R+ P ++ T +
Sbjct: 88 -------------RINY----------KFLMSPIKTEQRQ--------P-SMMTRMYIEQ 115
Query: 243 LNRIQ-----FAVLN----ECYHLVHDGVLSAKDIDRVMSEGLG 277
+R+ FA N + Y + +L + V+ +G+
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 34.5 bits (79), Expect = 0.041
Identities = 15/120 (12%), Positives = 28/120 (23%), Gaps = 34/120 (28%)
Query: 119 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSV 178
F L+S E + + +++Y+ + + N S + ++
Sbjct: 1014 LFVLVSV----VEAFIASG---------ITDPYEMYKYVHVSEVGNCS--GSGMGGVSAL 1058
Query: 179 LSEHSTHRSQFIVAHPVNPPYFIPLVEIVPAAWTSERVITRTREIMTEIGMK-----PVT 233
PV +AW M I PV
Sbjct: 1059 RGMFKD----RFKDEPVQNDILQESFINTMSAWV----------NMLLISSSGPIKTPVG 1104
>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase,
CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP:
a.100.1.1 c.2.1.6
Length = 478
Score = 33.8 bits (78), Expect = 0.055
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
G++GL +G A+ A G+KV++++ + E + G+L
Sbjct: 5 GVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEE--------FMKANASAPFAGNLKAF 56
Query: 75 H 75
Sbjct: 57 E 57
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L)
stereospecific opine dehydrogenase, oxidoreductase;
1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 33.5 bits (76), Expect = 0.070
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPA 74
++GL G A+A A G V +D+ +++I+ ++ +
Sbjct: 8 AVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDR--GAIIAEGPGLAGTAHPDLL 65
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 33.3 bits (77), Expect = 0.078
Identities = 31/190 (16%), Positives = 52/190 (27%), Gaps = 55/190 (28%)
Query: 69 GSLSPA--HAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPEEQFGLISGT 126
SL+ G+ + E A + L+
Sbjct: 13 ASLAGDLRRRGHYLIGVSRQQSTCEKAV------------------------ERQLVDEA 48
Query: 127 PVLRECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILS--SSTSSFLPSVLSEHST 184
L+ A I P I I + +S I++ +S + ++ S
Sbjct: 49 GQDLSLLQTAKIIFLCTP-IQLIL-PTLEKLIPHLSPTAIVTDVASVKT---AIAEPASQ 103
Query: 185 HRSQFIVAHP-----------------VNPPYFIPLVEIVPAAWTSERVITRTREIMTEI 227
S FI HP VN PY + P +T + R ++ +
Sbjct: 104 LWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVL-----TPTEYTDPEQLACLRSVLEPL 158
Query: 228 GMKPVTLTTE 237
G+K T
Sbjct: 159 GVKIYLCTPA 168
>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3,
oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A
{Staphylococcus aureus} PDB: 3ojl_A*
Length = 431
Score = 33.4 bits (77), Expect = 0.090
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT--------LQDYHQKGC 66
++GL IG +++FA G V D+ + I+ +N ++ G
Sbjct: 15 TVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGK 74
Query: 67 LKGSLSPAHA 76
LK S +P +
Sbjct: 75 LKVSTTPEAS 84
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 31.6 bits (71), Expect = 0.27
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 17 GIIGLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51
G G +G + + ++ ++ E + +
Sbjct: 18 GAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQ 52
Score = 27.3 bits (60), Expect = 6.2
Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 131 ECLEDAIFIQESVPEILQIKHQVYRAIDIFMSSNTILSSSTSSFLPSVLSEHSTHRSQ-- 188
+++A + ++P+ + K V I + TI+ ++ + + R+
Sbjct: 63 GWIDEADVVVLALPDNIIEK--VAEDIVPRVRPGTIVLILDAA---APYAGVMPERADIT 117
Query: 189 FIVAHPVNPPYFIP 202
+ + HP +PP F
Sbjct: 118 YFIGHPCHPPLFND 131
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold,
oxidoreductase; HET: NAD; 1.75A {Sulfolobus
acidocaldarius}
Length = 254
Score = 31.3 bits (72), Expect = 0.30
Identities = 8/34 (23%), Positives = 16/34 (47%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+A A FA V ++L +++ ++
Sbjct: 19 IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR 52
>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet
of seven strands in the order 3214567; HET: NDP; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 280
Score = 31.0 bits (71), Expect = 0.33
Identities = 19/83 (22%), Positives = 35/83 (42%), Gaps = 16/83 (19%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVS 81
IG+ A++FA G V++ SE++E + I + G + ++ A
Sbjct: 18 IGRTTAILFAQEGANVTITGRSSERLEETRQIIL-------KSGVSEKQVNSVVA----- 65
Query: 82 LYDVLSEQIENAKNTIQHTLQDY 104
DV +E + I TL+ +
Sbjct: 66 --DVTTE--DGQDQIINSTLKQF 84
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein]
reductase; PSI-biology, structural genomics, protein
structure initiati nysgrc; 2.70A {Sinorhizobium
meliloti}
Length = 283
Score = 31.0 bits (71), Expect = 0.38
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+A A+ A+ G V ++E + I
Sbjct: 40 IGRATALALAADGVTVGALGRTRTEVEEVADEIV 73
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens}
PDB: 2vq3_A*
Length = 215
Score = 30.3 bits (68), Expect = 0.51
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLY 40
GI+G ++ A +G+KV +
Sbjct: 32 GILGSGDFARSLATRLVGSGFKVVVG 57
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 30.2 bits (69), Expect = 0.60
Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 31/140 (22%)
Query: 121 GLI-SGTPVLRECLEDA--IFIQESVPEILQIKHQVYRAIDIFMSSNTILS---SSTSSF 174
G++ T + A I + +VP I + + D+ + + I++ S+
Sbjct: 51 GIVDEATADFKVFAALADVIIL--AVP-IKKTIDFIKILADLDLKEDVIITDAGSTKYEI 107
Query: 175 LPSVLSEHSTHRSQFIVAHP-----------------VNPPYFIPLVEIVPAAWTSERVI 217
+ + QF+ +HP N Y P+ T I
Sbjct: 108 VRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIF-----SPSCLTKPNTI 162
Query: 218 TRTREIMTEIGMKPVTLTTE 237
+++++ + + V +
Sbjct: 163 PALQDLLSGLHARYVEIDAA 182
>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase,
structural genomics, SH dehydrogenase/reductase,
inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP:
c.2.1.2
Length = 267
Score = 30.3 bits (69), Expect = 0.64
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+A+A G KV+L D E K +
Sbjct: 19 IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH 52
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A
{Gluconobacter oxydans}
Length = 260
Score = 29.8 bits (68), Expect = 0.80
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG A A AG +V + D+ A ++
Sbjct: 25 IGLACVTALAEAGARVIIADLDEAMATKAVEDLR 58
>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain
dehydrogenase/reductase, steroid metabolism, LIP
metabolism, structural genomics; HET: NAD; 2.00A {Homo
sapiens}
Length = 264
Score = 29.8 bits (68), Expect = 0.86
Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVS 81
IG+A ++ A G V+ D+ + + G +G HA ++
Sbjct: 19 IGRAVSVRLAGEGATVAACDLDRAAAQETVRLLG-------GPGSKEGPPRGNHAAFQAD 71
Query: 82 LYDVLSEQIENAKNTIQ 98
+ + + +Q
Sbjct: 72 VSE--ARAARCLLEQVQ 86
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP
oxidoreductase coenzyme F420-dependent, structural
genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum
WCFS1}
Length = 209
Score = 29.4 bits (65), Expect = 1.0
Identities = 11/40 (27%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTI 54
I G +GQA F AG++V+ Y + + I
Sbjct: 23 TIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQATTLGEIVI 62
>3dtt_A NADP oxidoreductase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Length = 245
Score = 29.7 bits (66), Expect = 1.1
Identities = 6/25 (24%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSL 39
++G +G+ A A G++V++
Sbjct: 23 AVLGTGTVGRTMAGALADLGHEVTI 47
>1xhl_A Short-chain dehydrogenase/reductase family member putative
tropinone reductase-II...; parallel beta-sheet of seven
strands in the order 3214567; HET: NDP TNE; 2.40A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 297
Score = 29.5 bits (67), Expect = 1.1
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG++ A+IFA G +V++ +++E K I
Sbjct: 38 IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL 71
>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET:
NAP; 2.20A {Rattus norvegicus}
Length = 201
Score = 29.2 bits (65), Expect = 1.2
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 2/23 (8%)
Query: 17 GIIGL--IGQAWAMIFASAGYKV 37
I G G++ + GY V
Sbjct: 23 CIFGTGDFGKSLGLKMLQCGYSV 45
>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold,
structural genomics; HET: NAP F42; 1.65A {Archaeoglobus
fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*
Length = 212
Score = 29.1 bits (64), Expect = 1.3
Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 17 GIIGL---IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGC 66
++G +G+ A+ A+ G+++ + E+ E + D G
Sbjct: 4 ALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGM 56
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial
transcription repressor, DNA B protein; 1.80A
{Mycobacterium tuberculosis} SCOP: a.4.5.39
Length = 138
Score = 28.8 bits (64), Expect = 1.3
Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 12/87 (13%)
Query: 39 LYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVSLYDVLSEQIENAKNTIQ 98
+++ LS + + A T+ LQ +K + + Y + + E +
Sbjct: 30 VHEALSARRDLAYTTVMAVLQRLAKKNLVL-----QIRDDRAHRYAPVHGRDELVAGLMV 84
Query: 99 HTLQDYHQKGCLK-------GSLSPEE 118
L G + + +E
Sbjct: 85 DALAQAEDSGSRQAALVHFVERVGADE 111
>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt,
oxidoreductase, gluconate utilization; HET: ATR RES
P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A*
2iyo_A*
Length = 474
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHT 57
G++G+ +G+ A+ S GY V++Y+ + + E Q
Sbjct: 9 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDK 51
>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet
of seven strands in the order 3214567; 2.10A
{Caenorhabditis elegans} SCOP: c.2.1.2
Length = 278
Score = 29.1 bits (66), Expect = 1.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+A A++FA G KV++ +E++E + I
Sbjct: 18 IGRATAVLFAREGAKVTITGRHAERLEETRQQIL 51
>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose
phosphate pathway, oxidoreductase, 6-phosphogl
dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB:
2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*
Length = 480
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLYDVLSEQIEN 49
G++G+ +G+ A+ S GY VS+++ E+ E
Sbjct: 19 GVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEE 53
>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding
domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter
oxydans} SCOP: c.2.1.2
Length = 262
Score = 29.1 bits (66), Expect = 1.6
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG A A+ A G ++L D+ E +E A+ +++
Sbjct: 19 IGLATALRLAEEGTAIALLDMNREALEKAEASVR 52
>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia
aquatica} SCOP: c.2.1.2
Length = 267
Score = 28.7 bits (65), Expect = 1.9
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
+G+A A+ A+ G K+SL DV SE +E +K +
Sbjct: 25 LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVL 58
>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics
center for infectious disease, ssgcid, oxidoreductase,
structural genomics; 2.20A {Brucella melitensis}
Length = 256
Score = 28.6 bits (65), Expect = 2.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+A A FA AG V + D+ SE E I+
Sbjct: 24 IGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIR 57
>2o9u_X Monellin chain B and monellin chain A; alternative conformations,
3-10 polyproline II helix, plant protein; 1.15A
{Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A
1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A
1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B*
2q33_A*
Length = 97
Score = 27.3 bits (60), Expect = 2.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 119 QFGLISGTPVLRECLEDAIFIQESVPEILQIKHQVY 154
Q+G ++ V+R C++ I+ E EI ++Q+Y
Sbjct: 29 QYGRLTFNKVIRPCMKKTIYENEGFREIKGYEYQLY 64
>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP]
reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc;
2.16A {Bacteroides thetaiotaomicron}
Length = 250
Score = 28.7 bits (65), Expect = 2.1
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG A A+ GY+V L + +E + I
Sbjct: 19 IGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIM 52
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein]
reductase; structural genomics; 2.25A {Mycobacterium
avium subsp}
Length = 253
Score = 28.6 bits (65), Expect = 2.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IGQA+A A G V + D+ +E E I
Sbjct: 21 IGQAYAEALAREGAAVVVADINAEAAEAVAKQIV 54
>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition,
oxidoreductase; HET: NAD; 2.00A {Brevibacterium
saccharolyticum}
Length = 258
Score = 28.7 bits (65), Expect = 2.3
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+ + A+ G+ +++ D L +Q E A TI+
Sbjct: 14 IGRGISEKLAADGFDIAVAD-LPQQEEQAAETIK 46
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD;
1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Length = 256
Score = 28.3 bits (64), Expect = 2.7
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+A A+ G+ V++ D + + I
Sbjct: 14 IGKAIALRLVKDGFAVAIADYNDATAKAVASEIN 47
>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain
dehydrogenase/reductase, bIle acid catabolism,
oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli}
SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*
Length = 255
Score = 28.2 bits (64), Expect = 2.7
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+ A+ FA+AG V + D+ ++ + + IQ
Sbjct: 23 IGKEIAITFATAGASVVVSDINADAANHVVDEIQ 56
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 28.5 bits (64), Expect = 2.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 19 IGLIGQAWAMIFASAGYKVSLYD 41
G +G +A ++GY +S+ D
Sbjct: 30 YGKLGGLFARYLRASGYPISILD 52
>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1
Length = 133
Score = 27.6 bits (62), Expect = 3.1
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 12/64 (18%)
Query: 218 TRTREIMTEIGMKPVTLTTEIRGF-AL-----NRIQ-FAVLNECYHLVHDGVLSAKDIDR 270
T+ E MT +T+ + AL I+ V+++ +L G++S +DI R
Sbjct: 67 TKAEEFMTA---SLITIREDSPITGALALMRQFNIRHLPVVDDKGNLK--GIISIRDITR 121
Query: 271 VMSE 274
+ +
Sbjct: 122 AIDD 125
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics,
oxidoreductase, PSI-2, protein structure initiative;
1.90A {Novosphingobium aromaticivorans DSM12444}
Length = 319
Score = 28.1 bits (63), Expect = 3.8
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
+G + G KV++ D+ + I+ A T++
Sbjct: 20 VGIGLVRQLLNQGCKVAIADIRQDSIDKALATLE 53
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 27.9 bits (63), Expect = 3.9
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+ A + A + V + ++ + I+
Sbjct: 56 IGREIAKMLAKSVSHVICISRTQKSCDSVVDEIK 89
>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain
dehydrogenases/reductases (SDR), X-RAY crystallography,
oxidoreductase; 2.69A {Candida parapsilosis}
Length = 279
Score = 27.9 bits (63), Expect = 4.3
Identities = 15/85 (17%), Positives = 28/85 (32%), Gaps = 23/85 (27%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVS 81
IG A A +A AG V+++ E A++ G
Sbjct: 46 IGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQ-------------------KTYGVHSK 86
Query: 82 LY--DVLSEQIENAKNTIQHTLQDY 104
Y ++ ++ + TI +D+
Sbjct: 87 AYKCNISDP--KSVEETISQQEKDF 109
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide
catalysis, enantioselectivity, lyase; HET: RNO; 1.70A
{Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A
1px0_A* 1pwx_A* 1zo8_A*
Length = 254
Score = 27.5 bits (62), Expect = 4.5
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQ 59
G A+ + AG+ V+ +D +Q + + + Q
Sbjct: 13 GGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQ 50
>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase;
reductase,hyperthermophIle, structural genomics, PSI,
protei structure initiative; 2.30A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 263
Score = 27.5 bits (62), Expect = 4.6
Identities = 8/29 (27%), Positives = 12/29 (41%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENA 50
IG+A +FA G + D + A
Sbjct: 18 IGRAALDLFAREGASLVAVDREERLLAEA 46
>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase
(CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1
c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*
Length = 482
Score = 27.9 bits (63), Expect = 4.6
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 10/54 (18%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLY--------DVLSEQIENAKNTIQHTLQD 60
+IGL +GQ + G+ V + D L+ + + K H+L++
Sbjct: 6 ALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEE 59
>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 1.95A {Mycobacterium marinum}
Length = 276
Score = 27.5 bits (62), Expect = 4.7
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+ A+ +A AG +V++ S+ ++ + I
Sbjct: 44 IGKKVALAYAEAGAQVAVAARHSDALQVVADEIA 77
>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.50A {Sinorhizobium meliloti}
Length = 281
Score = 27.6 bits (62), Expect = 5.1
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
+G+ A ++ GY V + + ++ A I
Sbjct: 45 VGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIG 78
>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold,
beta-alpha-beta motifs, open twisted sheet, A NADP,
oxidoreductase; 2.30A {Cladosporium herbarum} PDB:
3gdf_A
Length = 267
Score = 27.5 bits (62), Expect = 5.2
Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 21/85 (24%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQHTLQDYHQKGCLKGSLSPAHAGYKVS 81
+G A A G V++ + A+ ++ + Y G K
Sbjct: 34 MGIEAARGCAEMGAAVAITYASRA--QGAEENVKELEKTY---------------GIKAK 76
Query: 82 LY--DVLSEQIENAKNTIQHTLQDY 104
Y V S E+ + ++ + D+
Sbjct: 77 AYKCQVDSY--ESCEKLVKDVVADF 99
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 27.6 bits (62), Expect = 5.6
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLYDV 42
G++G IGQ + I G KV YD+
Sbjct: 150 GVVGTGHIGQVFMQIMEGFGAKVITYDI 177
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD
binding; 2.30A {Thermoplasma volcanium}
Length = 269
Score = 27.1 bits (61), Expect = 5.8
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQH 56
IG A G KV + + N + +
Sbjct: 26 IGLAVVDALVRYGAKVVSVSLDEKSDVNVSDHFKI 60
>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold,
oxidoreductase; HET: FLC; 2.37A {Saccharomyces
cerevisiae}
Length = 497
Score = 27.6 bits (62), Expect = 6.1
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 10/54 (18%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLY--------DVLSEQIENAKNTIQHTLQD 60
G+IGL +GQ + A G+ V Y L+ + + +++D
Sbjct: 14 GLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIED 67
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 27.2 bits (61), Expect = 6.1
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLYDV 42
G+IG IG AM + G KV YDV
Sbjct: 145 GVIGTGRIGSRVAMYGLAFGMKVLCYDV 172
>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 2.00A {Mycobacterium ulcerans}
Length = 281
Score = 27.1 bits (61), Expect = 6.1
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+ A +AG V + +++ A ++
Sbjct: 23 IGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELE 56
>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural
genomics, riken structural genomics/proteomics
initiative, RSGI; 2.40A {Thermus thermophilus} SCOP:
c.2.1.2
Length = 245
Score = 27.1 bits (61), Expect = 6.1
Identities = 8/34 (23%), Positives = 15/34 (44%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+A +FA G ++ D+ + A +
Sbjct: 17 IGRATLELFAKEGARLVACDIEEGPLREAAEAVG 50
>2w8m_A ORF D212, D212; SSV1, crenarchaeal virus, hydrolase; 2.40A
{Sulfolobus virus ragged hills}
Length = 212
Score = 27.0 bits (59), Expect = 6.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 9 AQGGFYPDGIIGLIGQAWAMIFASAGYKVSLYDVLSEQIENAK 51
A+ +YP I + G +W + Y S+Y +LS ++E AK
Sbjct: 86 AKDSYYPLLWIDITGSSWTEEQSKERYGESIYAILSVKVETAK 128
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC,
structural genomics, protein structure initiative;
1.87A {Rhodopseudomonas palustris}
Length = 252
Score = 26.9 bits (60), Expect = 7.1
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG A FA+ G+ V E++ I+
Sbjct: 19 IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIE 52
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A
{Uncultured bacterium BIO5}
Length = 262
Score = 26.8 bits (60), Expect = 7.4
Identities = 10/34 (29%), Positives = 14/34 (41%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG A A S G +V L E++ + I
Sbjct: 41 IGAAIARKLGSLGARVVLTARDVEKLRAVEREIV 74
>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A
non-pathogenic dehydrogenase, structural genomics;
1.95A {Mycobacterium smegmatis}
Length = 266
Score = 26.7 bits (60), Expect = 7.7
Identities = 6/34 (17%), Positives = 12/34 (35%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG A G V + D ++ ++ +
Sbjct: 35 IGSTTARRALLEGADVVISDYHERRLGETRDQLA 68
>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET:
NAD KPC; 1.8A {Xanthobacter autotrophicus}
Length = 250
Score = 26.7 bits (60), Expect = 8.6
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENA 50
G A A F + G +V+ D+ +E +E
Sbjct: 14 NGLAIATRFLARGDRVAALDLSAETLEET 42
>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold,
oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB:
3afm_A*
Length = 258
Score = 26.7 bits (60), Expect = 8.7
Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG A A +FA AG KV L+ + N TI
Sbjct: 19 IGLATARLFARAGAKVGLHGRKAP--ANIDETIA 50
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 26.8 bits (60), Expect = 8.8
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLYDV 42
G++G IGQ +F G KV YD
Sbjct: 149 GVMGTGHIGQVAIKLFKGFGAKVIAYDP 176
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 26.8 bits (60), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 17 GIIGL--IGQAWAMIFASAGYKVSLYDV 42
G++GL IG+ A IF G V DV
Sbjct: 150 GVVGLGRIGRVAAQIFHGMGATVIGEDV 177
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold,
oxidoreductase; 1.70A {Clostridium thermocellum atcc
27405} PDB: 3dij_A* 3ged_A 3geg_A*
Length = 247
Score = 26.7 bits (60), Expect = 9.8
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKN 52
IG+ + F AG KV D+ ++ +
Sbjct: 14 IGKQICLDFLEAGDKVCFIDIDEKRSADFAK 44
>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc,
oxidoreductase; HET: NAP; 1.93A {Sinorhizobium
meliloti}
Length = 280
Score = 26.7 bits (60), Expect = 9.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIENAKNTIQ 55
IG+A A++FA G KV + + + I
Sbjct: 20 IGRAAALLFAREGAKVVVTARNGNALAELTDEIA 53
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Length = 272
Score = 26.4 bits (59), Expect = 10.0
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 22 IGQAWAMIFASAGYKVSLYDVLSEQIE 48
+G+A A+ A AGY V+L + ++
Sbjct: 40 VGRAVAVALAGAGYGVALAGRRLDALQ 66
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.393
Gapped
Lambda K H
0.267 0.0837 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,377,848
Number of extensions: 251568
Number of successful extensions: 832
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 124
Length of query: 294
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 201
Effective length of database: 4,105,140
Effective search space: 825133140
Effective search space used: 825133140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.5 bits)