BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13750
(173 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VWX|A Chain A, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|B Chain B, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|C Chain C, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
pdb|3VWX|D Chain D, Structural Analysis Of An Epsilon-class Glutathione
S-transferase From Housefly, Musca Domestica
Length = 222
Score = 111 bits (278), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 102/173 (58%), Gaps = 8/173 (4%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGF 62
L LY + SPPVRA L ++AL L Y+ VNLF KE+L +L+KNP H+VP L+++G
Sbjct: 4 LVLYGIDPSPPVRACLLTLKALNLPFEYKVVNLFAKEHLSEEYLKKNPQHTVPTLEEDGH 63
Query: 63 ILWDRTSMVGPIL--YFKNDS-PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFR 119
++WD +++ ++ Y K+DS P +K ++ + + V F G TA L FR
Sbjct: 64 LIWDSHAIMAYLVSKYGKDDSLYPKDLLKRAVVDQRMYFE-AGVLFQGGLRNITAPLFFR 122
Query: 120 ILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTL 172
+ IP+ I + Y +E FL+ Y+A DH+TIADFSIVT++T+L
Sbjct: 123 ----NQTQIPQHQIDSIVESYGFLESFLKNNKYMAGDHLTIADFSIVTSVTSL 171
>pdb|2IL3|A Chain A, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
pdb|2IL3|B Chain B, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
pdb|2IMI|A Chain A, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
pdb|2IMI|B Chain B, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
pdb|2IMK|A Chain A, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
pdb|2IMK|B Chain B, Structures Of An Insect Epsilon-Class Glutathione S-
Transferase From The Malaria Vector Anopheles Gambiae:
Evidence For High Ddt-Detoxifying Activity
Length = 221
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/173 (36%), Positives = 102/173 (58%), Gaps = 10/173 (5%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGF 62
L LY +H SPP RA +L +ALGLE+ + +NL ++L+P F++ NP H++PVLDDNG
Sbjct: 4 LVLYTLHLSPPCRAVELTAKALGLELEQKTINLLTGDHLKPEFVKLNPQHTIPVLDDNGT 63
Query: 63 ILWDRTSMVGPIL--YFKNDS-PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFR 119
I+ + +++ ++ Y K+DS P VK ++ L + V FA F+ R
Sbjct: 64 IITESHAIMIYLVTKYGKDDSLYPKDPVKQARVNSALHFE-SGVLFA-----RMRFIFER 117
Query: 120 ILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTL 172
ILF K DIPE+ + + Y L+E L ++A +TIADFS ++T++++
Sbjct: 118 ILFFGKSDIPEDRVEYVQKSYELLEDTLVD-DFVAGPTMTIADFSCISTISSI 169
>pdb|3AY8|A Chain A, Glutathione S-Transferase Unclassified 2 From Bombyx Mori
Length = 216
Score = 94.4 bits (233), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 60/181 (33%), Positives = 92/181 (50%), Gaps = 23/181 (12%)
Query: 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNG 61
+L LY+ S P R L RA+G+ + E VNLF+KE LQ +FL+ NP H VP LDDN
Sbjct: 3 SLKLYHFPVSGPSRGALLAARAIGIPIQIEIVNLFKKEQLQESFLKLNPQHCVPTLDDNN 62
Query: 62 FILWDRTSMVGPIL--YFKNDS--------PPVRSVKLCLLSLDLTVQLKQVTFAPGETL 111
F+LW+ ++ + Y K+D V + +L S L V+++ + F
Sbjct: 63 FVLWESRAIACYLADKYGKDDQWYPKDLQKRAVVNQRLYFDSASLYVKIRAICFP----- 117
Query: 112 DTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTT 171
ILF + +I + S + +FLEK ++A DH TIAD SI ++++
Sbjct: 118 --------ILFLGETEIKQSLKDDLNSTLSFLNQFLEKTKWVAADHPTIADTSIYASMSS 169
Query: 172 L 172
+
Sbjct: 170 I 170
>pdb|1PN9|A Chain A, Crystal Structure Of An Insect Delta-class Glutathione S-
Transferase From A Ddt-resistant Strain Of The Malaria
Vector Anopheles Gambiae
pdb|1PN9|B Chain B, Crystal Structure Of An Insect Delta-class Glutathione S-
Transferase From A Ddt-resistant Strain Of The Malaria
Vector Anopheles Gambiae
Length = 209
Score = 93.6 bits (231), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 18/178 (10%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGF 62
+ YY+ GS P RA Q+ A+G+E+N + +L + E+++P FL+ NP H +P L DNGF
Sbjct: 1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTDLMKGEHMKPEFLKLNPQHCIPTLVDNGF 60
Query: 63 ILWDRTSMVGPIL--YFKND-----SPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAF 115
LW+ ++ + Y K+D P R+V L D+ ++ A
Sbjct: 61 ALWESRAIQIYLAEKYGKDDKLYPKDPQKRAVVNQRLYFDMGTLYQRF----------AD 110
Query: 116 LKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTLE 173
+ +FAK+ P EN ++ +D + FLE Y A + +TIAD S+ T+ T E
Sbjct: 111 YHYPQIFAKQPANP-ENEKKMKDAVGFLNTFLEGQEYAAGNDLTIADLSLAATIATYE 167
>pdb|4HI7|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Drosophilia Mojavensis, Target Efi-501819, With Bound
Glutathione
pdb|4HI7|B Chain B, Crystal Structure Of Glutathione Transferase Homolog From
Drosophilia Mojavensis, Target Efi-501819, With Bound
Glutathione
Length = 228
Score = 92.8 bits (229), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 59/164 (35%), Positives = 87/164 (53%), Gaps = 12/164 (7%)
Query: 5 LYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFIL 64
LY + SPPVRA +L + AL L +Y+ VNL KE +L+KNP H+VP+L+D +
Sbjct: 6 LYGIDASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLKKNPQHTVPLLEDGDANI 65
Query: 65 WDRTSMVGPIL--YFKNDS-PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAF--LKFR 119
D +++ ++ Y K+DS P VK L+ ++ F G A L
Sbjct: 66 ADSHAIMAYLVSKYGKDDSLYPKDLVKRALVD-------NRMYFESGVVFANALRSLAKM 118
Query: 120 ILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADF 163
ILF K ++P+E I + Y VE F + TY+A + +TIADF
Sbjct: 119 ILFLGKTEVPQERIDAITEAYDFVEAFFKDQTYVAGNQLTIADF 162
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%)
Query: 70 MVGPILYFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLK 117
MV PILY + SPPVR+VKL L +L L K V E +LK
Sbjct: 1 MVKPILYGIDASPPVRAVKLTLAALQLPYDYKIVNLMNKEQHSEEYLK 48
>pdb|1JLV|A Chain A, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|B Chain B, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|C Chain C, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|D Chain D, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|E Chain E, Anopheles Dirus Species B Glutathione S-transferases 1-3
pdb|1JLV|F Chain F, Anopheles Dirus Species B Glutathione S-transferases 1-3
Length = 209
Score = 92.4 bits (228), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/178 (30%), Positives = 92/178 (51%), Gaps = 18/178 (10%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGF 62
+ YY+ GS P RA Q+ A+G+E+N + NL E+++P FL+ NP H +P L DNGF
Sbjct: 1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKINPQHCIPTLVDNGF 60
Query: 63 ILWDRTSMVGPIL--YFKNDS-----PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAF 115
LW+ ++ + Y K+D P R+V L D+ ++ A
Sbjct: 61 ALWESRAICTYLAEKYGKDDKLYPKDPQKRAVVNQRLYFDMGTLYQRF----------AD 110
Query: 116 LKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTLE 173
+ +FAK+ EN ++ +D + FL+ Y+A D +TIAD +++ T++T +
Sbjct: 111 YYYPQIFAKQP-ANAENEKKMKDAVDFLNTFLDGHKYVAGDSLTIADLTVLATVSTYD 167
>pdb|3EIN|A Chain A, Delta Class Gst
pdb|3MAK|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd1 From
Drosophila Melanogaster, In Complex With Glutathione
Length = 209
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 58/178 (32%), Positives = 92/178 (51%), Gaps = 22/178 (12%)
Query: 5 LYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFIL 64
YY+ GS P R+ + +A+G+E+N + +NL E+L+P FL+ NP H++P L DNGF L
Sbjct: 4 FYYLPGSSPCRSVIMTAKAVGVELNKKLLNLQAGEHLKPEFLKINPQHTIPTLVDNGFAL 63
Query: 65 WDRTSMVGPIL--YFKNDS-----PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLK 117
W+ ++ ++ Y K DS P R+V L D+ TL +F
Sbjct: 64 WESRAIQVYLVEKYGKTDSLYPKCPKKRAVINQRLYFDMG------------TLYQSFAN 111
Query: 118 FRI--LFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTLE 173
+ +FAK PE ++ + + FLE Y A D +T+AD ++V T++T E
Sbjct: 112 YYYPQVFAKAPADPEA-FKKIEAAFEFLNTFLEGQDYAAGDSLTVADIALVATVSTFE 168
>pdb|1JLW|A Chain A, Anopheles Dirus Species B Glutathione S-Transferases 1-4
pdb|1JLW|B Chain B, Anopheles Dirus Species B Glutathione S-Transferases 1-4
pdb|3F63|A Chain A, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, In Complex With S-Hexyl Glutathione
pdb|3F63|B Chain B, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, In Complex With S-Hexyl Glutathione
pdb|3G7I|A Chain A, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, With Glutathione Complexed In One
Subunit
pdb|3G7I|B Chain B, Crystal Structure Of A Delta Class Gst (Adgstd4-4) From
Anopheles Dirus, With Glutathione Complexed In One
Subunit
Length = 219
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 91/186 (48%), Gaps = 25/186 (13%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVL-DDNG 61
+ YY+ GS P RA Q+ A+G+E+N + NL E+++P FL+ NP H +P L D++G
Sbjct: 1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNPQHCIPTLVDEDG 60
Query: 62 FILWDRTSMVGPIL--YFKNDS----------PPVRSVKLCLLSLDLTVQLKQVTFAPGE 109
F+LW+ ++ ++ Y +D+ P R+V L D+ V ++
Sbjct: 61 FVLWESRAIQIYLVEKYGAHDADLAERLYPSDPRRRAVVHQRLFFDVAVLYQRF------ 114
Query: 110 TLDTAFLKFRILFAKKKDIPEEN-IRRTRDVYSLVEKFLEKWTYIA-CDHITIADFSIVT 167
A + +F +K + + +R + FLE Y+A D TIAD SI+
Sbjct: 115 ----AEYYYPQIFGQKVPVGDPGRLRSMEQALEFLNTFLEGEQYVAGGDDPTIADLSILA 170
Query: 168 TLTTLE 173
T+ T E
Sbjct: 171 TIATYE 176
>pdb|3F6D|A Chain A, Crystal Structure Of A Genetically Modified Delta Class
Gst (Adgstd4- 4) From Anopheles Dirus, F123a, In Complex
With S-Hexyl Glutathione
pdb|3F6D|B Chain B, Crystal Structure Of A Genetically Modified Delta Class
Gst (Adgstd4- 4) From Anopheles Dirus, F123a, In Complex
With S-Hexyl Glutathione
Length = 219
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 29/188 (15%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVL-DDNG 61
+ YY+ GS P RA Q+ A+G+E+N + NL E+++P FL+ NP H +P L D++G
Sbjct: 1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNPQHCIPTLVDEDG 60
Query: 62 FILWDRTSMVGPIL--YFKNDS----------PPVRSVKLCLLSLDLTVQLKQVTFAPGE 109
F+LW+ ++ ++ Y +D+ P R+V L D+ V
Sbjct: 61 FVLWESRAIQIYLVEKYGAHDADLAERLYPSDPRRRAVVHQRLFFDVAV----------- 109
Query: 110 TLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVE---KFLEKWTYIA-CDHITIADFSI 165
L F ++ + +P + R R + +E FLE Y+A D TIAD SI
Sbjct: 110 -LYQRFAEYYYPQIAGQKVPVGDPGRLRSMEQALEFLNTFLEGEQYVAGGDDPTIADLSI 168
Query: 166 VTTLTTLE 173
+ T+ T E
Sbjct: 169 LATIATYE 176
>pdb|3G7J|A Chain A, Crystal Structure Of A Genetically Modified Delta Class
Gst (adgstd4- 4) From Anopheles Dirus, Y119e, In Complex
With S-hexyl Glutathione
pdb|3G7J|B Chain B, Crystal Structure Of A Genetically Modified Delta Class
Gst (adgstd4- 4) From Anopheles Dirus, Y119e, In Complex
With S-hexyl Glutathione
Length = 219
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 29/188 (15%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVL-DDNG 61
+ YY+ GS P RA Q+ A+G+E+N + NL E+++P FL+ NP H +P L D++G
Sbjct: 1 MDFYYLPGSAPCRAVQMTAAAVGVELNLKLTNLMAGEHMKPEFLKLNPQHCIPTLVDEDG 60
Query: 62 FILWDRTSMVGPIL--YFKNDS----------PPVRSVKLCLLSLDLTVQLKQVT--FAP 107
F+LW+ ++ ++ Y +D+ P R+V L D+ V ++ + P
Sbjct: 61 FVLWESRAIQIYLVEKYGAHDADLAERLYPSDPRRRAVVHQRLFFDVAVLYQRFAEYYEP 120
Query: 108 GETLDTAFLKFRILFAKKKDIPEEN-IRRTRDVYSLVEKFLEKWTYIA-CDHITIADFSI 165
+F +K + + +R + FLE Y+A D TIAD SI
Sbjct: 121 Q------------IFGQKVPVGDPGRLRSMEQALEFLNTFLEGEQYVAGGDDPTIADLSI 168
Query: 166 VTTLTTLE 173
+ T+ T E
Sbjct: 169 LATIATYE 176
>pdb|1R5A|A Chain A, Glutathione S-Transferase
Length = 218
Score = 75.5 bits (184), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 91/186 (48%), Gaps = 30/186 (16%)
Query: 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN 60
M LYY+ SPP R+ L + +G+E++ + +N+ + E L+P F+E NP H +P +DD+
Sbjct: 1 MTTVLYYLPASPPCRSVLLLAKMIGVELDLKVLNIMEGEQLKPDFVELNPQHCIPTMDDH 60
Query: 61 GFILWDRTSMVGPIL--YFKNDS--PP---VRSVKLCLLSLDLTVQLKQV------TFAP 107
G +LW+ ++ ++ Y K+++ P R++ L DL ++V T
Sbjct: 61 GLVLWESRVILSYLVSAYGKDENLYPKDFRSRAIVDQRLHFDLGTLYQRVVDYYFPTIHL 120
Query: 108 GETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVT 167
G LD KK + E E L+++ + A +H TIAD ++
Sbjct: 121 GAHLDQ---------TKKAKLAE--------ALGWFEAMLKQYQWSAANHFTIADIALCV 163
Query: 168 TLTTLE 173
T++ +E
Sbjct: 164 TVSQIE 169
>pdb|3F6F|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd10 From
Drosophila Melanogaster
pdb|3GH6|A Chain A, Crystal Structure Of Glutathione Transferase Dmgstd10 From
Drosophila Melanogaster, In Complex With Glutathione
Length = 210
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/178 (29%), Positives = 87/178 (48%), Gaps = 17/178 (9%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYE-FVNLFQKENLQPAFLEKNPMHSVPVLDDNG 61
+ LYY GS P R+ + +ALG+E + + +N +E P +L+ NP H++P L D+G
Sbjct: 1 MDLYYRPGSAPCRSVLMTAKALGVEFDKKTIINTRAREQFTPEYLKINPQHTIPTLHDHG 60
Query: 62 FILWD-RTSMVGPILYFKNDSP--PVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKF 118
F LW+ R MV + + D P K L++ L + TL +F ++
Sbjct: 61 FALWESRAIMVYLVEKYGKDDKLFPKDVQKQALINQRLYFDMG--------TLYKSFSEY 112
Query: 119 ---RILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTLE 173
+I KK EEN ++ + + FLE TY A ++AD + + T++T +
Sbjct: 113 YYPQIFL--KKPANEENYKKIEVAFEFLNTFLEGQTYSAGGDYSLADIAFLATVSTFD 168
>pdb|3VK9|A Chain A, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|B Chain B, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|C Chain C, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
pdb|3VK9|D Chain D, Crystal Structure Of Delta-Class Glutathione Transferase
From Silkmoth
Length = 216
Score = 73.2 bits (178), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 95/182 (52%), Gaps = 22/182 (12%)
Query: 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN 60
M + LYYV GS P RA L +AL L +N + V+L E L+P +L+ NP H+VP L D+
Sbjct: 1 MTIDLYYVPGSAPCRAVLLTAKALNLNLNLKLVDLHHGEQLKPEYLKLNPQHTVPTLVDD 60
Query: 61 GFILWDRTSMVGPIL--YFKNDS-----PPVRSVKLCLLSLDLTVQLKQVT--FAPGETL 111
G +W+ +++ ++ Y K S P R++ L D+ ++ + F P
Sbjct: 61 GLSIWESRAIITYLVNKYAKGSSLYPEDPKARALVDQRLYFDIGTLYQRFSDYFYPQ--- 117
Query: 112 DTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTT 171
+FA +N + ++ L++KFLE Y+A ++T+AD S++ ++++
Sbjct: 118 ---------VFAGAPADKAKN-EKVQEALQLLDKFLEGQKYVAGPNLTVADLSLIASVSS 167
Query: 172 LE 173
LE
Sbjct: 168 LE 169
>pdb|1V2A|A Chain A, Glutathione S-transferase 1-6 From Anopheles Dirus Species
B
pdb|1V2A|B Chain B, Glutathione S-transferase 1-6 From Anopheles Dirus Species
B
pdb|1V2A|C Chain C, Glutathione S-transferase 1-6 From Anopheles Dirus Species
B
pdb|1V2A|D Chain D, Glutathione S-transferase 1-6 From Anopheles Dirus Species
B
Length = 210
Score = 70.5 bits (171), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 20/174 (11%)
Query: 6 YYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILW 65
YY SPP ++ L + LG+ +N + N+ + A + NP H++P L DNG ++W
Sbjct: 4 YYSLISPPCQSAILLAKKLGITLNLKKTNVHDPVE-RDALTKLNPQHTIPTLVDNGHVVW 62
Query: 66 DRTSMVGPIL--YFKNDS-----PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKF 118
+ ++V ++ Y K+D+ P VRSV + Q F TL +
Sbjct: 63 ESYAIVLYLVETYAKDDTLYPKDPKVRSV------------VNQRLFFDIGTLYKRIIDV 110
Query: 119 RILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTL 172
L KK+ +E + + + L+E+F+ + Y A DH+T+AD ++ T+T L
Sbjct: 111 IHLVMKKEQPSDEQMEKLKGALDLLEQFVTERAYAAADHLTVADICLLGTVTAL 164
>pdb|3M3M|A Chain A, Crystal Structure Of Glutathione S-Transferase From
Pseudomonas Fluorescens [pf-5]
Length = 210
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 77/174 (44%), Gaps = 23/174 (13%)
Query: 4 TLYYVHG---SPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD-D 59
+LY V+G S +L + LGL ++ V++ + AFL KNP +PVL+ +
Sbjct: 2 SLYKVYGDYRSGNCYKIKLXLNLLGLPYEWQAVDILGGDTQTEAFLAKNPNGKIPVLELE 61
Query: 60 NGFILWDRTSMVGPILYFKNDSPPVRSVKLCLLSLDLTVQ-LKQVTFAPGETLDTAFLKF 118
+G LW+ + IL F D + L + L Q +Q + P A +F
Sbjct: 62 DGTCLWESNA----ILNFLADGSQFLPSEPRLRTQVLQWQFFEQYSHEP----YIAVARF 113
Query: 119 RILFAKKKDIPEEN-------IRRTRDVYSLVEKFLEKWTYIACDHITIADFSI 165
L+ + +PEE +R + EK L + Y+ +H +IAD ++
Sbjct: 114 IQLY---EGLPEERREEYLKLHKRGYKALDVXEKQLSRTPYLVGEHYSIADIAL 164
>pdb|1BYE|A Chain A, Glutathione S-Transferase I From Mais In Complex With
Atrazine Glutathione Conjugate
pdb|1BYE|B Chain B, Glutathione S-Transferase I From Mais In Complex With
Atrazine Glutathione Conjugate
pdb|1BYE|C Chain C, Glutathione S-Transferase I From Mais In Complex With
Atrazine Glutathione Conjugate
pdb|1BYE|D Chain D, Glutathione S-Transferase I From Mais In Complex With
Atrazine Glutathione Conjugate
Length = 213
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Query: 29 NYEFV--NLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPILYFKNDSPPVRS 86
+YE V N E+ P L +NP VP L D L++ + + KN +R
Sbjct: 27 DYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFE-SRAICKYAARKNKPELLRE 85
Query: 87 VKL---CLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLV 143
L ++ + + V+ Q T A L + + + + +EN+ + + V +
Sbjct: 86 GNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVY 145
Query: 144 EKFLEKWTYIACDHITIADFSIVT 167
E L K Y+A D +++AD + V+
Sbjct: 146 EARLTKCKYLAGDFLSLADLNHVS 169
>pdb|1AXD|A Chain A, Structure Of Glutathione S-transferase-i Bound With The
Ligand Lactoylglutathione
pdb|1AXD|B Chain B, Structure Of Glutathione S-transferase-i Bound With The
Ligand Lactoylglutathione
Length = 209
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 6/144 (4%)
Query: 29 NYEFV--NLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPILYFKNDSPPVRS 86
+YE V N E+ P L +NP VP L D L++ + + KN +R
Sbjct: 27 DYEIVPINFATAEHKSPEHLVRNPFGQVPALQDGDLYLFE-SRAICKYAARKNKPELLRE 85
Query: 87 VKL---CLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLV 143
L ++ + + V+ Q T A L + + + + +EN+ + + V +
Sbjct: 86 GNLEEAAMVDVWIEVEANQYTAALNPILFQVLISPMLGGTTDQKVVDENLEKLKKVLEVY 145
Query: 144 EKFLEKWTYIACDHITIADFSIVT 167
E L K Y+A D +++AD + V+
Sbjct: 146 EARLTKCKYLAGDFLSLADLNHVS 169
>pdb|2PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|B Chain B, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|C Chain C, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|D Chain D, Glutathione Transferase From Proteus Mirabilis
pdb|1PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
Length = 203
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/173 (27%), Positives = 79/173 (45%), Gaps = 21/173 (12%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPA-FLEKNPMHSVPVLD-DN 60
+ LYY GS + + + +R GL+ + E ++L K+ FL NP VPVL DN
Sbjct: 1 MKLYYTPGSCSL-SPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVPVLQLDN 59
Query: 61 GFILWDRTSMVGPILYFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRI 120
G IL + ++V + D P R++ +L+ Q++ + F E +
Sbjct: 60 GDILTEGVAIV----QYLADLKPDRNLIAPPKALERYHQIEWLNFLASEV----HKGYSP 111
Query: 121 LFAKKKDIPE------ENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVT 167
LF+ D PE +N +++ VY + L K + DH T+AD + T
Sbjct: 112 LFSS--DTPESYLPVVKNKLKSKFVY--INDVLSKQKCVCGDHFTVADAYLFT 160
>pdb|2C3N|A Chain A, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|B Chain B, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|C Chain C, Human Glutathione-S-Transferase T1-1, Apo Form
pdb|2C3N|D Chain D, Human Glutathione-S-Transferase T1-1, Apo Form
Length = 247
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN 60
M L LY S P RA + + + V+L + ++L AF + NP+ VP L D
Sbjct: 8 MGLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDG 67
Query: 61 GFILWDRTSMVGPILYF 77
F L T V +LY
Sbjct: 68 DFTL---TESVAILLYL 81
>pdb|2C3Q|A Chain A, Human Glutathione-S-Transferase T1-1 W234r Mutant,
Complex With S-Hexylglutathione
pdb|2C3Q|B Chain B, Human Glutathione-S-Transferase T1-1 W234r Mutant,
Complex With S-Hexylglutathione
pdb|2C3Q|C Chain C, Human Glutathione-S-Transferase T1-1 W234r Mutant,
Complex With S-Hexylglutathione
pdb|2C3Q|D Chain D, Human Glutathione-S-Transferase T1-1 W234r Mutant,
Complex With S-Hexylglutathione
pdb|2C3T|A Chain A, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|B Chain B, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|C Chain C, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
pdb|2C3T|D Chain D, Human Glutathione-S-Transferase T1-1, W234r Mutant, Apo
Form
Length = 247
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN 60
M L LY S P RA + + + V+L + ++L AF + NP+ VP L D
Sbjct: 8 MGLELYLDLLSQPCRAVYIFAKKNDIPFELRIVDLIKGQHLSDAFAQVNPLKKVPALKDG 67
Query: 61 GFILWDRTSMVGPILYF 77
F L T V +LY
Sbjct: 68 DFTL---TESVAILLYL 81
>pdb|3QAV|A Chain A, Crystal Structure Of A Glutathione S-transferase From
Antarctic Clam Laternula Elliptica
pdb|3QAW|A Chain A, Crystal Structure Of A Glutathione-s-transferase From
Antarctic Clam Laternula Elliptica In A Complex With
Glutathione
Length = 243
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 72/168 (42%), Gaps = 21/168 (12%)
Query: 5 LYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFIL 64
+Y+ GSPP L ++ ++ + + ++ +KE+ LE NP VP D ++
Sbjct: 29 VYWGSGSPPCWKVLLVLQEKKIDYDEKIISFSKKEHKSEEILELNPRGQVPTFTDGDVVV 88
Query: 65 WDRTSMVGPILYFKNDSPPVRSVKLCLLSLDLTVQLK--QVTFAPGETLDTAFLKFRILF 122
+ T++ +Y + P K+ L D T++ K Q F + T ++F
Sbjct: 89 NESTAIC---MYLEEKYP-----KVPLFPSDTTIRAKVYQRMFE-TSNISTNVMEFVQYK 139
Query: 123 AKKKDIPEENIRRTRDVYSLVEKFLEKW--------TYIACDHITIAD 162
K KD ++ + + + + VE L W ++A T+AD
Sbjct: 140 MKNKDSIDQVLLKEKKDKAHVE--LGHWENYLKQTGGFVATKEFTMAD 185
>pdb|4IGJ|A Chain A, Crystal Structure Of Maleylacetoacetate Isomerase From
Anaeromyxobacter Dehalogenans 2cp-1, Target Efi-507175
pdb|4IGJ|B Chain B, Crystal Structure Of Maleylacetoacetate Isomerase From
Anaeromyxobacter Dehalogenans 2cp-1, Target Efi-507175
Length = 242
Score = 36.6 bits (83), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58
M L LY S +L + GL Y V+L +E Q A +NPM VPVL+
Sbjct: 23 MTLRLYSYWRSSSAWRVRLGLALKGLAYEYRAVDLLAQEQFQAAHQARNPMSQVPVLE 80
>pdb|4IEL|A Chain A, Crystal Structure Of A Glutathione S-Transferase Family
Protein From Burkholderia Ambifaria, Target Efi-507141,
With Bound Glutathione
pdb|4IEL|B Chain B, Crystal Structure Of A Glutathione S-Transferase Family
Protein From Burkholderia Ambifaria, Target Efi-507141,
With Bound Glutathione
Length = 229
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 43 PAFLEKNPMHSVPVLDDNGFILWDRTSMVGPILYFKNDSPPVRSVKLCLLSLDLTVQLKQ 102
PA+L NP VPV+ D+GF+LW+ ++ I Y N L ++ Q
Sbjct: 64 PAYLALNPNGLVPVIKDDGFVLWESNTI---IRYLANR---YGGDALYPAEPQARARVDQ 117
Query: 103 VTFAPGETLDTAFLKFRILFAKKK-------DIPEENIRRTRDVYSLVEKFLEKWTYIAC 155
G L+ +++ + +K I + T+ + L + ++A
Sbjct: 118 WIDWQGSDLNRSWVGAFLGLVRKSPEHQDPAAIAQSIAGWTKHMQVLNAQLEATGAFVAG 177
Query: 156 DHITIADFSI 165
DH T+AD I
Sbjct: 178 DHFTLADIPI 187
>pdb|1AW9|A Chain A, Structure Of Glutathione S-Transferase Iii In Apo Form
Length = 216
Score = 35.4 bits (80), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 9/176 (5%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGF 62
L LY + SP V + GL+ V+L + QP FL NP +P L D
Sbjct: 3 LKLYGMPLSPNVVRVATVLNEKGLDFEIVPVDLTTGAHKQPDFLALNPFGQIPALVDGDE 62
Query: 63 ILWDRTSMVGPILY-FKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRIL 121
+L++ ++ I + ++ + L++ ++++ F P + L R L
Sbjct: 63 VLFESRAINRYIASKYASEGTDLLPATASAAKLEVWLEVESHHFYPNASPLVFQLLVRPL 122
Query: 122 FAKKKDIP-----EENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTL 172
D E + + DVY E L + Y+A D T+AD + + L L
Sbjct: 123 LGGAPDAAVVDKHAEQLAKVLDVY---EAHLARNKYLAGDEFTLADANHASYLLYL 175
>pdb|4IVF|A Chain A, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|B Chain B, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|C Chain C, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|D Chain D, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|E Chain E, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|F Chain F, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|G Chain G, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
pdb|4IVF|H Chain H, Crystal Structure Of Glutathione Transferase Homolog From
Lodderomyces Elongisporus, Target Efi-501753, With Two
Gsh Per Subunit
Length = 231
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 72/180 (40%), Gaps = 14/180 (7%)
Query: 1 MALTLYYVHGSPPVRATQLCI--RALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58
MAL ++ +P ++ I LGL+ + +L + E + F++ NP +P ++
Sbjct: 3 MALKPIKLYTAPTPNGYKISIFLEVLGLDYEVQKFDLSKNETKEDWFVKLNPNGRIPTIN 62
Query: 59 DNGFILWDRT---SMVGPIL-YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTA 114
D F D S G IL Y + + + L+ + F E
Sbjct: 63 DPNFKGVDGGLVLSQTGAILQYLADTYDKEHKFSYPAGTAEYYKTLEYLIFQVAENGPIQ 122
Query: 115 FLKFRILFAKKKDIP---EENIRRTRDVYSLVEKFLEK-----WTYIACDHITIADFSIV 166
+FA K+ +P I T+ +Y + E L + Y+ D T+ADF+++
Sbjct: 123 GQANHFVFAAKEKVPYGINRYITDTKRIYGVFEDILSRNKANDSKYLVGDRYTVADFALL 182
>pdb|1LJR|A Chain A, Glutathione Transferase (Hgst T2-2) From Human
pdb|1LJR|B Chain B, Glutathione Transferase (Hgst T2-2) From Human
pdb|2LJR|A Chain A, Glutathione Transferase Apo-Form From Human
pdb|2LJR|B Chain B, Glutathione Transferase Apo-Form From Human
pdb|3LJR|A Chain A, Glutathione Transferase (Theta Class) From Human In
Complex With The Glutathione Conjugate Of 1-Menaphthyl
Sulfate
pdb|3LJR|B Chain B, Glutathione Transferase (Theta Class) From Human In
Complex With The Glutathione Conjugate Of 1-Menaphthyl
Sulfate
Length = 244
Score = 33.5 bits (75), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN 60
M L L+ S P RA + + G+ + V+L + ++ FL+ N + +P L D
Sbjct: 1 MGLELFLDLVSQPSRAVYIFAKKNGIPLELRTVDLVKGQHKSKEFLQINSLGKLPTLKDG 60
Query: 61 GFILWDRTSMV 71
FIL + ++++
Sbjct: 61 DFILTESSAIL 71
>pdb|1HQO|A Chain A, Crystal Structure Of The Nitrogen Regulation Fragment Of
The Yeast Prion Protein Ure2p
pdb|1HQO|B Chain B, Crystal Structure Of The Nitrogen Regulation Fragment Of
The Yeast Prion Protein Ure2p
Length = 258
Score = 33.1 bits (74), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 17/159 (10%)
Query: 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNG 61
TL+ +P + + LG N F++ E+ P F+ NP VP L D+G
Sbjct: 17 GYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHG 76
Query: 62 ---FILWDRTSMVGPIL--YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTA-- 114
+W+ +++ ++ Y+K P+ L S DL Q + + +T A
Sbjct: 77 XDNLSIWESGAILLHLVNKYYKETGNPL------LWSDDLADQSQINAWLFFQTSGHAPX 130
Query: 115 ---FLKFRILFAKK-KDIPEENIRRTRDVYSLVEKFLEK 149
L FR ++K E R VY +VE L +
Sbjct: 131 IGQALHFRYFHSQKIASAVERYTDEVRRVYGVVEXALAE 169
>pdb|1G6W|A Chain A, Crystal Structure Of The Globular Region Of The Prion
Protein Ure2 From The Yeast Saccaromyces Cerevisiae
pdb|1G6W|B Chain B, Crystal Structure Of The Globular Region Of The Prion
Protein Ure2 From The Yeast Saccaromyces Cerevisiae
pdb|1G6W|C Chain C, Crystal Structure Of The Globular Region Of The Prion
Protein Ure2 From The Yeast Saccaromyces Cerevisiae
pdb|1G6W|D Chain D, Crystal Structure Of The Globular Region Of The Prion
Protein Ure2 From The Yeast Saccaromyces Cerevisiae
pdb|1G6Y|A Chain A, Crystal Structure Of The Globular Region Of The Prion
Protien Ure2 From Yeast Saccharomyces Cerevisiae
pdb|1G6Y|B Chain B, Crystal Structure Of The Globular Region Of The Prion
Protien Ure2 From Yeast Saccharomyces Cerevisiae
Length = 261
Score = 33.1 bits (74), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 17/159 (10%)
Query: 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNG 61
TL+ +P + + LG N F++ E+ P F+ NP VP L D+G
Sbjct: 20 GYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHG 79
Query: 62 ---FILWDRTSMVGPIL--YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTA-- 114
+W+ +++ ++ Y+K P+ L S DL Q + + +T A
Sbjct: 80 MDNLSIWESGAILLHLVNKYYKETGNPL------LWSDDLADQSQINAWLFFQTSGHAPM 133
Query: 115 ---FLKFRILFAKK-KDIPEENIRRTRDVYSLVEKFLEK 149
L FR ++K E R VY +VE L +
Sbjct: 134 IGQALHFRYFHSQKIASAVERYTDEVRRVYGVVEMALAE 172
>pdb|1JZR|A Chain A, Ure2p In Complex With Glutathione
pdb|1JZR|B Chain B, Ure2p In Complex With Glutathione
pdb|1JZR|C Chain C, Ure2p In Complex With Glutathione
pdb|1JZR|D Chain D, Ure2p In Complex With Glutathione
pdb|1K0A|A Chain A, Ure2p In Complex With S-Hexylglutathione
pdb|1K0A|B Chain B, Ure2p In Complex With S-Hexylglutathione
pdb|1K0B|A Chain A, Ure2p In Complex With Glutathione
pdb|1K0B|B Chain B, Ure2p In Complex With Glutathione
pdb|1K0B|C Chain C, Ure2p In Complex With Glutathione
pdb|1K0B|D Chain D, Ure2p In Complex With Glutathione
pdb|1K0C|A Chain A, Ure2p In Complex With S-P-Nitrobenzylglutathione
pdb|1K0C|B Chain B, Ure2p In Complex With S-P-Nitrobenzylglutathione
pdb|1K0C|C Chain C, Ure2p In Complex With S-P-Nitrobenzylglutathione
pdb|1K0C|D Chain D, Ure2p In Complex With S-P-Nitrobenzylglutathione
pdb|1K0D|A Chain A, Ure2p In Complex With Glutathione
pdb|1K0D|B Chain B, Ure2p In Complex With Glutathione
pdb|1K0D|C Chain C, Ure2p In Complex With Glutathione
pdb|1K0D|D Chain D, Ure2p In Complex With Glutathione
Length = 260
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 64/159 (40%), Gaps = 17/159 (10%)
Query: 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNG 61
TL+ +P + + LG N F++ E+ P F+ NP VP L D+G
Sbjct: 19 GYTLFSHRSAPNGFKVAIVLSELGFHYNTIFLDFNLGEHRAPEFVSVNPNARVPALIDHG 78
Query: 62 ---FILWDRTSMVGPIL--YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTA-- 114
+W+ +++ ++ Y+K P+ L S DL Q + + +T A
Sbjct: 79 MDNLSIWESGAILLHLVNKYYKETGNPL------LWSDDLADQSQINAWLFFQTSGHAPM 132
Query: 115 ---FLKFRILFAKK-KDIPEENIRRTRDVYSLVEKFLEK 149
L FR ++K E R VY +VE L +
Sbjct: 133 IGQALHFRYFHSQKIASAVERYTDEVRRVYGVVEMALAE 171
>pdb|4ECI|A Chain A, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Acetate
pdb|4ECI|B Chain B, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Acetate
pdb|4ECJ|A Chain A, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Glutathione
pdb|4ECJ|B Chain B, Crystal Structure Of Glutathione S-Transferase Prk13972
(Target Efi- 501853) From Pseudomonas Aeruginosa Pacs2
Complexed With Glutathione
Length = 244
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 70/167 (41%), Gaps = 8/167 (4%)
Query: 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVL--- 57
M + Y +P + + +GL ++ +KE P FL NP +P +
Sbjct: 1 MVMIDLYTAATPNGHKVSIALEEMGLPYRVHALSFDKKEQKAPEFLRINPNGRIPAIVDR 60
Query: 58 DDNGFILWDRTSMVGPILYFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLK 117
D++ F +++ ++ ++Y + + + S + + Q+ G A +
Sbjct: 61 DNDDFAVFESGAI---LIYLAEKTGQLMPADVKGRSRVIQWLMFQMG-GVGPMQGQANVF 116
Query: 118 FRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFS 164
FR K + + TR +Y +++ L + Y+A D+ +IAD +
Sbjct: 117 FRYFPEKLQGAIDRYQHETRRLYEVLDGRLGEAEYLAGDY-SIADIA 162
>pdb|1GNW|A Chain A, Structure Of Glutathione S-Transferase
pdb|1GNW|B Chain B, Structure Of Glutathione S-Transferase
pdb|1BX9|A Chain A, Glutathione S-Transferase In Complex With Herbicide
Length = 211
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
Query: 8 VHGSPPVRATQLCIRALGLEVNYEF----VNLFQKENLQPAFLEKNPMHSVPVLDDNGFI 63
V G P AT+ + AL E N +F V L E+ + FL +NP VP +D
Sbjct: 5 VFGHPASIATRRVLIALH-EKNLDFELVHVELKDGEHKKEPFLSRNPFGQVPAFEDGDLK 63
Query: 64 LWDRTSMVGPILY---------FKNDSPPVRSVKLCLLSLDLTVQLKQVT-FAPGETLDT 113
L++ ++ I + + DS + + ++++ + V+ Q A +
Sbjct: 64 LFESRAITQYIAHRYENQGTNLLQTDSKNIS--QYAIMAIGMQVEDHQFDPVASKLAFEQ 121
Query: 114 AFLKFRILFAKKKDIPEENIRRTR--DVYSLVEKFLEKWTYIACDHITIADFSIVTTLTT 171
F L + + EE + + DVY E L+++ Y+A + T+ D + +
Sbjct: 122 IFKSIYGLTTDEAVVAEEEAKLAKVLDVY---EARLKEFKYLAGETFTLTDLHHIPAIQY 178
Query: 172 L 172
L
Sbjct: 179 L 179
>pdb|3ERF|A Chain A, Crystal Structure Of Gtt2 From Saccharomyces Cerevisiae
pdb|3ERG|A Chain A, Crystal Structure Of Gtt2 From Saccharomyces Cerevisiae
In Complex With Glutathione Sulfnate
pdb|3ERG|B Chain B, Crystal Structure Of Gtt2 From Saccharomyces Cerevisiae
In Complex With Glutathione Sulfnate
pdb|3IBH|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Gtt2 In
Complex With Glutathione
Length = 233
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 28 VNYEFVNLFQKENLQPAFLEKNPMHSVPVLD-DNGFILWDRTSM 70
V + +NL++ E+ +P FL KN +VPVL+ D+G ++ + T++
Sbjct: 46 VQFVRINLWKGEHKKPEFLAKNYSGTVPVLELDDGTLIAECTAI 89
>pdb|1E6B|A Chain A, Crystal Structure Of A Zeta Class Glutathione
S-Transferase From Arabidopsis Thaliana
Length = 221
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGF 62
L LY S ++ + GL+ Y VNL + + F + NPM +VP L D
Sbjct: 9 LKLYSYWRSSCAHRVRIALALKGLDYEYIPVNLLKGDQFDSDFKKINPMGTVPALVDGDV 68
Query: 63 ILWDRTSMV 71
++ D +++
Sbjct: 69 VINDSFAII 77
>pdb|3VLN|A Chain A, Human Glutathione Transferase O1-1 C32s Mutant In
Complex With Ascorbic Acid
Length = 241
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN 60
++ +Y + SP T+L ++A G + +E +N+ K N F +KNP VPVL+++
Sbjct: 23 SIRIYSMRFSPFAERTRLVLKAKG--IRHEVININLK-NKPEWFFKKNPFGLVPVLENS 78
>pdb|2V6K|A Chain A, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex
With Substrate Analogue Dicarboxyethyl Glutathione
pdb|2V6K|B Chain B, Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-s-transferase In Zeta Class, In Complex
With Substrate Analogue Dicarboxyethyl Glutathione
Length = 214
Score = 30.0 bits (66), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 25 GLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFIL 64
G+ Y V+L ++E+L+ AF NP VP LD +L
Sbjct: 25 GVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVL 64
>pdb|2JL4|A Chain A, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
pdb|2JL4|B Chain B, Holo Structure Of Maleyl Pyruvate Isomerase, A Bacterial
Glutathione-S-Transferase In Zeta Class
Length = 213
Score = 30.0 bits (66), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 25 GLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFIL 64
G+ Y V+L ++E+L+ AF NP VP LD +L
Sbjct: 24 GVPYEYLAVHLGKEEHLKDAFKALNPQQLVPALDTGAQVL 63
>pdb|3M8N|A Chain A, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
pdb|3M8N|B Chain B, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
pdb|3M8N|C Chain C, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
pdb|3M8N|D Chain D, Crystal Structure Of A Possible Gutathione S-Tranferase
From Rhodopseudomonas Palustris
Length = 225
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 11/138 (7%)
Query: 33 VNLFQKENLQPAFLEKNPMHSVPVLDDN-GFILWDRTSMVGPILYFKNDSPPVRSVKLCL 91
V++ + E+ P FL KNP VP+L+ G L + +++ + + +P R +
Sbjct: 34 VDILRGESRTPDFLAKNPSGQVPLLETAPGRYLAESNAILWYLAVGTSLAPDTRXDRAEA 93
Query: 92 LSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIP----EENIRRTRDVYSLVEKFL 147
L +Q P + +A+ + L +D+ E+ + R + E L
Sbjct: 94 LQWXF---FEQHALEP--NIGSAYF-WLCLVKGGRDLQTHALEDWLERGYAALQVXENHL 147
Query: 148 EKWTYIACDHITIADFSI 165
+ Y A +TIAD ++
Sbjct: 148 KTNDYFAAGQLTIADIAL 165
>pdb|1EEM|A Chain A, Glutathione Transferase From Homo Sapiens
Length = 241
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN 60
++ +Y + P T+L ++A G + +E +N+ K N F +KNP VPVL+++
Sbjct: 23 SIRIYSMRFCPFAERTRLVLKAKG--IRHEVININLK-NKPEWFFKKNPFGLVPVLENS 78
>pdb|3LFL|A Chain A, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|B Chain B, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
pdb|3LFL|C Chain C, Crystal Structure Of Human Glutathione Transferase Omega
1, Delta 155
Length = 240
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query: 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN 60
++ +Y + P T+L ++A G + +E +N+ K N F +KNP VPVL+++
Sbjct: 23 SIRIYSMRFCPFAERTRLVLKAKG--IRHEVININLK-NKPEWFFKKNPFGLVPVLENS 78
>pdb|1KU1|A Chain A, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
pdb|1KU1|B Chain B, Crystal Structure Of The Sec7 Domain Of Yeast Gea2
Length = 230
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 10/113 (8%)
Query: 44 AFLEKNPMHSVPVLDDNGFILWDRTSMVGPILYFKNDSPPVRSVKLCLLSLD----LTVQ 99
AF EK P +P+L + GFI D + L+ N+ +++ L L D L
Sbjct: 33 AFNEK-PKKGIPMLIEKGFIASDSDKDIAEFLFNNNNRMNKKTIGLLLCHPDKVSLLNEY 91
Query: 100 LKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTY 152
++ F+ G +D A RIL K + +P E+ + R + + + E Y
Sbjct: 92 IRLFDFS-GLRVDEA---IRILLTKFR-LPGESQQIERIIEAFSSAYCENQDY 139
>pdb|4GWN|A Chain A, Crystal Structure Of Human Mature Meprin Beta
Length = 553
Score = 28.1 bits (61), Expect = 2.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 59 DNGFILWDRTSMVGPILYFKNDS 81
DNG WDR S VG + F N +
Sbjct: 466 DNGNYFWDRPSKVGTVALFSNGT 488
>pdb|4GWM|A Chain A, Crystal Structure Of Human Promeprin Beta
pdb|4GWM|B Chain B, Crystal Structure Of Human Promeprin Beta
Length = 592
Score = 28.1 bits (61), Expect = 2.4, Method: Composition-based stats.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 59 DNGFILWDRTSMVGPILYFKNDS 81
DNG WDR S VG + F N +
Sbjct: 505 DNGNYFWDRPSKVGTVALFSNGT 527
>pdb|2UZX|B Chain B, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|D Chain D, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|B Chain B, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|D Chain D, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
Length = 727
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 13 PVRATQLCIRALGLEV----NYEFVNLFQKENLQPAFLEKNPMHSVPVL----DDNGFIL 64
P + + ALG +V F+N F + ++ +P+HS+ V +GF+
Sbjct: 148 PSQCPDCVVSALGAKVLSSVKDRFINFFVGNTINSSYFPDHPLHSISVRRLKETKDGFMF 207
Query: 65 WDRTSMVGPILYFKNDSPPVRSV 87
S + + F+ DS P++ V
Sbjct: 208 LTDQSYIDVLPEFR-DSYPIKYV 229
>pdb|1SHY|B Chain B, The Crystal Structure Of Hgf Beta-Chain In Complex With
The Sema Domain Of The Met Receptor
Length = 551
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 13 PVRATQLCIRALGLEV----NYEFVNLFQKENLQPAFLEKNPMHSVPVL----DDNGFIL 64
P + + ALG +V F+N F + ++ +P+HS+ V +GF+
Sbjct: 145 PSQCPDCVVSALGAKVLSSVKDRFINFFVGNTINSSYFPDHPLHSISVRRLKETKDGFMF 204
Query: 65 WDRTSMVGPILYFKNDSPPVRSV 87
S + + F+ DS P++ V
Sbjct: 205 LTDQSYIDVLPEFR-DSYPIKYV 226
>pdb|2UVV|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
pdb|2UVW|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
Length = 358
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 279 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 335
Query: 136 TRDVYSLVEKFLE 148
R++ KF+E
Sbjct: 336 IREIGVRFSKFIE 348
>pdb|3LYP|A Chain A, Structure Of Stringent Starvation Protein A Homolog From
Pseudomonas Fluorescens
pdb|3LYP|B Chain B, Structure Of Stringent Starvation Protein A Homolog From
Pseudomonas Fluorescens
Length = 215
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 43 PAFLEKNPMHSVPVLDDNGFILWDRT 68
P +E NP S+P L D LW+ T
Sbjct: 46 PKLIEVNPYGSLPTLVDRDLALWEST 71
>pdb|3BBY|A Chain A, Crystal Structure Of Glutathione S-Transferase
(Np_416804.1) From Escherichia Coli K12 At 1.85 A
Resolution
Length = 215
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 11 SPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSM 70
SP V + + ++ GL + + ++L E+LQP + VP+L + F L + +++
Sbjct: 17 SPYVLSAWVALQEKGLSFHIKTIDLDSGEHLQPTWQGYGQTRRVPLLQIDDFELSESSAI 76
Query: 71 VGPILYFKNDSPPVRSVKLCLLSLDLTVQLKQV 103
Y ++ P ++ L L+ + +Q+
Sbjct: 77 AE---YLEDRFAPPTWERIYPLDLENRARARQI 106
>pdb|3V6K|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6K|J Chain J, Replication Of N2,3-Ethenoguanine By Dna Polymerases
Length = 347
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 278 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 334
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 335 IRRIGVRFSKFIE 347
>pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4
Length = 361
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 274 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 330
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 331 IRRIGVRFSKFIE 343
>pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4W|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4X|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #2
Length = 361
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 274 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 330
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 331 IRRIGVRFSKFIE 343
>pdb|2ASD|A Chain A, Oxog-Modified Insertion Ternary Complex
pdb|2ASD|B Chain B, Oxog-Modified Insertion Ternary Complex
pdb|2ASJ|A Chain A, Oxog-Modified Preinsertion Binary Complex
pdb|2ASJ|B Chain B, Oxog-Modified Preinsertion Binary Complex
pdb|2ASL|A Chain A, Oxog-Modified Postinsertion Binary Complex
pdb|2ASL|B Chain B, Oxog-Modified Postinsertion Binary Complex
pdb|2ATL|A Chain A, Unmodified Insertion Ternary Complex
pdb|2ATL|B Chain B, Unmodified Insertion Ternary Complex
pdb|2AU0|A Chain A, Unmodified Preinsertion Binary Complex
pdb|2AU0|B Chain B, Unmodified Preinsertion Binary Complex
Length = 360
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 281 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 337
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 338 IRRIGVRFSKFIE 350
>pdb|3QZ7|A Chain A, T-3 Ternary Complex Of Dpo4
pdb|3QZ8|A Chain A, Tt-4 Ternary Complex Of Dpo4
Length = 360
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 273 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 329
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 330 IRRIGVRFSKFIE 342
>pdb|2BQ3|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BQR|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BQU|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2BR0|A Chain A, Dna Adduct Bypass Polymerization By Sulfolobus
Solfataricus Dpo4. Analysis And Crystal Structures Of
Multiple Base- Pair Substitution And Frameshift Products
With The Adduct 1,N2-Ethenoguanine
pdb|2C22|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C28|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2D|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2E|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2C2R|A Chain A, Efficient And High Fidelity Incorporation Of Dctp Opposite
7,8-Dihydro-8-Oxodeoxyguanosine By Sulfolobus
Solfataricus Dna Polymerase Dpo4
pdb|2J6S|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-Methylguanine Modified Dna, And Datp.
pdb|2J6T|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-Methylguanine Modified Dna, And Datp.
pdb|2J6U|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, O6-methylguanine Modified Dna, And Dgtp.
pdb|2JEF|A Chain A, The Molecular Basis Of Selectivity Of Nucleotide
Triphosphate Incorporation Opposite O6-benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-state
And Pre-steady-state And X-ray Crystallography Of
Correct And Incorrect Pairing
pdb|2JEG|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-Benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-State
And Pre-Steady-State Kinetics And X-Ray Crystallography
Of Correct And Incorrect Pairing
pdb|2JEI|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-state
And Pre-steady-state Kinetics And X-ray Crystallography
Of Correct And Incorrect Pairing
pdb|2JEJ|A Chain A, The Molecular Basis Of Selectivity Of Nucleoside
Triphosphate Incorporation Opposite O6-Benzylguanine By
Sulfolobus Solfataricus Dna Polymerase Iv: Steady-State
And Pre-Steady-State Kinetics And X-Ray Crystallography
Of Correct And Incorrect Pairing
pdb|2V9W|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2V9W|B Chain B, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA2|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA2|B Chain B, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2VA3|A Chain A, Complex Structure Of Sulfolobus Solfataricus Dpo4 And Dna
Duplex Containing A Hydrophobic Thymine Isostere 2,4-
Difluorotoluene Nucleotide In The Template Strand
pdb|2W8K|A Chain A, Y-Family Dna Polymerase Dpo4 Bypassing N2-Naphthyl-Guanine
Adduct In Syn Orientation
pdb|2W8L|A Chain A, Y-Family Dna Polymerase Dpo4 Bypassing N2-Naphthyl-Guanine
Adduct In Anti Orientation
pdb|2W9A|A Chain A, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dgtp
pdb|2W9B|B Chain B, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna
pdb|2W9C|B Chain B, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dttp
pdb|2V4Q|A Chain A, Post-Insertion Complex Of The Y-Family Dna Polymerase Dpo4
With M1dg Containing Template Dna
pdb|2V4R|A Chain A, Non-Productive Complex Of The Y-Family Dna Polymerase Dpo4
With Dgtp Skipping The M1dg Adduct To Pair With The Next
Template Cytosine
pdb|2XC9|A Chain A, Binary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase And 1,N2-Ethenoguanine Modified Dna,
Magnesium Form
pdb|2XCA|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dgtp - Magnesium Form
pdb|2XCP|A Chain A, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dctp - Magnesium Form
pdb|2XCP|B Chain B, Ternary Complex Of Sulfolobus Solfataricus Dpo4 Dna
Polymerase, 7,8-Dihydro-8-Oxodeoxyguanine Modified Dna
And Dctp - Magnesium Form
pdb|4GC6|A Chain A, Crystal Structure Of Dpo4 In Complex With N-mc-damp
Opposite Dt
Length = 358
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 279 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 335
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 336 IRRIGVRFSKFIE 348
>pdb|1JXL|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
pdb|1N48|A Chain A, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1N56|A Chain A, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1N56|B Chain B, Y-Family Dna Polymerase Dpo4 In Complex With Dna
Containing Abasic Lesion
pdb|1RYR|A Chain A, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1RYS|A Chain A, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1RYS|B Chain B, Replication Of A Cis-Syn Thymine Dimer At Atomic
Resolution
pdb|1S0M|A Chain A, Crystal Structure Of A Benzo[a]pyrene Diol Epoxide Adduct
In A Ternary Complex With A Dna Polymerase
pdb|1S0M|B Chain B, Crystal Structure Of A Benzo[a]pyrene Diol Epoxide Adduct
In A Ternary Complex With A Dna Polymerase
pdb|1S0N|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S0O|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S0O|B Chain B, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S10|A Chain A, Snapshots Of Replication Through An Abasic Lesion:
Structural Basis For Base Substitution And Frameshift
pdb|1S97|A Chain A, Dpo4 With Gt Mismatch
pdb|1S97|B Chain B, Dpo4 With Gt Mismatch
pdb|1S97|C Chain C, Dpo4 With Gt Mismatch
pdb|1S97|D Chain D, Dpo4 With Gt Mismatch
pdb|1S9F|A Chain A, Dpo With At Matched
pdb|1S9F|B Chain B, Dpo With At Matched
pdb|1S9F|C Chain C, Dpo With At Matched
pdb|1S9F|D Chain D, Dpo With At Matched
pdb|2IA6|A Chain A, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2IA6|B Chain B, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2IBK|A Chain A, Bypass Of Major Benzopyrene-Dg Adduct By Y-Family Dna
Polymerase With Unique Structural Gap
pdb|2RDJ|A Chain A, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
pdb|2RDJ|B Chain B, Snapshots Of A Y-family Dna Polymerase In Replication:
Dpo4 In Apo And Binary/ternary Complex Forms
pdb|2R8G|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2-Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|2R8H|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2- Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|2R8I|A Chain A, Selectivity Of Nucleoside Triphosphate Incorporation
Opposite 1,N2-Propanodeoxyguanosine (Pdg) By The
Sulfolobus Solfataricus Dna Polymerase Dpo4 Polymerase
pdb|3FDS|A Chain A, Structural Insight Into Recruitment Of Translesion Dna
Polymerase Dpo4 To Sliding Clamp Pcna
pdb|3M9M|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
pdb|3M9N|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
pdb|3M9O|B Chain B, Crystal Structure Of Dpo4 In Complex With Dna Containing
The Major Cisplatin Lesion
Length = 352
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 273 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 329
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 330 IRRIGVRFSKFIE 342
>pdb|4GC7|A Chain A, Crystal Structure Of Dpo4 In Complex With S-mc-dadp
Opposite Dt
pdb|4GC7|B Chain B, Crystal Structure Of Dpo4 In Complex With S-mc-dadp
Opposite Dt
Length = 359
Score = 26.2 bits (56), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 280 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 336
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 337 IRRIGVRFSKFIE 349
>pdb|3V6H|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6H|B Chain B, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6J|A Chain A, Replication Of N2,3-Ethenoguanine By Dna Polymerases
pdb|3V6J|J Chain J, Replication Of N2,3-Ethenoguanine By Dna Polymerases
Length = 348
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 279 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 335
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 336 IRRIGVRFSKFIE 348
>pdb|2W9B|A Chain A, Binary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna
pdb|2W9C|A Chain A, Ternary Complex Of Dpo4 Bound To N2,N2-Dimethyl-
Deoxyguanosine Modified Dna With Incoming Dttp
Length = 358
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 279 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 335
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 336 IRRIGVRFSKFIE 348
>pdb|2IMW|P Chain P, Mechanism Of Template-Independent Nucleotide Incorporation
Catalyzed By A Template-Dependent Dna Polymerase
Length = 348
Score = 26.2 bits (56), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 273 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 329
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 330 IRRIGVRFSKFIE 342
>pdb|2UVR|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
pdb|2UVU|A Chain A, Crystal Structures Of Mutant Dpo4 Dna Polymerases With 8-
Oxog Containing Dna Template-Primer Constructs
Length = 358
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 279 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 335
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 336 IRAIGVRFSKFIE 348
>pdb|1JX4|A Chain A, Crystal Structure Of A Y-Family Dna Polymerase In A
Ternary Complex With Dna Substrates And An Incoming
Nucleotide
Length = 352
Score = 26.2 bits (56), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 76 YFKNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRR 135
Y+K D +++ + ++ DL + + TF G + +TA+ + L K I EE+ R+
Sbjct: 273 YYKLDKRIPKAIHVVAVTEDLDIVSRGRTFPHGISKETAYSESVKLLQK---ILEEDERK 329
Query: 136 TRDVYSLVEKFLE 148
R + KF+E
Sbjct: 330 IRRIGVRFSKFIE 342
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,794,311
Number of Sequences: 62578
Number of extensions: 177985
Number of successful extensions: 629
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 552
Number of HSP's gapped (non-prelim): 90
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)