Query psy13750
Match_columns 173
No_of_seqs 130 out of 1218
Neff 10.1
Searched_HMMs 46136
Date Fri Aug 16 19:33:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13750.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13750hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09481 sspA stringent starva 100.0 1.8E-32 3.9E-37 197.0 11.0 152 2-171 10-167 (211)
2 PLN02473 glutathione S-transfe 100.0 4.3E-32 9.3E-37 195.4 12.5 158 1-170 1-174 (214)
3 PRK13972 GSH-dependent disulfi 100.0 1.4E-31 3.1E-36 192.9 10.3 156 2-170 1-171 (215)
4 PLN02395 glutathione S-transfe 100.0 1.1E-30 2.3E-35 188.3 12.2 157 1-170 1-173 (215)
5 PRK15113 glutathione S-transfe 100.0 1.2E-30 2.5E-35 188.0 12.2 157 2-171 5-177 (214)
6 COG0625 Gst Glutathione S-tran 100.0 6.8E-30 1.5E-34 183.6 11.6 156 3-171 1-171 (211)
7 PRK11752 putative S-transferas 100.0 2.1E-29 4.5E-34 186.5 11.6 156 2-170 44-217 (264)
8 KOG0867|consensus 100.0 2.6E-29 5.7E-34 181.8 10.6 160 1-172 1-174 (226)
9 PRK10542 glutathionine S-trans 100.0 3.9E-29 8.4E-34 178.4 10.4 154 3-171 1-164 (201)
10 TIGR01262 maiA maleylacetoacet 100.0 7.5E-29 1.6E-33 178.0 11.0 156 4-171 1-171 (210)
11 KOG0406|consensus 100.0 2.3E-28 5E-33 173.4 11.6 152 3-171 10-170 (231)
12 KOG0868|consensus 100.0 1.8E-28 3.9E-33 164.7 8.8 156 3-170 6-173 (217)
13 PRK10357 putative glutathione 99.9 3.9E-27 8.5E-32 168.2 10.9 152 3-170 1-163 (202)
14 PRK10387 glutaredoxin 2; Provi 99.9 3.5E-27 7.6E-32 169.3 10.2 165 3-172 1-182 (210)
15 PLN02378 glutathione S-transfe 99.9 3.1E-26 6.7E-31 164.8 10.5 139 7-171 16-160 (213)
16 TIGR00862 O-ClC intracellular 99.9 7.3E-26 1.6E-30 163.9 9.9 142 9-172 17-182 (236)
17 PTZ00057 glutathione s-transfe 99.9 9.9E-26 2.1E-30 161.3 8.0 154 3-171 5-165 (205)
18 TIGR02182 GRXB Glutaredoxin, G 99.9 3.4E-25 7.4E-30 158.9 10.8 164 4-172 1-181 (209)
19 PLN02817 glutathione dehydroge 99.9 7.6E-25 1.7E-29 161.7 10.9 137 9-171 71-212 (265)
20 KOG1695|consensus 99.9 1.1E-23 2.4E-28 148.5 9.2 157 1-172 1-166 (206)
21 KOG4420|consensus 99.9 8.2E-24 1.8E-28 150.1 4.9 73 3-75 27-99 (325)
22 cd03052 GST_N_GDAP1 GST_N fami 99.9 1.5E-22 3.3E-27 121.5 7.0 73 3-75 1-73 (73)
23 cd03045 GST_N_Delta_Epsilon GS 99.9 1.8E-21 3.8E-26 117.4 6.8 73 3-75 1-73 (74)
24 cd03056 GST_N_4 GST_N family, 99.8 3.5E-21 7.7E-26 115.7 7.0 73 3-75 1-73 (73)
25 cd03053 GST_N_Phi GST_N family 99.8 7.5E-21 1.6E-25 115.2 7.2 74 2-75 1-74 (76)
26 cd03047 GST_N_2 GST_N family, 99.8 1.1E-20 2.3E-25 113.7 6.9 73 3-75 1-73 (73)
27 cd03050 GST_N_Theta GST_N fami 99.8 1.4E-20 2.9E-25 114.1 6.9 73 3-75 1-73 (76)
28 cd03048 GST_N_Ure2p_like GST_N 99.8 1.3E-20 2.9E-25 115.5 6.9 75 2-77 1-80 (81)
29 cd03051 GST_N_GTT2_like GST_N 99.8 1.2E-20 2.5E-25 113.7 6.3 73 3-75 1-74 (74)
30 cd03042 GST_N_Zeta GST_N famil 99.8 2.6E-20 5.7E-25 111.9 6.9 73 3-75 1-73 (73)
31 cd03041 GST_N_2GST_N GST_N fam 99.8 1.7E-20 3.7E-25 113.9 5.8 72 2-75 1-74 (77)
32 PF13417 GST_N_3: Glutathione 99.8 2.8E-20 6.1E-25 112.4 6.5 71 5-78 1-73 (75)
33 cd03076 GST_N_Pi GST_N family, 99.8 2.3E-20 5.1E-25 112.1 5.2 71 2-75 1-71 (73)
34 PF02798 GST_N: Glutathione S- 99.8 4.2E-20 9.1E-25 111.8 5.9 73 1-75 1-75 (76)
35 cd03044 GST_N_EF1Bgamma GST_N 99.8 5.9E-20 1.3E-24 111.0 6.3 72 3-75 1-73 (75)
36 cd03058 GST_N_Tau GST_N family 99.8 7.6E-20 1.7E-24 110.2 6.4 70 3-75 1-71 (74)
37 cd03059 GST_N_SspA GST_N famil 99.8 8.9E-20 1.9E-24 109.6 6.6 70 3-75 1-70 (73)
38 cd03057 GST_N_Beta GST_N famil 99.8 2.1E-19 4.5E-24 109.1 6.3 72 3-75 1-73 (77)
39 cd03046 GST_N_GTT1_like GST_N 99.8 2.5E-19 5.5E-24 108.4 6.6 72 3-75 1-72 (76)
40 cd03060 GST_N_Omega_like GST_N 99.8 2.9E-19 6.2E-24 106.8 6.6 68 4-74 2-70 (71)
41 cd03039 GST_N_Sigma_like GST_N 99.8 1.3E-19 2.8E-24 108.6 5.1 71 3-75 1-71 (72)
42 cd03061 GST_N_CLIC GST_N famil 99.8 2.9E-19 6.2E-24 110.5 6.0 67 9-78 20-88 (91)
43 PLN02907 glutamate-tRNA ligase 99.8 1.1E-18 2.4E-23 143.4 10.7 122 1-170 1-129 (722)
44 cd03055 GST_N_Omega GST_N fami 99.8 6.4E-19 1.4E-23 109.8 6.9 71 2-75 18-89 (89)
45 cd03049 GST_N_3 GST_N family, 99.8 6.4E-19 1.4E-23 105.9 6.5 70 3-75 1-73 (73)
46 cd03037 GST_N_GRX2 GST_N famil 99.8 7.3E-19 1.6E-23 105.0 5.8 69 3-75 1-70 (71)
47 cd03075 GST_N_Mu GST_N family, 99.8 1.2E-18 2.6E-23 106.9 6.0 72 4-75 2-79 (82)
48 KOG1422|consensus 99.7 8.4E-18 1.8E-22 116.4 7.4 139 10-172 20-167 (221)
49 cd03043 GST_N_1 GST_N family, 99.7 1.2E-17 2.7E-22 100.2 7.0 69 6-75 5-73 (73)
50 cd03038 GST_N_etherase_LigE GS 99.7 4.2E-18 9.1E-23 105.1 5.0 66 9-75 14-80 (84)
51 cd03080 GST_N_Metaxin_like GST 99.7 8.2E-18 1.8E-22 101.5 5.7 64 2-75 1-71 (75)
52 PF13409 GST_N_2: Glutathione 99.7 7.4E-18 1.6E-22 100.3 5.4 66 10-75 1-68 (70)
53 cd03077 GST_N_Alpha GST_N fami 99.7 1.8E-17 3.9E-22 101.0 6.0 67 3-75 2-73 (79)
54 cd00570 GST_N_family Glutathio 99.7 2.9E-17 6.3E-22 97.3 6.5 71 3-75 1-71 (71)
55 cd03040 GST_N_mPGES2 GST_N fam 99.7 3.7E-17 8.1E-22 99.1 6.0 69 2-75 1-73 (77)
56 KOG3029|consensus 99.7 3.4E-16 7.3E-21 112.8 10.7 166 3-173 91-331 (370)
57 KOG4244|consensus 99.7 1.1E-16 2.3E-21 114.6 7.4 159 3-172 46-244 (281)
58 cd03054 GST_N_Metaxin GST_N fa 99.6 5.9E-16 1.3E-20 92.6 5.6 63 3-75 1-70 (72)
59 COG2999 GrxB Glutaredoxin 2 [P 99.6 4.1E-15 8.8E-20 100.5 5.8 164 3-172 1-182 (215)
60 cd03079 GST_N_Metaxin2 GST_N f 99.4 2.6E-13 5.6E-18 80.8 5.1 58 9-75 15-72 (74)
61 COG0435 ECM4 Predicted glutath 99.3 3.7E-12 8E-17 92.0 6.5 157 3-173 52-247 (324)
62 TIGR02190 GlrX-dom Glutaredoxi 99.3 1.1E-11 2.5E-16 75.3 6.0 72 1-75 8-79 (79)
63 KOG3027|consensus 99.3 4E-11 8.6E-16 83.2 8.1 155 9-172 32-218 (257)
64 KOG2903|consensus 99.2 2.2E-11 4.7E-16 87.4 5.4 157 3-173 38-247 (319)
65 cd03078 GST_N_Metaxin1_like GS 99.2 5.8E-11 1.3E-15 70.9 5.5 56 10-75 15-70 (73)
66 PRK10638 glutaredoxin 3; Provi 99.2 6.1E-11 1.3E-15 72.7 5.7 71 1-73 1-72 (83)
67 cd03029 GRX_hybridPRX5 Glutare 99.1 3.9E-10 8.5E-15 67.2 6.4 71 2-75 2-72 (72)
68 cd03177 GST_C_Delta_Epsilon GS 99.1 5.5E-10 1.2E-14 72.9 6.2 75 84-171 2-78 (118)
69 cd03196 GST_C_5 GST_C family, 99.0 4.2E-10 9.2E-15 73.3 5.3 76 81-170 3-80 (115)
70 cd03189 GST_C_GTT1_like GST_C 99.0 3.4E-10 7.3E-15 74.0 4.1 78 81-170 4-93 (119)
71 PRK10329 glutaredoxin-like pro 99.0 2.1E-09 4.5E-14 65.5 7.1 61 1-64 1-61 (81)
72 cd03190 GST_C_ECM4_like GST_C 99.0 4.5E-10 9.8E-15 75.8 4.4 75 83-171 3-77 (142)
73 cd03188 GST_C_Beta GST_C famil 99.0 3.5E-10 7.6E-15 73.2 3.1 76 84-171 2-83 (114)
74 KOG3028|consensus 99.0 7.4E-09 1.6E-13 76.4 10.1 151 10-171 16-203 (313)
75 cd03027 GRX_DEP Glutaredoxin ( 98.9 3.4E-09 7.4E-14 63.3 6.3 65 3-69 3-67 (73)
76 cd03179 GST_C_1 GST_C family, 98.9 4.9E-10 1.1E-14 71.4 2.7 77 84-172 2-84 (105)
77 cd03186 GST_C_SspA GST_N famil 98.9 1.4E-09 2.9E-14 69.8 4.6 74 82-170 1-74 (107)
78 TIGR02196 GlrX_YruB Glutaredox 98.9 2.5E-09 5.5E-14 63.5 5.3 71 2-74 1-73 (74)
79 cd03178 GST_C_Ure2p_like GST_C 98.9 1.1E-09 2.4E-14 70.8 3.9 76 84-171 1-80 (113)
80 cd03180 GST_C_2 GST_C family, 98.9 5E-09 1.1E-13 67.2 6.9 75 84-170 2-82 (110)
81 cd02066 GRX_family Glutaredoxi 98.9 3.6E-09 7.9E-14 62.4 5.7 70 2-73 1-70 (72)
82 COG0695 GrxC Glutaredoxin and 98.9 5.1E-09 1.1E-13 63.6 6.1 66 1-67 1-67 (80)
83 cd03182 GST_C_GTT2_like GST_C 98.9 1.1E-09 2.3E-14 71.3 2.9 78 82-171 2-89 (117)
84 cd02976 NrdH NrdH-redoxin (Nrd 98.9 8.6E-09 1.9E-13 61.1 6.5 64 2-67 1-64 (73)
85 cd03185 GST_C_Tau GST_C family 98.9 1.9E-09 4.1E-14 71.0 3.9 75 82-171 1-75 (126)
86 cd03187 GST_C_Phi GST_C family 98.9 3.1E-09 6.8E-14 69.1 4.7 76 84-171 2-85 (118)
87 PF13410 GST_C_2: Glutathione 98.9 2.6E-09 5.7E-14 63.0 3.5 44 129-172 4-47 (69)
88 cd03181 GST_C_EFB1gamma GST_C 98.8 4.5E-09 9.8E-14 69.0 4.4 76 84-171 1-80 (123)
89 cd03191 GST_C_Zeta GST_C famil 98.8 4.7E-09 1E-13 68.7 4.3 77 82-170 1-85 (121)
90 cd03418 GRX_GRXb_1_3_like Glut 98.8 1.9E-08 4.2E-13 60.2 5.6 70 2-73 1-71 (75)
91 cd03200 GST_C_JTV1 GST_C famil 98.7 1.1E-08 2.4E-13 64.4 3.6 62 80-170 13-74 (96)
92 cd03184 GST_C_Omega GST_C fami 98.7 2.3E-08 5E-13 65.9 4.8 71 84-171 2-74 (124)
93 cd03206 GST_C_7 GST_C family, 98.7 1.3E-08 2.8E-13 64.5 3.4 43 128-170 30-72 (100)
94 TIGR02200 GlrX_actino Glutared 98.7 7.1E-08 1.5E-12 57.9 6.1 65 2-68 1-67 (77)
95 cd03195 GST_C_4 GST_C family, 98.7 3.2E-08 7E-13 64.3 4.5 77 82-171 1-82 (114)
96 TIGR02194 GlrX_NrdH Glutaredox 98.6 1.4E-07 3E-12 56.1 5.9 57 3-62 1-57 (72)
97 PF00462 Glutaredoxin: Glutare 98.6 1.1E-07 2.3E-12 54.5 5.2 60 3-64 1-60 (60)
98 TIGR02181 GRX_bact Glutaredoxi 98.6 9.3E-08 2E-12 57.9 5.0 69 3-73 1-69 (79)
99 cd03193 GST_C_Metaxin GST_C fa 98.6 4.5E-08 9.8E-13 60.5 3.6 41 131-171 19-59 (88)
100 cd03207 GST_C_8 GST_C family, 98.6 3.3E-08 7.2E-13 62.8 3.0 45 127-171 26-70 (103)
101 cd03183 GST_C_Theta GST_C fami 98.6 4.2E-08 9.1E-13 64.7 3.4 41 130-170 44-85 (126)
102 PRK11200 grxA glutaredoxin 1; 98.6 1.3E-07 2.8E-12 58.1 5.0 73 1-75 1-80 (85)
103 PF00043 GST_C: Glutathione S- 98.6 5.5E-08 1.2E-12 60.8 3.3 44 128-171 25-68 (95)
104 cd00299 GST_C_family Glutathio 98.6 2.4E-08 5.2E-13 62.6 1.6 46 127-172 32-77 (100)
105 cd03198 GST_C_CLIC GST_C famil 98.6 1.2E-07 2.5E-12 63.1 4.7 48 123-170 21-84 (134)
106 TIGR02189 GlrX-like_plant Glut 98.5 2.6E-07 5.6E-12 58.5 5.7 71 2-72 9-80 (99)
107 cd03211 GST_C_Metaxin2 GST_C f 98.5 1E-07 2.2E-12 63.0 3.6 46 126-171 52-97 (126)
108 PF14497 GST_C_3: Glutathione 98.5 7E-08 1.5E-12 61.0 2.7 45 127-171 31-77 (99)
109 cd03419 GRX_GRXh_1_2_like Glut 98.5 2.5E-07 5.4E-12 56.3 5.0 74 2-75 1-75 (82)
110 cd03192 GST_C_Sigma_like GST_C 98.5 9.6E-08 2.1E-12 60.8 2.6 44 128-171 36-81 (104)
111 cd03202 GST_C_etherase_LigE GS 98.4 3.2E-07 7E-12 60.4 4.2 44 127-170 54-97 (124)
112 PHA03050 glutaredoxin; Provisi 98.4 8.2E-07 1.8E-11 57.0 5.9 69 3-71 15-87 (108)
113 cd03204 GST_C_GDAP1 GST_C fami 98.4 2.3E-07 4.9E-12 59.8 3.0 47 125-171 23-79 (111)
114 TIGR02183 GRXA Glutaredoxin, G 98.3 1.3E-06 2.7E-11 53.9 5.0 71 3-75 2-79 (86)
115 cd03212 GST_C_Metaxin1_3 GST_C 98.3 7E-07 1.5E-11 59.9 3.6 43 128-170 61-103 (137)
116 cd03201 GST_C_DHAR GST_C famil 98.3 6.7E-07 1.5E-11 58.7 3.4 42 130-171 29-71 (121)
117 cd03209 GST_C_Mu GST_C family, 98.3 7.9E-07 1.7E-11 58.2 3.6 44 128-171 32-75 (121)
118 cd03203 GST_C_Lambda GST_C fam 98.3 1.7E-06 3.8E-11 56.6 5.1 68 82-171 2-72 (120)
119 cd03210 GST_C_Pi GST_C family, 98.3 7.5E-07 1.6E-11 58.8 2.9 41 130-170 34-77 (126)
120 PF10568 Tom37: Outer mitochon 98.3 2.1E-06 4.5E-11 50.9 4.4 56 10-75 13-72 (72)
121 TIGR00365 monothiol glutaredox 98.2 5.9E-06 1.3E-10 52.0 5.5 68 3-72 14-86 (97)
122 cd03208 GST_C_Alpha GST_C fami 98.2 2E-06 4.3E-11 57.7 3.4 39 133-171 41-81 (137)
123 TIGR02180 GRX_euk Glutaredoxin 98.2 5.1E-06 1.1E-10 50.5 4.9 72 3-74 1-75 (84)
124 cd03028 GRX_PICOT_like Glutare 98.1 7.7E-06 1.7E-10 50.8 5.5 69 2-72 9-82 (90)
125 cd03194 GST_C_3 GST_C family, 98.1 4.7E-06 1E-10 54.0 4.0 44 127-171 37-83 (114)
126 PRK12759 bifunctional gluaredo 97.8 9.2E-05 2E-09 58.5 7.1 69 1-72 1-79 (410)
127 PF14834 GST_C_4: Glutathione 97.7 4.6E-05 1E-09 48.6 3.9 78 82-172 2-84 (117)
128 cd03197 GST_C_mPGES2 GST_C fam 97.7 5.6E-05 1.2E-09 51.0 4.4 43 130-172 78-121 (149)
129 cd03205 GST_C_6 GST_C family, 97.7 2E-05 4.4E-10 49.5 2.1 42 126-170 32-73 (98)
130 cd03031 GRX_GRX_like Glutaredo 97.7 0.00011 2.3E-09 49.8 5.4 69 3-73 2-80 (147)
131 PRK10824 glutaredoxin-4; Provi 97.4 0.00043 9.4E-09 44.8 5.1 63 9-73 28-90 (115)
132 cd02973 TRX_GRX_like Thioredox 97.3 0.0021 4.5E-08 37.2 6.8 58 2-65 2-64 (67)
133 PRK01655 spxA transcriptional 97.2 0.00056 1.2E-08 45.5 4.1 32 3-34 2-33 (131)
134 COG1393 ArsC Arsenate reductas 97.2 0.00061 1.3E-08 44.3 4.1 34 1-34 1-34 (117)
135 cd03032 ArsC_Spx Arsenate Redu 97.2 0.00076 1.7E-08 43.7 4.3 32 3-34 2-33 (115)
136 cd03036 ArsC_like Arsenate Red 97.2 0.00064 1.4E-08 43.8 3.8 32 3-34 1-32 (111)
137 PTZ00062 glutaredoxin; Provisi 97.2 0.0013 2.8E-08 47.0 5.7 62 9-72 126-187 (204)
138 KOG1752|consensus 97.2 0.0015 3.3E-08 41.5 5.4 71 3-73 16-87 (104)
139 cd02977 ArsC_family Arsenate R 97.0 0.00098 2.1E-08 42.4 3.9 32 3-34 1-32 (105)
140 PRK13344 spxA transcriptional 97.0 0.0016 3.5E-08 43.3 4.4 32 3-34 2-33 (132)
141 PRK12559 transcriptional regul 96.9 0.002 4.3E-08 42.8 4.2 32 3-34 2-33 (131)
142 TIGR00412 redox_disulf_2 small 96.7 0.017 3.7E-07 34.4 7.3 56 1-64 1-60 (76)
143 TIGR01617 arsC_related transcr 96.7 0.0029 6.2E-08 41.2 4.0 32 3-34 1-32 (117)
144 PRK10026 arsenate reductase; P 96.7 0.0033 7.1E-08 42.2 4.2 34 1-34 1-35 (141)
145 cd03035 ArsC_Yffb Arsenate Red 96.5 0.0047 1E-07 39.4 3.9 32 3-34 1-32 (105)
146 PF05768 DUF836: Glutaredoxin- 96.5 0.012 2.6E-07 35.5 5.5 55 2-61 1-57 (81)
147 PRK10853 putative reductase; P 96.5 0.0054 1.2E-07 40.0 4.1 32 3-34 2-33 (118)
148 cd03033 ArsC_15kD Arsenate Red 96.4 0.0053 1.1E-07 39.7 3.9 32 3-34 2-33 (113)
149 cd03030 GRX_SH3BGR Glutaredoxi 96.3 0.017 3.7E-07 35.9 5.5 66 3-70 2-77 (92)
150 COG4545 Glutaredoxin-related p 96.2 0.021 4.6E-07 33.6 5.1 63 3-65 4-77 (85)
151 TIGR01616 nitro_assoc nitrogen 96.1 0.011 2.4E-07 38.9 4.0 33 2-34 2-34 (126)
152 PF04908 SH3BGR: SH3-binding, 95.7 0.037 8.1E-07 34.8 5.1 64 1-66 1-79 (99)
153 PF13192 Thioredoxin_3: Thiore 95.6 0.12 2.7E-06 30.6 6.9 58 1-66 1-62 (76)
154 cd03034 ArsC_ArsC Arsenate Red 95.5 0.025 5.3E-07 36.5 3.9 32 3-34 1-32 (112)
155 TIGR00014 arsC arsenate reduct 95.5 0.025 5.4E-07 36.6 3.9 32 3-34 1-32 (114)
156 KOG1147|consensus 95.4 0.039 8.5E-07 44.7 5.4 79 60-171 44-128 (712)
157 PHA02125 thioredoxin-like prot 95.4 0.099 2.1E-06 30.9 6.0 51 3-59 2-52 (75)
158 PF11801 Tom37_C: Tom37 C-term 95.3 0.022 4.7E-07 39.5 3.3 38 134-171 111-152 (168)
159 COG0278 Glutaredoxin-related p 95.3 0.027 5.8E-07 35.2 3.3 66 7-74 26-92 (105)
160 TIGR00411 redox_disulf_1 small 95.1 0.18 3.8E-06 29.9 6.6 57 2-62 2-62 (82)
161 cd03026 AhpF_NTD_C TRX-GRX-lik 94.6 0.27 5.8E-06 30.2 6.6 57 3-65 16-77 (89)
162 cd01659 TRX_superfamily Thiore 93.8 0.23 5E-06 26.9 4.8 53 3-58 1-58 (69)
163 PF04399 Glutaredoxin2_C: Glut 93.2 0.14 3E-06 34.1 3.5 42 130-172 58-99 (132)
164 PF03960 ArsC: ArsC family; I 91.3 0.31 6.8E-06 31.1 3.4 29 6-34 1-29 (110)
165 PF11287 DUF3088: Protein of u 91.0 0.18 3.9E-06 32.2 2.0 66 10-78 23-109 (112)
166 cd03199 GST_C_GRX2 GST_C famil 89.1 0.84 1.8E-05 30.1 4.0 42 130-172 59-100 (128)
167 PF09635 MetRS-N: MetRS-N bind 87.7 0.42 9.1E-06 31.1 1.8 50 14-79 12-65 (122)
168 PRK15317 alkyl hydroperoxide r 84.8 1.4 3E-05 36.2 4.0 64 3-67 120-183 (517)
169 TIGR03140 AhpF alkyl hydropero 83.3 1.6 3.5E-05 35.8 3.8 65 3-68 121-185 (515)
170 TIGR03143 AhpF_homolog putativ 80.5 7.8 0.00017 32.2 6.8 57 3-65 480-541 (555)
171 KOG0911|consensus 78.4 3.4 7.4E-05 30.0 3.5 64 8-73 151-214 (227)
172 COG3019 Predicted metal-bindin 78.1 4.9 0.00011 26.9 3.9 32 3-34 28-59 (149)
173 PHA03075 glutaredoxin-like pro 77.1 4.6 0.0001 26.1 3.5 48 3-59 5-52 (123)
174 cd02953 DsbDgamma DsbD gamma f 74.9 11 0.00024 23.3 5.0 55 3-58 15-77 (104)
175 cd02989 Phd_like_TxnDC9 Phosdu 74.1 20 0.00043 22.8 6.4 60 3-66 26-90 (113)
176 cd02975 PfPDO_like_N Pyrococcu 68.8 20 0.00043 22.8 5.1 49 6-58 29-80 (113)
177 cd02947 TRX_family TRX family; 67.5 22 0.00047 20.6 7.2 54 3-62 14-74 (93)
178 cd02949 TRX_NTR TRX domain, no 64.6 29 0.00064 21.1 6.9 58 3-64 17-80 (97)
179 cd02984 TRX_PICOT TRX domain, 63.7 30 0.00064 20.8 6.1 57 3-63 18-80 (97)
180 TIGR01295 PedC_BrcD bacterioci 62.9 39 0.00084 21.9 7.9 32 3-34 27-62 (122)
181 COG5515 Uncharacterized conser 61.6 8.2 0.00018 21.8 1.9 23 1-23 1-27 (70)
182 COG5494 Predicted thioredoxin/ 60.4 37 0.0008 24.7 5.4 58 1-63 11-69 (265)
183 KOG2824|consensus 59.1 11 0.00024 28.3 2.8 59 13-73 149-211 (281)
184 PF11823 DUF3343: Protein of u 58.8 23 0.00049 20.6 3.7 33 1-33 1-33 (73)
185 TIGR02187 GlrX_arch Glutaredox 56.2 42 0.00091 24.0 5.5 53 3-59 137-192 (215)
186 PF00085 Thioredoxin: Thioredo 54.1 46 0.001 19.9 7.1 58 3-65 21-85 (103)
187 PF01323 DSBA: DSBA-like thior 50.9 35 0.00076 23.5 4.3 35 2-36 1-40 (193)
188 PF04134 DUF393: Protein of un 49.6 14 0.00031 23.3 1.9 70 5-75 1-75 (114)
189 cd02963 TRX_DnaJ TRX domain, D 47.1 70 0.0015 20.0 6.7 57 3-63 28-91 (111)
190 PHA02278 thioredoxin-like prot 47.1 70 0.0015 20.0 7.3 62 3-64 18-85 (103)
191 cd02956 ybbN ybbN protein fami 46.8 58 0.0012 19.5 4.4 57 3-63 16-78 (96)
192 cd02997 PDI_a_PDIR PDIa family 43.4 73 0.0016 19.2 4.5 54 3-58 21-80 (104)
193 cd02948 TRX_NDPK TRX domain, T 42.9 57 0.0012 20.1 3.9 57 3-64 21-84 (102)
194 PF09413 DUF2007: Domain of un 42.4 30 0.00066 19.5 2.4 29 4-32 2-30 (67)
195 cd03025 DsbA_FrnE_like DsbA fa 41.6 70 0.0015 22.0 4.7 35 1-35 1-41 (193)
196 cd02957 Phd_like Phosducin (Ph 39.2 74 0.0016 20.0 4.1 58 3-65 28-90 (113)
197 cd03020 DsbA_DsbC_DsbG DsbA fa 38.8 49 0.0011 23.2 3.5 21 3-23 81-101 (197)
198 cd04911 ACT_AKiii-YclM-BS_1 AC 37.4 43 0.00093 19.9 2.5 22 11-32 15-36 (76)
199 TIGR02187 GlrX_arch Glutaredox 36.9 1.6E+02 0.0034 21.1 7.0 57 3-63 23-89 (215)
200 PRK11657 dsbG disulfide isomer 35.7 63 0.0014 23.9 3.8 20 3-22 121-140 (251)
201 PRK09266 hypothetical protein; 34.2 37 0.00079 25.2 2.3 56 20-75 200-255 (266)
202 PF12062 HSNSD: heparan sulfat 34.2 82 0.0018 25.8 4.3 44 3-61 63-106 (487)
203 cd02959 ERp19 Endoplasmic reti 34.1 1.3E+02 0.0028 19.2 5.9 21 3-23 23-43 (117)
204 PRK10877 protein disulfide iso 34.0 1.3E+02 0.0029 21.9 5.2 21 3-23 111-131 (232)
205 PTZ00051 thioredoxin; Provisio 33.6 1.1E+02 0.0023 18.3 6.8 57 3-63 22-83 (98)
206 cd02972 DsbA_family DsbA famil 33.6 81 0.0017 18.3 3.5 22 3-24 1-22 (98)
207 COG3150 Predicted esterase [Ge 32.0 99 0.0022 21.8 3.9 33 3-35 3-35 (191)
208 COG1102 Cmk Cytidylate kinase 31.3 70 0.0015 22.4 3.1 28 1-28 1-28 (179)
209 TIGR02681 phage_pRha phage reg 30.2 28 0.00062 22.2 1.0 22 54-75 2-24 (108)
210 cd02978 KaiB_like KaiB-like fa 30.2 1.2E+02 0.0026 17.8 4.0 52 3-58 4-60 (72)
211 cd02994 PDI_a_TMX PDIa family, 29.0 85 0.0018 18.9 3.1 52 3-58 20-76 (101)
212 PF13098 Thioredoxin_2: Thiore 28.1 70 0.0015 19.7 2.6 20 3-22 9-28 (112)
213 PF00731 AIRC: AIR carboxylase 28.1 1.1E+02 0.0025 20.8 3.7 25 10-34 12-36 (150)
214 cd02993 PDI_a_APS_reductase PD 26.8 1.6E+02 0.0035 18.2 4.1 53 3-58 25-83 (109)
215 TIGR03759 conj_TIGR03759 integ 26.5 1.4E+02 0.0029 21.5 3.9 45 14-58 148-192 (200)
216 cd02995 PDI_a_PDI_a'_C PDIa fa 26.4 62 0.0013 19.5 2.1 21 3-23 22-42 (104)
217 PF13728 TraF: F plasmid trans 25.5 2.6E+02 0.0057 20.2 6.8 32 3-34 124-159 (215)
218 cd03021 DsbA_GSTK DsbA family, 25.1 1.3E+02 0.0028 21.3 3.8 33 3-35 3-39 (209)
219 cd02951 SoxW SoxW family; SoxW 25.1 1.9E+02 0.0041 18.3 5.4 16 3-18 18-33 (125)
220 cd02987 Phd_like_Phd Phosducin 24.9 2.2E+02 0.0048 19.7 4.8 57 4-65 88-149 (175)
221 cd02999 PDI_a_ERp44_like PDIa 24.5 1.2E+02 0.0026 18.6 3.1 53 3-58 22-77 (100)
222 cd02962 TMX2 TMX2 family; comp 24.0 2.4E+02 0.0052 19.1 6.9 59 3-65 51-122 (152)
223 TIGR01162 purE phosphoribosyla 23.6 1E+02 0.0023 21.1 2.9 25 11-35 11-35 (156)
224 cd03024 DsbA_FrnE DsbA family, 23.5 1.3E+02 0.0028 20.9 3.6 33 3-35 1-41 (201)
225 cd02966 TlpA_like_family TlpA- 23.5 97 0.0021 18.5 2.6 20 4-23 24-43 (116)
226 TIGR01764 excise DNA binding d 23.0 56 0.0012 16.5 1.2 24 51-74 24-47 (49)
227 cd02965 HyaE HyaE family; HyaE 22.9 2.2E+02 0.0047 18.3 4.3 59 4-66 32-98 (111)
228 cd03004 PDI_a_ERdj5_C PDIa fam 22.7 1.9E+02 0.0041 17.5 4.8 52 3-58 23-78 (104)
229 cd03003 PDI_a_ERdj5_N PDIa fam 22.6 1.9E+02 0.0041 17.4 6.0 52 3-58 22-77 (101)
230 cd02992 PDI_a_QSOX PDIa family 22.2 2E+02 0.0043 18.1 3.9 20 3-22 23-42 (114)
231 cd03022 DsbA_HCCA_Iso DsbA fam 21.9 1.5E+02 0.0033 20.2 3.6 32 3-34 1-36 (192)
232 COG3011 Predicted thiol-disulf 21.8 2.6E+02 0.0057 18.8 5.5 71 3-75 10-84 (137)
233 TIGR00096 probable S-adenosylm 21.8 2.4E+02 0.0053 21.4 4.8 21 14-34 34-54 (276)
234 PRK09381 trxA thioredoxin; Pro 21.7 2.1E+02 0.0044 17.5 7.1 58 3-64 25-88 (109)
235 cd02955 SSP411 TRX domain, SSP 21.5 2.4E+02 0.0053 18.3 6.2 64 4-67 20-97 (124)
236 PRK03600 nrdI ribonucleotide r 20.9 85 0.0018 20.8 2.0 24 1-27 1-24 (134)
237 KOG2501|consensus 20.7 2.5E+02 0.0054 19.4 4.2 39 9-47 43-88 (157)
238 COG0041 PurE Phosphoribosylcar 20.6 1.9E+02 0.0041 19.9 3.6 30 12-45 16-45 (162)
239 cd03002 PDI_a_MPD1_like PDI fa 20.5 2.1E+02 0.0046 17.3 4.2 54 3-58 22-79 (109)
No 1
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=1.8e-32 Score=197.04 Aligned_cols=152 Identities=14% Similarity=0.207 Sum_probs=123.6
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccCC
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFKN 79 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~~ 79 (173)
+++||+++.||+|++++++|+++|++|+.+.+++ ++++++|+++||.|+||+|++||.+|+||.||++||+ |+..
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~---~~~~~~~~~~nP~g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~ 86 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEK---DNLPQDLIDLNPYQSVPTLVDRELTLYESRIIMEYLDERFPHP 86 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCc---ccCCHHHHHhCCCCCCCEEEECCEEeeCHHHHHHHHHHhCCCC
Confidence 3799999999999999999999999999999985 3567899999999999999999999999999999999 6543
Q ss_pred ----CCchhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccCCceecc
Q psy13750 80 ----DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIAC 155 (173)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 155 (173)
.++.+++++++|+.+.. + .+... . .....+.+...+.....+.+.+..+|++|++++|++|
T Consensus 87 ~l~p~~~~~ra~~~~~~~~~~-----------~-~~~~~--~-~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G 151 (211)
T PRK09481 87 PLMPVYPVARGESRLMMHRIE-----------K-DWYSL--M-NKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMS 151 (211)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-----------H-HHHHH--H-HHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccC
Confidence 34678889999988765 3 22221 1 1111122233455677888999999999999999999
Q ss_pred CCCchhhhhhhhhhcc
Q psy13750 156 DHITIADFSIVTTLTT 171 (173)
Q Consensus 156 ~~~T~aD~~~~~~l~~ 171 (173)
+++|+||+++++.+..
T Consensus 152 ~~~t~AD~~l~~~~~~ 167 (211)
T PRK09481 152 EEFSLVDCYLAPLLWR 167 (211)
T ss_pred CCccHHHHHHHHHHHH
Confidence 9999999999988754
No 2
>PLN02473 glutathione S-transferase
Probab=99.98 E-value=4.3e-32 Score=195.42 Aligned_cols=158 Identities=18% Similarity=0.271 Sum_probs=127.6
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccC
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFK 78 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~ 78 (173)
|.++||+++.|++++|++++|+++|++|+.+.++...+++.+++++++||.|+||+|++||.+|+||.+|++||+ ++.
T Consensus 1 ~~~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~YL~~~~~~ 80 (214)
T PLN02473 1 MVVKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPFGQVPAIEDGDLKLFESRAIARYYATKYAD 80 (214)
T ss_pred CceEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCCCCCCeEEECCEEEEehHHHHHHHHHHcCC
Confidence 789999999999999999999999999999999988777889999999999999999999999999999999999 653
Q ss_pred C------CCchhhHHHHHHHhhcccccceecccCCCCccChh---HHHHHhhhc--cC---CCCCHHHHHHHHHHHHHHH
Q psy13750 79 N------DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTA---FLKFRILFA--KK---KDIPEENIRRTRDVYSLVE 144 (173)
Q Consensus 79 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~---~~~~~~~~~~~~~~l~~le 144 (173)
. .++.+++++++|+++.. + .+.+. ......... +. ....+....++.+.++.||
T Consensus 81 ~~~~l~p~~~~~ra~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 148 (214)
T PLN02473 81 QGTDLLGKTLEHRAIVDQWVEVEN-----------N-YFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYE 148 (214)
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHH-----------h-cccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHH
Confidence 1 24678999999998877 3 33321 000111110 11 1223445678899999999
Q ss_pred hhccCCceeccCCCchhhhhhhhhhc
Q psy13750 145 KFLEKWTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 145 ~~L~~~~~l~G~~~T~aD~~~~~~l~ 170 (173)
++|++++|++|+++|+||+++++.+.
T Consensus 149 ~~L~~~~~l~Gd~~t~ADi~~~~~~~ 174 (214)
T PLN02473 149 NRLATNRYLGGDEFTLADLTHMPGMR 174 (214)
T ss_pred HHhccCCcccCCCCCHHHHHHHHHHH
Confidence 99998899999999999999888764
No 3
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=99.97 E-value=1.4e-31 Score=192.89 Aligned_cols=156 Identities=19% Similarity=0.257 Sum_probs=121.8
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEee-----CC--eEeeccccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDD-----NG--FILWDRTSMVGPI 74 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-----~g--~~l~eS~~I~~yl 74 (173)
|++||+.+ +++|++|+++|+++|++|+.+.+++..++++.++|+++||.|+||+|++ || .+|+||.||++||
T Consensus 1 m~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 1 MIDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred CeEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcCCCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 37999887 7999999999999999999999998777778899999999999999986 45 5799999999999
Q ss_pred c--ccC--CCCchhhHHHHHHHhhcccccceecccCCCCccChhH-H---HHHhhhccCCCCCHHHHHHHHHHHHHHHhh
Q psy13750 75 L--YFK--NDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAF-L---KFRILFAKKKDIPEENIRRTRDVYSLVEKF 146 (173)
Q Consensus 75 ~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 146 (173)
+ ++. +.++.+++++++|+.|.. + .+.+.. . +........+...+....++.+.+..||++
T Consensus 80 ~~~~~~l~p~~~~~ra~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 147 (215)
T PRK13972 80 AEKTGLFLSHETRERAATLQWLFWQV-----------G-GLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKR 147 (215)
T ss_pred HHhcCCCCCCCHHHHHHHHHHHHHHh-----------h-ccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9 643 234788999999999876 3 222200 0 000000011122344567788999999999
Q ss_pred ccCCceeccCCCchhhhhhhhhhc
Q psy13750 147 LEKWTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 147 L~~~~~l~G~~~T~aD~~~~~~l~ 170 (173)
|++++|++|+++|+||+++++.+.
T Consensus 148 L~~~~~l~Gd~~t~ADi~l~~~~~ 171 (215)
T PRK13972 148 LENSPWLGGENYSIADIACWPWVN 171 (215)
T ss_pred hccCccccCCCCCHHHHHHHHHHH
Confidence 998999999999999999987653
No 4
>PLN02395 glutathione S-transferase
Probab=99.97 E-value=1.1e-30 Score=188.26 Aligned_cols=157 Identities=20% Similarity=0.310 Sum_probs=124.4
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccC
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFK 78 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~ 78 (173)
|+++||+.+. ++++|++++|.++|++|+.+.++..++++.+++|++.||.|+||+|+++|.+|+||.+|++||+ |+.
T Consensus 1 ~~~~ly~~~~-~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~ES~aI~~YL~~~~~~ 79 (215)
T PLN02395 1 MVLKVYGPAF-ASPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRS 79 (215)
T ss_pred CeEEEEcCCc-CcHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHHHHcCC
Confidence 8899999766 5689999999999999999999987777888999999999999999999999999999999999 653
Q ss_pred C------CCchhhHHHHHHHhhcccccceecccCCCCccCh--hHHHHHhh----hc--cCCCCCHHHHHHHHHHHHHHH
Q psy13750 79 N------DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDT--AFLKFRIL----FA--KKKDIPEENIRRTRDVYSLVE 144 (173)
Q Consensus 79 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~----~~--~~~~~~~~~~~~~~~~l~~le 144 (173)
. .++.+++++++|+++.. . .+.+ ........ .. ..+...+....++.+.++.||
T Consensus 80 ~~~~l~p~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 147 (215)
T PLN02395 80 QGPDLLGKTIEERGQVEQWLDVEA-----------T-SYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYE 147 (215)
T ss_pred CCcCcCCCChhHHHHHHHHHHHHH-----------H-hcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 1 24678999999999876 3 3322 11111110 00 111123455778889999999
Q ss_pred hhccCCceeccCCCchhhhhhhhhhc
Q psy13750 145 KFLEKWTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 145 ~~L~~~~~l~G~~~T~aD~~~~~~l~ 170 (173)
++|++++|++|+++|+||+++++++.
T Consensus 148 ~~L~~~~~l~G~~~s~ADi~l~~~~~ 173 (215)
T PLN02395 148 ARLSKSKYLAGDFVSLADLAHLPFTE 173 (215)
T ss_pred HHhcCCccccCCCcCHHHHHHHHHHH
Confidence 99998999999999999999988764
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=99.97 E-value=1.2e-30 Score=188.01 Aligned_cols=157 Identities=20% Similarity=0.234 Sum_probs=125.7
Q ss_pred ceEEeccC--CChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--cc
Q psy13750 2 ALTLYYVH--GSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YF 77 (173)
Q Consensus 2 ~~~Ly~~~--~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~ 77 (173)
|++||+++ .|++|++++++|.++|++|+.+.+++..+++..++|++.||.|+||+|++||.+|+||.+|++||+ |+
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~g~VP~L~~~~~~l~ES~aI~~YL~~~~~ 84 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFA 84 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCCCCCCEEEECCEEEecHHHHHHHHHHHcC
Confidence 37999976 799999999999999999999999988777788999999999999999999999999999999999 65
Q ss_pred CC-------CCchhhHHHHHHHhhcccccceecccCCCCccChhH---HHHHhhh-ccCCCCCHHHHHHHHHHHHHHHhh
Q psy13750 78 KN-------DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAF---LKFRILF-AKKKDIPEENIRRTRDVYSLVEKF 146 (173)
Q Consensus 78 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~ 146 (173)
.. .++.+++++++|+.|.. + .+.+.. ....... .......+....++.+.++.+|++
T Consensus 85 ~~~~~~l~p~~~~~ra~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~ 152 (214)
T PRK15113 85 PPAWERIYPADLQARARARQIQAWLR-----------S-DLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERL 152 (214)
T ss_pred CCCccccCCCCHHHHHHHHHHHHHHH-----------h-hhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHH
Confidence 42 24678999999999886 2 222100 0000011 122344567788899999999999
Q ss_pred ccC-CceeccCCCchhhhhhhhhhcc
Q psy13750 147 LEK-WTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 147 L~~-~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
|++ ++|++|+ +|+||+++++.+..
T Consensus 153 L~~~~~~l~G~-~TlADi~l~~~l~~ 177 (214)
T PRK15113 153 LAPGQPNLFGE-WCIADTDLALMLNR 177 (214)
T ss_pred HhcCCCEeeCC-ccHHHHHHHHHHHH
Confidence 975 5799996 99999999988754
No 6
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-30 Score=183.63 Aligned_cols=156 Identities=27% Similarity=0.366 Sum_probs=125.9
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCe-Eeecccccccccc--ccCC
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGF-ILWDRTSMVGPIL--YFKN 79 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~-~l~eS~~I~~yl~--~~~~ 79 (173)
++||+.+.||+|+|+++++.++|++|+.+.|++.. ++..++|+..||.|+||+|++++. +|+||.+|++||+ |+..
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~-~~~~~~~~~~nP~gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCccc-ccCCHHHHhcCCCCCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 57999999999999999999999999999999877 778899999999999999997665 8999999999999 7653
Q ss_pred ----CCc---hhhHHHHHHHhhcccccceecccCCCCccChhHHH-HHhhhcc----CCCCCHHHHHHHHHHHHHHHhhc
Q psy13750 80 ----DSP---PVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLK-FRILFAK----KKDIPEENIRRTRDVYSLVEKFL 147 (173)
Q Consensus 80 ----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L 147 (173)
.++ .+++...+|..+.. + .+.+.... ....... .....+.....+.+.+..+|+.|
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 147 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAA-----------S-DLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALL 147 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHH-----------h-cccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence 223 37888889999886 5 55551111 1111111 12334566788999999999999
Q ss_pred cCCceeccCCCchhhhhhhhhhcc
Q psy13750 148 EKWTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 148 ~~~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
++++|++|+++|+||+.+++.+..
T Consensus 148 ~~~~~l~G~~~tiAD~~~~~~~~~ 171 (211)
T COG0625 148 ADGPYLAGDRFTIADIALAPLLWR 171 (211)
T ss_pred ccCCcccCCCCCHHHHHHHHHHHH
Confidence 999999999999999999988764
No 7
>PRK11752 putative S-transferase; Provisional
Probab=99.96 E-value=2.1e-29 Score=186.49 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=121.7
Q ss_pred ceEEeccCCChhHHHHHHHHHHc------CCceeEEecccCCCCCCchHHHhhCCCCccceEeeC----CeEeecccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRAL------GLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN----GFILWDRTSMV 71 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~------gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~----g~~l~eS~~I~ 71 (173)
|++||+.+ ||+|+||+++|+++ |++|+.+.|++..+++..++|+++||.|+||+|+++ |.+|+||.+|+
T Consensus 44 ~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~GkVP~Lv~~dg~~~~~L~ES~AIl 122 (264)
T PRK11752 44 PLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAIL 122 (264)
T ss_pred CeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCCCCCCEEEeCCCCCCeEEEcHHHHH
Confidence 58999976 89999999999997 999999999987777788999999999999999964 36899999999
Q ss_pred cccc--ccCC--CCchhhHHHHHHHhhcccccceecccCCCCccChh-HHHHHhhh--cc-CCCCCHHHHHHHHHHHHHH
Q psy13750 72 GPIL--YFKN--DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTA-FLKFRILF--AK-KKDIPEENIRRTRDVYSLV 143 (173)
Q Consensus 72 ~yl~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~l 143 (173)
+||+ |++. .++.+++++++|+.|.. + ..... ..+..... .. .+...+....++.+.|+.|
T Consensus 123 ~YL~~~~~~L~P~~~~era~v~~wl~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l 190 (264)
T PRK11752 123 LYLAEKFGAFLPKDLAARTETLNWLFWQQ-----------G-SAPFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVL 190 (264)
T ss_pred HHHHHhcCCcCCCCHHHHHHHHHHHHHHh-----------h-hhhHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHH
Confidence 9999 6532 34778999999999876 3 22110 00111111 11 1112344566788999999
Q ss_pred HhhccCCceeccCCCchhhhhhhhhhc
Q psy13750 144 EKFLEKWTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 144 e~~L~~~~~l~G~~~T~aD~~~~~~l~ 170 (173)
|++|++++|++|+++|+|||++++++.
T Consensus 191 e~~L~~~~fl~Gd~~TlADi~l~~~l~ 217 (264)
T PRK11752 191 DKQLAEHEYIAGDEYTIADIAIWPWYG 217 (264)
T ss_pred HHHhccCCCCCCCccCHHHHHHHHHHH
Confidence 999998999999999999999987653
No 8
>KOG0867|consensus
Probab=99.96 E-value=2.6e-29 Score=181.83 Aligned_cols=160 Identities=31% Similarity=0.502 Sum_probs=136.8
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccC
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFK 78 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~ 78 (173)
|+++||+++.|+.|+++.+++.++|++|+.+.+++..+++++++|+++||.|+||+|+|+|..++||.||+.||. |..
T Consensus 1 ~~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 1 MKLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPLGKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CCceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcCCCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999 761
Q ss_pred C------CCchhhHHHHHHHhhcccccceecccCCCCccChh----HHHHH-hhhcc-CCCCCHHHHHHHHHHHHHHHhh
Q psy13750 79 N------DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTA----FLKFR-ILFAK-KKDIPEENIRRTRDVYSLVEKF 146 (173)
Q Consensus 79 ~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~-~~~~~~~~~~~~~~~l~~le~~ 146 (173)
. .+..+++.+++|+.|.+ + .+.+. ..+.+ ..... ..........++++.+..+|++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~-----------~-~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 148 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFEN-----------G-VLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERF 148 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhh-----------c-ccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHH
Confidence 1 23678999999999888 4 44331 11222 11111 3456688899999999999999
Q ss_pred ccCCceeccCCCchhhhhhhhhhccc
Q psy13750 147 LEKWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 147 L~~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
|.++.|++|+++|+||+.+.+.+..+
T Consensus 149 l~~~~yl~g~~~tlADl~~~~~~~~~ 174 (226)
T KOG0867|consen 149 LKTQVYLAGDQLTLADLSLASTLSQF 174 (226)
T ss_pred HccCCcccCCcccHHHHHHhhHHHHH
Confidence 99999999999999999999987664
No 9
>PRK10542 glutathionine S-transferase; Provisional
Probab=99.96 E-value=3.9e-29 Score=178.38 Aligned_cols=154 Identities=20% Similarity=0.252 Sum_probs=120.6
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCC-CCchHHHhhCCCCccceEe-eCCeEeecccccccccc--ccC
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKE-NLQPAFLEKNPMHSVPVLD-DNGFILWDRTSMVGPIL--YFK 78 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~~I~~yl~--~~~ 78 (173)
|+||+.+.| ++++++++|+++|++|+.+.+++.+++ +..++|+++||.|+||+|+ +||.+|+||.+|++||+ ++.
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~g~vPvL~~~~g~~l~eS~aI~~YL~~~~~~ 79 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPKGQVPALLLDDGTLLTEGVAIMQYLADSVPD 79 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcCCCCCeEEeCCCcEeecHHHHHHHHHHhCcc
Confidence 579998875 799999999999999999999886553 4568999999999999998 68899999999999999 653
Q ss_pred C-----CCchhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccC-CCCCHHHHHHHHHHHHHHHhhccCCce
Q psy13750 79 N-----DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKK-KDIPEENIRRTRDVYSLVEKFLEKWTY 152 (173)
Q Consensus 79 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~ 152 (173)
. .++.+++++++|+.+.. + .+.+. +.+...... +...+.....+.+.++.+|++|++++|
T Consensus 80 ~~l~~p~~~~~ra~~~~~~~~~~-----------~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~ 145 (201)
T PRK10542 80 RQLLAPVGSLSRYHTIEWLNYIA-----------T-ELHKG--FTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQW 145 (201)
T ss_pred cccCCCCCcHHHHHHHHHHHHHH-----------h-hhhhh--hhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 2 23678899999998876 3 33221 111111111 112244567899999999999999999
Q ss_pred eccCCCchhhhhhhhhhcc
Q psy13750 153 IACDHITIADFSIVTTLTT 171 (173)
Q Consensus 153 l~G~~~T~aD~~~~~~l~~ 171 (173)
++|+++|+||+++++.+..
T Consensus 146 l~G~~~s~ADi~l~~~~~~ 164 (201)
T PRK10542 146 ICGQRFTIADAYLFTVLRW 164 (201)
T ss_pred eeCCCCcHHhHHHHHHHHH
Confidence 9999999999999987754
No 10
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=99.96 E-value=7.5e-29 Score=178.00 Aligned_cols=156 Identities=21% Similarity=0.253 Sum_probs=119.8
Q ss_pred EEeccCCChhHHHHHHHHHHcCCceeEEecccCC-CCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccCC-
Q psy13750 4 TLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQ-KENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFKN- 79 (173)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~~- 79 (173)
+||+++.||+++++|++|+++|++|+.+.++... ++++.+++++.||.|+||+|++||.+|+||.+|++||+ ++..
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~~ 80 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPP 80 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCCCcCCEEEECCEEeecHHHHHHHHHHhCCCCC
Confidence 4899999999999999999999999999998632 35567889999999999999999999999999999999 6532
Q ss_pred ---CCchhhHHHHHHHhhcccccceecccCCCCccChh-H-HHHHhhhc----cCCCCCHHHHHHHHHHHHHHHhhccC-
Q psy13750 80 ---DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTA-F-LKFRILFA----KKKDIPEENIRRTRDVYSLVEKFLEK- 149 (173)
Q Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~----~~~~~~~~~~~~~~~~l~~le~~L~~- 149 (173)
.++.+++++++|+++.. + .+.+. . ........ ......+...+.+.+.++.||++|++
T Consensus 81 l~p~~~~~~a~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~ 148 (210)
T TIGR01262 81 LLPADPIKRARVRALALLIA-----------C-DIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPH 148 (210)
T ss_pred CCCCCHHHHHHHHHHHHHHh-----------c-ccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34678999999998775 3 32220 0 01101111 11112233456789999999999986
Q ss_pred -CceeccCCCchhhhhhhhhhcc
Q psy13750 150 -WTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 150 -~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
++|++|+++|+||+++++.+..
T Consensus 149 ~~~~l~G~~~T~ADi~~~~~l~~ 171 (210)
T TIGR01262 149 AGAFCVGDTPTLADLCLVPQVYN 171 (210)
T ss_pred CCCEeeCCCCCHHHHHHHHHHHH
Confidence 4699999999999999988753
No 11
>KOG0406|consensus
Probab=99.96 E-value=2.3e-28 Score=173.36 Aligned_cols=152 Identities=20% Similarity=0.190 Sum_probs=127.6
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhC-CCCccceEeeCCeEeecccccccccc--ccC-
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKN-PMHSVPVLDDNGFILWDRTSMVGPIL--YFK- 78 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~- 78 (173)
++||++..|||++|++++|++|||+|+.+++|+. ++++++++.| +.++||||+++|.++.||..|++||+ ++.
T Consensus 10 vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~---~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~ 86 (231)
T KOG0406|consen 10 VKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLT---NKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSG 86 (231)
T ss_pred EEEEEeecChHHHHHHHHHHhcCCceEEEecCCC---CCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCC
Confidence 7899999999999999999999999999999874 3788999999 68999999999999999999999999 774
Q ss_pred C----CCchhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhcc-CCcee
Q psy13750 79 N----DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLE-KWTYI 153 (173)
Q Consensus 79 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l 153 (173)
+ .++.+|++++.|.++.+ . ..... ..........+..+...+.+...|+.||+.|. +++|+
T Consensus 87 ~~iLP~DPy~Ra~arfwa~~id-----------~-~~~~~--~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~f 152 (231)
T KOG0406|consen 87 PPILPSDPYERAQARFWAEYID-----------K-KVFFV--GRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFF 152 (231)
T ss_pred CCCCCCCHHHHHHHHHHHHHHH-----------h-HHHHH--HHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2 46899999999999988 4 33221 11111113335667788999999999999998 78999
Q ss_pred ccCCCchhhhhhhhhhcc
Q psy13750 154 ACDHITIADFSIVTTLTT 171 (173)
Q Consensus 154 ~G~~~T~aD~~~~~~l~~ 171 (173)
.|++++++|+++++.+.+
T Consensus 153 gG~~~G~vDi~~~p~~~~ 170 (231)
T KOG0406|consen 153 GGETIGFVDIAIGPSFER 170 (231)
T ss_pred CCCCcCHhhhhHHhhHHH
Confidence 999999999999977654
No 12
>KOG0868|consensus
Probab=99.95 E-value=1.8e-28 Score=164.74 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=126.2
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCC-CCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccCC
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKE-NLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFKN 79 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~~ 79 (173)
..||.+.-|.+++|||++|..|||+|+.+.|++..++ +...+|++.||.++||.|++||.+++||.||++||+ |+..
T Consensus 6 piLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm~kVP~L~i~g~tl~eS~AII~YLeEt~P~p 85 (217)
T KOG0868|consen 6 PILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPMEKVPTLVIDGLTLTESLAIIEYLEETYPDP 85 (217)
T ss_pred chhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCchhhCCeEEECCEEeehHHHHHHHHHhcCCCC
Confidence 5789999999999999999999999999999998774 445689999999999999999999999999999999 7765
Q ss_pred ----CCchhhHHHHHHHhhcccccceecccCCCCccChh---HHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccC--C
Q psy13750 80 ----DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTA---FLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEK--W 150 (173)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~ 150 (173)
.++..|+.+++...... + .+.|. ..+...-.............-+.+.+..||+.|.. +
T Consensus 86 pLLP~d~~KRA~~r~i~~~i~-----------s-gIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aG 153 (217)
T KOG0868|consen 86 PLLPKDPHKRAKARAISLLIA-----------S-GIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAG 153 (217)
T ss_pred CCCCcCHHHHHHHHHHHHHHH-----------h-CCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccC
Confidence 35778999998888777 6 77762 12221111111122455667788999999999964 7
Q ss_pred ceeccCCCchhhhhhhhhhc
Q psy13750 151 TYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 151 ~~l~G~~~T~aD~~~~~~l~ 170 (173)
+|.+||++|+||+++.+.+.
T Consensus 154 kycvGDevtiADl~L~pqv~ 173 (217)
T KOG0868|consen 154 KYCVGDEVTIADLCLPPQVY 173 (217)
T ss_pred CcccCceeehhhhccchhhh
Confidence 99999999999999988764
No 13
>PRK10357 putative glutathione S-transferase; Provisional
Probab=99.95 E-value=3.9e-27 Score=168.19 Aligned_cols=152 Identities=17% Similarity=0.173 Sum_probs=115.8
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe-eCCeEeecccccccccc--ccCC
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD-DNGFILWDRTSMVGPIL--YFKN 79 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~~I~~yl~--~~~~ 79 (173)
++||+++.||++++||++|+++|++|+.+.++... ..+++.+.||.|+||+|+ ++|.+++||.+|++||+ +++.
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~---~~~~~~~~nP~g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~ 77 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYN---ADNGVAQYNPLGKVPALVTEEGECWFDSPIIAEYIELLNVAP 77 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCC---CchhhhhcCCccCCCeEEeCCCCeeecHHHHHHHHHHhCCCC
Confidence 57999999999999999999999999998887533 245667789999999998 78899999999999999 5432
Q ss_pred ----CCchhhHHHHHHHhhcccccceecccCCCCccCh-hHHHHHhhhccCC---CCCHHHHHHHHHHHHHHHhhccCCc
Q psy13750 80 ----DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDT-AFLKFRILFAKKK---DIPEENIRRTRDVYSLVEKFLEKWT 151 (173)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~le~~L~~~~ 151 (173)
.++.+++++++|..|.. + .+.. ............. ...+.....+.+.++.||++|++++
T Consensus 78 ~l~p~~~~~~a~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~ 145 (202)
T PRK10357 78 AMLPRDPLAALRVRQLEALAD-----------G-IMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT 145 (202)
T ss_pred CCCCCCHHHHHHHHHHHHHHH-----------H-HHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 34567888999987765 3 3322 1111111111111 1223456789999999999998878
Q ss_pred eeccCCCchhhhhhhhhhc
Q psy13750 152 YIACDHITIADFSIVTTLT 170 (173)
Q Consensus 152 ~l~G~~~T~aD~~~~~~l~ 170 (173)
++|+++|+||+++++++.
T Consensus 146 -l~Gd~~t~ADi~l~~~l~ 163 (202)
T PRK10357 146 -LKTDTVNLATIAIACAVG 163 (202)
T ss_pred -ccCCCcCHHHHHHHHHHH
Confidence 999999999999988765
No 14
>PRK10387 glutaredoxin 2; Provisional
Probab=99.94 E-value=3.5e-27 Score=169.35 Aligned_cols=165 Identities=14% Similarity=0.054 Sum_probs=115.5
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceE-eeCCeEeecccccccccc--ccCC
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVL-DDNGFILWDRTSMVGPIL--YFKN 79 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L-~~~g~~l~eS~~I~~yl~--~~~~ 79 (173)
|+||+++.||+|+|+|++|+++|++|+.+.++.. ++..+ .+.||.++||+| .+||..++||.+|++||+ |+.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~--~~~~~--~~~~p~~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~ 76 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLAND--DEATP--IRMIGQKQVPILQKDDGSYMPESLDIVHYIDELDGKP 76 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCC--chhhH--HHhcCCcccceEEecCCeEecCHHHHHHHHHHhCCCc
Confidence 5799999999999999999999999999887532 22222 568999999999 488999999999999999 7754
Q ss_pred CC-chhhHHHHHHHhhcccccceeccc--CC---CCccCh-h-HHHHHhh--hccC----CCCCHHHHHHHHHHHHHHHh
Q psy13750 80 DS-PPVRSVKLCLLSLDLTVQLKQVTF--AP---GETLDT-A-FLKFRIL--FAKK----KDIPEENIRRTRDVYSLVEK 145 (173)
Q Consensus 80 ~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~-~-~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~le~ 145 (173)
.. ...++.+++|+++........+.. .. .+.... . ..+.... ..+. ....+...+++++.|+.+|+
T Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~ 156 (210)
T PRK10387 77 LLTGKRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALDP 156 (210)
T ss_pred cCCCcccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 22 246788899987654222111100 00 000000 0 0000000 1111 11235677899999999999
Q ss_pred hccCCceeccCCCchhhhhhhhhhccc
Q psy13750 146 FLEKWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 146 ~L~~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
+|++ +|++|+++|+||+++++++..+
T Consensus 157 ~L~~-~~l~G~~~s~ADi~l~~~l~~~ 182 (210)
T PRK10387 157 LIVK-PNAVNGELSTDDIHLFPILRNL 182 (210)
T ss_pred HhcC-ccccCCCCCHHHHHHHHHHhcc
Confidence 9987 9999999999999999998654
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=99.94 E-value=3.1e-26 Score=164.83 Aligned_cols=139 Identities=20% Similarity=0.215 Sum_probs=105.5
Q ss_pred ccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccCC--CCc
Q psy13750 7 YVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFKN--DSP 82 (173)
Q Consensus 7 ~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~~--~~~ 82 (173)
++..||+|+|++++|+++|++|+.+.+++. +++++|++.||.|+||+|++||.+|+||.+|++||+ |+.. .++
T Consensus 16 ~~~~~p~~~rv~~~L~e~gl~~e~~~v~~~---~~~~~~l~inP~G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l~~~ 92 (213)
T PLN02378 16 HLGDCPFSQRALLTLEEKSLTYKIHLINLS---DKPQWFLDISPQGKVPVLKIDDKWVTDSDVIVGILEEKYPDPPLKTP 92 (213)
T ss_pred CCCCCcchHHHHHHHHHcCCCCeEEEeCcc---cCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHhCCCCCCCCH
Confidence 356799999999999999999999999874 356789999999999999999999999999999999 7643 234
Q ss_pred hhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhcc--CCceeccCCCch
Q psy13750 83 PVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLE--KWTYIACDHITI 160 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~T~ 160 (173)
.+++.+++++.. .+ ...... ....+.....+.+.+..+|++|+ +++|++|+++|+
T Consensus 93 ~~~a~i~~~~~~---------------~~------~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ 149 (213)
T PLN02378 93 AEFASVGSNIFG---------------TF------GTFLKS--KDSNDGSEHALLVELEALENHLKSHDGPFIAGERVSA 149 (213)
T ss_pred HHHHHHHHHHHH---------------HH------HHHHhc--CChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCch
Confidence 445544432211 10 000111 11123445677888999999997 479999999999
Q ss_pred hhhhhhhhhcc
Q psy13750 161 ADFSIVTTLTT 171 (173)
Q Consensus 161 aD~~~~~~l~~ 171 (173)
||+++++++.+
T Consensus 150 ADi~l~~~~~~ 160 (213)
T PLN02378 150 VDLSLAPKLYH 160 (213)
T ss_pred hhHHHHHHHHH
Confidence 99999998654
No 16
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=99.93 E-value=7.3e-26 Score=163.90 Aligned_cols=142 Identities=13% Similarity=0.118 Sum_probs=103.7
Q ss_pred CCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccCC----CCc
Q psy13750 9 HGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFKN----DSP 82 (173)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~~----~~~ 82 (173)
+.||+|++++++|.++|++|+.+.+++. +++++|+++||.|+||+|+++|.+++||.+|++||+ |+++ ..+
T Consensus 17 ~~cp~~~rv~i~L~ekgi~~e~~~vd~~---~~~~~fl~inP~g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p 93 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGVVFNVTTVDLK---RKPEDLQNLAPGTHPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSP 93 (236)
T ss_pred CCCHhHHHHHHHHHHcCCCcEEEEECCC---CCCHHHHHHCcCCCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCC
Confidence 5799999999999999999999999875 347899999999999999999999999999999999 7542 112
Q ss_pred hhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhcc--------------
Q psy13750 83 PVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLE-------------- 148 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~-------------- 148 (173)
..+.......++.. ....+ .....+...+.....+.+.++.||++|+
T Consensus 94 ~~~~~~~~~~~l~~----------------~~~~~---~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~ 154 (236)
T TIGR00862 94 KHPESNTAGLDIFA----------------KFSAY---IKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAED 154 (236)
T ss_pred CCHHHHHHHHHHHH----------------HHHHH---HHcCCHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccc
Confidence 21111111011111 01111 1111122224455668899999999986
Q ss_pred ----CCceeccCCCchhhhhhhhhhccc
Q psy13750 149 ----KWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 149 ----~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
+++|+.|+++|+|||++++.+..+
T Consensus 155 ~~~~~~~f~~Gd~~tlaD~~l~p~l~~l 182 (236)
T TIGR00862 155 EKVSRRKFLDGDELTLADCNLLPKLHIV 182 (236)
T ss_pred ccccCCCcccCCccchhhHHHHHHHHHH
Confidence 579999999999999999998654
No 17
>PTZ00057 glutathione s-transferase; Provisional
Probab=99.93 E-value=9.9e-26 Score=161.34 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=105.3
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCC-CchHHH--hhCCCCccceEeeCCeEeecccccccccc--cc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKEN-LQPAFL--EKNPMHSVPVLDDNGFILWDRTSMVGPIL--YF 77 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~--~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~ 77 (173)
++|||++.+++++++|++|+++|++|+.+.++....+. ..+++. +.||+|+||+|++||.+|+||.||++||+ ++
T Consensus 5 ~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~~~~~~~~~~~~~~~~~nP~g~vP~L~~~~~~l~eS~AI~~YLa~~~~ 84 (205)
T PTZ00057 5 IVLYYFDARGKAELIRLIFAYLGIEYTDKRFGENGDAFIEFKNFKKEKDTPFEQVPILEMDNIIFAQSQAIVRYLSKKYK 84 (205)
T ss_pred eEEEecCCCcchHHHHHHHHHcCCCeEEEeccccchHHHHHHhccccCCCCCCCCCEEEECCEEEecHHHHHHHHHHHcC
Confidence 89999999999999999999999999998764211000 011222 47999999999999999999999999999 65
Q ss_pred CCCCchhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccCC--ceecc
Q psy13750 78 KNDSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKW--TYIAC 155 (173)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~--~~l~G 155 (173)
..+ .....++..|+.+.... + .... ........ +...+.....+.+.+..||+.|+++ +|++|
T Consensus 85 ~~~-~~~~~~~~~~~~~~~~~---------~-~~~~--~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G 149 (205)
T PTZ00057 85 ICG-ESELNEFYADMIFCGVQ---------D-IHYK--FNNTNLFK--QNETTFLNEELPKWSGYFENILKKNHCNYFVG 149 (205)
T ss_pred CCC-CCHHHHHHHHHHHHHHH---------H-HHHH--HhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeC
Confidence 432 23344444444332200 0 0000 00000000 0112445678999999999999754 89999
Q ss_pred CCCchhhhhhhhhhcc
Q psy13750 156 DHITIADFSIVTTLTT 171 (173)
Q Consensus 156 ~~~T~aD~~~~~~l~~ 171 (173)
+++|+||+++++.+..
T Consensus 150 d~~T~AD~~l~~~~~~ 165 (205)
T PTZ00057 150 DNLTYADLAVFNLYDD 165 (205)
T ss_pred CcccHHHHHHHHHHHH
Confidence 9999999999987654
No 18
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.93 E-value=3.4e-25 Score=158.95 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=112.0
Q ss_pred EEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe-eCCeEeecccccccccc--ccCCC
Q psy13750 4 TLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD-DNGFILWDRTSMVGPIL--YFKND 80 (173)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~~I~~yl~--~~~~~ 80 (173)
+||++..||+|+|+|++|+++|++|+.+.+.. +++. ...+.||.|+||+|+ +||..++||.+|++||+ |+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~--~~~~--~~~~~np~g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~ 76 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLN--DDEE--TPIRMIGAKQVPILQKDDGRAMPESLDIVAYFDKLDGEPL 76 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCC--Ccch--hHHHhcCCCCcceEEeeCCeEeccHHHHHHHHHHhCCCcc
Confidence 58999999999999999999999999876642 2222 337889999999998 89999999999999999 76532
Q ss_pred -CchhhHHHHHHHhhcccccceecccCCC----Ccc-Ch-h-HHHHHhhhccCC------CCCHHHHHHHHHHHHHHHhh
Q psy13750 81 -SPPVRSVKLCLLSLDLTVQLKQVTFAPG----ETL-DT-A-FLKFRILFAKKK------DIPEENIRRTRDVYSLVEKF 146 (173)
Q Consensus 81 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~-~-~~~~~~~~~~~~------~~~~~~~~~~~~~l~~le~~ 146 (173)
.+..++++++|+.+........+..... ..+ .+ . ..+......+.. ...++..+.+++.++.+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~~ 156 (209)
T TIGR02182 77 LTGKVSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDKL 156 (209)
T ss_pred CCCCChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 2335677888886544222111100000 000 00 0 000000000100 11245678899999999999
Q ss_pred ccCCceeccCCCchhhhhhhhhhccc
Q psy13750 147 LEKWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 147 L~~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
|++++|+.| ++|+||+++++.+..+
T Consensus 157 L~~~~~l~g-~~TiADi~l~~~l~~~ 181 (209)
T TIGR02182 157 IDGPNAVNG-ELSEDDILVFPLLRNL 181 (209)
T ss_pred HhCccccCC-CCCHHHHHHHHHhcCe
Confidence 999999955 6999999999987654
No 19
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=99.92 E-value=7.6e-25 Score=161.65 Aligned_cols=137 Identities=19% Similarity=0.234 Sum_probs=105.9
Q ss_pred CCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccCC--CCchh
Q psy13750 9 HGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFKN--DSPPV 84 (173)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~~--~~~~~ 84 (173)
..||+|+|++++|+++|++|+.+.+++. ++.++|+++||.|+||+|+++|.+|+||.+|++||+ |+.. .++.+
T Consensus 71 g~cp~s~rV~i~L~ekgi~ye~~~vdl~---~~~~~fl~iNP~GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~~~~e 147 (265)
T PLN02817 71 GDCPFCQRVLLTLEEKHLPYDMKLVDLT---NKPEWFLKISPEGKVPVVKLDEKWVADSDVITQALEEKYPDPPLATPPE 147 (265)
T ss_pred CCCcHHHHHHHHHHHcCCCCEEEEeCcC---cCCHHHHhhCCCCCCCEEEECCEEEecHHHHHHHHHHHCCCCCCCCHHH
Confidence 3499999999999999999999999864 457889999999999999988899999999999999 6643 34567
Q ss_pred hHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccC-CceeccCCCchhhh
Q psy13750 85 RSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEK-WTYIACDHITIADF 163 (173)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~T~aD~ 163 (173)
++.+++|+...- . ...... ...+.....+.+.+..||++|++ ++|++|+++|+||+
T Consensus 148 ra~i~~~l~~~~-----------~----------~~~~~~--~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi 204 (265)
T PLN02817 148 KASVGSKIFSTF-----------I----------GFLKSK--DPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADL 204 (265)
T ss_pred HHHHHHHHHHHH-----------H----------HHhccC--CcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHH
Confidence 777766542111 0 001111 11123345677889999999974 79999999999999
Q ss_pred hhhhhhcc
Q psy13750 164 SIVTTLTT 171 (173)
Q Consensus 164 ~~~~~l~~ 171 (173)
++++.+..
T Consensus 205 ~l~p~L~~ 212 (265)
T PLN02817 205 SLGPKLYH 212 (265)
T ss_pred HHHHHHHH
Confidence 99998754
No 20
>KOG1695|consensus
Probab=99.90 E-value=1.1e-23 Score=148.53 Aligned_cols=157 Identities=16% Similarity=0.140 Sum_probs=115.8
Q ss_pred Cc-eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--cc
Q psy13750 1 MA-LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YF 77 (173)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~ 77 (173)
|+ ++|+|++..++++.+|++++++|++|+.+++..... .+..+...|+||+|+|..||..|.+|.||+|||+ ++
T Consensus 1 m~~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~---w~~~K~~~pfgqlP~l~vDg~~i~QS~AI~RyLArk~g 77 (206)
T KOG1695|consen 1 MPPYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDA---WEELKDKMPFGQLPVLEVDGKKLVQSRAILRYLARKFG 77 (206)
T ss_pred CCceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccc---hhhhcccCCCCCCCEEeECCEeeccHHHHHHHHHHHhC
Confidence 55 899999999999999999999999999999975431 3444555899999999999999999999999999 54
Q ss_pred CC-CCchhhHHHHHHHhhcccccceecccCCCCccCh-hH-HHHHhhhccCCCCCH-HHHHHHHHHHHHHHhhcc--CCc
Q psy13750 78 KN-DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDT-AF-LKFRILFAKKKDIPE-ENIRRTRDVYSLVEKFLE--KWT 151 (173)
Q Consensus 78 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~~le~~L~--~~~ 151 (173)
-. .++.+.+.++...+-.. + .... .. .......+..+...+ .......+.+..+++.|. ++.
T Consensus 78 l~Gkt~~E~a~vD~i~d~~~-----------D-~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sg 145 (206)
T KOG1695|consen 78 LAGKTEEEEAWVDMIVDQFK-----------D-FRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSG 145 (206)
T ss_pred cCCCCHHHHHHHHHHHHhhh-----------h-HHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCC
Confidence 32 45788888888777554 1 1111 00 111111111111111 455677888999999987 467
Q ss_pred eeccCCCchhhhhhhhhhccc
Q psy13750 152 YIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 152 ~l~G~~~T~aD~~~~~~l~~l 172 (173)
||+||++|+||+.++..+..+
T Consensus 146 flvGd~lT~aDl~i~e~l~~l 166 (206)
T KOG1695|consen 146 FLVGDKLTWADLVIAEHLDTL 166 (206)
T ss_pred eeecCcccHHHHHHHHHHHHH
Confidence 999999999999999887654
No 21
>KOG4420|consensus
Probab=99.89 E-value=8.2e-24 Score=150.14 Aligned_cols=73 Identities=30% Similarity=0.316 Sum_probs=71.6
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
+.||++|.|-.++|||+++.+|||+|+...|++.++++..+||..+||.|.||||++|..+|.|+..|++|++
T Consensus 27 ~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~gevPVl~~g~~II~d~tqIIdYvE 99 (325)
T KOG4420|consen 27 LVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPGGEVPVLIHGDNIISDYTQIIDYVE 99 (325)
T ss_pred ceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCCCCCceEecCCeecccHHHHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999999999999999999999999
No 22
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.88 E-value=1.5e-22 Score=121.52 Aligned_cols=73 Identities=30% Similarity=0.334 Sum_probs=68.9
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.|++|+++|++|+++|++|+.+.+++..++++.++|.+.||.|+||+|++||.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999887777778899999999999999999999999999999985
No 23
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.85 E-value=1.8e-21 Score=117.37 Aligned_cols=73 Identities=49% Similarity=0.916 Sum_probs=68.6
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.||+|++++++|+++|++|+.+.+++..+++..+++++.||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLV 73 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 5899999999999999999999999999999887777778999999999999999999999999999999985
No 24
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.85 E-value=3.5e-21 Score=115.67 Aligned_cols=73 Identities=26% Similarity=0.393 Sum_probs=68.3
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.||+|++++++|+++|++|+.+.+++..++++.+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999999876666778899999999999999999999999999999984
No 25
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.84 E-value=7.5e-21 Score=115.19 Aligned_cols=74 Identities=27% Similarity=0.474 Sum_probs=68.7
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
+++||+++.||+|+++|++|+++|++|+.+.++...+++..+++.+.||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 1 VLKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred CeEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 37899999999999999999999999999999876666677899999999999999999999999999999985
No 26
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.84 E-value=1.1e-20 Score=113.65 Aligned_cols=73 Identities=27% Similarity=0.378 Sum_probs=67.2
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.|+++++++++|+++|++|+.+.++...+++..++|++.||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCCCCCCEEEECCEEEECHHHHHHHhC
Confidence 4799999999999999999999999999988865555667899999999999999999999999999999985
No 27
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.83 E-value=1.4e-20 Score=114.08 Aligned_cols=73 Identities=27% Similarity=0.421 Sum_probs=68.3
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.|++|++++++|+++|++|+.+.++...+++..+++.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5799999999999999999999999999999887666677899999999999999999999999999999996
No 28
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.83 E-value=1.3e-20 Score=115.49 Aligned_cols=75 Identities=23% Similarity=0.383 Sum_probs=68.4
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeC---CeEeecccccccccc--c
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN---GFILWDRTSMVGPIL--Y 76 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~---g~~l~eS~~I~~yl~--~ 76 (173)
|++||+++. |+|++++++|+++|++|+.+.+++..+++++++|++.||.++||+|+++ |..++||.+|++||+ |
T Consensus 1 ~~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 1 MITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred CeEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcCCCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 479999986 9999999999999999999999876666778899999999999999976 899999999999998 5
Q ss_pred c
Q psy13750 77 F 77 (173)
Q Consensus 77 ~ 77 (173)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 4
No 29
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.83 E-value=1.2e-20 Score=113.65 Aligned_cols=73 Identities=29% Similarity=0.506 Sum_probs=67.1
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe-eCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD-DNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.||+|+|+|++|+++|++|+.+.++...+++..+++.+.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCCCCCCEEEeCCCCEEecHHHHHHHhC
Confidence 58999999999999999999999999999998766666678899999999999998 57889999999999985
No 30
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.82 E-value=2.6e-20 Score=111.88 Aligned_cols=73 Identities=27% Similarity=0.424 Sum_probs=68.3
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.|++|+++|++|+++|++|+.+.+++..+.++.+++++.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999999987666778899999999999999999999999999999985
No 31
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.82 E-value=1.7e-20 Score=113.88 Aligned_cols=72 Identities=28% Similarity=0.386 Sum_probs=63.8
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEee--CCeEeecccccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDD--NGFILWDRTSMVGPIL 75 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~--~g~~l~eS~~I~~yl~ 75 (173)
|++||+++.||+|+|++++|.++|++|+.+.++ .+++..+++++.||.++||+|++ +|..++||.+|++||+
T Consensus 1 ~~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~--~~~~~~~~~~~~~p~~~vP~l~~~~~~~~l~es~~I~~yL~ 74 (77)
T cd03041 1 PLELYEFEGSPFCRLVREVLTELELDVILYPCP--KGSPKRDKFLEKGGKVQVPYLVDPNTGVQMFESADIVKYLF 74 (77)
T ss_pred CceEecCCCCchHHHHHHHHHHcCCcEEEEECC--CChHHHHHHHHhCCCCcccEEEeCCCCeEEEcHHHHHHHHH
Confidence 479999999999999999999999999998774 33445678999999999999986 4789999999999996
No 32
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.82 E-value=2.8e-20 Score=112.36 Aligned_cols=71 Identities=31% Similarity=0.451 Sum_probs=65.2
Q ss_pred EeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccC
Q psy13750 5 LYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFK 78 (173)
Q Consensus 5 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~ 78 (173)
||+++.||+|+|+|++|+++|++|+.+.++.. ...+++.+.||.++||+|++||.+++||.+|++||+ |++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~---~~~~~~~~~~p~~~vPvL~~~g~~l~dS~~I~~yL~~~~~~ 73 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPE---EKRPEFLKLNPKGKVPVLVDDGEVLTDSAAIIEYLEERYPG 73 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTT---STSHHHHHHSTTSBSSEEEETTEEEESHHHHHHHHHHHSTS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcc---cchhHHHhhcccccceEEEECCEEEeCHHHHHHHHHHHcCC
Confidence 79999999999999999999999999998743 337889999999999999999999999999999999 654
No 33
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.81 E-value=2.3e-20 Score=112.11 Aligned_cols=71 Identities=20% Similarity=0.237 Sum_probs=64.6
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
|++||+++.|++|+++|++|+++|++|+.+.++. +++.+++.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~---~~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 71 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTY---EEWQESLKPKMLFGQLPCFKDGDLTLVQSNAILRHLG 71 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecH---HHhhhhhhccCCCCCCCEEEECCEEEEcHHHHHHHHh
Confidence 5799999999999999999999999999999875 2335578899999999999999999999999999985
No 34
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.81 E-value=4.2e-20 Score=111.81 Aligned_cols=73 Identities=32% Similarity=0.488 Sum_probs=63.3
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCC-CccceEeeC-CeEeecccccccccc
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPM-HSVPVLDDN-GFILWDRTSMVGPIL 75 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~-g~~l~eS~~I~~yl~ 75 (173)
|++++|+.+ +++.++|++|+++|++|+.+.+++..++++.++|++.||. |++|+|+++ |..++||.||++||+
T Consensus 1 ~~l~l~~~~--~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa 75 (76)
T PF02798_consen 1 MTLTLYNGR--GRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLA 75 (76)
T ss_dssp EEEEEESSS--TTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHH
T ss_pred CEEEEECCC--CchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhC
Confidence 455555555 4999999999999999999999988787778999999999 999999998 999999999999985
No 35
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.81 E-value=5.9e-20 Score=110.96 Aligned_cols=72 Identities=26% Similarity=0.404 Sum_probs=65.9
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEee-CCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDD-NGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~~I~~yl~ 75 (173)
.+||+++.|++|++++++|+++|++|+.+.+++..+ ++.++|++.||.|++|+|++ +|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~-~~~~~~~~~nP~~~vP~L~~~~g~~l~es~aI~~yL~ 73 (75)
T cd03044 1 GTLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKE-NKTPEFLKKFPLGKVPAFEGADGFCLFESNAIAYYVA 73 (75)
T ss_pred CeEecCCCCccHHHHHHHHHHcCCceEEEecccccc-cCCHHHHHhCCCCCCCEEEcCCCCEEeeHHHHHHHHh
Confidence 379999999999999999999999999999987543 77889999999999999995 5889999999999985
No 36
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.81 E-value=7.6e-20 Score=110.20 Aligned_cols=70 Identities=26% Similarity=0.301 Sum_probs=64.0
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCC-CccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPM-HSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.||+|+|+|++|+++|++|+.+.++.. ++.+++.+.||. +++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~---~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLG---NKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcc---cCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHH
Confidence 5799999999999999999999999999987753 456789999995 999999999999999999999996
No 37
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.81 E-value=8.9e-20 Score=109.57 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=64.8
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
|+||+.+.||+|++++++|+++|++|+.+.++.. +..+++++.||.|++|+|+++|..++||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPD---NPPEDLAELNPYGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCC---CCCHHHHhhCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 5799999999999999999999999999988753 456889999999999999999999999999999996
No 38
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.79 E-value=2.1e-19 Score=109.11 Aligned_cols=72 Identities=26% Similarity=0.407 Sum_probs=65.7
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeC-CeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN-GFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~~I~~yl~ 75 (173)
++||+++.+ .++++|++|+++|++|+.+.++..+++++.+++++.||.+++|+|+++ |..++||.+|++||+
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~~~vP~l~~~~g~~l~eS~aI~~yL~ 73 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYLA 73 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCCCCCCEEEECCCcEEEcHHHHHHHHH
Confidence 479999975 589999999999999999999887777778999999999999999976 899999999999998
No 39
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.79 E-value=2.5e-19 Score=108.42 Aligned_cols=72 Identities=24% Similarity=0.349 Sum_probs=66.0
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++. +++++++++|+++|++|+.+.++..+++++.+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~~~vP~l~~~g~~l~es~aI~~yL~ 72 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLA 72 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHHH
Confidence 47999886 6899999999999999999999876566778899999999999999999999999999999998
No 40
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.79 E-value=2.9e-19 Score=106.82 Aligned_cols=68 Identities=24% Similarity=0.318 Sum_probs=62.3
Q ss_pred EEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEee-CCeEeeccccccccc
Q psy13750 4 TLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDD-NGFILWDRTSMVGPI 74 (173)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~~I~~yl 74 (173)
+||+++.||+|+|++++|+++|++|+.+.+++. .+.+++++.||.|+||+|++ ||..++||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~---~~~~~~~~~np~~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELK---NKPAEMLAASPKGTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCC---CCCHHHHHHCCCCCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999864 34578999999999999997 499999999999997
No 41
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.79 E-value=1.3e-19 Score=108.63 Aligned_cols=71 Identities=15% Similarity=0.154 Sum_probs=63.2
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.|++|+++|++|+++|++|+.+.++... ...+++.+.||.+++|+|+++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~--~~~~~~~~~~p~~~vP~L~~~~~~l~es~aI~~yL~ 71 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEE--WPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYLA 71 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHH--hhhhhhccCCcCCCCCEEEECCEEEEecHHHHHHhh
Confidence 58999999999999999999999999999887532 223458889999999999999999999999999985
No 42
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.79 E-value=2.9e-19 Score=110.52 Aligned_cols=67 Identities=15% Similarity=0.109 Sum_probs=61.0
Q ss_pred CCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccC
Q psy13750 9 HGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFK 78 (173)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~ 78 (173)
..||||+++|++|++||++|+.+.+++. +++++|+++||.|++|+|+++|.+++||.+|++||+ +.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~---~~p~~~~~~nP~g~vPvL~~~~~~i~eS~~I~eYLde~~~~ 88 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMK---RKPEDLKDLAPGTQPPFLLYNGEVKTDNNKIEEFLEETLCP 88 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCC---CCCHHHHHhCCCCCCCEEEECCEEecCHHHHHHHHHHHccC
Confidence 4689999999999999999999999863 456889999999999999999999999999999999 554
No 43
>PLN02907 glutamate-tRNA ligase
Probab=99.78 E-value=1.1e-18 Score=143.40 Aligned_cols=122 Identities=19% Similarity=0.131 Sum_probs=100.6
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe-eCCeEeecccccccccc--cc
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD-DNGFILWDRTSMVGPIL--YF 77 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~~I~~yl~--~~ 77 (173)
|+++||+.+.|+ +.++.++|++.|++|+.+. .+|.|+||+|+ ++|..++||.||++||+ ++
T Consensus 1 ~~~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~---------------~~p~GkVPvLv~ddG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 MEAKLSFPPDSP-PLAVIAAAKVAGVPLTIDP---------------SLKSGSAPTLLFSSGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred CeEEEEECCCCC-hHHHHHHHHHcCCCcEEee---------------cCCCCCCcEEEECCCCEEECHHHHHHHHHHhCC
Confidence 789999999875 5579999999999998864 15899999998 68899999999999999 64
Q ss_pred CC----CCchhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccCCcee
Q psy13750 78 KN----DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYI 153 (173)
Q Consensus 78 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 153 (173)
.. .++.+++++++|+.|.. . .. . ...+.+.++.||++|++++||
T Consensus 65 ~~~L~p~d~~erAqV~qWL~~~~-----------~-~~-~-------------------~~~l~~~L~~LE~~L~~rtYL 112 (722)
T PLN02907 65 LPGFYGQDAFESSQVDEWLDYAP-----------T-FS-S-------------------GSEFENACEYVDGYLASRTFL 112 (722)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHh-----------h-cc-c-------------------HHHHHHHHHHHHHHhccCCee
Confidence 32 24678999999999876 3 11 0 013567889999999999999
Q ss_pred ccCCCchhhhhhhhhhc
Q psy13750 154 ACDHITIADFSIVTTLT 170 (173)
Q Consensus 154 ~G~~~T~aD~~~~~~l~ 170 (173)
+|+++|+||+++++.+.
T Consensus 113 vGd~lTLADIaL~~~L~ 129 (722)
T PLN02907 113 VGYSLTIADIAIWSGLA 129 (722)
T ss_pred cCCCCCHHHHHHHHHHH
Confidence 99999999999998763
No 44
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.78 E-value=6.4e-19 Score=109.84 Aligned_cols=71 Identities=24% Similarity=0.344 Sum_probs=64.2
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeC-CeEeecccccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN-GFILWDRTSMVGPIL 75 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~~I~~yl~ 75 (173)
+++||+++.||+|++++++|+++|++|+.+.++.. ...+++.+.||.+++|+|+++ |..++||.+|++||+
T Consensus 18 ~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~---~~~~~~~~~np~~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 18 IIRLYSMRFCPYAQRARLVLAAKNIPHEVININLK---DKPDWFLEKNPQGKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred cEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCC---CCcHHHHhhCCCCCcCEEEECCCCEEECHHHHHHhhC
Confidence 58999999999999999999999999999988753 235678899999999999976 899999999999985
No 45
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.78 E-value=6.4e-19 Score=105.85 Aligned_cols=70 Identities=29% Similarity=0.422 Sum_probs=63.3
Q ss_pred eEEeccCCChhHHHHHHHHHH--cCCceeEEecccCCCCCCchHHHhhCCCCccceEe-eCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA--LGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD-DNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.||+|+++|++|++ +|++|+.+.++. ..+.+++++.||.+++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~---~~~~~~~~~~~p~~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNP---WSDDESLLAVNPLGKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCc---ccCChHHHHhCCCCCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 899999998874 34568899999999999998 58899999999999985
No 46
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.77 E-value=7.3e-19 Score=105.05 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=59.3
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeC-CeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN-GFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~~I~~yl~ 75 (173)
|+||+++.||+|+|+|++|.++|++|+.+.++.. . .....+.+|.+++|+|+++ |..++||.+|++||+
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~--~--~~~~~~~~~~~~vP~L~~~~~~~l~es~aI~~yL~ 70 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQND--D--EATPIRMIGAKQVPILEKDDGSFMAESLDIVAFID 70 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCC--c--hHHHHHhcCCCccCEEEeCCCeEeehHHHHHHHHh
Confidence 5799999999999999999999999999887632 1 2234578999999999965 899999999999985
No 47
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.76 E-value=1.2e-18 Score=106.91 Aligned_cols=72 Identities=15% Similarity=0.121 Sum_probs=62.3
Q ss_pred EEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCC-chHHHh-----hCCCCccceEeeCCeEeecccccccccc
Q psy13750 4 TLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENL-QPAFLE-----KNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~-~~~~~~-----~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
+|||+..++.|+++|++|+++|++|+.+.+++.++++. .+++.. .+|+|+||+|++||.+++||.||++||+
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~g~vP~L~~~g~~l~ES~AIl~YLa 79 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDFPNLPYYIDGDVKLTQSNAILRYIA 79 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcCCCCCEEEECCEEEeehHHHHHHHh
Confidence 79999999999999999999999999999998665543 345542 2399999999999999999999999996
No 48
>KOG1422|consensus
Probab=99.73 E-value=8.4e-18 Score=116.38 Aligned_cols=139 Identities=15% Similarity=0.167 Sum_probs=105.8
Q ss_pred CChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc--ccCCCC----ch
Q psy13750 10 GSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL--YFKNDS----PP 83 (173)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~--~~~~~~----~~ 83 (173)
.||+|+++.|.|..+|++|.++.||+. .++++|+++.|.+++|+|..|+..++||..|-++|+ ++.+.. +.
T Consensus 20 dcpf~qr~~m~L~~k~~~f~vttVd~~---~kp~~f~~~sp~~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~ 96 (221)
T KOG1422|consen 20 DCPFCQRLFMTLELKGVPFKVTTVDLS---RKPEWFLDISPGGKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPP 96 (221)
T ss_pred CChhHHHHHHHHHHcCCCceEEEeecC---CCcHHHHhhCCCCCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCH
Confidence 589999999999999999999999874 346788899999999999999999999999999999 665522 22
Q ss_pred hhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccC---CceeccCCCch
Q psy13750 84 VRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEK---WTYIACDHITI 160 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~T~ 160 (173)
+.+.+- . . .+.. +...+....++..+..+..+-+.|..|+++|.. ++||.||++|.
T Consensus 97 E~asag------~-----------d-iF~k---F~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~ 155 (221)
T KOG1422|consen 97 ESASAG------S-----------D-IFAK---FSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTL 155 (221)
T ss_pred HHHhhH------H-----------H-HHHH---HHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeee
Confidence 222211 1 1 1111 111112233445667778888899999999974 79999999999
Q ss_pred hhhhhhhhhccc
Q psy13750 161 ADFSIVTTLTTL 172 (173)
Q Consensus 161 aD~~~~~~l~~l 172 (173)
||+.+.+-|.-+
T Consensus 156 aDcsLlPKL~~i 167 (221)
T KOG1422|consen 156 ADCSLLPKLHHI 167 (221)
T ss_pred ehhhhchhHHHH
Confidence 999999877643
No 49
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.73 E-value=1.2e-17 Score=100.19 Aligned_cols=69 Identities=25% Similarity=0.358 Sum_probs=61.7
Q ss_pred eccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 6 YYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 6 y~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
-+...|+++++++++|+++|++|+.+.++...+ ...++|.+.||.|++|+|+++|.+++||.+|++||+
T Consensus 5 ~~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~-~~~~~~~~~nP~g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 5 GNKNYSSWSLRPWLLLKAAGIPFEEILVPLYTP-DTRARILEFSPTGKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred cCCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCc-cccHHHHhhCCCCcCCEEEECCEEEEcHHHHHHHhC
Confidence 356789999999999999999999999986543 356899999999999999999999999999999984
No 50
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.73 E-value=4.2e-18 Score=105.05 Aligned_cols=66 Identities=23% Similarity=0.237 Sum_probs=57.8
Q ss_pred CCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeC-CeEeecccccccccc
Q psy13750 9 HGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN-GFILWDRTSMVGPIL 75 (173)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~-g~~l~eS~~I~~yl~ 75 (173)
+.||+|+|+|++|+++|++|+.+.++........+++ +.||.+++|+|+++ |..++||.+|++||+
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~~~vP~L~~~~~~~l~eS~aI~~yL~ 80 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGFYTVPVIVDGSGEVIGDSFAIAEYLE 80 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCCceeCeEEECCCCEEeCHHHHHHHHH
Confidence 5799999999999999999999998865444434455 78999999999988 899999999999998
No 51
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.73 E-value=8.2e-18 Score=101.52 Aligned_cols=64 Identities=22% Similarity=0.337 Sum_probs=57.8
Q ss_pred ceEEeccC-------CChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeeccccccccc
Q psy13750 2 ALTLYYVH-------GSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPI 74 (173)
Q Consensus 2 ~~~Ly~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl 74 (173)
|++||+++ .||+|+|++++|+++|++|+.+.++. .+.||.|++|+|+++|..++||.+|++||
T Consensus 1 m~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~----------~~~~p~g~vPvl~~~g~~l~eS~~I~~yL 70 (75)
T cd03080 1 MITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL----------AKRSPKGKLPFIELNGEKIADSELIIDHL 70 (75)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc----------ccCCCCCCCCEEEECCEEEcCHHHHHHHH
Confidence 36899998 68999999999999999999987753 25799999999999999999999999999
Q ss_pred c
Q psy13750 75 L 75 (173)
Q Consensus 75 ~ 75 (173)
+
T Consensus 71 ~ 71 (75)
T cd03080 71 E 71 (75)
T ss_pred H
Confidence 7
No 52
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.73 E-value=7.4e-18 Score=100.31 Aligned_cols=66 Identities=27% Similarity=0.401 Sum_probs=56.3
Q ss_pred CChhHHHHHHHHHHcCCceeEEeccc-CCCCCCchHHHhhCCCCccceEee-CCeEeecccccccccc
Q psy13750 10 GSPPVRATQLCIRALGLEVNYEFVNL-FQKENLQPAFLEKNPMHSVPVLDD-NGFILWDRTSMVGPIL 75 (173)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v~~-~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~~I~~yl~ 75 (173)
.||||+|++++|+++|++|+...+.. ..+..+.+++.+.||.|+||+|++ +|.+++||.+|++||+
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~~~VP~L~~~~g~vi~eS~~I~~yL~ 68 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPRGKVPVLVDPDGTVINESLAILEYLE 68 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT-SSSEEEETTTEEEESHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcCeEEEEEEECCCCEeeCHHHHHHHHh
Confidence 48999999999999999999988844 233455689999999999999996 7899999999999986
No 53
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.71 E-value=1.8e-17 Score=100.95 Aligned_cols=67 Identities=18% Similarity=0.299 Sum_probs=58.1
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhh-----CCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEK-----NPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~-----~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.|+.|++++++|+++|++|+.+.++.. +++.+. .|.|+||+|++||.+++||.||++||+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~------~~~~~~~~~~~~~~g~vP~L~~~g~~l~ES~AI~~YL~ 73 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA------EDLEKLKKDGSLMFQQVPMVEIDGMKLVQTRAILNYIA 73 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH------HHHHhhccccCCCCCCCCEEEECCEEEeeHHHHHHHHH
Confidence 5899999999999999999999999999988742 233333 358999999999999999999999998
No 54
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.71 E-value=2.9e-17 Score=97.25 Aligned_cols=71 Identities=35% Similarity=0.569 Sum_probs=62.7
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||+++.||+|++++++|+++|++|+.+.++..... ..++.+.+|.+++|+|+++|..+.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGE--QEEFLALNPLGKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCC--CHHHHhcCCCCCCCEEEECCEEEEcHHHHHHHhC
Confidence 5799999999999999999999999999988754332 2267889999999999999999999999999985
No 55
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.70 E-value=3.7e-17 Score=99.13 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=59.2
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeC----CeEeecccccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDN----GFILWDRTSMVGPIL 75 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~----g~~l~eS~~I~~yl~ 75 (173)
.++||+++.||+|+|+|++|+++|++|+.+.++... .++ .+.||.++||+|+++ |.+++||.+|++||+
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~----~~~-~~~~~~~~vP~l~~~~~~~~~~l~eS~~I~~yL~ 73 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS----RKE-IKWSSYKKVPILRVESGGDGQQLVDSSVIISTLK 73 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh----HHH-HHHhCCCccCEEEECCCCCccEEEcHHHHHHHHH
Confidence 378999999999999999999999999999876321 223 356999999999854 789999999999997
No 56
>KOG3029|consensus
Probab=99.69 E-value=3.4e-16 Score=112.84 Aligned_cols=166 Identities=17% Similarity=0.141 Sum_probs=106.0
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc-------
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL------- 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~------- 75 (173)
++||.+..||||-|||.+|.+.||+|++++|+.-. +.+ .+-+...+||.|..+|..+.||.+|+.-|.
T Consensus 91 l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~----r~e-Ik~SsykKVPil~~~Geqm~dSsvIIs~laTyLq~~~ 165 (370)
T KOG3029|consen 91 LVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVL----RQE-IKWSSYKKVPILLIRGEQMVDSSVIISLLATYLQDKR 165 (370)
T ss_pred EEEEeeccCchHHHHHHHHhhcCCceEEEEecchh----hhh-ccccccccccEEEeccceechhHHHHHHHHHHhccCC
Confidence 78999999999999999999999999999998421 112 223467899999977778999999988774
Q ss_pred ---------ccCC------CC---------------------chhhHHHHHHHhhcccccceecccCC----CCccChhH
Q psy13750 76 ---------YFKN------DS---------------------PPVRSVKLCLLSLDLTVQLKQVTFAP----GETLDTAF 115 (173)
Q Consensus 76 ---------~~~~------~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 115 (173)
||.- +. -..+..-+.|-+|.+....+.++.+. ++.+..+.
T Consensus 166 q~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFe 245 (370)
T KOG3029|consen 166 QDLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFE 245 (370)
T ss_pred CCHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHH
Confidence 2210 00 11223445566666554444443211 11111111
Q ss_pred HHHHh-hh--------------------------ccCCCCCHHHHHHHHHHHHHHHhhcc-CCceeccCCCchhhhhhhh
Q psy13750 116 LKFRI-LF--------------------------AKKKDIPEENIRRTRDVYSLVEKFLE-KWTYIACDHITIADFSIVT 167 (173)
Q Consensus 116 ~~~~~-~~--------------------------~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~T~aD~~~~~ 167 (173)
++... .+ -+.+.......+.+.+.++..-..|+ +++||.|++|.+||+++|+
T Consensus 246 wf~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfG 325 (370)
T KOG3029|consen 246 WFSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFG 325 (370)
T ss_pred HHHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhh
Confidence 11110 00 01122333455666666666666774 5899999999999999999
Q ss_pred hhcccC
Q psy13750 168 TLTTLE 173 (173)
Q Consensus 168 ~l~~l~ 173 (173)
+|..++
T Consensus 326 vl~sm~ 331 (370)
T KOG3029|consen 326 VLRSME 331 (370)
T ss_pred hhhHhh
Confidence 998753
No 57
>KOG4244|consensus
Probab=99.68 E-value=1.1e-16 Score=114.61 Aligned_cols=159 Identities=18% Similarity=0.117 Sum_probs=105.5
Q ss_pred eEEeccC-------CChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVH-------GSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
+-||.++ .||||.|+..+|+..+|||+.+.-. ....+..|++|.++-+|..+.||..|...|.
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~----------~~~rSr~G~lPFIELNGe~iaDS~~I~~~L~ 115 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCS----------LKRRSRNGTLPFIELNGEHIADSDLIEDRLR 115 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceecccc----------ceeeccCCCcceEEeCCeeccccHHHHHHHH
Confidence 4477764 6999999999999999999987432 2245788999999999999999999999999
Q ss_pred --ccCC--CCchhhHHHHHHHhhccccc--------------cee---cccCCCCccCh--hHHH-HHhhh----c---c
Q psy13750 76 --YFKN--DSPPVRSVKLCLLSLDLTVQ--------------LKQ---VTFAPGETLDT--AFLK-FRILF----A---K 124 (173)
Q Consensus 76 --~~~~--~~~~~~~~~~~~~~~~~~~~--------------~~~---~~~~~~~~~~~--~~~~-~~~~~----~---~ 124 (173)
+..+ ..+.++++........+... ... +....+ .+.+ ..++ +..+. . +
T Consensus 116 ~hf~~~~~L~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~-~l~~~l~~~~~~~~f~~kv~~r~~g 194 (281)
T KOG4244|consen 116 KHFKIPDDLSAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPG-FLFPLLLPLFWKAIFGKKVYKRSTG 194 (281)
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccc-cchHHHHHHHHHHHHHHHHHHHhhc
Confidence 4333 34556655443321111000 000 000111 1111 1111 11111 0 0
Q ss_pred -CCC-CCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhccc
Q psy13750 125 -KKD-IPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 125 -~~~-~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
.+. ..++....+++-++.++..|++++||+|+++|-+|+++|++|+++
T Consensus 195 ~IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v 244 (281)
T KOG4244|consen 195 AIGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQV 244 (281)
T ss_pred cccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhhe
Confidence 111 235578888999999999999999999999999999999999864
No 58
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.63 E-value=5.9e-16 Score=92.63 Aligned_cols=63 Identities=22% Similarity=0.273 Sum_probs=56.1
Q ss_pred eEEeccC-------CChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVH-------GSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~-------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++||.++ .||+|++++++|+++|++|+.+.++.. ..||.|++|+|+++|..+.||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~----------~~~p~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNP----------WRSPTGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCc----------ccCCCcccCEEEECCEEEcCHHHHHHHHh
Confidence 4678777 899999999999999999999988632 16899999999999999999999999985
No 59
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.1e-15 Score=100.51 Aligned_cols=164 Identities=14% Similarity=0.080 Sum_probs=107.2
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe-eCCeEeecccccccccc--ccCC
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD-DNGFILWDRTSMVGPIL--YFKN 79 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~~I~~yl~--~~~~ 79 (173)
|+||-+.+||||.|+||++..+|||++.+...... +..+ ..+-...+||+|+ ++|..+.||..|++|++ ++++
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDD-e~Tp---~rmiG~KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~ 76 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDD-EETP---IRMIGQKQVPILQKEDGRAMPESLDIVHYVDELDGKP 76 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCc-ccCh---hhhhcccccceEEccccccchhhhHHHHHHHHhcCch
Confidence 57999999999999999999999999988764322 1211 2334567899998 89999999999999999 6655
Q ss_pred -CCchhhHHHHHHHhhcccccceecc-----cCCCCccCh---hHHHHHhhhccCC------CCCHHHHHHHHHHHHHHH
Q psy13750 80 -DSPPVRSVKLCLLSLDLTVQLKQVT-----FAPGETLDT---AFLKFRILFAKKK------DIPEENIRRTRDVYSLVE 144 (173)
Q Consensus 80 -~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~---~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~le 144 (173)
.....+..+..|+.-...+..+-.. ..-. .|.. ...+......... ........++...++.++
T Consensus 77 ~lt~~~~pai~~wlrkv~~y~nkll~PR~~k~~l~-EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~ 155 (215)
T COG2999 77 LLTGKVRPAIEAWLRKVNGYLNKLLLPRFAKSALP-EFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALD 155 (215)
T ss_pred hhccCcCHHHHHHHHHhcchHhhhhhhhHhhcCCc-cccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHH
Confidence 4456677788887655433222111 0001 1111 0111110000000 123556788888888898
Q ss_pred hhccCCceeccCCCchhhhhhhhhhccc
Q psy13750 145 KFLEKWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 145 ~~L~~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
..+.+..=+- ..+++-|+.+|+.|..|
T Consensus 156 ~Li~~~s~~n-~~l~~ddi~vFplLRnl 182 (215)
T COG2999 156 KLIVGPSAVN-GELSEDDILVFPLLRNL 182 (215)
T ss_pred HHhcCcchhc-cccchhhhhhhHHhccc
Confidence 8876644333 46899999999998765
No 60
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.43 E-value=2.6e-13 Score=80.78 Aligned_cols=58 Identities=17% Similarity=0.132 Sum_probs=48.3
Q ss_pred CCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 9 HGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
+.+++|.|++++|++.|+||+.+.+ .+.+ ..+|.|+||+|++||.+++||.+|+.||+
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~--~~~~-------~~~P~GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCR--ANAE-------FMSPSGKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEec--CCcc-------ccCCCCcccEEEECCEEEeCHHHHHHHHh
Confidence 4578999999999999999988743 2111 14678999999999999999999999985
No 61
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=3.7e-12 Score=92.04 Aligned_cols=157 Identities=20% Similarity=0.220 Sum_probs=106.8
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeE--Eeccc---CCCCCCch------------------HHHhhCCC----Cccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNY--EFVNL---FQKENLQP------------------AFLEKNPM----HSVP 55 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~--~~v~~---~~~~~~~~------------------~~~~~~p~----~~vP 55 (173)
+.||..-.||++.|..++=++||++--. ..|.. .++....+ -|....|. -+||
T Consensus 52 YhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvTVP 131 (324)
T COG0435 52 YHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVTVP 131 (324)
T ss_pred EEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCceeEE
Confidence 6799999999999999999999986321 11211 11111111 12222332 2699
Q ss_pred eEeeC--Ce-Eeecccccccccc--cc---CC-C---CchhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhc
Q psy13750 56 VLDDN--GF-ILWDRTSMVGPIL--YF---KN-D---SPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFA 123 (173)
Q Consensus 56 ~L~~~--g~-~l~eS~~I~~yl~--~~---~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (173)
||.|- .. +-.||..|++-++ ++ .. . ....+.+++.|.+|..+...+ + + ++..+ .
T Consensus 132 VLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~Lr~eId~~n~~Iy~~vNN------G--V-----Yk~GF-A 197 (324)
T COG0435 132 VLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEALRTEIDELNKWIYDTVNN------G--V-----YKAGF-A 197 (324)
T ss_pred EEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHHHhhhcccccC------c--e-----eeecc-c
Confidence 99864 33 4589999999998 32 22 1 246788999999987732221 1 1 11111 1
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhcccC
Q psy13750 124 KKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTLE 173 (173)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~l~ 173 (173)
..+++-++...++-..|+.||..|+++.||+|+++|.||+-+|++|.++|
T Consensus 198 ~tq~aYeea~~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD 247 (324)
T COG0435 198 TTQEAYEEAVKKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFD 247 (324)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeec
Confidence 23455577778888999999999999999999999999999999999875
No 62
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.28 E-value=1.1e-11 Score=75.28 Aligned_cols=72 Identities=8% Similarity=0.070 Sum_probs=61.2
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++++||+.+.||+|.+++.+|+..|++|+.+.++-. ....++...++..++|++..||..+.++..|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~---~~~~~~~~~~g~~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGND---ARGRSLRAVTGATTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCC---hHHHHHHHHHCCCCcCeEEECCEEEcCHHHHHHHhC
Confidence 358999999999999999999999999999877521 223456667778899999999999999999999984
No 63
>KOG3027|consensus
Probab=99.25 E-value=4e-11 Score=83.24 Aligned_cols=155 Identities=15% Similarity=0.051 Sum_probs=107.5
Q ss_pred CCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc-ccC----CCCch
Q psy13750 9 HGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL-YFK----NDSPP 83 (173)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~-~~~----~~~~~ 83 (173)
+....|..|..+|+..++||.++.-. ..+| ++|.|+||.|..|.+.++|-.+|..+++ .+- ..+..
T Consensus 32 ~d~ascLAVqtfLrMcnLPf~v~~~~-------Naef--mSP~G~vPllr~g~~~~aef~pIV~fVeak~~~l~s~lsE~ 102 (257)
T KOG3027|consen 32 PDNASCLAVQTFLRMCNLPFNVRQRA-------NAEF--MSPGGKVPLLRIGKTLFAEFEPIVDFVEAKGVTLTSWLSED 102 (257)
T ss_pred ccchhHHHHHHHHHHcCCCceeeecC-------Cccc--cCCCCCCceeeecchhhhhhhHHHHHHHHhccchhhhhhhH
Confidence 34567999999999999999887532 2233 4899999999999999999999999998 322 22233
Q ss_pred hhHH--------------HHHHHhhcccccceecccCCCCccCh--hHHHHHhhh-----------ccCCCCCHHHHHHH
Q psy13750 84 VRSV--------------KLCLLSLDLTVQLKQVTFAPGETLDT--AFLKFRILF-----------AKKKDIPEENIRRT 136 (173)
Q Consensus 84 ~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----------~~~~~~~~~~~~~~ 136 (173)
+++. +.-+++|.++..+..++..+.-..+| .....+... .-...-.++...++
T Consensus 103 qkadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~v 182 (257)
T KOG3027|consen 103 QKADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQV 182 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHH
Confidence 3333 33345666666666665333213333 111111100 00122357788999
Q ss_pred HHHHHHHHhhccCCceeccCCCchhhhhhhhhhccc
Q psy13750 137 RDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 137 ~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
.++.+.|+.+|+..+|+.|++||-+|..+|+++..+
T Consensus 183 dkc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlyti 218 (257)
T KOG3027|consen 183 DKCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTI 218 (257)
T ss_pred HHHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHh
Confidence 999999999999999999999999999999998653
No 64
>KOG2903|consensus
Probab=99.21 E-value=2.2e-11 Score=87.36 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=105.4
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeE--Eeccc---CCCCCCc--------------------------hHHHhhCCC
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNY--EFVNL---FQKENLQ--------------------------PAFLEKNPM 51 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~--~~v~~---~~~~~~~--------------------------~~~~~~~p~ 51 (173)
+-||..-.||++.|..+++.+||++--. ..+.. ..++... +-|....|.
T Consensus 38 yhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~p~ 117 (319)
T KOG2903|consen 38 YHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIASPN 117 (319)
T ss_pred EEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcCCC
Confidence 5688888999999999999999985321 11111 0111100 112222332
Q ss_pred ----CccceEeeC---CeEeecccccccccc--ccC---C--------CCchhhHHHHHHHhhcccccceecccCCCCcc
Q psy13750 52 ----HSVPVLDDN---GFILWDRTSMVGPIL--YFK---N--------DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETL 111 (173)
Q Consensus 52 ----~~vP~L~~~---g~~l~eS~~I~~yl~--~~~---~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (173)
-+||||.|- ..+-.||..|++.+. +.. . -.+..++++++|.+|..+..-+ .+
T Consensus 118 Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~L~~~Ide~N~wvy~~INN--------GV 189 (319)
T KOG2903|consen 118 YTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSSLRAQIDETNSWVYDKINN--------GV 189 (319)
T ss_pred CCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHHHHHHHhhhhceecccccC--------ce
Confidence 259999874 345689999999998 222 1 1256789999999998833322 11
Q ss_pred ChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccCCc--eeccCCCchhhhhhhhhhcccC
Q psy13750 112 DTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWT--YIACDHITIADFSIVTTLTTLE 173 (173)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~T~aD~~~~~~l~~l~ 173 (173)
++..+. ..++.-+....++-+.|+.+|+.|+++. |+||+++|.||+.+++++-++|
T Consensus 190 -----Yk~GFA-~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD 247 (319)
T KOG2903|consen 190 -----YKCGFA-EKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFD 247 (319)
T ss_pred -----eeeccc-cccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeeh
Confidence 111111 3345556777888889999999999876 9999999999999999998875
No 65
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.18 E-value=5.8e-11 Score=70.90 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 10 GSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
.||+|.++.++|+.+|++|+.+..+- + ..+|.|++|+|+++|..+.||..|++||.
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n-------~---~~sp~gkLP~l~~~~~~i~d~~~Ii~~L~ 70 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNN-------P---WRSPTGKLPALLTSGTKISGPEKIIEYLR 70 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCC-------C---CCCCCCccCEEEECCEEecChHHHHHHHH
Confidence 57999999999999999998874321 1 23689999999999999999999999985
No 66
>PRK10638 glutaredoxin 3; Provisional
Probab=99.18 E-value=6.1e-11 Score=72.73 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=59.3
Q ss_pred Cc-eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccc
Q psy13750 1 MA-LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGP 73 (173)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~y 73 (173)
|+ +++|..+.||+|.+++.+|+.+|++|+.+.++.. ....+++.+.++..++|++..||..+.....+.++
T Consensus 1 m~~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~--~~~~~~l~~~~g~~~vP~i~~~g~~igG~~~~~~~ 72 (83)
T PRK10638 1 MANVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGD--AAKREEMIKRSGRTTVPQIFIDAQHIGGCDDLYAL 72 (83)
T ss_pred CCcEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEeCHHHHHHH
Confidence 55 8999999999999999999999999999888632 12346678889999999999999888887766554
No 67
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.10 E-value=3.9e-10 Score=67.22 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=59.1
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++++|..+.||+|.+++.+|+..|++|+.+.++-.. ....+.......++|++..||..+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~---~~~~~~~~~g~~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDI---TGRSLRAVTGAMTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCCh---hHHHHHHHhCCCCcCeEEECCEEEeCHHHHHHHhC
Confidence 478999999999999999999999999998876321 12344555667799999999999999999999874
No 68
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.05 E-value=5.5e-10 Score=72.94 Aligned_cols=75 Identities=36% Similarity=0.534 Sum_probs=57.7
Q ss_pred hhHHHHHHHhhcccccceecccCCCCccCh--hHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccCCceeccCCCchh
Q psy13750 84 VRSVKLCLLSLDLTVQLKQVTFAPGETLDT--AFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIA 161 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~a 161 (173)
+++++++|++|.. + .+.+ ...+.+... ..+...+....++.+.++.||+.|++++|++|+++|+|
T Consensus 2 ~~a~~~~wl~~~~-----------~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~a 68 (118)
T cd03177 2 KRAIVNQRLHFDS-----------G-TLYQRLRDYYYPILF-GGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIA 68 (118)
T ss_pred hHHHHHHHHHhhh-----------c-hHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHH
Confidence 5789999999887 4 4444 222333222 22356778889999999999999998999999999999
Q ss_pred hhhhhhhhcc
Q psy13750 162 DFSIVTTLTT 171 (173)
Q Consensus 162 D~~~~~~l~~ 171 (173)
|+++++++..
T Consensus 69 Di~l~~~~~~ 78 (118)
T cd03177 69 DLSLVATVST 78 (118)
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 69
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.04 E-value=4.2e-10 Score=73.26 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=57.5
Q ss_pred CchhhHHHHHHHhhcccccceecccCCCCccCh--hHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccCCceeccCCC
Q psy13750 81 SPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDT--AFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHI 158 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 158 (173)
++..++++++|+++.+ . .+.+ ......... ..+..+....++.+.+..+|++|++++|++|+++
T Consensus 3 ~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~ 68 (115)
T cd03196 3 DPAALKEMLALIAEND-----------N-EFKHHLDRYKYADRY--PEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKP 68 (115)
T ss_pred chHHHHHHHHHHHHcc-----------h-hhHHHHHhccchhhc--CcccHHHHHHHHHHHHHHHHHHHccCCccCCCCc
Confidence 4778999999999998 5 5544 111111111 1124667788999999999999999999999999
Q ss_pred chhhhhhhhhhc
Q psy13750 159 TIADFSIVTTLT 170 (173)
Q Consensus 159 T~aD~~~~~~l~ 170 (173)
|+||+++++++.
T Consensus 69 tlADi~l~~~l~ 80 (115)
T cd03196 69 SLADWAIFPFVR 80 (115)
T ss_pred cHHHHHHHHHHH
Confidence 999999998763
No 70
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.02 E-value=3.4e-10 Score=73.95 Aligned_cols=78 Identities=18% Similarity=0.126 Sum_probs=55.5
Q ss_pred CchhhHHHHHHHhhcccccceecccCCCCccChhH--HHHHhhhcc----------CCCCCHHHHHHHHHHHHHHHhhcc
Q psy13750 81 SPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAF--LKFRILFAK----------KKDIPEENIRRTRDVYSLVEKFLE 148 (173)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----------~~~~~~~~~~~~~~~l~~le~~L~ 148 (173)
++.+++++++|++|.. + .+.+.. ......... .+...+....++.+.++.+|++|+
T Consensus 4 ~~~~ra~~~~wl~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~ 71 (119)
T cd03189 4 DTAEYADYLYWLHFAE-----------G-SLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLA 71 (119)
T ss_pred CHHHHHHHHHHHHHHh-----------H-hhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHc
Confidence 4788999999999987 5 555421 111111111 112233456789999999999999
Q ss_pred CCceeccCCCchhhhhhhhhhc
Q psy13750 149 KWTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 149 ~~~~l~G~~~T~aD~~~~~~l~ 170 (173)
+++|++|+++|+||+++++.+.
T Consensus 72 ~~~~l~Gd~~t~ADi~l~~~~~ 93 (119)
T cd03189 72 KKGYFVGDKLTAADIMMSFPLE 93 (119)
T ss_pred cCCCCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999987654
No 71
>PRK10329 glutaredoxin-like protein; Provisional
Probab=99.01 E-value=2.1e-09 Score=65.50 Aligned_cols=61 Identities=16% Similarity=0.232 Sum_probs=48.2
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEe
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFIL 64 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l 64 (173)
|.+++|+.+.||+|.+++-+|..+|++|+.+.++-. ....+....++..++|+++.++..+
T Consensus 1 ~~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~---~~~~~~~~~~g~~~vPvv~i~~~~~ 61 (81)
T PRK10329 1 MRITIYTRNDCVQCHATKRAMESRGFDFEMINVDRV---PEAAETLRAQGFRQLPVVIAGDLSW 61 (81)
T ss_pred CEEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHHcCCCCcCEEEECCEEE
Confidence 789999999999999999999999999999988621 1112223446888999999877554
No 72
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.00 E-value=4.5e-10 Score=75.84 Aligned_cols=75 Identities=21% Similarity=0.238 Sum_probs=56.6
Q ss_pred hhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccCCceeccCCCchhh
Q psy13750 83 PVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIAD 162 (173)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD 162 (173)
..++++++|++|.. . .+.+. .+. ......++..+.....+.+.++.||++|++++|++|+++|+||
T Consensus 3 ~~~a~i~~~~~~~~-----------~-~~~~~-~~~-~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlAD 68 (142)
T cd03190 3 ELRSEIDELNEWIY-----------D-NINNG-VYK-AGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEAD 68 (142)
T ss_pred hHHHHHHHHHHHHH-----------H-HHhhH-HHH-HhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHH
Confidence 45788999999988 4 44331 111 1112334455677889999999999999999999999999999
Q ss_pred hhhhhhhcc
Q psy13750 163 FSIVTTLTT 171 (173)
Q Consensus 163 ~~~~~~l~~ 171 (173)
+++++.+.+
T Consensus 69 i~l~~~l~~ 77 (142)
T cd03190 69 IRLFTTLIR 77 (142)
T ss_pred HHHHHHHHH
Confidence 999988754
No 73
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=98.98 E-value=3.5e-10 Score=73.17 Aligned_cols=76 Identities=18% Similarity=0.197 Sum_probs=53.6
Q ss_pred hhHHHHHHHhhcccccceecccCCCCccChh--HHHHHhhhcc----CCCCCHHHHHHHHHHHHHHHhhccCCceeccCC
Q psy13750 84 VRSVKLCLLSLDLTVQLKQVTFAPGETLDTA--FLKFRILFAK----KKDIPEENIRRTRDVYSLVEKFLEKWTYIACDH 157 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 157 (173)
+++++++|+.|.. + .+.+. .......... .+...+....++.+.++.+|++|++++|++|++
T Consensus 2 ~ra~~~~w~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~ 69 (114)
T cd03188 2 ERARLLEWLNFLS-----------S-ELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDR 69 (114)
T ss_pred cHHHHHHHHHHHh-----------h-hhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCC
Confidence 5789999999987 4 44431 0111110000 112235567889999999999999899999999
Q ss_pred Cchhhhhhhhhhcc
Q psy13750 158 ITIADFSIVTTLTT 171 (173)
Q Consensus 158 ~T~aD~~~~~~l~~ 171 (173)
+|+|||++++.+..
T Consensus 70 ~t~aDi~~~~~~~~ 83 (114)
T cd03188 70 FSVADAYLFVVLRW 83 (114)
T ss_pred cchHHHHHHHHHHH
Confidence 99999999887654
No 74
>KOG3028|consensus
Probab=98.98 E-value=7.4e-09 Score=76.45 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=98.4
Q ss_pred CChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe-eCCeEeecccccccccc-----ccCCCC--
Q psy13750 10 GSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD-DNGFILWDRTSMVGPIL-----YFKNDS-- 81 (173)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~-~~g~~l~eS~~I~~yl~-----~~~~~~-- 81 (173)
.++-|..+.++++..+-|.+.+..+ .++ ..|.|++|+|+ ++|..++.-..|..||. |..+.+
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ss-------N~~---~s~sg~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~ 85 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSS-------NPW---RSPSGKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLS 85 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeec-------CCC---CCCCCCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHH
Confidence 4789999999999999777666543 112 36889999998 56789999999999998 433322
Q ss_pred chhhHHHHHHHhhcc--------------cccceecc---------cCCCCccChhHHHHHh------hhccCCCCCHHH
Q psy13750 82 PPVRSVKLCLLSLDL--------------TVQLKQVT---------FAPGETLDTAFLKFRI------LFAKKKDIPEEN 132 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~--------------~~~~~~~~---------~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 132 (173)
..+.+....|+++.. ..++.++. .+.. -+.+...-+.. ..+...+..++.
T Consensus 86 ~kq~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n-~~~p~~l~~qAk~rl~l~~g~~~~~e~~i 164 (313)
T KOG3028|consen 86 AKQLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLN-YILPGKLQRQAKERLQLTLGELTEREDQI 164 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchh-hcchhhhHHHHHHHHHHHhCCchhhHHHH
Confidence 345555555544332 22221111 0000 00110000000 001112345677
Q ss_pred HHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhcc
Q psy13750 133 IRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 133 ~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
.....+++..|+++|+.++|++|++||-.|+.+++++.-
T Consensus 165 ~~~Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~ 203 (313)
T KOG3028|consen 165 YKDASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAI 203 (313)
T ss_pred HHHHHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHH
Confidence 888899999999999999999999999999999998864
No 75
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.95 E-value=3.4e-09 Score=63.29 Aligned_cols=65 Identities=20% Similarity=0.188 Sum_probs=53.9
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTS 69 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~ 69 (173)
++||+.+.||+|.+++.+|+.+|++|+.+.++- .....+++.+.++..++|++..+|..+..-..
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~--~~~~~~el~~~~g~~~vP~v~i~~~~iGg~~~ 67 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREKGLPYVEINIDI--FPERKAELEERTGSSVVPQIFFNEKLVGGLTD 67 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHCCCceEEEECCC--CHHHHHHHHHHhCCCCcCEEEECCEEEeCHHH
Confidence 789999999999999999999999999987752 22335578888899999999988887765443
No 76
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.94 E-value=4.9e-10 Score=71.44 Aligned_cols=77 Identities=17% Similarity=0.177 Sum_probs=54.5
Q ss_pred hhHHHHHHHhhcccccceecccCCCCccChh--HHHHHhh----hccCCCCCHHHHHHHHHHHHHHHhhccCCceeccCC
Q psy13750 84 VRSVKLCLLSLDLTVQLKQVTFAPGETLDTA--FLKFRIL----FAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDH 157 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 157 (173)
+++++++|+.|.+ + .+.+. ....... ....++..+....++.+.++.||+.|++++|++|++
T Consensus 2 ~ra~~~~wl~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~ 69 (105)
T cd03179 2 ERAQVLRWLFFEQ-----------Y-SHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDA 69 (105)
T ss_pred cHHHHHHHHHHhh-----------c-ccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCC
Confidence 5789999999876 3 33220 0000000 112223446678889999999999999899999999
Q ss_pred Cchhhhhhhhhhccc
Q psy13750 158 ITIADFSIVTTLTTL 172 (173)
Q Consensus 158 ~T~aD~~~~~~l~~l 172 (173)
+|+||+++++.+..+
T Consensus 70 ~slaDi~~~~~~~~~ 84 (105)
T cd03179 70 LTIADIALAAYTHVA 84 (105)
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999887653
No 77
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.94 E-value=1.4e-09 Score=69.79 Aligned_cols=74 Identities=14% Similarity=0.119 Sum_probs=55.6
Q ss_pred chhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccCCceeccCCCchh
Q psy13750 82 PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIA 161 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~a 161 (173)
+.+|++++.|+.+.. + .+.+.. ..... ..++..+.....+.+.+..+|++|++++|++|+++|+|
T Consensus 1 p~~ra~~r~w~~~~~-----------~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~a 65 (107)
T cd03186 1 PVARARSRLLMHRIE-----------Q-DWYPLV--DTIEK-GRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLV 65 (107)
T ss_pred ChHHHHHHHHHHHHH-----------H-HHHHHH--HHHHh-CcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHH
Confidence 357899999999988 5 444411 11111 11333456778899999999999999999999999999
Q ss_pred hhhhhhhhc
Q psy13750 162 DFSIVTTLT 170 (173)
Q Consensus 162 D~~~~~~l~ 170 (173)
||++++.+.
T Consensus 66 Di~~~~~~~ 74 (107)
T cd03186 66 DCALAPLLW 74 (107)
T ss_pred HHHHHHHHH
Confidence 999998864
No 78
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.93 E-value=2.5e-09 Score=63.52 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=54.4
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEe--eccccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFIL--WDRTSMVGPI 74 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l--~eS~~I~~yl 74 (173)
++++|+.+.||+|.+++.+|+..|++|..+.++- .....+++.+.++...+|+++.+|..+ .++.+|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~--~~~~~~~~~~~~~~~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEK--DSAAREEVLKVLGQRGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccC--CHHHHHHHHHHhCCCcccEEEECCEEEeeCCHHHHHHHh
Confidence 4799999999999999999999999998876642 122234567778889999999888776 4445555444
No 79
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.93 E-value=1.1e-09 Score=70.79 Aligned_cols=76 Identities=22% Similarity=0.257 Sum_probs=55.2
Q ss_pred hhHHHHHHHhhcccccceecccCCCCccCh--hHHHHHhhh-c-cCCCCCHHHHHHHHHHHHHHHhhccCCceeccCCCc
Q psy13750 84 VRSVKLCLLSLDLTVQLKQVTFAPGETLDT--AFLKFRILF-A-KKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHIT 159 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T 159 (173)
+++++++|+.|.+ + .+.+ ......... . ..+...+....++.+.++.+|+.|++++|++|+++|
T Consensus 1 ~ra~~~~wl~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 68 (113)
T cd03178 1 ERYEVLQWLFFQM-----------G-GLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYS 68 (113)
T ss_pred ChHHHHHHHHHHH-----------c-cCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCC
Confidence 4788999999987 4 4444 111122111 1 123344567788999999999999999999999999
Q ss_pred hhhhhhhhhhcc
Q psy13750 160 IADFSIVTTLTT 171 (173)
Q Consensus 160 ~aD~~~~~~l~~ 171 (173)
+||+++++.+..
T Consensus 69 ~aDi~l~~~~~~ 80 (113)
T cd03178 69 IADIAIFPWVRR 80 (113)
T ss_pred eeeeeHHHHHHH
Confidence 999999887754
No 80
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.92 E-value=5e-09 Score=67.24 Aligned_cols=75 Identities=13% Similarity=0.193 Sum_probs=54.2
Q ss_pred hhHHHHHHHhhcccccceecccCCCCccCh-h-HHHHHhhhccCC----CCCHHHHHHHHHHHHHHHhhccCCceeccCC
Q psy13750 84 VRSVKLCLLSLDLTVQLKQVTFAPGETLDT-A-FLKFRILFAKKK----DIPEENIRRTRDVYSLVEKFLEKWTYIACDH 157 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~----~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~ 157 (173)
+|+++++|+.|.. + .+.+ . ..+.+....... ...+....++.+.++.+|++|++++|++|++
T Consensus 2 ~ra~~~~~l~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~ 69 (110)
T cd03180 2 ARARADRWMDWQT-----------S-TLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDR 69 (110)
T ss_pred chhHHHHHHHHHH-----------h-hcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC
Confidence 5788999999887 5 5555 1 112222211111 1234567899999999999999999999999
Q ss_pred Cchhhhhhhhhhc
Q psy13750 158 ITIADFSIVTTLT 170 (173)
Q Consensus 158 ~T~aD~~~~~~l~ 170 (173)
+|+||+++++++.
T Consensus 70 ~t~aDi~~~~~~~ 82 (110)
T cd03180 70 FTLADIPLGCSAY 82 (110)
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988763
No 81
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.92 E-value=3.6e-09 Score=62.44 Aligned_cols=70 Identities=14% Similarity=0.132 Sum_probs=57.6
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGP 73 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~y 73 (173)
++++|+.+.||+|++++.+|..+|++|+.+.++.. .....++.+.++..++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~--~~~~~~l~~~~~~~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILED--GELREELKELSGWPTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCC--HHHHHHHHHHhCCCCcCEEEECCEEEecHHHHHHh
Confidence 47899999999999999999999999998776522 22345667788889999999999999998777653
No 82
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=5.1e-09 Score=63.60 Aligned_cols=66 Identities=15% Similarity=0.122 Sum_probs=51.9
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHH-hhCCCCccceEeeCCeEeecc
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFL-EKNPMHSVPVLDDNGFILWDR 67 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~L~~~g~~l~eS 67 (173)
|++++|..+.||||.++.-+|..+|++|+++.++....+ ...++. ..++..+||++..||..+...
T Consensus 1 ~~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~-~~~~~~~~~~g~~tvP~I~i~~~~igg~ 67 (80)
T COG0695 1 ANVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPE-EAREMVKRGKGQRTVPQIFIGGKHVGGC 67 (80)
T ss_pred CCEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHH-HHHHHHHHhCCCCCcCEEEECCEEEeCc
Confidence 578999999999999999999999999999888643321 223443 455889999999888766544
No 83
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=98.89 E-value=1.1e-09 Score=71.31 Aligned_cols=78 Identities=18% Similarity=0.045 Sum_probs=55.4
Q ss_pred chhhHHHHHHHhhcccccceecccCCCCccCh--hHHHHHhhh--c------cCCCCCHHHHHHHHHHHHHHHhhccCCc
Q psy13750 82 PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDT--AFLKFRILF--A------KKKDIPEENIRRTRDVYSLVEKFLEKWT 151 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~------~~~~~~~~~~~~~~~~l~~le~~L~~~~ 151 (173)
+.+++++++|+.|.+ + .+.+ ...+..... . ..++..++...++.+.++.||+.|++++
T Consensus 2 ~~~ra~~~~w~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~ 69 (117)
T cd03182 2 PLERAQIEMWQRRAE-----------L-QGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSP 69 (117)
T ss_pred HHHHHHHHHHHHHHH-----------H-HHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 567899999999976 4 3333 111111110 0 0112345667889999999999999899
Q ss_pred eeccCCCchhhhhhhhhhcc
Q psy13750 152 YIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 152 ~l~G~~~T~aD~~~~~~l~~ 171 (173)
|++|+++|+|||++++.+..
T Consensus 70 ~l~gd~~t~aDi~l~~~~~~ 89 (117)
T cd03182 70 YVAGDRFTIADITAFVGLDF 89 (117)
T ss_pred cccCCCCCHHHHHHHHHhHH
Confidence 99999999999999987743
No 84
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.89 E-value=8.6e-09 Score=61.07 Aligned_cols=64 Identities=20% Similarity=0.142 Sum_probs=52.2
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDR 67 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS 67 (173)
.+++|+.+.||+|.+++.+|..+|++|..+.++. .....+++.+.+|.+++|+|+++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~--~~~~~~~~~~~~~~~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDE--DPEALEELKKLNGYRSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCC--CHHHHHHHHHHcCCcccCEEEECCEEEecC
Confidence 3789999999999999999999999999887753 222345677888999999999888766553
No 85
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=98.88 E-value=1.9e-09 Score=71.04 Aligned_cols=75 Identities=19% Similarity=0.126 Sum_probs=55.3
Q ss_pred chhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccCCceeccCCCchh
Q psy13750 82 PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIA 161 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~a 161 (173)
+.+++++++|+.|.+ + .+.+.. ..... ..++..+....++.+.++.||++|++++|++|+++|+|
T Consensus 1 p~~ra~~~~w~~~~~-----------~-~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~A 65 (126)
T cd03185 1 PYERAVARFWAAFID-----------D-KLFPAG--RKVLA-AKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYV 65 (126)
T ss_pred ChhHHHHHHHHHHHH-----------H-HHHHHH--HHHHc-cchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchH
Confidence 357899999999887 4 444311 01111 11234456788899999999999998999999999999
Q ss_pred hhhhhhhhcc
Q psy13750 162 DFSIVTTLTT 171 (173)
Q Consensus 162 D~~~~~~l~~ 171 (173)
|+++++.+..
T Consensus 66 Di~l~~~~~~ 75 (126)
T cd03185 66 DIALGSFLGW 75 (126)
T ss_pred HHHHHHHHHH
Confidence 9999987654
No 86
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.88 E-value=3.1e-09 Score=69.13 Aligned_cols=76 Identities=25% Similarity=0.279 Sum_probs=52.9
Q ss_pred hhHHHHHHHhhcccccceecccCCCCccChh--H-----HHHHhhh-ccCCCCCHHHHHHHHHHHHHHHhhccCCceecc
Q psy13750 84 VRSVKLCLLSLDLTVQLKQVTFAPGETLDTA--F-----LKFRILF-AKKKDIPEENIRRTRDVYSLVEKFLEKWTYIAC 155 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 155 (173)
+++++.+|+.|.. + .+.+. . .+.+... ...+...+.....+.+.++.||++|++++|++|
T Consensus 2 ~ra~~~~~l~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G 69 (118)
T cd03187 2 ERAIVEQWLEVES-----------H-QFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAG 69 (118)
T ss_pred chHHHHHHHHHHH-----------h-hcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCC
Confidence 5788999999877 4 44441 1 1111110 011122344677899999999999999999999
Q ss_pred CCCchhhhhhhhhhcc
Q psy13750 156 DHITIADFSIVTTLTT 171 (173)
Q Consensus 156 ~~~T~aD~~~~~~l~~ 171 (173)
+++|+|||++++++..
T Consensus 70 ~~~t~aDi~l~~~~~~ 85 (118)
T cd03187 70 DSFTLADLSHLPYLQY 85 (118)
T ss_pred CCccHHHHHHHHHHHH
Confidence 9999999999887643
No 87
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=98.86 E-value=2.6e-09 Score=62.97 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhccc
Q psy13750 129 PEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 129 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
.++..+++.+.++.||++|++++|++|++||+||+++++++..+
T Consensus 4 ~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~ 47 (69)
T PF13410_consen 4 VERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRL 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999998754
No 88
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.84 E-value=4.5e-09 Score=68.96 Aligned_cols=76 Identities=22% Similarity=0.197 Sum_probs=54.9
Q ss_pred hhHHHHHHHhhcccccceecccCCCCccCh--hHHHHHhhhc--cCCCCCHHHHHHHHHHHHHHHhhccCCceeccCCCc
Q psy13750 84 VRSVKLCLLSLDLTVQLKQVTFAPGETLDT--AFLKFRILFA--KKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHIT 159 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T 159 (173)
+++++++|+.|.+ + .+.+ ...+.+.... ......+....++.+.++.+|+.|++++|++|+++|
T Consensus 1 ~ra~~~~wl~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~s 68 (123)
T cd03181 1 EEAQVLQWVSFAN-----------T-ELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLT 68 (123)
T ss_pred ChHHHHHHHHHHH-----------h-hhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCcc
Confidence 4788999999988 5 5554 1122222111 112234556788999999999999999999999999
Q ss_pred hhhhhhhhhhcc
Q psy13750 160 IADFSIVTTLTT 171 (173)
Q Consensus 160 ~aD~~~~~~l~~ 171 (173)
+||+++++.+..
T Consensus 69 iaDi~l~~~~~~ 80 (123)
T cd03181 69 LADIFVAGALLL 80 (123)
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 89
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=98.83 E-value=4.7e-09 Score=68.74 Aligned_cols=77 Identities=16% Similarity=0.130 Sum_probs=52.0
Q ss_pred chhhHHHHHHHhhcccccceecccCCCCccChh--HHHHHhhh-c-c--CCCCCHHHHHHHHHHHHHHHhhcc--CCcee
Q psy13750 82 PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTA--FLKFRILF-A-K--KKDIPEENIRRTRDVYSLVEKFLE--KWTYI 153 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~-~--~~~~~~~~~~~~~~~l~~le~~L~--~~~~l 153 (173)
|.+++++++|+.|.. + .+.+. ........ . + .+...+.....+.+.++.+|++|+ +++|+
T Consensus 1 p~~ra~~~~w~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l 68 (121)
T cd03191 1 PKKRARVRALALIIA-----------C-DIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFC 68 (121)
T ss_pred ChhHHHHHHHHHHHH-----------c-cCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 457899999999987 4 44331 11111111 1 1 111223345678999999999997 45899
Q ss_pred ccCCCchhhhhhhhhhc
Q psy13750 154 ACDHITIADFSIVTTLT 170 (173)
Q Consensus 154 ~G~~~T~aD~~~~~~l~ 170 (173)
+|+++|+||+++++.+.
T Consensus 69 ~G~~~t~ADi~~~~~~~ 85 (121)
T cd03191 69 FGDEPTLADICLVPQVY 85 (121)
T ss_pred cCCcCCHHHHHHHHHHH
Confidence 99999999999998764
No 90
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.78 E-value=1.9e-08 Score=60.19 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=54.0
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCC-ccceEeeCCeEeecccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMH-SVPVLDDNGFILWDRTSMVGP 73 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~-~vP~L~~~g~~l~eS~~I~~y 73 (173)
++++|+.+.||+|.+++-+|+.+|++|+.+.++.. .....++....... .+|++..+|..+.+...+.++
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~--~~~~~~~~~~~~~~~~vP~v~i~g~~igg~~~~~~~ 71 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGD--PALREEMINRSGGRRTVPQIFIGDVHIGGCDDLYAL 71 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCC--HHHHHHHHHHhCCCCccCEEEECCEEEeChHHHHHH
Confidence 37899999999999999999999999999888632 11223444444444 899999999888887776654
No 91
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=98.73 E-value=1.1e-08 Score=64.36 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=47.8
Q ss_pred CCchhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccCCceeccCCCc
Q psy13750 80 DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEKWTYIACDHIT 159 (173)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T 159 (173)
.++.+.+++++|+++.. . .+. .....++.+.++.+|++|++++|++|+++|
T Consensus 13 ~~~~~~~~vd~~~d~~~-----------~-~l~-----------------~~~~~~~~~~l~~le~~L~~~~fl~Gd~~t 63 (96)
T cd03200 13 NAPNAATNIDSWVDTAI-----------F-QLA-----------------EGSSKEKAAVLRALNSALGRSPWLVGSEFT 63 (96)
T ss_pred CCchHHHHHHHHHHHHH-----------H-HHh-----------------cCCHHHHHHHHHHHHHHHcCCCccCCCCCC
Confidence 34778999999999654 2 110 012446668888999999999999999999
Q ss_pred hhhhhhhhhhc
Q psy13750 160 IADFSIVTTLT 170 (173)
Q Consensus 160 ~aD~~~~~~l~ 170 (173)
+|||++++.+.
T Consensus 64 iADi~l~~~l~ 74 (96)
T cd03200 64 VADIVSWCALL 74 (96)
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 92
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=98.71 E-value=2.3e-08 Score=65.85 Aligned_cols=71 Identities=18% Similarity=0.160 Sum_probs=54.1
Q ss_pred hhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhccC--CceeccCCCchh
Q psy13750 84 VRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLEK--WTYIACDHITIA 161 (173)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~T~a 161 (173)
+|++.+.|+.+.+ . .+.+. ...... ++..++....+.+.++.+|+.|++ ++|++|+++|+|
T Consensus 2 ~ra~~r~~~~~~~-----------~-~~~~~---~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~a 64 (124)
T cd03184 2 EKAQQKLLLERFS-----------K-VVSAF---YKLLGA--PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMV 64 (124)
T ss_pred hHHHHHHHHHHHh-----------h-hhHHH---HHHHhc--cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHH
Confidence 4788899988877 3 33331 121221 455677888999999999999985 899999999999
Q ss_pred hhhhhhhhcc
Q psy13750 162 DFSIVTTLTT 171 (173)
Q Consensus 162 D~~~~~~l~~ 171 (173)
|+++++++..
T Consensus 65 Di~~~~~~~~ 74 (124)
T cd03184 65 DYMIWPWFER 74 (124)
T ss_pred HHHhhHHHHH
Confidence 9999988754
No 93
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.71 E-value=1.3e-08 Score=64.47 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhc
Q psy13750 128 IPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 128 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~ 170 (173)
..++...++.+.++.+|++|++++|++|+++|+||+++++.+.
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~ 72 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVA 72 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHH
Confidence 4466788999999999999999999999999999999887763
No 94
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.69 E-value=7.1e-08 Score=57.87 Aligned_cols=65 Identities=15% Similarity=0.193 Sum_probs=50.8
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhC-CCCccceEe-eCCeEeeccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKN-PMHSVPVLD-DNGFILWDRT 68 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~-p~~~vP~L~-~~g~~l~eS~ 68 (173)
.+++|+.+.||+|++++.+|...|++|+.+.++ ........+.+.+ +...+|+++ ++|..+.++.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~--~~~~~~~~~~~~~~~~~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIE--EDEGAADRVVSVNNGNMTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCc--CCHhHHHHHHHHhCCCceeCEEEECCCeEecCCC
Confidence 378999999999999999999999999887664 2222334556666 888999996 6777777654
No 95
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.67 E-value=3.2e-08 Score=64.26 Aligned_cols=77 Identities=16% Similarity=0.091 Sum_probs=55.4
Q ss_pred chhhHHHHHHHhhcccccceecccCCCCccChhHHHHH-hh--h-ccCCCCCHHHHHHHHHHHHHHHhhcc-CCceeccC
Q psy13750 82 PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFR-IL--F-AKKKDIPEENIRRTRDVYSLVEKFLE-KWTYIACD 156 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~-~~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~ 156 (173)
+.+++++++|+.|.+ + .+.+.....+ .. . .......+.....+.+.++.+|..|+ +++||+|
T Consensus 1 ~~~ra~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G- 67 (114)
T cd03195 1 PRQRARARQVQAWLR-----------S-DLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG- 67 (114)
T ss_pred CHhhHHHHHHHHHHH-----------h-hHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-
Confidence 457899999999998 6 5554221111 10 1 11123557788899999999999995 5589999
Q ss_pred CCchhhhhhhhhhcc
Q psy13750 157 HITIADFSIVTTLTT 171 (173)
Q Consensus 157 ~~T~aD~~~~~~l~~ 171 (173)
++|+||+++++.+..
T Consensus 68 ~fSiAD~~l~~~~~~ 82 (114)
T cd03195 68 EWCIADTDLALMLNR 82 (114)
T ss_pred CccHHHHHHHHHHHH
Confidence 599999999987754
No 96
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.62 E-value=1.4e-07 Score=56.12 Aligned_cols=57 Identities=14% Similarity=0.231 Sum_probs=43.7
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGF 62 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~ 62 (173)
+++|+.+.||+|.+++-+|..+|++|+.+.++-. ....+.++..+...||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~---~~~~~~~~~~g~~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQ---PEAIDYVKAQGFRQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCC---HHHHHHHHHcCCcccCEEEECCC
Confidence 5799999999999999999999999999887521 11122334456779999987553
No 97
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.62 E-value=1.1e-07 Score=54.52 Aligned_cols=60 Identities=15% Similarity=0.202 Sum_probs=48.2
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFIL 64 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l 64 (173)
+++|+.+.||+|.+++-+|+..|++|+.+.++... ....++.+.....++|++..||..+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~~~g~~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKELSGVRTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHHHHSSSSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHHHcCCCccCEEEECCEEC
Confidence 57999999999999999999999999999886421 2234555555678999999888654
No 98
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.61 E-value=9.3e-08 Score=57.86 Aligned_cols=69 Identities=12% Similarity=0.095 Sum_probs=54.4
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGP 73 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~y 73 (173)
+++|+.+.||+|.+++-+|+.+|++|+.+.++... ....++.+......+|++..+|..+.+...+.++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~--~~~~~~~~~~g~~~vP~i~i~g~~igg~~~~~~~ 69 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDP--ALRDEMMQRSGRRTVPQIFIGDVHVGGCDDLYAL 69 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCH--HHHHHHHHHhCCCCcCEEEECCEEEcChHHHHHH
Confidence 57999999999999999999999999999886321 2234566666678999999999888776655443
No 99
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.61 E-value=4.5e-08 Score=60.49 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhcc
Q psy13750 131 ENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 131 ~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
+...++.+.++.+|+.|++++|++|+++|+||+++++.+..
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~ 59 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLAS 59 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999988653
No 100
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.60 E-value=3.3e-08 Score=62.84 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhcc
Q psy13750 127 DIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 127 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
+..+....++.+.++.||++|++++|++|+++|+||+++++.+..
T Consensus 26 ~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~ 70 (103)
T cd03207 26 PARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGW 70 (103)
T ss_pred chhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHH
Confidence 345666788999999999999999999999999999999887643
No 101
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.59 E-value=4.2e-08 Score=64.67 Aligned_cols=41 Identities=27% Similarity=0.468 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhh-ccCCceeccCCCchhhhhhhhhhc
Q psy13750 130 EENIRRTRDVYSLVEKF-LEKWTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 130 ~~~~~~~~~~l~~le~~-L~~~~~l~G~~~T~aD~~~~~~l~ 170 (173)
+...+.+.+.++.+|++ +++++|++|+++|+||+++++.+.
T Consensus 44 ~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~ 85 (126)
T cd03183 44 KKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAVCEIM 85 (126)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHH
Confidence 45567889999999997 555799999999999999988764
No 102
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.57 E-value=1.3e-07 Score=58.09 Aligned_cols=73 Identities=10% Similarity=0.025 Sum_probs=56.9
Q ss_pred CceEEeccCCChhHHHHHHHHHH-----cCCceeEEecccCCCCCCchHHHhhCC--CCccceEeeCCeEeecccccccc
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRA-----LGLEVNYEFVNLFQKENLQPAFLEKNP--MHSVPVLDDNGFILWDRTSMVGP 73 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p--~~~vP~L~~~g~~l~eS~~I~~y 73 (173)
|.+++|+.+.||+|.+++-+|+. .|++|+.+.++-.. ....++..... ...+|++..||..+.....|.++
T Consensus 1 m~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~--~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~ 78 (85)
T PRK11200 1 MFVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEG--ISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAY 78 (85)
T ss_pred CEEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCCh--HHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHH
Confidence 78999999999999999999999 89999998876211 11233433332 25799999999999998888887
Q ss_pred cc
Q psy13750 74 IL 75 (173)
Q Consensus 74 l~ 75 (173)
+.
T Consensus 79 ~~ 80 (85)
T PRK11200 79 VK 80 (85)
T ss_pred HH
Confidence 75
No 103
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=98.57 E-value=5.5e-08 Score=60.80 Aligned_cols=44 Identities=27% Similarity=0.365 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhcc
Q psy13750 128 IPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 128 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
..+....++.+.++.+|+.|++++|++|+++|+||+++++.+..
T Consensus 25 ~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~ 68 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDW 68 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHH
Confidence 44667889999999999999999999999999999999998764
No 104
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.57 E-value=2.4e-08 Score=62.64 Aligned_cols=46 Identities=26% Similarity=0.392 Sum_probs=40.4
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhccc
Q psy13750 127 DIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 127 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
+..+...+++.+.++.||++|++++|++|+++|+||+.+++++..+
T Consensus 32 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~ 77 (100)
T cd00299 32 AALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARL 77 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHH
Confidence 3456678899999999999999999999999999999999988653
No 105
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=98.56 E-value=1.2e-07 Score=63.13 Aligned_cols=48 Identities=15% Similarity=0.316 Sum_probs=42.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHHHhhccC----------------CceeccCCCchhhhhhhhhhc
Q psy13750 123 AKKKDIPEENIRRTRDVYSLVEKFLEK----------------WTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~le~~L~~----------------~~~l~G~~~T~aD~~~~~~l~ 170 (173)
...++..+....++.+.|+.||++|++ ++||+|+++|+|||.+++.+.
T Consensus 21 ~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~ 84 (134)
T cd03198 21 NSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLH 84 (134)
T ss_pred CCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHH
Confidence 344566788889999999999999986 789999999999999999875
No 106
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.54 E-value=2.6e-07 Score=58.46 Aligned_cols=71 Identities=10% Similarity=0.097 Sum_probs=54.4
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCC-CchHHHhhCCCCccceEeeCCeEeeccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKEN-LQPAFLEKNPMHSVPVLDDNGFILWDRTSMVG 72 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~ 72 (173)
++++|..+.||+|.+++-+|...|++|+.+.++..+... ....+.+.+...++|++..+|..+.....+..
T Consensus 9 ~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 9 AVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 589999999999999999999999999998887432211 12234556677899999988988777655544
No 107
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.52 E-value=1e-07 Score=63.01 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhcc
Q psy13750 126 KDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 126 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
....++..+.+++.++.|++.|++++|++|++||.+|+++++++..
T Consensus 52 r~~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~ 97 (126)
T cd03211 52 DKTLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFT 97 (126)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999999999998754
No 108
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.52 E-value=7e-08 Score=60.99 Aligned_cols=45 Identities=18% Similarity=0.268 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCc--eeccCCCchhhhhhhhhhcc
Q psy13750 127 DIPEENIRRTRDVYSLVEKFLEKWT--YIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 127 ~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~T~aD~~~~~~l~~ 171 (173)
...+....++.+.+..++++|+++. |++|++||+||++++++|..
T Consensus 31 ~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~ 77 (99)
T PF14497_consen 31 ASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLAS 77 (99)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHH
T ss_pred hhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHH
Confidence 4456778899999999999999877 99999999999999998854
No 109
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.51 E-value=2.5e-07 Score=56.25 Aligned_cols=74 Identities=11% Similarity=0.129 Sum_probs=57.9
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCC-CCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKE-NLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
++++|+.+.||+|.+++-+|...+++|+.+.++..... .....+.+.+...++|++..+|..+.++..|.++..
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~g~~igg~~~~~~~~~ 75 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIGGKFIGGCDDLMALHK 75 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHHH
Confidence 47899999999999999999999999999888753221 112234456667789999999999999888776654
No 110
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.48 E-value=9.6e-08 Score=60.76 Aligned_cols=44 Identities=23% Similarity=0.224 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHHhhccC--CceeccCCCchhhhhhhhhhcc
Q psy13750 128 IPEENIRRTRDVYSLVEKFLEK--WTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 128 ~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
..+.....+.+.+..||++|++ ++|++|+++|+||+++++.+..
T Consensus 36 ~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~ 81 (104)
T cd03192 36 KKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDY 81 (104)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHH
Confidence 3455678889999999999987 8999999999999999988754
No 111
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.42 E-value=3.2e-07 Score=60.44 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=39.2
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhc
Q psy13750 127 DIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 127 ~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~ 170 (173)
...+...+++++.++.+|++|++++|++|+++|+||+++++++.
T Consensus 54 ~~~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~ 97 (124)
T cd03202 54 AGREAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQ 97 (124)
T ss_pred cchHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHH
Confidence 34567788999999999999999999999999999999988764
No 112
>PHA03050 glutaredoxin; Provisional
Probab=98.42 E-value=8.2e-07 Score=57.01 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=53.3
Q ss_pred eEEeccCCChhHHHHHHHHHHcCC---ceeEEecccCC-CCCCchHHHhhCCCCccceEeeCCeEeecccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGL---EVNYEFVNLFQ-KENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMV 71 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~-~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~ 71 (173)
+++|..+.||||.+++-+|...|+ +|+.+.++-.. ......++.+.+...+||.+..+|..+.....+.
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~g~~iGG~ddl~ 87 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFGKTSIGGYSDLL 87 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEECCEEEeChHHHH
Confidence 789999999999999999999999 78888876311 1112345667777789999999998877765543
No 113
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.40 E-value=2.3e-07 Score=59.80 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhccCC----------ceeccCCCchhhhhhhhhhcc
Q psy13750 125 KKDIPEENIRRTRDVYSLVEKFLEKW----------TYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~le~~L~~~----------~~l~G~~~T~aD~~~~~~l~~ 171 (173)
+.+..++...++.+.++.||++|+++ +|++|+++|+|||++++.+..
T Consensus 23 ~~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~ 79 (111)
T cd03204 23 NVEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHR 79 (111)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHH
Confidence 34456778899999999999999765 499999999999999988754
No 114
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.33 E-value=1.3e-06 Score=53.86 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=53.3
Q ss_pred eEEeccCCChhHHHHHHHHHHcC-----CceeEEecccCCCCCCchHHHhhCCC--CccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALG-----LEVNYEFVNLFQKENLQPAFLEKNPM--HSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~--~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
+++|+.+.||+|.+++-+|+.++ ++|+.+.++-. .....++...... ..||++..||..+.++..|.+++.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~--~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~ 79 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAE--GISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVK 79 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCC--HHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHH
Confidence 58999999999999999999985 56777666421 1112344444333 589999999999999999988876
No 115
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.30 E-value=7e-07 Score=59.86 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhc
Q psy13750 128 IPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 128 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~ 170 (173)
..++..+++.+.++.|++.|++++|++|+++|.+|+.+++++.
T Consensus 61 ~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~ 103 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLA 103 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHH
Confidence 4567788899999999999999999999999999999998864
No 116
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.30 E-value=6.7e-07 Score=58.69 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHhhccC-CceeccCCCchhhhhhhhhhcc
Q psy13750 130 EENIRRTRDVYSLVEKFLEK-WTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 130 ~~~~~~~~~~l~~le~~L~~-~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
++....+.+.+..||++|++ ++|++|+++|+||+++++.+.+
T Consensus 29 ~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~ 71 (121)
T cd03201 29 DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYH 71 (121)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHH
Confidence 56678899999999999985 7999999999999999986543
No 117
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.29 E-value=7.9e-07 Score=58.24 Aligned_cols=44 Identities=25% Similarity=0.420 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhcc
Q psy13750 128 IPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 128 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
..+.....+.+.+..||++|++++|++|+++|+||+++++.+..
T Consensus 32 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~ 75 (121)
T cd03209 32 LKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQ 75 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHH
Confidence 34556788899999999999989999999999999999877643
No 118
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=98.28 E-value=1.7e-06 Score=56.59 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=45.4
Q ss_pred chhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHHHHHHHHHHHHHhhcc---CCceeccCCC
Q psy13750 82 PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENIRRTRDVYSLVEKFLE---KWTYIACDHI 158 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~ 158 (173)
+..|+.+++|+.|.. .+.. ..+.+.. .+. . ...+.+.++.||+.|+ +++|++| ++
T Consensus 2 ~~~ra~~~~~~~~~~-------------~~~~-~~~~~~~-~~~--~----~~~~~~~l~~Le~~L~~~~~~~fl~G-~~ 59 (120)
T cd03203 2 PAKREFADELLAYTD-------------AFTK-ALYSSLI-KGD--P----SAEAAAALDYIENALSKFDDGPFFLG-QF 59 (120)
T ss_pred HHHHHHHHHHHHHHH-------------HHHH-HHHHHHh-cCC--c----hHHHHHHHHHHHHHHHhcCCCCCcCC-Cc
Confidence 567899999999833 2211 1222222 121 1 2245667788888776 4899999 99
Q ss_pred chhhhhhhhhhcc
Q psy13750 159 TIADFSIVTTLTT 171 (173)
Q Consensus 159 T~aD~~~~~~l~~ 171 (173)
|+||+++++++.+
T Consensus 60 tlADi~l~~~~~~ 72 (120)
T cd03203 60 SLVDIAYVPFIER 72 (120)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999988754
No 119
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.25 E-value=7.5e-07 Score=58.80 Aligned_cols=41 Identities=27% Similarity=0.461 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHhhccC---CceeccCCCchhhhhhhhhhc
Q psy13750 130 EENIRRTRDVYSLVEKFLEK---WTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 130 ~~~~~~~~~~l~~le~~L~~---~~~l~G~~~T~aD~~~~~~l~ 170 (173)
+.....+.+.+..||+.|++ ++|++|+++|+||+++++.+.
T Consensus 34 ~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~ 77 (126)
T cd03210 34 DDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLD 77 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHH
Confidence 45566788999999999974 589999999999999988764
No 120
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.25 E-value=2.1e-06 Score=50.91 Aligned_cols=56 Identities=20% Similarity=0.170 Sum_probs=47.9
Q ss_pred CChhHHHHHHHHHHcCCc---eeEEecccCCCCCCchHHHhhCCCCccceEee-CCeEeecccccccccc
Q psy13750 10 GSPPVRATQLCIRALGLE---VNYEFVNLFQKENLQPAFLEKNPMHSVPVLDD-NGFILWDRTSMVGPIL 75 (173)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~-~g~~l~eS~~I~~yl~ 75 (173)
.+|-|.++.++|+..+.+ ++.+..+ .+ ..+|.|++|+|.+ ++..+.+-..|++||.
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~-------n~---~~Sptg~LP~L~~~~~~~vsg~~~Iv~yL~ 72 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSN-------NP---WLSPTGELPALIDSGGTWVSGFRNIVEYLR 72 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcC-------CC---CcCCCCCCCEEEECCCcEEECHHHHHHhhC
Confidence 689999999999999999 8777654 12 2479999999998 8999999999999983
No 121
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.17 E-value=5.9e-06 Score=52.02 Aligned_cols=68 Identities=15% Similarity=0.137 Sum_probs=49.9
Q ss_pred eEEecc-----CCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeeccccccc
Q psy13750 3 LTLYYV-----HGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVG 72 (173)
Q Consensus 3 ~~Ly~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~ 72 (173)
+.+|.. +.||||.+++-+|..+|++|+.+.++- ......++.+.+....+|.+..+|..+.....+.+
T Consensus 14 Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~--~~~~~~~l~~~tg~~tvP~vfi~g~~iGG~ddl~~ 86 (97)
T TIGR00365 14 VVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLE--DPEIRQGIKEYSNWPTIPQLYVKGEFVGGCDIIME 86 (97)
T ss_pred EEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCC--CHHHHHHHHHHhCCCCCCEEEECCEEEeChHHHHH
Confidence 456643 789999999999999999999887741 11223344566777799999988888776655443
No 122
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.16 E-value=2e-06 Score=57.68 Aligned_cols=39 Identities=13% Similarity=0.332 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhcc--CCceeccCCCchhhhhhhhhhcc
Q psy13750 133 IRRTRDVYSLVEKFLE--KWTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 133 ~~~~~~~l~~le~~L~--~~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
...+.+.+..||+.|+ +++|++|+++|+||+.+++.+..
T Consensus 41 ~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~ 81 (137)
T cd03208 41 EKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILM 81 (137)
T ss_pred HHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHH
Confidence 3466899999999998 67899999999999999987754
No 123
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.15 E-value=5.1e-06 Score=50.53 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=54.4
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCc--eeEEecccCCCCC-CchHHHhhCCCCccceEeeCCeEeeccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLE--VNYEFVNLFQKEN-LQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPI 74 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~--~~~~~v~~~~~~~-~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl 74 (173)
+++|+.+.||+|.+++-+|...+++ |+...++...... ....+.+.....++|++..+|..+.++..+.++.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~g~~igg~~~~~~~~ 75 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFINGKFIGGCSDLLALY 75 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEECCEEEcCHHHHHHHH
Confidence 4789999999999999999999999 8888876432111 1122445566678999999999998887776654
No 124
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.13 E-value=7.7e-06 Score=50.75 Aligned_cols=69 Identities=14% Similarity=0.088 Sum_probs=51.8
Q ss_pred ceEEecc-----CCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeeccccccc
Q psy13750 2 ALTLYYV-----HGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVG 72 (173)
Q Consensus 2 ~~~Ly~~-----~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~ 72 (173)
++.+|.. +.||+|.+++-+|+..|++|+.+.++-. .....+..+.+...++|++..+|..+.+...+.+
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~~~~~l~~~~g~~tvP~vfi~g~~iGG~~~l~~ 82 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EEVRQGLKEYSNWPTFPQLYVNGELVGGCDIVKE 82 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HHHHHHHHHHhCCCCCCEEEECCEEEeCHHHHHH
Confidence 4566754 6899999999999999999999987521 1223344566677799999988988877666554
No 125
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.09 E-value=4.7e-06 Score=54.04 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhc---cCCceeccCCCchhhhhhhhhhcc
Q psy13750 127 DIPEENIRRTRDVYSLVEKFL---EKWTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 127 ~~~~~~~~~~~~~l~~le~~L---~~~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
...+.....+.+.++.+|..+ ++++|++|+ +|+||+++++.+..
T Consensus 37 ~~~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~ 83 (114)
T cd03194 37 ELSEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTR 83 (114)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHH
Confidence 345666777777777777766 467899999 99999999987653
No 126
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.79 E-value=9.2e-05 Score=58.49 Aligned_cols=69 Identities=12% Similarity=0.125 Sum_probs=51.3
Q ss_pred Cc-eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHH-h--------hCCCCccceEeeCCeEeeccccc
Q psy13750 1 MA-LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFL-E--------KNPMHSVPVLDDNGFILWDRTSM 70 (173)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~--------~~p~~~vP~L~~~g~~l~eS~~I 70 (173)
|. +++|+.+.||+|.++.-+|...||+|+.+.++-. . ...++. . ......||++..||..+..-...
T Consensus 1 m~~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~--~-~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l 77 (410)
T PRK12759 1 MVEVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDD--V-KRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNL 77 (410)
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCC--h-hHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHH
Confidence 54 8999999999999999999999999999888621 1 111221 1 23566899999888877776555
Q ss_pred cc
Q psy13750 71 VG 72 (173)
Q Consensus 71 ~~ 72 (173)
..
T Consensus 78 ~~ 79 (410)
T PRK12759 78 MA 79 (410)
T ss_pred HH
Confidence 44
No 127
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=97.74 E-value=4.6e-05 Score=48.64 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=51.0
Q ss_pred chhhHHHHHHHhhcccccceecccCCCCccChhHHHHH---hhh-ccCCCCCHHHHHHHHHHHHHHHhhccC-CceeccC
Q psy13750 82 PPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFR---ILF-AKKKDIPEENIRRTRDVYSLVEKFLEK-WTYIACD 156 (173)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~ 156 (173)
..+|+++++.-.|.. + .+.+.+.-+| .+. .+.....+.....+.+++...+..|.+ ++||+|+
T Consensus 2 ~~~RArAR~vqAwlr-----------S-df~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe 69 (117)
T PF14834_consen 2 RQERARARQVQAWLR-----------S-DFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE 69 (117)
T ss_dssp HHHHHHHHHHHHHHH-----------H-S-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS
T ss_pred HHHHHHHHHHHHHHH-----------c-ccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc
Confidence 457888888888887 6 6666222111 111 123456788899999999999998875 7999996
Q ss_pred CCchhhhhhhhhhccc
Q psy13750 157 HITIADFSIVTTLTTL 172 (173)
Q Consensus 157 ~~T~aD~~~~~~l~~l 172 (173)
.||||..+++++.+|
T Consensus 70 -wsIAD~dlA~ml~Rl 84 (117)
T PF14834_consen 70 -WSIADADLALMLNRL 84 (117)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHH
Confidence 999999999998876
No 128
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=97.73 E-value=5.6e-05 Score=50.99 Aligned_cols=43 Identities=12% Similarity=0.136 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhcc-CCceeccCCCchhhhhhhhhhccc
Q psy13750 130 EENIRRTRDVYSLVEKFLE-KWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 130 ~~~~~~~~~~l~~le~~L~-~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
+...+.+...++.+=+.++ +++|+.|++||+||+++++++..+
T Consensus 78 ~D~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~ 121 (149)
T cd03197 78 DDVREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSV 121 (149)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHH
Confidence 4456666666666655554 468999999999999999998754
No 129
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.72 E-value=2e-05 Score=49.51 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhc
Q psy13750 126 KDIPEENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLT 170 (173)
Q Consensus 126 ~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~ 170 (173)
+...+....++.+.++.+|++|++++| +++|+||+++++.+.
T Consensus 32 ~~~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~ 73 (98)
T cd03205 32 QPWLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALG 73 (98)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHH
Confidence 345677789999999999999998898 899999999988774
No 130
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.70 E-value=0.00011 Score=49.80 Aligned_cols=69 Identities=12% Similarity=0.090 Sum_probs=52.1
Q ss_pred eEEeccC------CChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCC----CCccceEeeCCeEeeccccccc
Q psy13750 3 LTLYYVH------GSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNP----MHSVPVLDDNGFILWDRTSMVG 72 (173)
Q Consensus 3 ~~Ly~~~------~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~vP~L~~~g~~l~eS~~I~~ 72 (173)
+.||..+ ++|+|.+++.+|+.+|++|+++.|+... ....++.+... ...+|.+..+|..|.....+.+
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~--~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~ 79 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDS--GFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLR 79 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCH--HHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHH
Confidence 5789888 8999999999999999999998886421 22334444433 3689999988988877666655
Q ss_pred c
Q psy13750 73 P 73 (173)
Q Consensus 73 y 73 (173)
.
T Consensus 80 L 80 (147)
T cd03031 80 L 80 (147)
T ss_pred H
Confidence 3
No 131
>PRK10824 glutaredoxin-4; Provisional
Probab=97.41 E-value=0.00043 Score=44.80 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=48.9
Q ss_pred CCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccc
Q psy13750 9 HGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGP 73 (173)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~y 73 (173)
|.||||.++.-+|...|++|..+.++-. ......+...+...+||-+..+|..|..+..+...
T Consensus 28 p~Cpyc~~ak~lL~~~~i~~~~idi~~d--~~~~~~l~~~sg~~TVPQIFI~G~~IGG~ddl~~l 90 (115)
T PRK10824 28 PSCGFSAQAVQALSACGERFAYVDILQN--PDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEM 90 (115)
T ss_pred CCCchHHHHHHHHHHcCCCceEEEecCC--HHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHHH
Confidence 5899999999999999999998877521 12234455667778999999999988887666554
No 132
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.30 E-value=0.0021 Score=37.17 Aligned_cols=58 Identities=12% Similarity=0.170 Sum_probs=40.5
Q ss_pred ceEEeccCCChhHHHHHHHHHHc-----CCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEee
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRAL-----GLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILW 65 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 65 (173)
.+++|+.+.||+|.+++-.|+.. ++++..+.++ ..++.........+|++..+|..++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~------~~~~l~~~~~i~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA------EFPDLADEYGVMSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc------cCHhHHHHcCCcccCEEEECCEEEE
Confidence 36899999999999998888865 4666555443 1234444444557999988776654
No 133
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=97.22 E-value=0.00056 Score=45.47 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=30.4
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.|++|.+++-+|...|++|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 89999999999999999999999999998874
No 134
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00061 Score=44.30 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=31.7
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
|++++|+.|.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 ~~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 1 MMITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred CeEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 7899999999999999999999999999987663
No 135
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=97.16 E-value=0.00076 Score=43.75 Aligned_cols=32 Identities=9% Similarity=0.134 Sum_probs=30.2
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.|+.|.+++-+|+..|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 89999999999999999999999999998774
No 136
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=97.16 E-value=0.00064 Score=43.82 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=30.0
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.||+|++++-.|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIV 32 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEeccc
Confidence 58999999999999999999999999998775
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=97.15 E-value=0.0013 Score=47.02 Aligned_cols=62 Identities=11% Similarity=0.022 Sum_probs=47.5
Q ss_pred CCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeeccccccc
Q psy13750 9 HGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVG 72 (173)
Q Consensus 9 ~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~ 72 (173)
|.||+|.++.-+|...|++|+...++ ........+.+.+....+|.+..+|..+.....+.+
T Consensus 126 p~C~~C~~~k~~L~~~~i~y~~~DI~--~d~~~~~~l~~~sg~~TvPqVfI~G~~IGG~d~l~~ 187 (204)
T PTZ00062 126 PFCRFSNAVVNMLNSSGVKYETYNIF--EDPDLREELKVYSNWPTYPQLYVNGELIGGHDIIKE 187 (204)
T ss_pred CCChhHHHHHHHHHHcCCCEEEEEcC--CCHHHHHHHHHHhCCCCCCeEEECCEEEcChHHHHH
Confidence 68999999999999999999987775 222223445566667789999999988877666554
No 138
>KOG1752|consensus
Probab=97.15 E-value=0.0015 Score=41.46 Aligned_cols=71 Identities=11% Similarity=0.150 Sum_probs=53.5
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCC-CCchHHHhhCCCCccceEeeCCeEeecccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKE-NLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGP 73 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~-~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~y 73 (173)
+.+|.-+.||+|.+++-+|...|+++..+++|-.... .-...+.+.....+||.+..+|..+..+..++++
T Consensus 16 VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI~Gk~iGG~~dl~~l 87 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFIGGKFIGGASDLMAL 87 (104)
T ss_pred EEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEECCEEEcCHHHHHHH
Confidence 5678888999999999999999999999998754221 1122234556667999999999888777666544
No 139
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=97.05 E-value=0.00098 Score=42.45 Aligned_cols=32 Identities=16% Similarity=0.185 Sum_probs=29.9
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.||+|.+++-+|+.+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 57999999999999999999999999998875
No 140
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.95 E-value=0.0016 Score=43.33 Aligned_cols=32 Identities=9% Similarity=0.233 Sum_probs=30.5
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.|+.|++++-.|+..|++|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~ 33 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLG 33 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC
Confidence 89999999999999999999999999998875
No 141
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.85 E-value=0.002 Score=42.82 Aligned_cols=32 Identities=9% Similarity=0.176 Sum_probs=30.4
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.|+.|++++-+|+.+|++|+.+.+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~ 33 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIV 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEee
Confidence 89999999999999999999999999998775
No 142
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.73 E-value=0.017 Score=34.41 Aligned_cols=56 Identities=21% Similarity=0.405 Sum_probs=40.2
Q ss_pred CceEEeccCCChhHHHH----HHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEe
Q psy13750 1 MALTLYYVHGSPPVRAT----QLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFIL 64 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l 64 (173)
|.+++|. +.||.|..+ .-+++..|.+++.+.++- .++..+ .....+|+++.+|..+
T Consensus 1 m~i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~------~~~a~~-~~v~~vPti~i~G~~~ 60 (76)
T TIGR00412 1 MKIQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD------MNEILE-AGVTATPGVAVDGELV 60 (76)
T ss_pred CEEEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC------HHHHHH-cCCCcCCEEEECCEEE
Confidence 6678887 999999987 668888888888887751 122222 2356899998777655
No 143
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.70 E-value=0.0029 Score=41.16 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=29.6
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.||+|++++-+|+..|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 57999999999999999999999999988774
No 144
>PRK10026 arsenate reductase; Provisional
Probab=96.67 E-value=0.0033 Score=42.23 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=31.3
Q ss_pred Cc-eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 1 MA-LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 1 M~-~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
|+ +++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 m~~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MSNITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 64 99999999999999999999999999998764
No 145
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.50 E-value=0.0047 Score=39.37 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=29.9
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.|+.|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 57999999999999999999999999998774
No 146
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.47 E-value=0.012 Score=35.53 Aligned_cols=55 Identities=25% Similarity=0.375 Sum_probs=38.8
Q ss_pred ceEEeccCCChhHHHHHHHHHHcC--CceeEEecccCCCCCCchHHHhhCCCCccceEeeCC
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALG--LEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNG 61 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~g--i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g 61 (173)
+++||+-+.|+.|..++-.|+... .+++...||.. ..+++...-. ..+|||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~----~d~~l~~~Y~-~~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDID----EDPELFEKYG-YRIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETT----TTHHHHHHSC-TSTSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECC----CCHHHHHHhc-CCCCEEEEcC
Confidence 478999999999999999999644 55667777754 2344444432 3799998766
No 147
>PRK10853 putative reductase; Provisional
Probab=96.45 E-value=0.0054 Score=39.99 Aligned_cols=32 Identities=16% Similarity=0.371 Sum_probs=30.0
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 89999999999999999999999999988763
No 148
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=96.44 E-value=0.0053 Score=39.70 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=29.9
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.|+.|++++-+|+..|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 68999999999999999999999999998764
No 149
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=96.32 E-value=0.017 Score=35.90 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=46.1
Q ss_pred eEEeccCCCh------hHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCC----CCccceEeeCCeEeeccccc
Q psy13750 3 LTLYYVHGSP------PVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNP----MHSVPVLDDNGFILWDRTSM 70 (173)
Q Consensus 3 ~~Ly~~~~s~------~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p----~~~vP~L~~~g~~l~eS~~I 70 (173)
+++|....++ .|++++.+|.-+||+|+.+.|+.. .....+..+..+ ...+|-+..++..+.+...+
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d--~~~r~em~~~~~~~~g~~tvPQIFi~~~~iGg~ddl 77 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMN--EENRQWMRENVPNENGKPLPPQIFNGDEYCGDYEAF 77 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCC--HHHHHHHHHhcCCCCCCCCCCEEEECCEEeeCHHHH
Confidence 5778777653 566889999999999999988743 222345444433 36789888888777665433
No 150
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.021 Score=33.58 Aligned_cols=63 Identities=16% Similarity=0.252 Sum_probs=44.3
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCC--------CCCCchHHH--hhCCCCccceEe-eCCeEee
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQ--------KENLQPAFL--EKNPMHSVPVLD-DNGFILW 65 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~--------~~~~~~~~~--~~~p~~~vP~L~-~~g~~l~ 65 (173)
.+||+...||-|....-.|+-.++.|+.+++.-.- --...++|- +.|.+--+|.|. +||.++.
T Consensus 4 p~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~~d~~vVl 77 (85)
T COG4545 4 PKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLTDDGKVVL 77 (85)
T ss_pred ceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEeCCCcEEE
Confidence 48999999999999999999999999998874110 001133442 344455689985 6776654
No 151
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=96.05 E-value=0.011 Score=38.93 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=30.5
Q ss_pred ceEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
++++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 478999999999999999999999999998764
No 152
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=95.71 E-value=0.037 Score=34.82 Aligned_cols=64 Identities=14% Similarity=0.142 Sum_probs=36.7
Q ss_pred CceEEeccCCChh------HHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhC------CC--Ccc-ceEeeCCeEee
Q psy13750 1 MALTLYYVHGSPP------VRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKN------PM--HSV-PVLDDNGFILW 65 (173)
Q Consensus 1 M~~~Ly~~~~s~~------~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~------p~--~~v-P~L~~~g~~l~ 65 (173)
|.+++|....|+. ++++..+|+.++|+|+.+.+.. .+..+.++.+.. |. ..+ |-|..|+.-+.
T Consensus 1 m~I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~--~e~~r~~mr~~~g~~~~~~~~~~~lpPqiF~~~~Y~G 78 (99)
T PF04908_consen 1 MVIKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAM--DEEARQWMRENAGPEEKDPGNGKPLPPQIFNGDEYCG 78 (99)
T ss_dssp -SEEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT---HHHHHHHHHHT--CCCS-TSTT--S-EEEETTEEEE
T ss_pred CEEEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcC--CHHHHHHHHHhccccccCCCCCCCCCCEEEeCCEEEe
Confidence 8899999887654 5589999999999999887753 333344455443 11 123 56777776554
Q ss_pred c
Q psy13750 66 D 66 (173)
Q Consensus 66 e 66 (173)
+
T Consensus 79 d 79 (99)
T PF04908_consen 79 D 79 (99)
T ss_dssp E
T ss_pred e
Confidence 4
No 153
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=95.57 E-value=0.12 Score=30.63 Aligned_cols=58 Identities=26% Similarity=0.325 Sum_probs=37.6
Q ss_pred CceEEeccCCChhHHHHHH----HHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeec
Q psy13750 1 MALTLYYVHGSPPVRATQL----CIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWD 66 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~e 66 (173)
|.+++ ..+.||+|.++.- ++...|+.++.+.+. ..++. ....-..+|+|+.||...+.
T Consensus 1 m~I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~------~~~~~-~~ygv~~vPalvIng~~~~~ 62 (76)
T PF13192_consen 1 MKIKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIE------DFEEI-EKYGVMSVPALVINGKVVFV 62 (76)
T ss_dssp EEEEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETT------THHHH-HHTT-SSSSEEEETTEEEEE
T ss_pred CEEEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEcc------CHHHH-HHcCCCCCCEEEECCEEEEE
Confidence 56778 5666999996555 555677777665542 13344 44456689999988876544
No 154
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=95.51 E-value=0.025 Score=36.49 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=29.4
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 57999999999999999999999999988663
No 155
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=95.50 E-value=0.025 Score=36.60 Aligned_cols=32 Identities=19% Similarity=0.131 Sum_probs=29.4
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
+++|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988764
No 156
>KOG1147|consensus
Probab=95.44 E-value=0.039 Score=44.67 Aligned_cols=79 Identities=24% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCeEeecccccccccc-c----cCC-CCchhhHHHHHHHhhcccccceecccCCCCccChhHHHHHhhhccCCCCCHHHH
Q psy13750 60 NGFILWDRTSMVGPIL-Y----FKN-DSPPVRSVKLCLLSLDLTVQLKQVTFAPGETLDTAFLKFRILFAKKKDIPEENI 133 (173)
Q Consensus 60 ~g~~l~eS~~I~~yl~-~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (173)
+|..+..+..+..|.. . ++- ++..++.+++.|.++.. . . ..
T Consensus 44 d~~~l~~a~~~~~~~~~~~~~~~~lf~~~~d~~~vd~w~~~s~-----------~--~--------------------~~ 90 (712)
T KOG1147|consen 44 DGRKLNGATEPVVYSAALAKADPKLFGNNIDRSQVDHWVSFSS-----------T--F--------------------SF 90 (712)
T ss_pred ccccccCCccchhhhhhhcccCHhHcCCcccHHHHHHHHHHhh-----------h--c--------------------ch
Confidence 3555566666666654 1 110 22378999999999877 2 0 02
Q ss_pred HHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhcc
Q psy13750 134 RRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTT 171 (173)
Q Consensus 134 ~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~ 171 (173)
..+...+..++..|.-+.||+|.++|+||+++++.|..
T Consensus 91 ~~~s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~ 128 (712)
T KOG1147|consen 91 DEISSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHS 128 (712)
T ss_pred HHHHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhc
Confidence 24566777888888888999999999999999998753
No 157
>PHA02125 thioredoxin-like protein
Probab=95.38 E-value=0.099 Score=30.91 Aligned_cols=51 Identities=16% Similarity=0.224 Sum_probs=36.3
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEee
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDD 59 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~ 59 (173)
+.+|+.+.|+.|..+.-.|+ ++.++...|+. ...++..+...-..+|++.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~----~~~~~l~~~~~v~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDT----DEGVELTAKHHIRSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeC----CCCHHHHHHcCCceeCeEEC
Confidence 78999999999998877775 45666666652 22345555555668999984
No 158
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=95.28 E-value=0.022 Score=39.54 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhccCC---ceeccCC-Cchhhhhhhhhhcc
Q psy13750 134 RRTRDVYSLVEKFLEKW---TYIACDH-ITIADFSIVTTLTT 171 (173)
Q Consensus 134 ~~~~~~l~~le~~L~~~---~~l~G~~-~T~aD~~~~~~l~~ 171 (173)
+...+++..|++.|++. .|++|+. +|-+||.+++.|.-
T Consensus 111 ~~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l 152 (168)
T PF11801_consen 111 KLAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLAL 152 (168)
T ss_pred HHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHH
Confidence 34678999999999988 9999987 99999999999864
No 159
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.27 E-value=0.027 Score=35.19 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=47.7
Q ss_pred ccCCChhHHHHHHHHHHcC-CceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeeccccccccc
Q psy13750 7 YVHGSPPVRATQLCIRALG-LEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPI 74 (173)
Q Consensus 7 ~~~~s~~~~~v~~~l~~~g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl 74 (173)
.+|-|+|+.++--+|...| ++|..+.| .....-+...++.+-..++|-|-.+|..+..|..|.+-.
T Consensus 26 ~~P~CGFS~~~vqiL~~~g~v~~~~vnV--L~d~eiR~~lk~~s~WPT~PQLyi~GEfvGG~DIv~Em~ 92 (105)
T COG0278 26 EFPQCGFSAQAVQILSACGVVDFAYVDV--LQDPEIRQGLKEYSNWPTFPQLYVNGEFVGGCDIVREMY 92 (105)
T ss_pred CCCCCCccHHHHHHHHHcCCcceeEEee--ccCHHHHhccHhhcCCCCCceeeECCEEeccHHHHHHHH
Confidence 3678999999999999999 66666554 322233334455566778999988999998887775543
No 160
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.07 E-value=0.18 Score=29.95 Aligned_cols=57 Identities=21% Similarity=0.354 Sum_probs=37.6
Q ss_pred ceEEeccCCChhHHHHHHHHHH----cCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCe
Q psy13750 2 ALTLYYVHGSPPVRATQLCIRA----LGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGF 62 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~ 62 (173)
.+++|+.+.||+|..+.-.++. .+..+....||... .++..+......+|+++.+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVME----NPQKAMEYGIMAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCcc----CHHHHHHcCCccCCEEEECCE
Confidence 3689999999999988777653 34445555666421 233334444567999987664
No 161
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.63 E-value=0.27 Score=30.23 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=37.9
Q ss_pred eEEeccCCChhHHHHHHHHHHc-----CCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEee
Q psy13750 3 LTLYYVHGSPPVRATQLCIRAL-----GLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILW 65 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 65 (173)
+.+|..+.|++|..+.-++... ++.+..+.++ . .++......-..+|.++.||..+.
T Consensus 16 i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~-----~-~~e~a~~~~V~~vPt~vidG~~~~ 77 (89)
T cd03026 16 FETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA-----L-FQDEVEERGIMSVPAIFLNGELFG 77 (89)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH-----h-CHHHHHHcCCccCCEEEECCEEEE
Confidence 6789999999999887776664 4555555443 1 234444444557999987776544
No 162
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=93.80 E-value=0.23 Score=26.92 Aligned_cols=53 Identities=21% Similarity=0.227 Sum_probs=34.5
Q ss_pred eEEeccCCChhHHHHHHHHH-----HcCCceeEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIR-----ALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
+.+|+...|+.|.+.+..+. ..++.+..+.++- . .........++...+|+++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~P~~~ 58 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDE--D-PALEKELKRYGVGGVPTLV 58 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCC--C-hHHhhHHHhCCCccccEEE
Confidence 35778888999999999998 4556665555432 1 1111222456778999996
No 163
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=93.17 E-value=0.14 Score=34.06 Aligned_cols=42 Identities=19% Similarity=0.209 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhccc
Q psy13750 130 EENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 130 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
++..+++...|..||..+......-| ++|+-||.+|+.|..|
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~L 99 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSL 99 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhh
Confidence 56678888888899988875555544 8999999999998765
No 164
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=91.30 E-value=0.31 Score=31.13 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=22.9
Q ss_pred eccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 6 YYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 6 y~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 78999999999999999999999988764
No 165
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=90.97 E-value=0.18 Score=32.22 Aligned_cols=66 Identities=17% Similarity=0.143 Sum_probs=39.3
Q ss_pred CChhHHHHHHHHHH---cCCceeEEecccCCCCCCchHHHh-hC-CCCccceEe-eCCe-------------Eeeccccc
Q psy13750 10 GSPPVRATQLCIRA---LGLEVNYEFVNLFQKENLQPAFLE-KN-PMHSVPVLD-DNGF-------------ILWDRTSM 70 (173)
Q Consensus 10 ~s~~~~~v~~~l~~---~gi~~~~~~v~~~~~~~~~~~~~~-~~-p~~~vP~L~-~~g~-------------~l~eS~~I 70 (173)
.||.|..+.=+|.. ..-..+++.|++... +..... +. .+..+|+|+ .+|. .|.|+..|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RP---R~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I 99 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRP---RQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRI 99 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCc---hHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHH
Confidence 36777766666554 334455666765432 223322 22 245789998 4333 68888999
Q ss_pred ccccc--ccC
Q psy13750 71 VGPIL--YFK 78 (173)
Q Consensus 71 ~~yl~--~~~ 78 (173)
++||+ |+-
T Consensus 100 ~~~La~r~g~ 109 (112)
T PF11287_consen 100 LRYLAERHGF 109 (112)
T ss_pred HHHHHHHcCC
Confidence 99998 553
No 166
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=89.05 E-value=0.84 Score=30.15 Aligned_cols=42 Identities=10% Similarity=0.149 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhhccCCceeccCCCchhhhhhhhhhccc
Q psy13750 130 EENIRRTRDVYSLVEKFLEKWTYIACDHITIADFSIVTTLTTL 172 (173)
Q Consensus 130 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aD~~~~~~l~~l 172 (173)
.+..++++..|..++..+..... +++++|+-|+.+|+.|..|
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~-~n~~ls~DDi~lFp~LR~L 100 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEA-VNGQLSTDDIILFPILRNL 100 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCccc-cCCcCCHHHHHHHHHHhhh
Confidence 46677888888888888854444 4668999999999999765
No 167
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=87.66 E-value=0.42 Score=31.12 Aligned_cols=50 Identities=22% Similarity=0.323 Sum_probs=22.4
Q ss_pred HHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeEeecccccccccc--ccCC
Q psy13750 14 VRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFILWDRTSMVGPIL--YFKN 79 (173)
Q Consensus 14 ~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~eS~~I~~yl~--~~~~ 79 (173)
-.|+-+++.+..-..+.. + |....-|.|. -+|+.++|++||+||+. |.+.
T Consensus 12 NLKlalA~~~~~~~lk~~-v---------------~ed~~~~~L~~~~~gF~L~e~NAIvrYl~nDF~~~ 65 (122)
T PF09635_consen 12 NLKLALALEYAQKDLKLE-V---------------NEDESGPLLKDKKSGFELFEPNAIVRYLANDFEGQ 65 (122)
T ss_dssp HHHHHHHHHH--STT--E-E----------------SS--S--EEE-S--S----HHHHHHHHTT--TTT
T ss_pred HHHHHHHHHHhCCCCeee-e---------------CCccccceeeecCCceEEecccHHHHHHHhhcCCc
Confidence 346777777765444332 1 1222448884 46899999999999998 5443
No 168
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=84.83 E-value=1.4 Score=36.20 Aligned_cols=64 Identities=11% Similarity=0.032 Sum_probs=39.5
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDR 67 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS 67 (173)
+++|..+.||+|-.+.-+++..-+....+..++-. .+..+++........||.+..+|..+.+.
T Consensus 120 i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id-~~~~~~~~~~~~v~~VP~~~i~~~~~~~g 183 (517)
T PRK15317 120 FETYVSLSCHNCPDVVQALNLMAVLNPNITHTMID-GALFQDEVEARNIMAVPTVFLNGEEFGQG 183 (517)
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEE-chhCHhHHHhcCCcccCEEEECCcEEEec
Confidence 78999999999998766665543322222222111 23355665555566899998777665553
No 169
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=83.31 E-value=1.6 Score=35.78 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=40.5
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeeccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRT 68 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~ 68 (173)
+++|..+.||+|-.+.-++....+....+..++.. .+..+++........||.+..+|..+.+..
T Consensus 121 i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id-~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~ 185 (515)
T TIGR03140 121 FETYVSLTCQNCPDVVQALNQMALLNPNISHTMID-GALFQDEVEALGIQGVPAVFLNGEEFHNGR 185 (515)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEE-chhCHHHHHhcCCcccCEEEECCcEEEecC
Confidence 68999999999998777766544432222222211 233455555545668999987776666543
No 170
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=80.54 E-value=7.8 Score=32.22 Aligned_cols=57 Identities=12% Similarity=0.081 Sum_probs=38.2
Q ss_pred eEEeccCCChhHHHHHH----HHHHc-CCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEee
Q psy13750 3 LTLYYVHGSPPVRATQL----CIRAL-GLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILW 65 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~----~l~~~-gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~ 65 (173)
+++|..+.||+|-.+.- +..+. ++..+.+.+.. .++......-..||.++.||..+.
T Consensus 480 i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~------~~~~~~~~~v~~vP~~~i~~~~~~ 541 (555)
T TIGR03143 480 IKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSH------FPDLKDEYGIMSVPAIVVDDQQVY 541 (555)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcc------cHHHHHhCCceecCEEEECCEEEE
Confidence 67888999999986654 33344 67777776542 345554444668999997776543
No 171
>KOG0911|consensus
Probab=78.42 E-value=3.4 Score=29.96 Aligned_cols=64 Identities=13% Similarity=0.005 Sum_probs=46.6
Q ss_pred cCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccc
Q psy13750 8 VHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGP 73 (173)
Q Consensus 8 ~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~y 73 (173)
.|-|+|++.+.-.|+..|++|....| ...+.-+...+..+-..+.|-|-.+|..+..+..|.+-
T Consensus 151 ~P~CGFS~~~v~iL~~~nV~~~~fdI--L~DeelRqglK~fSdWPTfPQlyI~GEFiGGlDIl~~m 214 (227)
T KOG0911|consen 151 EPKCGFSRQLVGILQSHNVNYTIFDV--LTDEELRQGLKEFSDWPTFPQLYVKGEFIGGLDILKEM 214 (227)
T ss_pred cccccccHHHHHHHHHcCCCeeEEec--cCCHHHHHHhhhhcCCCCccceeECCEeccCcHHHHHH
Confidence 57799999999999999999988766 22233334445566677889988888887776655443
No 172
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=78.06 E-value=4.9 Score=26.92 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=27.8
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
++.|..|.|++|....-.++.+|...+.+..+
T Consensus 28 ~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~ 59 (149)
T COG3019 28 MVVYKSPNCGCCDEWAQHMKANGFEVKVVETD 59 (149)
T ss_pred EEEEeCCCCccHHHHHHHHHhCCcEEEEeecC
Confidence 67999999999999888999999988877653
No 173
>PHA03075 glutaredoxin-like protein; Provisional
Probab=77.09 E-value=4.6 Score=26.10 Aligned_cols=48 Identities=21% Similarity=0.189 Sum_probs=37.9
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEee
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDD 59 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~ 59 (173)
+.|++-|.|+-|+.+.-+|....=+|+..+|+.. ++. .-.|++=+|..
T Consensus 5 LILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIl-------SfF--sK~g~v~~lg~ 52 (123)
T PHA03075 5 LILFGKPLCSVCESISEALKELEDEYDILRVNIL-------SFF--SKDGQVKVLGM 52 (123)
T ss_pred EEEeCCcccHHHHHHHHHHHHhhccccEEEEEee-------eee--ccCCceEEEec
Confidence 7899999999999999999999999999999853 122 22456777754
No 174
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=74.89 E-value=11 Score=23.28 Aligned_cols=55 Identities=7% Similarity=0.034 Sum_probs=30.8
Q ss_pred eEEeccCCChhHHHHHHHH--------HHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 3 LTLYYVHGSPPVRATQLCI--------RALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l--------~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
+..|+.+.|+.|.+..-.+ .+.+ .+....++........+++.+...-..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEE
Confidence 4567788999999765332 2232 45555555432111124555555556799884
No 175
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=74.08 E-value=20 Score=22.83 Aligned_cols=60 Identities=18% Similarity=0.183 Sum_probs=36.5
Q ss_pred eEEeccCCChhHHHHHHHHHHcCC---ceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeEeec
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGL---EVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFILWD 66 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~e 66 (173)
+..++.+.|+.|+.+.-.++..-- ..+...||.. ..++..+...-..+|+++ .+|..+..
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~----~~~~l~~~~~v~~vPt~l~fk~G~~v~~ 90 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAE----KAPFLVEKLNIKVLPTVILFKNGKTVDR 90 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcc----cCHHHHHHCCCccCCEEEEEECCEEEEE
Confidence 346778899999987766654221 1244555532 234455555567899996 57766553
No 176
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=68.75 E-value=20 Score=22.82 Aligned_cols=49 Identities=16% Similarity=0.084 Sum_probs=30.2
Q ss_pred eccCCChhHHHHHHHHHHcCCc---eeEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 6 YYVHGSPPVRATQLCIRALGLE---VNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 6 y~~~~s~~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
++.+.|++|..++-.++...-. .+...++.. ..++......-..+|++.
T Consensus 29 f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d----~~~~l~~~~~v~~vPt~~ 80 (113)
T cd02975 29 SSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD----EDKEKAEKYGVERVPTTI 80 (113)
T ss_pred eCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC----cCHHHHHHcCCCcCCEEE
Confidence 3668999999887777654322 233344422 245555555567899986
No 177
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=67.54 E-value=22 Score=20.58 Aligned_cols=54 Identities=17% Similarity=0.228 Sum_probs=33.4
Q ss_pred eEEeccCCChhHHHHHHHHHH-----cCCceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA-----LGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGF 62 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~ 62 (173)
+..++.+.|+.|....-.+.. .++.+-.+.++ ...++........+|+++ .+|.
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~------~~~~~~~~~~v~~~P~~~~~~~g~ 74 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD------ENPELAEEYGVRSIPTFLFFKNGK 74 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC------CChhHHHhcCcccccEEEEEECCE
Confidence 456778889999988777766 55555444332 133444444456789875 4554
No 178
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=64.59 E-value=29 Score=21.06 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=33.9
Q ss_pred eEEeccCCChhHHHHHHHHHH----cCCceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA----LGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFIL 64 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 64 (173)
+..|+.+.|+.|....-.++. .+-.+....+|.. ..+++.....-..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d----~~~~l~~~~~v~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID----EDQEIAEAAGIMGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC----CCHHHHHHCCCeeccEEEEEECCeEE
Confidence 456778999999988766654 1112344455432 234444444456789874 456544
No 179
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=63.69 E-value=30 Score=20.78 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=33.9
Q ss_pred eEEeccCCChhHHHHHHHHHHc----CCceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeE
Q psy13750 3 LTLYYVHGSPPVRATQLCIRAL----GLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFI 63 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 63 (173)
+..++.+.|+.|++..-.|+.. +..+....++. ...+++.+...-..+|++. .+|..
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~----~~~~~~~~~~~i~~~Pt~~~~~~g~~ 80 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA----EELPEISEKFEITAVPTFVFFRNGTI 80 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc----ccCHHHHHhcCCccccEEEEEECCEE
Confidence 4567788999999886666542 33455555553 2234444433455789885 55654
No 180
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=62.95 E-value=39 Score=21.89 Aligned_cols=32 Identities=9% Similarity=-0.055 Sum_probs=20.3
Q ss_pred eEEeccCCChhHHHHHHHHHH----cCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA----LGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~v~ 34 (173)
+..++.+.||+|+.+.-.|.. .++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 456788999999986544433 44555555444
No 181
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=61.63 E-value=8.2 Score=21.81 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=16.7
Q ss_pred CceEEecc----CCChhHHHHHHHHHH
Q psy13750 1 MALTLYYV----HGSPPVRATQLCIRA 23 (173)
Q Consensus 1 M~~~Ly~~----~~s~~~~~v~~~l~~ 23 (173)
|.++||-+ ..|.||.||--+|..
T Consensus 1 ~~mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 1 MKMKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred CcceeeEeecCCchHHHHHHHHHHHhC
Confidence 56677754 468999999887753
No 182
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=60.39 E-value=37 Score=24.65 Aligned_cols=58 Identities=17% Similarity=0.190 Sum_probs=40.0
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHH-hhCCCCccceEeeCCeE
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFL-EKNPMHSVPVLDDNGFI 63 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~L~~~g~~ 63 (173)
|++++|.+.+|..|...-=+|+.+|+-=+++.++- ..+-|. -.+---++|.+..||..
T Consensus 11 ~~VkI~~HktC~ssy~Lf~~L~nkgll~~Vkii~a-----~~p~f~~~~~~V~SvP~Vf~DGel 69 (265)
T COG5494 11 MEVKIFTHKTCVSSYMLFEYLENKGLLGKVKIIDA-----ELPPFLAFEKGVISVPSVFIDGEL 69 (265)
T ss_pred eEEEEEEecchHHHHHHHHHHHhcCCCCCceEEEc-----CCChHHHhhcceeecceEEEcCeE
Confidence 67899999999999999999999998766665541 122222 22334578988755554
No 183
>KOG2824|consensus
Probab=59.06 E-value=11 Score=28.25 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhC----CCCccceEeeCCeEeecccccccc
Q psy13750 13 PVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKN----PMHSVPVLDDNGFILWDRTSMVGP 73 (173)
Q Consensus 13 ~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~----p~~~vP~L~~~g~~l~eS~~I~~y 73 (173)
.|..||.+|+-.++.|+++.|++... ..+++..+. -...+|.+..+|.-|...-.|.+-
T Consensus 149 ~C~~VR~ilesf~V~v~ERDVSMd~~--fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 149 DCNAVRAILESFRVKVDERDVSMDSE--FREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred HHHHHHHHHHhCceEEEEecccccHH--HHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 47789999999999999999987532 234443322 234689777888777666655443
No 184
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=58.78 E-value=23 Score=20.63 Aligned_cols=33 Identities=12% Similarity=0.077 Sum_probs=28.4
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCceeEEec
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEVNYEFV 33 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v 33 (173)
|..-+..|+....+.++.-.|+..|++++.+.+
T Consensus 1 m~~~~i~F~st~~a~~~ek~lk~~gi~~~liP~ 33 (73)
T PF11823_consen 1 MKYYLITFPSTHDAMKAEKLLKKNGIPVRLIPT 33 (73)
T ss_pred CceEEEEECCHHHHHHHHHHHHHCCCcEEEeCC
Confidence 566677888889999999999999999988765
No 185
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=56.18 E-value=42 Score=24.03 Aligned_cols=53 Identities=21% Similarity=0.270 Sum_probs=32.3
Q ss_pred eEEeccCCChhHHHHHHHHHHcCC---ceeEEecccCCCCCCchHHHhhCCCCccceEee
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGL---EVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDD 59 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~ 59 (173)
+.+|+.+.||+|..+...++..-. ......+|. ...++......-..+|+++.
T Consensus 137 I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~----~~~~~~~~~~~V~~vPtl~i 192 (215)
T TIGR02187 137 IEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEA----NENPDLAEKYGVMSVPKIVI 192 (215)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeC----CCCHHHHHHhCCccCCEEEE
Confidence 567889999999988777765322 122233442 12345544444557999973
No 186
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=54.08 E-value=46 Score=19.94 Aligned_cols=58 Identities=21% Similarity=0.289 Sum_probs=36.0
Q ss_pred eEEeccCCChhHHHHHHHHHH-----cCCceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeEee
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA-----LGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFILW 65 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~ 65 (173)
+..++.+.|+.|....-.+.. .+ ++....+|.. ..+.+.+...-..+|.+. .+|....
T Consensus 21 vv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~----~~~~l~~~~~v~~~Pt~~~~~~g~~~~ 85 (103)
T PF00085_consen 21 VVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD----ENKELCKKYGVKSVPTIIFFKNGKEVK 85 (103)
T ss_dssp EEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT----TSHHHHHHTTCSSSSEEEEEETTEEEE
T ss_pred EEEEeCCCCCccccccceeccccccccc-ccccchhhhh----ccchhhhccCCCCCCEEEEEECCcEEE
Confidence 456788899999987644433 32 4455555532 235555555577899985 5665543
No 187
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=50.95 E-value=35 Score=23.52 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=25.3
Q ss_pred ceEEeccCCChhHHHH----HHHHHHc-CCceeEEecccC
Q psy13750 2 ALTLYYVHGSPPVRAT----QLCIRAL-GLEVNYEFVNLF 36 (173)
Q Consensus 2 ~~~Ly~~~~s~~~~~v----~~~l~~~-gi~~~~~~v~~~ 36 (173)
++++|....||+|... +-+++.. ++.++.+.+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 4789999999999843 4444445 888888877653
No 188
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=49.56 E-value=14 Score=23.35 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=38.8
Q ss_pred EeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCc-hHHHhh---CCCCccceEeeCCe-Eeecccccccccc
Q psy13750 5 LYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQ-PAFLEK---NPMHSVPVLDDNGF-ILWDRTSMVGPIL 75 (173)
Q Consensus 5 Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~-~~~~~~---~p~~~vP~L~~~g~-~l~eS~~I~~yl~ 75 (173)
++|...||+|.+..-.+...+..-....++........ .+.... +....+-+ ..+|. ...++.|+.+-+.
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~ 75 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLR 75 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHH
Confidence 46677899999887777777653344444432111110 111111 12223333 55565 8999999888776
No 189
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=47.10 E-value=70 Score=20.04 Aligned_cols=57 Identities=21% Similarity=0.049 Sum_probs=31.4
Q ss_pred eEEeccCCChhHHHHHHHH-----HHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeE
Q psy13750 3 LTLYYVHGSPPVRATQLCI-----RALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFI 63 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 63 (173)
+..++.+.|+.|+...-.+ ++.|.......|+.. ..+.......-..+|++. .+|..
T Consensus 28 lV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d----~~~~l~~~~~V~~~Pt~~i~~~g~~ 91 (111)
T cd02963 28 LIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG----HERRLARKLGAHSVPAIVGIINGQV 91 (111)
T ss_pred EEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc----ccHHHHHHcCCccCCEEEEEECCEE
Confidence 4567888999998654333 333323344445432 123444444556899885 55543
No 190
>PHA02278 thioredoxin-like protein
Probab=47.09 E-value=70 Score=20.02 Aligned_cols=62 Identities=13% Similarity=0.120 Sum_probs=32.8
Q ss_pred eEEeccCCChhHHHHHHHHHHc----CCceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRAL----GLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFIL 64 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 64 (173)
+.-++.+.|+.|+.+.=.++.. +.......++........++......-..+|+++ .+|..+
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~~v 85 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQLV 85 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCEEE
Confidence 3456778899999766544432 1222234444321111124444444456789986 567654
No 191
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=46.76 E-value=58 Score=19.47 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=32.9
Q ss_pred eEEeccCCChhHHHHHHHHHHcC----CceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeE
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALG----LEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFI 63 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~g----i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 63 (173)
+..++.+.|+.|....-.+.... -.+....++.. ..+++.+...-..+|+++ ++|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~----~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD----AQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc----CCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 34567788999997655554322 13444555532 234554444556799986 56644
No 192
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=43.38 E-value=73 Score=19.17 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=27.5
Q ss_pred eEEeccCCChhHHHHHHHH-----HHcC-CceeEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 3 LTLYYVHGSPPVRATQLCI-----RALG-LEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l-----~~~g-i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
+.+++.+.|+.|+...-.+ ...+ -.+....++.. ....+.+.+...-..+|.++
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT--KPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECC--CCccHHHHHhCCCccccEEE
Confidence 4567778899998663222 2221 22333334432 11234444444445789885
No 193
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=42.86 E-value=57 Score=20.06 Aligned_cols=57 Identities=12% Similarity=0.072 Sum_probs=30.3
Q ss_pred eEEeccCCChhHHHHHHHHHH-----cCCceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA-----LGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFIL 64 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 64 (173)
+..++.+.|+.|....-.+.. .+-......++.. .++..+...-..+|++. .+|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-----~~~~~~~~~v~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-----TIDTLKRYRGKCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-----CHHHHHHcCCCcCcEEEEEECCEEE
Confidence 346778889999866544433 2112333344322 23334444456789774 566543
No 194
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=42.42 E-value=30 Score=19.50 Aligned_cols=29 Identities=10% Similarity=0.043 Sum_probs=19.8
Q ss_pred EEeccCCChhHHHHHHHHHHcCCceeEEe
Q psy13750 4 TLYYVHGSPPVRATQLCIRALGLEVNYEF 32 (173)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~ 32 (173)
++|.+....-+..++-.|+..||++....
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~ 30 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKN 30 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEEC
Confidence 67777777788899999999999997754
No 195
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=41.64 E-value=70 Score=22.04 Aligned_cols=35 Identities=14% Similarity=0.079 Sum_probs=22.9
Q ss_pred CceEEeccCCChhHHHHH----HHHHHc--CCceeEEeccc
Q psy13750 1 MALTLYYVHGSPPVRATQ----LCIRAL--GLEVNYEFVNL 35 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~----~~l~~~--gi~~~~~~v~~ 35 (173)
|.+.+|..+.||+|.... -+.+.. +++++.+...+
T Consensus 1 ~~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L 41 (193)
T cd03025 1 LELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGL 41 (193)
T ss_pred CeEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccc
Confidence 568899999999998433 333333 66666655443
No 196
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=39.17 E-value=74 Score=19.95 Aligned_cols=58 Identities=16% Similarity=0.256 Sum_probs=31.8
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCce---eEEecccCCCCCCchHHHhhCCCCccceEe--eCCeEee
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEV---NYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFILW 65 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~ 65 (173)
+..++.+.|+.|..+.-.++...-.| ....|+... . +..+...-..+|+++ .+|..+.
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~----~-~l~~~~~i~~~Pt~~~f~~G~~v~ 90 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEK----A-FLVNYLDIKVLPTLLVYKNGELID 90 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchh----h-HHHHhcCCCcCCEEEEEECCEEEE
Confidence 34677889999997765554422222 233444211 1 333333445789885 5666543
No 197
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=38.84 E-value=49 Score=23.24 Aligned_cols=21 Identities=10% Similarity=0.176 Sum_probs=17.1
Q ss_pred eEEeccCCChhHHHHHHHHHH
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA 23 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~ 23 (173)
+.+|..+.||+|++..-.+..
T Consensus 81 i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 81 VYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEECCCCccHHHHHHHHhh
Confidence 567788999999998877764
No 198
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.41 E-value=43 Score=19.94 Aligned_cols=22 Identities=9% Similarity=-0.151 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHcCCceeEEe
Q psy13750 11 SPPVRATQLCIRALGLEVNYEF 32 (173)
Q Consensus 11 s~~~~~v~~~l~~~gi~~~~~~ 32 (173)
-+|++|+.-.|+..|++|+...
T Consensus 15 vGF~rk~L~I~E~~~is~Eh~P 36 (76)
T cd04911 15 VGFGRKLLSILEDNGISYEHMP 36 (76)
T ss_pred hcHHHHHHHHHHHcCCCEeeec
Confidence 4899999999999999998764
No 199
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=36.91 E-value=1.6e+02 Score=21.08 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=33.0
Q ss_pred eEEecc---CCChhHHHHHHHHHHcC-----CceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeE
Q psy13750 3 LTLYYV---HGSPPVRATQLCIRALG-----LEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFI 63 (173)
Q Consensus 3 ~~Ly~~---~~s~~~~~v~~~l~~~g-----i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 63 (173)
+.+|.. +.||.|..+.-.++... +.+..+.++. ...++......-..+|++. .+|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~----~~~~~l~~~~~V~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDT----PEDKEEAEKYGVERVPTTIILEEGKD 89 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCC----cccHHHHHHcCCCccCEEEEEeCCee
Confidence 456666 78999997776665543 3333333331 1234454444556789985 45543
No 200
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=35.70 E-value=63 Score=23.93 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=15.6
Q ss_pred eEEeccCCChhHHHHHHHHH
Q psy13750 3 LTLYYVHGSPPVRATQLCIR 22 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~ 22 (173)
+..|..+.||||++..-.+.
T Consensus 121 I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 121 VYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEECCCChhHHHHHHHHH
Confidence 55677889999999876654
No 201
>PRK09266 hypothetical protein; Provisional
Probab=34.23 E-value=37 Score=25.24 Aligned_cols=56 Identities=16% Similarity=0.076 Sum_probs=35.1
Q ss_pred HHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCCeEeecccccccccc
Q psy13750 20 CIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 20 ~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
.++..|+++++..++...-....+-|...+..|-+||-..|+..+.++..|.+.|.
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfltnSl~gi~pV~~i~~~~~~~~~~~~~~l~ 255 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAIDDVALPDSHALLELLR 255 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhhhcCccceEEEEEECCEECCCCchHHHHHH
Confidence 44566899998888753322333445555556889999877776654445544443
No 202
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=34.16 E-value=82 Score=25.82 Aligned_cols=44 Identities=18% Similarity=0.160 Sum_probs=33.8
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEeeCC
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLDDNG 61 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~~~g 61 (173)
+.++....|..++.+..+|+...++|+.+.+. ..|.+|+|.+++
T Consensus 63 LVFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~---------------~kg~lP~LT~~~ 106 (487)
T PF12062_consen 63 LVFVESQYSQLGQDIVAILESNRFKYKVEIAS---------------GKGDLPVLTDND 106 (487)
T ss_pred EEEEeeccchhhHHHHHHHHhceeeEEEEEcc---------------CCCCCCccccCC
Confidence 34556667899999999999999999887652 245789998653
No 203
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=34.09 E-value=1.3e+02 Score=19.23 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=13.8
Q ss_pred eEEeccCCChhHHHHHHHHHH
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA 23 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~ 23 (173)
+..++.+.|+.|++..-.+..
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~ 43 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAE 43 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhh
Confidence 345667889999977444443
No 204
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=33.99 E-value=1.3e+02 Score=21.92 Aligned_cols=21 Identities=5% Similarity=-0.009 Sum_probs=16.5
Q ss_pred eEEeccCCChhHHHHHHHHHH
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA 23 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~ 23 (173)
+..|..+.||||++..--+..
T Consensus 111 I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 111 ITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEECCCChHHHHHHHHHHH
Confidence 567888999999988666554
No 205
>PTZ00051 thioredoxin; Provisional
Probab=33.59 E-value=1.1e+02 Score=18.27 Aligned_cols=57 Identities=16% Similarity=0.248 Sum_probs=31.8
Q ss_pred eEEeccCCChhHHHHHHHHHHcC---CceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeE
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALG---LEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFI 63 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~g---i~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~ 63 (173)
+..++.+.|+.|+...-.++... ..+....++.. ....+.+...-..+|+++ .+|..
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~~~~~g~~ 83 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVD----ELSEVAEKENITSMPTFKVFKNGSV 83 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECc----chHHHHHHCCCceeeEEEEEeCCeE
Confidence 45677889999997765554421 12333444421 233444444556789885 45544
No 206
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=33.57 E-value=81 Score=18.34 Aligned_cols=22 Identities=9% Similarity=0.069 Sum_probs=16.7
Q ss_pred eEEeccCCChhHHHHHHHHHHc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRAL 24 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~ 24 (173)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678889999999776666553
No 207
>COG3150 Predicted esterase [General function prediction only]
Probab=31.99 E-value=99 Score=21.79 Aligned_cols=33 Identities=18% Similarity=0.085 Sum_probs=27.7
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEeccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNL 35 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~ 35 (173)
+-|++|+.||.+.+..+.+...+-....+.+..
T Consensus 3 lYlHGFnSSP~shka~l~~q~~~~~~~~i~y~~ 35 (191)
T COG3150 3 LYLHGFNSSPGSHKAVLLLQFIDEDVRDIEYST 35 (191)
T ss_pred EEEecCCCCcccHHHHHHHHHHhccccceeeec
Confidence 457899999999999999999988877766653
No 208
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=31.35 E-value=70 Score=22.39 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=26.1
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCce
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLEV 28 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~~ 28 (173)
|-+++-+-|.|+-+--.+++.+..|+++
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~ 28 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKL 28 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCce
Confidence 6789999999999999999999999988
No 209
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=30.24 E-value=28 Score=22.20 Aligned_cols=22 Identities=14% Similarity=0.087 Sum_probs=18.4
Q ss_pred cceEe-eCCeEeecccccccccc
Q psy13750 54 VPVLD-DNGFILWDRTSMVGPIL 75 (173)
Q Consensus 54 vP~L~-~~g~~l~eS~~I~~yl~ 75 (173)
+|.+. .+|.++++|..|+++.+
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fg 24 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFG 24 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHC
Confidence 46554 78999999999999987
No 210
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=30.20 E-value=1.2e+02 Score=17.83 Aligned_cols=52 Identities=23% Similarity=0.429 Sum_probs=32.5
Q ss_pred eEEeccCCChhHHHH-----HHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 3 LTLYYVHGSPPVRAT-----QLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v-----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
++||-...+|.+.+. +++=++.+-+|+...+|... .|+......---.|+|+
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~----~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLK----QPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEccc----CHhHHhhCCEEEechhh
Confidence 578887777777654 44555668899998888643 34444333333457765
No 211
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=29.05 E-value=85 Score=18.95 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=28.7
Q ss_pred eEEeccCCChhHHHHHHHHHH-----cCCceeEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA-----LGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
+..++.+.|+.|....-.+.. .+..+....+|.. ..+.+.+...-..+|.+.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT----QEPGLSGRFFVTALPTIY 76 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc----CCHhHHHHcCCcccCEEE
Confidence 346778889999865544432 2333444444432 233444444456789885
No 212
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=28.13 E-value=70 Score=19.73 Aligned_cols=20 Identities=5% Similarity=0.012 Sum_probs=13.3
Q ss_pred eEEeccCCChhHHHHHHHHH
Q psy13750 3 LTLYYVHGSPPVRATQLCIR 22 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~ 22 (173)
+.+++.+.||+|.+..-.+.
T Consensus 9 v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 9 VVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHH
Confidence 45677899999998755554
No 213
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=28.06 E-value=1.1e+02 Score=20.80 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=19.4
Q ss_pred CChhHHHHHHHHHHcCCceeEEecc
Q psy13750 10 GSPPVRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 10 ~s~~~~~v~~~l~~~gi~~~~~~v~ 34 (173)
.-+.+++++-.|+..|++|+.....
T Consensus 12 D~~~~~~a~~~L~~~gi~~~~~V~s 36 (150)
T PF00731_consen 12 DLPIAEEAAKTLEEFGIPYEVRVAS 36 (150)
T ss_dssp GHHHHHHHHHHHHHTT-EEEEEE--
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEe
Confidence 3488999999999999999987665
No 214
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=26.82 E-value=1.6e+02 Score=18.18 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=28.8
Q ss_pred eEEeccCCChhHHHHHHHHHH-----cCCceeEEecccCCCCCCchHHH-hhCCCCccceEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA-----LGLEVNYEFVNLFQKENLQPAFL-EKNPMHSVPVLD 58 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~-~~~p~~~vP~L~ 58 (173)
+..++.+.|+.|+...-.+.. ++..+....|+... . ...+. +...-..+|++.
T Consensus 25 lv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~--~-~~~~~~~~~~v~~~Pti~ 83 (109)
T cd02993 25 LVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG--E-QREFAKEELQLKSFPTIL 83 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc--c-chhhHHhhcCCCcCCEEE
Confidence 457788999999966443332 33334444554322 1 11222 234456789885
No 215
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=26.54 E-value=1.4e+02 Score=21.53 Aligned_cols=45 Identities=4% Similarity=-0.056 Sum_probs=23.1
Q ss_pred HHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 14 VRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 14 ~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
-.+||......|||.+.+.-.-.+-.|..-.|+...-.|++|+++
T Consensus 148 D~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg~~g~lP~~l 192 (200)
T TIGR03759 148 DERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLGLQGQLPAVV 192 (200)
T ss_pred HHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHccCCCCCCEEE
Confidence 345666666666665444321111123333455544467788885
No 216
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=26.40 E-value=62 Score=19.46 Aligned_cols=21 Identities=14% Similarity=0.104 Sum_probs=14.6
Q ss_pred eEEeccCCChhHHHHHHHHHH
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA 23 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~ 23 (173)
+.+++.+.|+.|+...-.++.
T Consensus 22 ~v~f~~~~C~~C~~~~~~~~~ 42 (104)
T cd02995 22 LVEFYAPWCGHCKALAPIYEE 42 (104)
T ss_pred EEEEECCCCHHHHHHhhHHHH
Confidence 456788899999876544433
No 217
>PF13728 TraF: F plasmid transfer operon protein
Probab=25.48 E-value=2.6e+02 Score=20.15 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=24.3
Q ss_pred eEEeccCCChhHH----HHHHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVR----ATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~----~v~~~l~~~gi~~~~~~v~ 34 (173)
+-+++...|++|+ .++.+....|+++..+.+|
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~D 159 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLD 159 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecC
Confidence 4567778899997 4577777789888777765
No 218
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=25.15 E-value=1.3e+02 Score=21.33 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=23.5
Q ss_pred eEEeccCCChhHHH----HHHHHHHcCCceeEEeccc
Q psy13750 3 LTLYYVHGSPPVRA----TQLCIRALGLEVNYEFVNL 35 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~----v~~~l~~~gi~~~~~~v~~ 35 (173)
+.+|....||+|.- ++-++...+++++.+.+.+
T Consensus 3 Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 3 IELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred eEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 78899999999983 3444556677777766644
No 219
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=25.05 E-value=1.9e+02 Score=18.30 Aligned_cols=16 Identities=25% Similarity=0.376 Sum_probs=12.6
Q ss_pred eEEeccCCChhHHHHH
Q psy13750 3 LTLYYVHGSPPVRATQ 18 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~ 18 (173)
+..++.+.|++|.+..
T Consensus 18 lv~f~a~wC~~C~~~~ 33 (125)
T cd02951 18 LLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEeCCCCHHHHHHH
Confidence 4567788999999764
No 220
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=24.89 E-value=2.2e+02 Score=19.71 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=30.7
Q ss_pred EEeccCCChhHHHHHHHHHHcCC---ceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeEee
Q psy13750 4 TLYYVHGSPPVRATQLCIRALGL---EVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFILW 65 (173)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~ 65 (173)
..++.+.|+.|..+--.|+..-- ..+...|+... . ......+-..+|+++ -+|..+.
T Consensus 88 V~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~----~-~l~~~f~v~~vPTlllyk~G~~v~ 149 (175)
T cd02987 88 VHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASA----T-GASDEFDTDALPALLVYKGGELIG 149 (175)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccc----h-hhHHhCCCCCCCEEEEEECCEEEE
Confidence 35677889999866443322211 23344444221 1 334445566899885 4665544
No 221
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=24.53 E-value=1.2e+02 Score=18.61 Aligned_cols=53 Identities=15% Similarity=0.206 Sum_probs=27.9
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCce---eEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEV---NYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
+..++.+.|+.|+...-.++...-.| ....++.. ...+...+...-..+|++.
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~---~~~~~l~~~~~V~~~PT~~ 77 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEES---SIKPSLLSRYGVVGFPTIL 77 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECC---CCCHHHHHhcCCeecCEEE
Confidence 45677888999987765554322222 22333321 1234444444455789874
No 222
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=23.97 E-value=2.4e+02 Score=19.13 Aligned_cols=59 Identities=14% Similarity=0.174 Sum_probs=31.4
Q ss_pred eEEeccCCChhHHHHHHHHHH-----cCCceeEEecccCCCCCCchHHHhhCCC------CccceEe--eCCeEee
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA-----LGLEVNYEFVNLFQKENLQPAFLEKNPM------HSVPVLD--DNGFILW 65 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~~~~p~------~~vP~L~--~~g~~l~ 65 (173)
+..|+.+.|+.|....-.++. .+-.++...||... .++..+...- .++|+++ .+|..+.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~----~~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR----FPNVAEKFRVSTSPLSKQLPTIILFQGGKEVA 122 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC----CHHHHHHcCceecCCcCCCCEEEEEECCEEEE
Confidence 456777889999866544432 22234555565422 2333322212 2489885 5665543
No 223
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=23.58 E-value=1e+02 Score=21.15 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=21.7
Q ss_pred ChhHHHHHHHHHHcCCceeEEeccc
Q psy13750 11 SPPVRATQLCIRALGLEVNYEFVNL 35 (173)
Q Consensus 11 s~~~~~v~~~l~~~gi~~~~~~v~~ 35 (173)
-+.++++...|+..|++|+......
T Consensus 11 ~~~~~~a~~~L~~~gi~~dv~V~Sa 35 (156)
T TIGR01162 11 LPTMKKAADILEEFGIPYELRVVSA 35 (156)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEECc
Confidence 3788999999999999999987764
No 224
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=23.51 E-value=1.3e+02 Score=20.85 Aligned_cols=33 Identities=12% Similarity=0.203 Sum_probs=21.0
Q ss_pred eEEeccCCChhHHHHH----HHHHHc----CCceeEEeccc
Q psy13750 3 LTLYYVHGSPPVRATQ----LCIRAL----GLEVNYEFVNL 35 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~----~~l~~~----gi~~~~~~v~~ 35 (173)
+++|....||+|.-.. -+.+.. ++.++.+.+.+
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L 41 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFEL 41 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeee
Confidence 4688899999998433 333444 46666555543
No 225
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=23.48 E-value=97 Score=18.54 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=12.2
Q ss_pred EEeccCCChhHHHHHHHHHH
Q psy13750 4 TLYYVHGSPPVRATQLCIRA 23 (173)
Q Consensus 4 ~Ly~~~~s~~~~~v~~~l~~ 23 (173)
..++.+.|+.|.+..-.+..
T Consensus 24 l~f~~~~C~~C~~~~~~l~~ 43 (116)
T cd02966 24 VNFWASWCPPCRAEMPELEA 43 (116)
T ss_pred EEeecccChhHHHHhHHHHH
Confidence 45566788999865434333
No 226
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=23.04 E-value=56 Score=16.52 Aligned_cols=24 Identities=8% Similarity=-0.002 Sum_probs=17.3
Q ss_pred CCccceEeeCCeEeeccccccccc
Q psy13750 51 MHSVPVLDDNGFILWDRTSMVGPI 74 (173)
Q Consensus 51 ~~~vP~L~~~g~~l~eS~~I~~yl 74 (173)
.|.+|....++..+.....|.+|+
T Consensus 24 ~g~i~~~~~g~~~~~~~~~l~~~~ 47 (49)
T TIGR01764 24 EGELPAYRVGRHYRIPREDVDEYL 47 (49)
T ss_pred cCCCCeEEeCCeEEEeHHHHHHHH
Confidence 467888766777777777776665
No 227
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=22.93 E-value=2.2e+02 Score=18.29 Aligned_cols=59 Identities=15% Similarity=0.040 Sum_probs=35.1
Q ss_pred EEeccC--CChhHHHHHHHHHHcCCcee----EEecccCCCCCCchHHHhhCCCCccceEe--eCCeEeec
Q psy13750 4 TLYYVH--GSPPVRATQLCIRALGLEVN----YEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFILWD 66 (173)
Q Consensus 4 ~Ly~~~--~s~~~~~v~~~l~~~gi~~~----~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l~e 66 (173)
.+++.. .||-|+.+.-.|+..--.|. ...++. ...++......-..+|+|+ .+|..+..
T Consensus 32 ~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdi----d~~~~la~~f~V~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 32 LLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGR----ADEQALAARFGVLRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEEC----CCCHHHHHHcCCCcCCEEEEEECCEEEEE
Confidence 345555 48999988777766544443 223432 1234555555566799996 57776654
No 228
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=22.73 E-value=1.9e+02 Score=17.47 Aligned_cols=52 Identities=15% Similarity=0.177 Sum_probs=28.7
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCc----eeEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLE----VNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
+..|+.+.|+.|.+..-.++...-. +....+|.. ..+++.....-..+|.+.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~----~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ----KYESLCQQANIRAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC----chHHHHHHcCCCcccEEE
Confidence 4567788999998764444332222 333444432 234444444456789885
No 229
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=22.59 E-value=1.9e+02 Score=17.42 Aligned_cols=52 Identities=15% Similarity=0.119 Sum_probs=29.2
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCc----eeEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLE----VNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
+..++.+.|+.|....-.++...-. +....||.. ..+...+...-..+|++.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~----~~~~~~~~~~v~~~Pt~~ 77 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG----DDRMLCRSQGVNSYPSLY 77 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC----ccHHHHHHcCCCccCEEE
Confidence 3467788999998665554332222 344455532 123444444456789884
No 230
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=22.15 E-value=2e+02 Score=18.11 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=13.5
Q ss_pred eEEeccCCChhHHHHHHHHH
Q psy13750 3 LTLYYVHGSPPVRATQLCIR 22 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~ 22 (173)
+..|+.+.|+.|....-.++
T Consensus 23 vV~f~a~wC~~C~~~~~~~~ 42 (114)
T cd02992 23 LVEFYASWCGHCRAFAPTWK 42 (114)
T ss_pred EEEEECCCCHHHHHHhHHHH
Confidence 34677888999986544443
No 231
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=21.89 E-value=1.5e+02 Score=20.23 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=20.7
Q ss_pred eEEeccCCChhHHHH----HHHHHHcCCceeEEecc
Q psy13750 3 LTLYYVHGSPPVRAT----QLCIRALGLEVNYEFVN 34 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v----~~~l~~~gi~~~~~~v~ 34 (173)
+++|....||+|.-. +-+....++.++.+.+.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 467888999999854 33333456666666553
No 232
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=21.80 E-value=2.6e+02 Score=18.79 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=42.8
Q ss_pred eEEeccCCChhHHHHHHHHHHcCCceeEEecccCCCCCCchHHHhhCCCC----ccceEeeCCeEeecccccccccc
Q psy13750 3 LTLYYVHGSPPVRATQLCIRALGLEVNYEFVNLFQKENLQPAFLEKNPMH----SVPVLDDNGFILWDRTSMVGPIL 75 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~p~~----~vP~L~~~g~~l~eS~~I~~yl~ 75 (173)
+++++.-.|++|-...-+|..+...-..+..++.. +. ....+...+.. ..=+++.+|..+.+|.|+++-+.
T Consensus 10 ~vvlyDG~C~lC~~~vrfLi~~D~~~~i~f~~~q~-e~-g~~~l~~~~l~~~~~~s~~~~~~g~~~~~sdA~~~i~~ 84 (137)
T COG3011 10 LVVLYDGVCPLCDGWVRFLIRRDQGGRIRFAALQS-EP-GQALLEAAGLDPEDVDSVLLVEAGQLLVGSDAAIRILR 84 (137)
T ss_pred EEEEECCcchhHHHHHHHHHHhccCCcEEEEeccC-ch-hhhHHhhcCCChhhhheeeEecCCceEeccHHHHHHHH
Confidence 56777888999987777777766555555444321 11 11222222221 11133578999999999988776
No 233
>TIGR00096 probable S-adenosylmethionine-dependent methyltransferase, YraL family. No member of this family is characterized, but Pfam model pfam00590 (tetrapyrrole methylase) demonstrates homology between this family and its other members, which include several methylases for the tetrapyrrole class of compound, as well as the enzyme diphthine synthase.
Probab=21.78 E-value=2.4e+02 Score=21.37 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCceeEEecc
Q psy13750 14 VRATQLCIRALGLEVNYEFVN 34 (173)
Q Consensus 14 ~~~v~~~l~~~gi~~~~~~v~ 34 (173)
++..+.+|...||.-..+.+.
T Consensus 34 TR~t~kLL~~~~I~~~~~~~~ 54 (276)
T TIGR00096 34 TRTSKLLLHLGIIATPKAFHI 54 (276)
T ss_pred chhHHHHHHhcCCCCceEEEe
Confidence 456677888888865454443
No 234
>PRK09381 trxA thioredoxin; Provisional
Probab=21.65 E-value=2.1e+02 Score=17.51 Aligned_cols=58 Identities=17% Similarity=0.235 Sum_probs=31.6
Q ss_pred eEEeccCCChhHHHHHHHHHH----cCCceeEEecccCCCCCCchHHHhhCCCCccceEe--eCCeEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRA----LGLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD--DNGFIL 64 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~--~~g~~l 64 (173)
+..++.+.||.|+...-.++. .+-.+....++... .+...+...-..+|+++ .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~----~~~~~~~~~v~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ----NPGTAPKYGIRGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC----ChhHHHhCCCCcCCEEEEEeCCeEE
Confidence 345677889999976544432 22224445555322 23333334456799885 466543
No 235
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=21.48 E-value=2.4e+02 Score=18.31 Aligned_cols=64 Identities=5% Similarity=-0.099 Sum_probs=34.9
Q ss_pred EEeccCCChhHHHHHH-------HHHHcCCceeEEecccCCCCCCchHHHh----hCCCCccceEe---eCCeEeecc
Q psy13750 4 TLYYVHGSPPVRATQL-------CIRALGLEVNYEFVNLFQKENLQPAFLE----KNPMHSVPVLD---DNGFILWDR 67 (173)
Q Consensus 4 ~Ly~~~~s~~~~~v~~-------~l~~~gi~~~~~~v~~~~~~~~~~~~~~----~~p~~~vP~L~---~~g~~l~eS 67 (173)
..++...|+.|++..- +....+-.|..+.+|..........+.+ .+..+-+|+++ .+|..+..+
T Consensus 20 l~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~~~~~~ 97 (124)
T cd02955 20 LSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLKPFFGG 97 (124)
T ss_pred EEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCCEEeee
Confidence 3467788999986632 2223344677777775321111111211 23345689885 357777665
No 236
>PRK03600 nrdI ribonucleotide reductase stimulatory protein; Reviewed
Probab=20.92 E-value=85 Score=20.85 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=17.7
Q ss_pred CceEEeccCCChhHHHHHHHHHHcCCc
Q psy13750 1 MALTLYYVHGSPPVRATQLCIRALGLE 27 (173)
Q Consensus 1 M~~~Ly~~~~s~~~~~v~~~l~~~gi~ 27 (173)
|++++||++.++.+++. .+..+.+
T Consensus 1 ~~~~I~Y~S~TGNt~~f---~~kl~~~ 24 (134)
T PRK03600 1 MMMLVYFSSKTGNTHRF---VQKLGLP 24 (134)
T ss_pred CcEEEEEECCChhHHHH---HHHhCCc
Confidence 78999999999999854 3334444
No 237
>KOG2501|consensus
Probab=20.72 E-value=2.5e+02 Score=19.39 Aligned_cols=39 Identities=18% Similarity=0.197 Sum_probs=22.3
Q ss_pred CCChhHH-------HHHHHHHHcCCceeEEecccCCCCCCchHHHh
Q psy13750 9 HGSPPVR-------ATQLCIRALGLEVNYEFVNLFQKENLQPAFLE 47 (173)
Q Consensus 9 ~~s~~~~-------~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~ 47 (173)
..||.|+ +.--.+...+-|++++.|+.......-.+|..
T Consensus 43 ~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~ 88 (157)
T KOG2501|consen 43 HWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYML 88 (157)
T ss_pred EECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHH
Confidence 3567676 22334555667899999986544333334443
No 238
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=20.57 E-value=1.9e+02 Score=19.94 Aligned_cols=30 Identities=10% Similarity=0.221 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHcCCceeEEecccCCCCCCchHH
Q psy13750 12 PPVRATQLCIRALGLEVNYEFVNLFQKENLQPAF 45 (173)
Q Consensus 12 ~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~ 45 (173)
+....+.-.|+..|++|+.+.++ .|+.|+.
T Consensus 16 ~~mk~Aa~~L~~fgi~ye~~VvS----AHRTPe~ 45 (162)
T COG0041 16 DTMKKAAEILEEFGVPYEVRVVS----AHRTPEK 45 (162)
T ss_pred HHHHHHHHHHHHcCCCeEEEEEe----ccCCHHH
Confidence 45567788899999999999886 4555653
No 239
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=20.50 E-value=2.1e+02 Score=17.28 Aligned_cols=54 Identities=13% Similarity=0.074 Sum_probs=28.6
Q ss_pred eEEeccCCChhHHHHHHHHHHc----CCceeEEecccCCCCCCchHHHhhCCCCccceEe
Q psy13750 3 LTLYYVHGSPPVRATQLCIRAL----GLEVNYEFVNLFQKENLQPAFLEKNPMHSVPVLD 58 (173)
Q Consensus 3 ~~Ly~~~~s~~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~L~ 58 (173)
+..++.+.|+.|+...-.+... +-.+....++... ...+++.....-..+|.+.
T Consensus 22 lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~--~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 22 LVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE--DKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc--cccHHHHHHcCCCcCCEEE
Confidence 4567788899998654333322 2223344444322 1133444444456789885
Done!