RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13751
(149 letters)
>gnl|CDD|239343 cd03045, GST_N_Delta_Epsilon, GST_N family, Class Delta and
Epsilon subfamily; GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The class Delta and
Epsilon subfamily is made up primarily of insect GSTs,
which play major roles in insecticide resistance by
facilitating reductive dehydrochlorination of
insecticides or conjugating them with GSH to produce
water-soluble metabolites that are easily excreted.
They are also implicated in protection against cellular
damage by oxidative stress.
Length = 74
Score = 52.6 bits (127), Expect = 3e-10
Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 26 EMEISVLVTFAPGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYLVS 76
E+ + V GE L FLK NP+ ++P LVD ++ +SHAI YLV
Sbjct: 25 ELNL-KEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGFVLWESHAILIYLVE 74
>gnl|CDD|223698 COG0625, Gst, Glutathione S-transferase [Posttranslational
modification, protein turnover, chaperones].
Length = 211
Score = 54.0 bits (130), Expect = 1e-09
Identities = 32/89 (35%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 31 VLVTFAPGETLDTAFLKQNPRRSLPALVDGDLL-ICDSHAINAYLVSAYGKNDVLYPKDS 89
VLV E FL NP +PALVD D + +S AI YL Y L P D
Sbjct: 29 VLVDLDA-EQKPPDFLALNPLGKVPALVDDDGEVLTESGAILEYLAERYP-GPPLLPADP 86
Query: 90 ---KDRALVDQRLYFDAGEIFPTIKQIAV 115
+ RAL+ L+F A ++ P I Q
Sbjct: 87 LARRARALLLWWLFFAASDLHPVIGQRRR 115
>gnl|CDD|239344 cd03046, GST_N_GTT1_like, GST_N family, Saccharomyces cerevisiae
GTT1-like subfamily; composed of predominantly
uncharacterized proteins with similarity to the S.
cerevisiae GST protein, GTT1, and the
Schizosaccharomyces pombe GST-III. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GTT1, a
homodimer, exhibits GST activity with standard
substrates and associates with the endoplasmic
reticulum. Its expression is induced after diauxic
shift and remains high throughout the stationary phase.
S. pombe GST-III is implicated in the detoxification of
various metals.
Length = 76
Score = 43.6 bits (104), Expect = 1e-06
Identities = 22/49 (44%), Positives = 27/49 (55%)
Query: 31 VLVTFAPGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYLVSAYG 79
VL PGE +L NP +P LVDGDL++ +S AI YL YG
Sbjct: 28 VLYDRGPGEQAPPEYLAINPLGKVPVLVDGDLVLTESAAIILYLAEKYG 76
>gnl|CDD|238319 cd00570, GST_N_family, Glutathione S-transferase (GST) family,
N-terminal domain; a large, diverse group of cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
In addition, GSTs also show GSH peroxidase activity and
are involved in the synthesis of prostaglandins and
leukotrienes. This family, also referred to as soluble
GSTs, is the largest family of GSH transferases and is
only distantly related to the mitochondrial GSTs (GSTK
subfamily, a member of the DsbA family). Soluble GSTs
bear no structural similarity to microsomal GSTs (MAPEG
family) and display additional activities unique to
their group, such as catalyzing thiolysis, reduction
and isomerization of certain compounds. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. Based on sequence
similarity, different classes of GSTs have been
identified, which display varying tissue distribution,
substrate specificities and additional specific
activities. In humans, GSTs display polymorphisms which
may influence individual susceptibility to diseases
such as cancer, arthritis, allergy and sclerosis. Some
GST family members with non-GST functions include
glutaredoxin 2, the CLIC subfamily of anion channels,
prion protein Ure2p, crystallins, metaxin 2 and
stringent starvation protein A.
Length = 71
Score = 43.3 bits (103), Expect = 1e-06
Identities = 18/43 (41%), Positives = 22/43 (51%)
Query: 32 LVTFAPGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYL 74
LV GE FL NP +P L DG L++ +S AI YL
Sbjct: 28 LVPVDLGEGEQEEFLALNPLGKVPVLEDGGLVLTESLAILEYL 70
>gnl|CDD|239354 cd03056, GST_N_4, GST_N family, unknown subfamily 4; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains.
Length = 73
Score = 42.9 bits (102), Expect = 2e-06
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 31 VLVTFAPGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYL 74
V V GET FL NP +P L ++ +S+AI YL
Sbjct: 29 VEVDILKGETRTPEFLALNPNGEVPVLELDGRVLAESNAILVYL 72
>gnl|CDD|233333 TIGR01262, maiA, maleylacetoacetate isomerase. Maleylacetoacetate
isomerase is an enzyme of tyrosine and phenylalanine
catabolism. It requires glutathione and belongs by
homology to the zeta family of glutathione
S-transferases. The enzyme (EC 5.2.1.2) is described as
active also on maleylpyruvate, and the example from a
Ralstonia sp. catabolic plasmid is described as a
maleylpyruvate isomerase involved in gentisate
catabolism [Energy metabolism, Amino acids and amines].
Length = 210
Score = 43.9 bits (104), Expect = 6e-06
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 38 GETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYLVSAYGKNDVLYPKDSKDRALVDQ 97
GE FL NP+ +P L ++ S AI YL Y +L P D RA V
Sbjct: 36 GEQRSPEFLALNPQGLVPTLDIDGEVLTQSLAIIEYLEETYPDPPLL-PADPIKRARVRA 94
Query: 98 RLYFDAGEIFP 108
A +I P
Sbjct: 95 LALLIACDIHP 105
>gnl|CDD|239345 cd03047, GST_N_2, GST_N family, unknown subfamily 2; composed of
uncharacterized bacterial proteins with similarity to
GSTs. GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes. The GST fold
contains an N-terminal TRX-fold domain and a C-terminal
alpha helical domain, with an active site located in a
cleft between the two domains. The sequence from
Burkholderia cepacia was identified as part of a gene
cluster involved in the degradation of
2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g.
Class Zeta and Delta) are known to catalyze
dechlorination reactions.
Length = 73
Score = 41.1 bits (97), Expect = 8e-06
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 38 GETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYL 74
G FL NP +P L DGD ++ +S+AI YL
Sbjct: 36 GGLDTPEFLAMNPNGRVPVLEDGDFVLWESNAILRYL 72
>gnl|CDD|205595 pfam13417, GST_N_3, Glutathione S-transferase, N-terminal domain.
Length = 75
Score = 39.9 bits (94), Expect = 2e-05
Identities = 15/54 (27%), Positives = 20/54 (37%)
Query: 26 EMEISVLVTFAPGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYLVSAYG 79
E + P L NP +P LVD ++ DS AI YL +
Sbjct: 19 EKGLPYEEVEVPPGDKPPELLALNPLGKVPVLVDDGEVLTDSLAIIEYLEELFP 72
>gnl|CDD|166036 PLN02395, PLN02395, glutathione S-transferase.
Length = 215
Score = 41.8 bits (98), Expect = 3e-05
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 24 KKEMEI-SVLVTFAPGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYLVSAY-GKN 81
+K +E +V V GE +L P +P +VDGD I +S AI Y Y +
Sbjct: 22 EKGVEFETVPVDLMKGEHKQPEYLALQPFGVVPVIVDGDYKIFESRAIMRYYAEKYRSQG 81
Query: 82 DVLYPKDSKDRALVDQRLYFDAGEIFPTI 110
L K ++R V+Q L +A P +
Sbjct: 82 PDLLGKTIEERGQVEQWLDVEATSYHPPL 110
>gnl|CDD|239351 cd03053, GST_N_Phi, GST_N family, Class Phi subfamily; composed
of plant-specific class Phi GSTs and related fungal and
bacterial proteins. GSTs are cytosolic dimeric proteins
involved in cellular detoxification by catalyzing the
conjugation of glutathione (GSH) with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. The GST fold contains
an N-terminal TRX-fold domain and a C-terminal alpha
helical domain, with an active site located in a cleft
between the two domains. The class Phi GST subfamily
has experience extensive gene duplication. The
Arabidopsis and Oryza genomes contain 13 and 16 Phi
GSTs, respectively. They are primarily responsible for
herbicide detoxification together with class Tau GSTs,
showing class specificity in substrate preference. Phi
enzymes are highly reactive toward chloroacetanilide
and thiocarbamate herbicides. Some Phi GSTs have other
functions including transport of flavonoid pigments to
the vacuole, shoot regeneration and GSH peroxidase
activity.
Length = 76
Score = 38.4 bits (90), Expect = 8e-05
Identities = 19/44 (43%), Positives = 23/44 (52%)
Query: 31 VLVTFAPGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYL 74
V V GE L +NP +PAL DGDL + +S AI YL
Sbjct: 30 VPVDLTKGEHKSPEHLARNPFGQIPALEDGDLKLFESRAITRYL 73
>gnl|CDD|239348 cd03050, GST_N_Theta, GST_N family, Class Theta subfamily;
composed of eukaryotic class Theta GSTs and bacterial
dichloromethane (DCM) dehalogenase. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. Mammalian
class Theta GSTs show poor GSH conjugating activity
towards the standard substrates, CDNB and ethacrynic
acid, differentiating them from other mammalian GSTs.
GSTT1-1 shows similar cataytic activity as bacterial
DCM dehalogenase, catalyzing the GSH-dependent
hydrolytic dehalogenation of dihalomethanes. This is an
essential process in methylotrophic bacteria to enable
them to use chloromethane and DCM as sole carbon and
energy sources. The presence of polymorphisms in human
GSTT1-1 and its relationship to the onset of diseases
including cancer is subject of many studies. Human
GSTT2-2 exhibits a highly specific sulfatase activity,
catalyzing the cleavage of sulfate ions from aralkyl
sufate esters, but not from aryl or alkyl sulfate
esters.
Length = 76
Score = 38.0 bits (89), Expect = 1e-04
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 38 GETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYLVSAY 78
GE L F K NP +PA+VDGD + +S AI YL +
Sbjct: 36 GEQLTPEFKKINPFGKVPAIVDGDFTLAESVAILRYLARKF 76
>gnl|CDD|239349 cd03051, GST_N_GTT2_like, GST_N family, Saccharomyces cerevisiae
GTT2-like subfamily; composed of predominantly
uncharacterized proteins with similarity to the S.
cerevisiae GST protein, GTT2. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. GTT2, a
homodimer, exhibits GST activity with standard
substrates. Strains with deleted GTT2 genes are viable
but exhibit increased sensitivity to heat shock.
Length = 74
Score = 38.0 bits (89), Expect = 1e-04
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 30 SVLVTFAPGETLDTAFLKQNPRRSLPALV-DGDLLICDSHAINAYL 74
V V A GE FL +NP ++P L D +I +S AI YL
Sbjct: 28 LVTVDLAAGEQRSPEFLAKNPAGTVPVLELDDGTVITESVAICRYL 73
>gnl|CDD|239340 cd03042, GST_N_Zeta, GST_N family, Class Zeta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Zeta GSTs, also known as
maleylacetoacetate (MAA) isomerases, catalyze the
isomerization of MAA to fumarylacetoacetate, the
penultimate step in tyrosine/phenylalanine catabolism,
using GSH as a cofactor. They show little
GSH-conjugating activity towards traditional GST
substrates but display modest GSH peroxidase activity.
They are also implicated in the detoxification of the
carcinogen dichloroacetic acid by catalyzing its
dechlorination to glyoxylic acid.
Length = 73
Score = 37.9 bits (89), Expect = 1e-04
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 38 GETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYL 74
GE L A+ NP+ +P LV L++ S AI YL
Sbjct: 36 GEQLSPAYRALNPQGLVPTLVIDGLVLTQSLAIIEYL 72
>gnl|CDD|222110 pfam13409, GST_N_2, Glutathione S-transferase, N-terminal domain.
This family is closely related to pfam02798.
Length = 68
Score = 36.0 bits (84), Expect = 6e-04
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 1/53 (1%)
Query: 23 RKKEMEISVLVTFAPGETLDTAFLKQNPRRSLPALV-DGDLLICDSHAINAYL 74
K + + L NP +P LV D +I DS AI YL
Sbjct: 13 ELKGLPYEIEEVPLDPWDKPPELLALNPLGKVPVLVLDDGEVITDSLAILEYL 65
>gnl|CDD|239346 cd03048, GST_N_Ure2p_like, GST_N family, Ure2p-like subfamily;
composed of the Saccharomyces cerevisiae Ure2p and
related GSTs. Ure2p is a regulator for nitrogen
catabolism in yeast. It represses the expression of
several gene products involved in the use of poor
nitrogen sources when rich sources are available. A
transmissible conformational change of Ure2p results in
a prion called [Ure3], an inactive, self-propagating
and infectious amyloid. Ure2p displays a GST fold
containing an N-terminal TRX-fold domain and a
C-terminal alpha helical domain, with an active site
located in a cleft between the two domains. The
N-terminal TRX-fold domain is sufficient to induce the
[Ure3] phenotype and is also called the prion domain of
Ure2p. In addition to its role in nitrogen regulation,
Ure2p confers protection to cells against heavy metal
ion and oxidant toxicity, and shows glutathione (GSH)
peroxidase activity. Characterized GSTs in this
subfamily include Aspergillus fumigatus GSTs 1 and 2,
and Schizosaccharomyces pombe GST-I. GSTs are cytosolic
dimeric proteins involved in cellular detoxification by
catalyzing the conjugation of GSH with a wide range of
endogenous and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. GSTs also show GSH
peroxidase activity and are involved in the synthesis
of prostaglandins and leukotrienes.
Length = 81
Score = 36.0 bits (84), Expect = 8e-04
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 31 VLVTFAPGETLDTAFLKQNPRRSLPALVD---GDLLICDSHAINAYLVSAYGK 80
V + GE FLK NP +PA+VD L + +S AI YL Y K
Sbjct: 29 HPVDISKGEQKKPEFLKINPNGRIPAIVDHNGTPLTVFESGAILLYLAEKYDK 81
>gnl|CDD|198287 cd03177, GST_C_Delta_Epsilon, C-terminal, alpha helical domain of
Class Delta and Epsilon Glutathione S-transferases.
Glutathione S-transferase (GST) C-terminal domain
family, Class Delta and Epsilon subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. GSTs also show GSH peroxidase activity
and are involved in the synthesis of prostaglandins and
leukotrienes. The GST fold contains an N-terminal
thioredoxin-fold domain and a C-terminal alpha helical
domain, with an active site located in a cleft between
the two domains. GSH binds to the N-terminal domain
while the hydrophobic substrate occupies a pocket in the
C-terminal domain. The class Delta and Epsilon subfamily
is made up primarily of insect GSTs, which play major
roles in insecticide resistance by facilitating
reductive dehydrochlorination of insecticides or
conjugating them with GSH to produce water-soluble
metabolites that are easily excreted. They are also
implicated in protection against cellular damage by
oxidative stress.
Length = 117
Score = 36.0 bits (84), Expect = 0.001
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 90 KDRALVDQRLYFDAGEIFPTI 110
K RA+V+QRL+FD+G ++ +
Sbjct: 1 KKRAIVNQRLFFDSGTLYQRL 21
>gnl|CDD|185068 PRK15113, PRK15113, glutathione S-transferase; Provisional.
Length = 214
Score = 36.9 bits (86), Expect = 0.002
Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 31 VLVTFAPGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYLVSAYGKNDV--LYPKD 88
V GE L + + R +P L D + +S AI YL + +YP D
Sbjct: 36 KTVDLDAGEHLQPTYQGYSLTRRVPTLQHDDFELSESSAIAEYLEERFAPPAWERIYPAD 95
Query: 89 SKDRALVDQ 97
+ RA Q
Sbjct: 96 LQARARARQ 104
>gnl|CDD|217234 pfam02798, GST_N, Glutathione S-transferase, N-terminal domain.
Function: conjugation of reduced glutathione to a
variety of targets. Also included in the alignment, but
are not GSTs: * S-crystallins from squid. Similarity to
GST previously noted. * Eukaryotic elongation factors
1-gamma. Not known to have GST activity; similarity not
previously recognised. * HSP26 family of stress-related
proteins. including auxin-regulated proteins in plants
and stringent starvation proteins in E. coli. Not known
to have GST activity. Similarity not previously
recognised. The glutathione molecule binds in a cleft
between N and C-terminal domains - the catalytically
important residues are proposed to reside in the
N-terminal domain.
Length = 74
Score = 32.7 bits (75), Expect = 0.012
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 31 VLVTFAPGETLDTAFLKQNPRRS-LPALVDGDLLICDSHAINAYL 74
V V F+ GE +LK NP +PAL DG + +S AI YL
Sbjct: 29 VRVDFS-GEHKSPEWLKLNPLMGQVPALEDGGKKLTESLAIARYL 72
>gnl|CDD|239341 cd03043, GST_N_1, GST_N family, unknown subfamily 1; composed of
uncharacterized proteins, predominantly from bacteria,
with similarity to GSTs. GSTs are cytosolic dimeric
proteins involved in cellular detoxification by
catalyzing the conjugation of glutathione (GSH) with a
wide range of endogenous and xenobiotic alkylating
agents, including carcinogens, therapeutic drugs,
environmental toxins and products of oxidative stress.
GSTs also show GSH peroxidase activity and are involved
in the synthesis of prostaglandins and leukotrienes.
The GST fold contains an N-terminal TRX-fold domain and
a C-terminal alpha helical domain, with an active site
located in a cleft between the two domains.
Length = 73
Score = 31.4 bits (72), Expect = 0.033
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 31 VLVTFAPGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYL 74
+LV +T L+ +P +P LVDG +++ DS AI YL
Sbjct: 30 ILVPLYTPDTRA-RILEFSPTGKVPVLVDGGIVVWDSLAICEYL 72
>gnl|CDD|172475 PRK13972, PRK13972, GSH-dependent disulfide bond oxidoreductase;
Provisional.
Length = 215
Score = 32.7 bits (74), Expect = 0.040
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 10/89 (11%)
Query: 31 VLVTFAPGETLDTAFLKQNPRRSLPALVDGD-------LLICDSHAINAYLVSAYGKNDV 83
+ V G FL+ +P +PA+VD L + +S AI YL G +
Sbjct: 29 IKVDLGKGGQFRPEFLRISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTG---L 85
Query: 84 LYPKDSKDRALVDQRLYFDAGEIFPTIKQ 112
++++RA Q L++ G + P + Q
Sbjct: 86 FLSHETRERAATLQWLFWQVGGLGPMLGQ 114
>gnl|CDD|166114 PLN02473, PLN02473, glutathione S-transferase.
Length = 214
Score = 31.5 bits (71), Expect = 0.10
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 46 LKQNPRRSLPALVDGDLLICDSHAINAYLVSAYGKNDV-LYPKDSKDRALVDQ 97
L + P +PA+ DGDL + +S AI Y + Y L K + RA+VDQ
Sbjct: 46 LLRQPFGQVPAIEDGDLKLFESRAIARYYATKYADQGTDLLGKTLEHRAIVDQ 98
>gnl|CDD|239357 cd03059, GST_N_SspA, GST_N family, Stringent starvation protein A
(SspA) subfamily; SspA is a RNA polymerase
(RNAP)-associated protein required for the lytic
development of phage P1 and for stationary
phase-induced acid tolerance of E. coli. It is
implicated in survival during nutrient starvation. SspA
adopts the GST fold with an N-terminal TRX-fold domain
and a C-terminal alpha helical domain, but it does not
bind glutathione (GSH) and lacks GST activity. SspA is
highly conserved among gram-negative bacteria. Related
proteins found in Neisseria (called RegF), Francisella
and Vibrio regulate the expression of virulence factors
necessary for pathogenesis.
Length = 73
Score = 29.6 bits (67), Expect = 0.16
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 49 NPRRSLPALVDGDLLICDSHAINAYL 74
NP ++P LVD DL++ +S I YL
Sbjct: 44 NPYGTVPTLVDRDLVLYESRIIMEYL 69
>gnl|CDD|239355 cd03057, GST_N_Beta, GST_N family, Class Beta subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Unlike mammalian GSTs which detoxify a broad
range of compounds, the bacterial class Beta GSTs
exhibit limited GSH conjugating activity with a narrow
range of substrates. In addition to GSH conjugation,
they also bind antibiotics and reduce the antimicrobial
activity of beta-lactam drugs. The structure of the
Proteus mirabilis enzyme reveals that the cysteine in
the active site forms a covalent bond with GSH.
Length = 77
Score = 29.0 bits (66), Expect = 0.27
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 31 VLVTFAPGETLDTAFLKQNPRRSLPALVDGD-LLICDSHAINAYL 74
V V +L NP+ +PALV D ++ +S AI YL
Sbjct: 28 VRVDLRTKTQKGADYLAINPKGQVPALVLDDGEVLTESAAILQYL 72
>gnl|CDD|239350 cd03052, GST_N_GDAP1, GST_N family, Ganglioside-induced
differentiation-associated protein 1 (GDAP1) subfamily;
GDAP1 was originally identified as a highly expressed
gene at the differentiated stage of GD3
synthase-transfected cells. More recently, mutations in
GDAP1 have been reported to cause both axonal and
demyelinating autosomal-recessive Charcot-Marie-Tooth
(CMT) type 4A neuropathy. CMT is characterized by slow
and progressive weakness and atrophy of muscles.
Sequence analysis of GDAP1 shows similarities and
differences with GSTs; it appears to contain both
N-terminal TRX-fold and C-terminal alpha helical
domains of GSTs, however, it also contains additional
C-terminal transmembrane domains unlike GSTs. GDAP1 is
mainly expressed in neuronal cells and is localized in
the mitochondria through its transmembrane domains. It
does not exhibit GST activity using standard
substrates.
Length = 73
Score = 29.1 bits (65), Expect = 0.27
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 45 FLKQNPRRSLPALVDGDLLICDSHAINAYL 74
F++ NP +P L+ GD +ICD I YL
Sbjct: 43 FMRLNPTGEVPVLIHGDNIICDPTQIIDYL 72
>gnl|CDD|100001 cd04955, GT1_like_6, This family is most closely related to the GT1
family of glycosyltransferases. Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. This group of glycosyltransferases
is most closely related to the previously defined
glycosyltransferase family 1 (GT1). The members of this
family may transfer UDP, ADP, GDP, or CMP linked sugars.
The diverse enzymatic activities among members of this
family reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found in
certain bacteria and Archaea.
Length = 363
Score = 30.3 bits (69), Expect = 0.30
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 60 GDLLICDSHAINAYLVSAYGKNDVLYP 86
D LI DS I YL YG++ P
Sbjct: 144 ADRLIADSPGIKEYLKEKYGRDSTYIP 170
>gnl|CDD|223453 COG0376, KatG, Catalase (peroxidase I) [Inorganic ion transport and
metabolism].
Length = 730
Score = 30.5 bits (69), Expect = 0.33
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 12 DKEIAELKEEIRKKEMEISVLVTFA 36
D +IA LK +I + +S LV+ A
Sbjct: 448 DADIAALKAKILASGLSVSQLVSTA 472
>gnl|CDD|221120 pfam11488, Lge1, Transcriptional regulatory protein LGE1. This
family of proteins is conserved from fungi to human. In
yeasts it is involved in the ubiquitination of histones
H2A and H2B. This ubiquitination step is a vital one in
the regulation of the transcriptional activity of RNA
polymerase II. In S. cerevisiae, Rad6 and Bre1 are
present in a complex, also containing Lge1, that is
required for H2B ubiquitination. Bre1 is the H2B
ubiquitin ligase that interacts with acidic activators,
such as Gal4, and recruits Rad6 and its binding partner
Lge1 to target promoters. In S. pombe the equivalent
protein to Lge1 appears to be Shf1.
Length = 75
Score = 28.5 bits (64), Expect = 0.35
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 9 DNQDKEIAELKEEIRKKEMEISVLVTFAPGETL 41
++ D+++ ELK + K E+E+++L T + L
Sbjct: 28 ESLDQKLEELKLQKLKLELELALLETQVERDAL 60
>gnl|CDD|236537 PRK09481, sspA, stringent starvation protein A; Provisional.
Length = 211
Score = 29.3 bits (66), Expect = 0.66
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 49 NPRRSLPALVDGDLLICDSHAINAYL 74
NP +S+P LVD +L + +S I YL
Sbjct: 54 NPYQSVPTLVDRELTLYESRIIMEYL 79
>gnl|CDD|220174 pfam09314, DUF1972, Domain of unknown function (DUF1972). Members
of this family of functionally uncharacterized domains
are found in bacterial glycosyltransferases and
rhamnosyltransferases.
Length = 185
Score = 28.9 bits (65), Expect = 0.68
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 61 DLLICDSHAINAYLVSAYG 79
DL+I D+ I Y+ S YG
Sbjct: 155 DLVISDNKGIEKYIQSEYG 173
>gnl|CDD|173828 cd08200, catalase_peroxidase_2, C-terminal non-catalytic domain
of catalase-peroxidases. This is a subgroup of
heme-dependent peroxidases of the plant superfamily
that share a heme prosthetic group and catalyze a
multistep oxidative reaction involving hydrogen
peroxide as the electron acceptor. Catalase-peroxidases
can exhibit both catalase and broad-spectrum peroxidase
activities depending on the steady-state concentration
of hydrogen peroxide. These enzymes are found in many
archaeal and bacterial organisms where they neutralize
potentially lethal hydrogen peroxide molecules
generated during photosynthesis or stationary phase.
Along with related intracellular fungal and plant
peroxidases, catalase-peroxidases belong to plant
peroxidase superfamily. Unlike the eukaryotic enzymes,
they are typically comprised of two homologous domains
that probably arose via a single gene duplication
event. The heme binding motif is present only in the
N-terminal domain; the function of the C-terminal
domain is not clear.
Length = 297
Score = 28.7 bits (65), Expect = 0.95
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 12 DKEIAELKEEIRKKEMEISVLVTFA 36
D +IA LK +I + +S LV+ A
Sbjct: 13 DADIAALKAKILASGLTVSELVSTA 37
>gnl|CDD|239337 cd03039, GST_N_Sigma_like, GST_N family, Class Sigma_like;
composed of GSTs belonging to class Sigma and similar
proteins, including GSTs from class Mu, Pi and Alpha.
GSTs are cytosolic dimeric proteins involved in
cellular detoxification by catalyzing the conjugation
of glutathione (GSH) with a wide range of endogenous
and xenobiotic alkylating agents, including
carcinogens, therapeutic drugs, environmental toxins
and products of oxidative stress. The GST fold contains
an N-terminal TRX-fold domain and a C-terminal alpha
helical domain, with an active site located in a cleft
between the two domains. Vertebrate class Sigma GSTs
are characterized as GSH-dependent hematopoietic
prostaglandin (PG) D synthases and are responsible for
the production of PGD2 by catalyzing the isomerization
of PGH2. The functions of PGD2 include the maintenance
of body temperature, inhibition of platelet
aggregation, bronchoconstriction, vasodilation and
mediation of allergy and inflammation. Other class
Sigma members include the class II insect GSTs,
S-crystallins from cephalopods and 28-kDa GSTs from
parasitic flatworms. Drosophila GST2 is associated with
indirect flight muscle and exhibits preference for
catalyzing GSH conjugation to lipid peroxidation
products, indicating an anti-oxidant role. S-crystallin
constitutes the major lens protein in cephalopod eyes
and is responsible for lens transparency and proper
refractive index. The 28-kDa GST from Schistosoma is a
multifunctional enzyme, exhibiting GSH transferase, GSH
peroxidase and PGD2 synthase activities, and may play
an important role in host-parasite interactions. Also
members are novel GSTs from the fungus Cunninghamella
elegans, designated as class Gamma, and from the
protozoan Blepharisma japonicum, described as a
light-inducible GST.
Length = 72
Score = 27.5 bits (62), Expect = 0.96
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 33 VTFAPGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYL 74
V E + P LP L + S+AI YL
Sbjct: 29 VRITYEEWPELDLKPTLPFGQLPVLEIDGKKLTQSNAILRYL 70
>gnl|CDD|144673 pfam01166, TSC22, TSC-22/dip/bun family.
Length = 57
Score = 26.6 bits (59), Expect = 1.6
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 1 MNAMRDKFDNQDKEIAELKEEIRKKEMEISVLVTFAPGETLDTAFLKQ 48
M A+R++ + ++I EL+E+ + E E ++L + A E L+ +
Sbjct: 9 MYAVREEVEVLKEQIKELEEKNSQLERENTLLKSLASPEQLEQLQSQL 56
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation,
interacts with SMC proteins [Cell division and
chromosome partitioning].
Length = 622
Score = 27.3 bits (60), Expect = 4.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 1 MNAMRDKFDNQDKEIAELKEEIRKKEMEISVL 32
+NAM+ K ++ +LK EI KE EI L
Sbjct: 318 VNAMKQKSQEWPGKLEKLKSEIELKEEEIKAL 349
>gnl|CDD|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA
binding. This is the middle region of a family of TATA
element modulatory factor 1 proteins conserved in
eukaryotes that contains at its N-terminal section a
number of leucine zippers that could potentially form
coiled coil structures. The whole proteins bind to the
TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding
of TATA binding protein. TMFs are evolutionarily
conserved golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells.
Length = 74
Score = 25.7 bits (57), Expect = 4.3
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 4 MRDKFDNQDKEIAELKEEIRKKEMEISVL 32
+R K +KEIAELK+++ K E E+ L
Sbjct: 38 LRAKNKELEKEIAELKKKLEKLEKELENL 66
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 26.9 bits (60), Expect = 4.6
Identities = 7/29 (24%), Positives = 18/29 (62%)
Query: 2 NAMRDKFDNQDKEIAELKEEIRKKEMEIS 30
N++ + + EI L++EI++ E +++
Sbjct: 425 NSLEKEIKQLEAEIKALEKEIKELEKQLT 453
>gnl|CDD|181416 PRK08415, PRK08415, enoyl-(acyl carrier protein) reductase;
Provisional.
Length = 274
Score = 26.6 bits (59), Expect = 4.7
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 10 NQDKEIAELKEEIRKKEMEISVLV---TFAPGETLDTAFLK 47
++ + L E ++K +I +V FAP E L+ +FL+
Sbjct: 65 SKPEHFKSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFLE 105
>gnl|CDD|183298 PRK11752, PRK11752, putative S-transferase; Provisional.
Length = 264
Score = 26.8 bits (60), Expect = 4.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 38 GETLDTAFLKQNPRRSLPALVD--GD--LLICDSHAINAYLVSAYGKNDVLYPKDSKDRA 93
G+ + F++ NP +PAL+D G+ + + +S AI YL +G PKD R
Sbjct: 85 GDQFSSGFVEINPNSKIPALLDRSGNPPIRVFESGAILLYLAEKFGA---FLPKDLAART 141
Query: 94 LV 95
Sbjct: 142 ET 143
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 26.1 bits (58), Expect = 5.4
Identities = 6/29 (20%), Positives = 16/29 (55%)
Query: 8 FDNQDKEIAELKEEIRKKEMEISVLVTFA 36
+ +KE+ EL+ E+ ++E++ +
Sbjct: 51 LEKLEKELEELEAELARRELKAEAKKMLS 79
>gnl|CDD|239342 cd03044, GST_N_EF1Bgamma, GST_N family, Gamma subunit of
Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma
is part of the eukaryotic translation elongation
factor-1 (EF1) complex which plays a central role in
the elongation cycle during protein biosynthesis. EF1
consists of two functionally distinct units, EF1A and
EF1B. EF1A catalyzes the GTP-dependent binding of
aminoacyl-tRNA to the ribosomal A site concomitant with
the hydrolysis of GTP. The resulting inactive EF1A:GDP
complex is recycled to the active GTP form by the
guanine-nucleotide exchange factor EF1B, a complex
composed of at least two subunits, alpha and gamma.
Metazoan EFB1 contain a third subunit, beta. The EF1B
gamma subunit contains a GST fold consisting of an
N-terminal TRX-fold domain and a C-terminal alpha
helical domain. The GST-like domain of EF1Bgamma is
believed to mediate the dimerization of the EF1
complex, which in yeast is a dimer of the heterotrimer
EF1A:EF1Balpha:EF1Bgamma. In addition to its role in
protein biosynthesis, EF1Bgamma may also display other
functions. The recombinant rice protein has been shown
to possess GSH conjugating activity. The yeast
EF1Bgamma binds membranes in a calcium dependent manner
and is also part of a complex that binds to the msrA
(methionine sulfoxide reductase) promoter suggesting a
function in the regulation of its gene expression.
Length = 75
Score = 25.3 bits (56), Expect = 5.4
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 28 EISVLVTFAPGETLDTAFLKQNPRRSLPALV--DGDLLICDSHAINAYLVS 76
++ ++ E FLK+ P +PA DG L +S+AI Y+ +
Sbjct: 25 DVEIVDFQPGKENKTPEFLKKFPLGKVPAFEGADGFCLF-ESNAIAYYVAN 74
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 26.6 bits (59), Expect = 5.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 7 KFDNQDKEIAELKEEIRKKEMEISVL 32
K D KEI + K EI+K + EI+ L
Sbjct: 67 KIDELQKEIDQSKAEIKKLQKEIAEL 92
>gnl|CDD|177879 PLN02235, PLN02235, ATP citrate (pro-S)-lyase.
Length = 423
Score = 26.7 bits (59), Expect = 6.5
Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 15 IAELKEEIRKKEMEISVLVTFAPGETLDTAFLKQNPRRSLPALVDG 60
IA L EIR K +E + FA + LD FL+ NP LVDG
Sbjct: 167 IATLPLEIRGK-IEEFIKGVFAVFQDLDFTFLEMNPF----TLVDG 207
>gnl|CDD|239378 cd03080, GST_N_Metaxin_like, GST_N family, Metaxin subfamily,
Metaxin-like proteins; a heterogenous group of
proteins, predominantly uncharacterized, with
similarity to metaxins and GSTs. Metaxin 1 is a
component of a preprotein import complex of the
mitochondrial outer membrane. It extends to the cytosol
and is anchored to the mitochondrial membrane through
its C-terminal domain. In mice, metaxin is required for
embryonic development. In humans, alterations in the
metaxin gene may be associated with Gaucher disease.
One characterized member of this subgroup is a novel
GST from Rhodococcus with toluene o-monooxygenase and
gamma-glutamylcysteine synthetase activities. Also
members are the cadmium-inducible lysosomal protein
CDR-1 and its homologs from C. elegans, and the failed
axon connections (fax) protein from Drosophila. CDR-1
is an integral membrane protein that functions to
protect against cadmium toxicity and may also have a
role in osmoregulation to maintain salt balance in C.
elegans. The fax gene of Drosophila was identified as a
genetic modifier of Abelson (Abl) tyrosine kinase. The
fax protein is localized in cellular membranes and is
expressed in embryonic mesoderm and axons of the
central nervous system.
Length = 75
Score = 24.9 bits (55), Expect = 7.1
Identities = 13/43 (30%), Positives = 18/43 (41%)
Query: 37 PGETLDTAFLKQNPRRSLPALVDGDLLICDSHAINAYLVSAYG 79
P E K++P+ LP + I DS I +L YG
Sbjct: 33 PYENKFGGLAKRSPKGKLPFIELNGEKIADSELIIDHLEEKYG 75
>gnl|CDD|203679 pfam07544, Med9, RNA polymerase II transcription mediator complex
subunit 9. This family of Med9 proteins is conserved
in yeasts. It forms part of the middle region of
Mediator. Med9 has two functional domains. The
species-specific amino-terminal half (aa 1-63) plays a
regulatory role in transcriptional regulation, whereas
this well-conserved carboxy-terminal half (aa 64-149)
has a more fundamental function involved in direct
binding to the amino-terminal portions of Med4 and Med7
and the assembly of Med9 into the Middle module. Also,
some unidentified factor(s) in med9 extracts may impact
the binding of TFIID to the promoter.
Length = 83
Score = 24.9 bits (55), Expect = 8.3
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 9 DNQDKEIAELKEEIRKKE 26
+ Q+ EI EL+E+I +K
Sbjct: 55 EEQEAEIEELEEQIARKR 72
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 26.4 bits (59), Expect = 8.4
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 4 MRDKFDNQDKEIAELKEEIRKKEMEISVLV 33
++ K++ ++I EL+E+I + + + VLV
Sbjct: 243 LKRKYEEIYEKIRELEEKIAELKDKKGVLV 272
>gnl|CDD|225888 COG3352, FlaC, Putative archaeal flagellar protein C [Cell
motility and secretion].
Length = 157
Score = 25.6 bits (56), Expect = 9.1
Identities = 9/34 (26%), Positives = 21/34 (61%)
Query: 1 MNAMRDKFDNQDKEIAELKEEIRKKEMEISVLVT 34
+ ++ + + Q K++ ++KEE+ + E I LV+
Sbjct: 60 LGKVKIEIEGQKKQLQDIKEELERLEENIKDLVS 93
>gnl|CDD|227259 COG4922, COG4922, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 25.6 bits (56), Expect = 9.2
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 43 TAFLKQNPRRSLP---ALVDGDLLICDSHAI 70
T F K+ PR S + DGDL+ H
Sbjct: 54 TEFFKEKPRISTKIVRVIADGDLVTVHYHQT 84
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 26.2 bits (58), Expect = 9.5
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 1 MNAMRDKFDNQDKEIAELKEEIRKKEMEISVL 32
+ +R++ + +E+ ELKEEI + E EIS+L
Sbjct: 276 LEELREELEELQEELLELKEEIEELEGEISLL 307
>gnl|CDD|239374 cd03076, GST_N_Pi, GST_N family, Class Pi subfamily; GSTs are
cytosolic dimeric proteins involved in cellular
detoxification by catalyzing the conjugation of
glutathione (GSH) with a wide range of endogenous and
xenobiotic alkylating agents, including carcinogens,
therapeutic drugs, environmental toxins and products of
oxidative stress. The GST fold contains an N-terminal
TRX-fold domain and a C-terminal alpha helical domain,
with an active site located in a cleft between the two
domains. Class Pi GST is a homodimeric eukaryotic
protein. The human GSTP1 is mainly found in
erythrocytes, kidney, placenta and fetal liver. It is
involved in stress responses and in cellular
proliferation pathways as an inhibitor of JNK (c-Jun
N-terminal kinase). Following oxidative stress,
monomeric GSTP1 dissociates from JNK and dimerizes,
losing its ability to bind JNK and causing an increase
in JNK activity, thereby promoting apoptosis. GSTP1 is
expressed in various tumors and is the predominant GST
in a wide range of cancer cells. It has been implicated
in the development of multidrug-resistant tumours.
Length = 73
Score = 24.6 bits (54), Expect = 9.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 54 LPALVDGDLLICDSHAINAYL 74
LP DGDL + S+AI +L
Sbjct: 50 LPCFKDGDLTLVQSNAILRHL 70
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.137 0.391
Gapped
Lambda K H
0.267 0.0788 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,619,362
Number of extensions: 691578
Number of successful extensions: 1173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1166
Number of HSP's successfully gapped: 73
Length of query: 149
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 61
Effective length of database: 7,034,450
Effective search space: 429101450
Effective search space used: 429101450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)