BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13753
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ENZ|A Chain A, Solution Structure Of The Second C1 Domain From Human
Protein Kinase C Theta
Length = 65
Score = 55.5 bits (132), Expect = 2e-08, Method: Composition-based stats.
Identities = 26/54 (48%), Positives = 31/54 (57%)
Query: 1 MDTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
+D H+F+ Y YK T C+ C +L G RQGLKC C NVH CQ KV C
Sbjct: 9 IDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLC 62
Score = 35.4 bits (80), Expect = 0.024, Method: Composition-based stats.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 117 AAGKLS-SHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
++GK+ H K Y+ + SP G RQGLKC C NVH CQ KV C
Sbjct: 5 SSGKIDMPHRFKVYNYK-SPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLC 62
>pdb|3UEJ|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UEJ|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UGI|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGI|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGL|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGL|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
Length = 65
Score = 55.1 bits (131), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
SH+F+ Y Y T CD C +L G +QGLKC C NVH C+EKV C+
Sbjct: 9 SHRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCE 60
Score = 37.0 bits (84), Expect = 0.010, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 121 LSSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 175
+ SH K Y+ SP G +QGLKC C NVH C+EKV C+
Sbjct: 7 VGSHRFKVYNYM-SPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCE 60
>pdb|4FKD|A Chain A, Identification Of The Activator Binding Residues In The
Second Cysteine-rich Regulatory Domain Of Protein
Kinase C Theta
Length = 65
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
SH+F+ Y YK T C+ C +L G RQGLKC C NVH CQ KV C+
Sbjct: 9 SHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCE 60
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 121 LSSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 175
+ SH K Y+ + SP G RQGLKC C NVH CQ KV C+
Sbjct: 7 VGSHRFKVYNYK-SPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCE 60
>pdb|3UEY|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UEY|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
Length = 65
Score = 53.9 bits (128), Expect = 7e-08, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
SH+F+ + Y T CD C +L G +QGLKC C NVH C+EKV C+
Sbjct: 9 SHRFKVFNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCE 60
Score = 35.8 bits (81), Expect = 0.021, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 175
G +QGLKC C NVH C+EKV C+
Sbjct: 32 GLVKQGLKCEDCGMNVHHKCREKVANLCE 60
>pdb|3UGD|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
pdb|3UGD|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase C Delta
Length = 65
Score = 53.1 bits (126), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
SH+F+ + Y T CD C +L G +QGLKC C NVH C+EKV C+
Sbjct: 9 SHRFKVHNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCE 60
Score = 35.4 bits (80), Expect = 0.024, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 175
G +QGLKC C NVH C+EKV C+
Sbjct: 32 GLVKQGLKCEDCGMNVHHKCREKVANLCE 60
>pdb|1PTQ|A Chain A, Protein Kinase C Delta Cys2 Domain
pdb|1PTR|A Chain A, Protein Kinase C Delta Cys2 Domain Complexed With
Phorbol- 13-Acetate
Length = 50
Score = 52.8 bits (125), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/50 (48%), Positives = 29/50 (58%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
H+F+ Y Y T CD C +L G +QGLKC C NVH C+EKV C
Sbjct: 1 HRFKVYNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLC 50
Score = 35.0 bits (79), Expect = 0.038, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
G +QGLKC C NVH C+EKV C
Sbjct: 23 GLVKQGLKCEDCGMNVHHKCREKVANLC 50
>pdb|3UFF|A Chain A, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
pdb|3UFF|B Chain B, Structural And Functional Characterization Of An
Anesthetic Binding Site In The Second Cysteine-Rich
Domain Of Protein Kinase Cdelta
Length = 65
Score = 51.2 bits (121), Expect = 4e-07, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 30/52 (57%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
SH+F+ Y T CD C +L G +QGLKC C NVH C+EKV C+
Sbjct: 9 SHRFKVTNYMSPTFCDHCGSLLWGLVKQGLKCEDCGMNVHHKCREKVANLCE 60
Score = 35.4 bits (80), Expect = 0.029, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 175
G +QGLKC C NVH C+EKV C+
Sbjct: 32 GLVKQGLKCEDCGMNVHHKCREKVANLCE 60
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin
Length = 466
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 2 DTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLL 61
+ +H F+ +T++ C+ C+ + G QG++C C NVH C + VP CQP + +
Sbjct: 210 EKTHNFKVHTFRGPHWCEYCANFMWGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRI 269
Query: 62 RR 63
++
Sbjct: 270 KK 271
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 146 GGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRR 183
G QG++C C NVH C + VP CQP + +++
Sbjct: 234 WGLIAQGVRCSDCGLNVHKQCSKHVPNDCQPDLKRIKK 271
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
+ H+F+ +TY T CD C +L G QG+KC C NVH C VP+ C
Sbjct: 101 SKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMNVPSLC 152
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
+H+F +K+ T C C+ + G +QG +C++C VH C E V C
Sbjct: 37 NHKFTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSC 87
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
G +QG +C++C VH C E V C
Sbjct: 60 GFGKQGFQCQVCSFVVHKRCHEFVTFSC 87
>pdb|2DB6|A Chain A, Solution Structure Of Rsgi Ruh-051, A C1 Domain Of Stac3
From Human Cdna
Length = 74
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 2 DTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKV 50
D H+F+++ +KK CD+C++++ + + GL+C+ CKTN+H CQ V
Sbjct: 15 DKPHKFKDHFFKKPKFCDVCARMIVLNNKFGLRCKNCKTNIHEHCQSYV 63
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 148 HTRQGLKCRLCKTNVHVDCQEKV 170
+ + GL+C+ CKTN+H CQ V
Sbjct: 41 NNKFGLRCKNCKTNIHEHCQSYV 63
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1)
Length = 463
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQ 64
H F+ +T++ C+ C+ + G QG+KC C NVH C + VP C+P + +++
Sbjct: 210 HNFKVHTFRGPHWCEYCANFMWGLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKV 269
Query: 65 KS 66
S
Sbjct: 270 YS 271
Score = 34.7 bits (78), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQKS 186
G QG+KC C NVH C + VP C+P + +++ S
Sbjct: 232 GLIAQGVKCADCGLNVHKQCSKMVPNDCKPDLKHVKKVYS 271
>pdb|2ELI|A Chain A, Solution Structure Of The Second Phorbol
EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
Kinase C Alpha Type
Length = 85
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
+ H+F+ +TY T CD C +L G QG+KC C NVH C VP+ C
Sbjct: 16 SKHKFKIHTYGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLC 67
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 122 SSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
S H+ K ++ SP G QG+KC C NVH C VP+ C
Sbjct: 16 SKHKFKIHT-YGSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHKQCVINVPSLC 67
>pdb|1TBN|A Chain A, Nmr Structure Of A Protein Kinase C-G Phorbol-Binding
Domain, Minimized Average Structure
pdb|1TBO|A Chain A, Nmr Structure Of A Protein Kinase C-g Phorbol-binding
Domain, 30 Structures
Length = 82
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
H+F+ ++Y T CD C +L G QG+KC C+ NVH C VP+ C
Sbjct: 11 HKFRLHSYSSPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLC 60
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
G QG+KC C+ NVH C VP+ C
Sbjct: 33 GLVHQGMKCSCCEMNVHRRCVRSVPSLC 60
>pdb|3KY9|A Chain A, Autoinhibited Vav1
pdb|3KY9|B Chain B, Autoinhibited Vav1
Length = 587
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVP 51
H FQ +++++ T C C +LRG QG +C C+ + H +C +VP
Sbjct: 517 NGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVP 565
>pdb|3BJI|A Chain A, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|B Chain B, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 378
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVP 51
H FQ +++++ T C C +LRG QG +C C+ + H +C +VP
Sbjct: 326 NGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCHRCRASAHKECLGRVP 374
>pdb|2VRW|B Chain B, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 406
Score = 43.9 bits (102), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVP 51
H FQ +++++ T C C +LRG QG +C C+ H +C +VP
Sbjct: 345 NGHDFQMFSFEETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP 393
>pdb|2ENN|A Chain A, Solution Structure Of The First C1 Domain From Human
Protein Kinase C Theta
Length = 77
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
H+F + + T C +C + + G +QG +CR C +H C +KV AKC
Sbjct: 24 HEFTATFFPQPTFCSVCHEFVWGLNKQGYQCRQCNAAIHKKCIDKVIAKC 73
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
G +QG +CR C +H C +KV AKC
Sbjct: 46 GLNKQGYQCRQCNAAIHKKCIDKVIAKC 73
>pdb|2YUU|A Chain A, Solution Structure Of The First Phorbol
EstersDIACYLGLYCEROL BINDING DOMAIN OF HUMAN PROTEIN
Kinase C, Delta
Length = 83
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
+H+F + + T C +C + G +QG KCR C +H C +K+ +C
Sbjct: 17 NHEFIATFFGQPTFCSVCKDFVWGLNKQGYKCRQCNAAIHKKCIDKIIGRC 67
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
G +QG KCR C +H C +K+ +C
Sbjct: 40 GLNKQGYKCRQCNAAIHKKCIDKIIGRC 67
>pdb|1FAQ|A Chain A, Raf-1 Cysteine Rich Domain, Nmr, 27 Structures
pdb|1FAR|A Chain A, Raf-1 Cysteine Rich Domain, Nmr, Minimized Average
Structure
Length = 52
Score = 41.6 bits (96), Expect = 4e-04, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
T+H F T+ K+ CDIC + L G +C+ C H C KVP C
Sbjct: 2 TTHNFARKTFLKLAFCDICQKFL----LNGFRCQTCGYKFHEHCSTKVPTMC 49
>pdb|2E73|A Chain A, Solution Structure Of The Phorbol EstersDIACYLGLYCEROL
Binding Domain Of Protein Kinase C Gamma
Length = 77
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54
+ H+F +K+ T C C+ + G +QGL+C++C VH C E V +C
Sbjct: 6 SGHKFTARFFKQPTFCSHCTDFIWGIGKQGLQCQVCSFVVHRRCHEFVTFEC 57
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKC 174
G +QGL+C++C VH C E V +C
Sbjct: 30 GIGKQGLQCQVCSFVVHRRCHEFVTFEC 57
>pdb|1Y8F|A Chain A, Solution Structure Of The Munc13-1 C1-domain
Length = 66
Score = 39.7 bits (91), Expect = 0.001, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
H F+ +T T C C +L G RQG++C C H CQ+ + A C+
Sbjct: 14 HNFEVWTATTPTYCYECEGLLWGIARQGMRCTECGVKCHEKCQDLLNADCK 64
Score = 29.3 bits (64), Expect = 1.8, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 147 GHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 175
G RQG++C C H CQ+ + A C+
Sbjct: 36 GIARQGMRCTECGVKCHEKCQDLLNADCK 64
>pdb|1R79|A Chain A, Solution Structure Of The C1 Domain Of The Human
Diacylglycerol Kinase Delta
Length = 84
Score = 33.9 bits (76), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 5 HQFQEYTY---KKITPCD-ICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
HQ+ E K T CD C VLR Q +C CK VH C+E + KC
Sbjct: 28 HQWLEGNLPVSAKCTVCDKTCGSVLR---LQDWRCLWCKAMVHTSCKESLLTKCS 79
>pdb|4B6D|A Chain A, Structure Of The Atypical C1 Domain Of Mgcracgap
pdb|4B6D|B Chain B, Structure Of The Atypical C1 Domain Of Mgcracgap
pdb|4B6D|C Chain C, Structure Of The Atypical C1 Domain Of Mgcracgap
pdb|4B6D|D Chain D, Structure Of The Atypical C1 Domain Of Mgcracgap
pdb|4B6D|E Chain E, Structure Of The Atypical C1 Domain Of Mgcracgap
pdb|4B6D|F Chain F, Structure Of The Atypical C1 Domain Of Mgcracgap
Length = 61
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQP 56
H F T K C C + ++ + LKCR C+ H +C+++ P C P
Sbjct: 9 HDFVSKTVIKPESCVPCGKRIK-FGKLSLKCRDCRVVSHPECRDRCPLPCIP 59
>pdb|1RFH|A Chain A, Solution Structure Of The C1 Domain Of Nore1, A Novel
Ras Effector
Length = 59
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 18 CDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
CD+C R RQ L+C CK H +C+ + C+
Sbjct: 25 CDLCG---REVLRQALRCANCKFTCHSECRSLIQLDCR 59
>pdb|2FNF|X Chain X, C1 Domain Of Nore1
Length = 72
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 4 SHQFQEYTYKKI-TPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQ 55
H+F E + CD+C + + RQ L+C CK H +C+ + C+
Sbjct: 23 GHRFVELALRGGPGWCDLCGREV---LRQALRCANCKFTCHSECRSLIQLDCR 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,732,280
Number of Sequences: 62578
Number of extensions: 260869
Number of successful extensions: 469
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 412
Number of HSP's gapped (non-prelim): 60
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)