Query psy13753
Match_columns 229
No_of_seqs 247 out of 1399
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 19:37:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13753.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13753hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4236|consensus 100.0 1.9E-30 4E-35 239.3 1.3 164 3-178 144-321 (888)
2 KOG0696|consensus 99.9 1.7E-28 3.6E-33 221.4 0.7 125 3-182 44-168 (683)
3 KOG0694|consensus 99.8 1.9E-21 4E-26 184.0 2.2 134 3-184 157-290 (694)
4 PF00130 C1_1: Phorbol esters/ 99.5 5.7E-14 1.2E-18 93.4 4.7 52 5-56 1-52 (53)
5 cd00029 C1 Protein kinase C co 99.3 1E-12 2.2E-17 85.9 3.1 50 5-54 1-50 (50)
6 PF00130 C1_1: Phorbol esters/ 99.3 1.8E-12 3.8E-17 86.2 3.1 52 124-176 1-52 (53)
7 KOG0696|consensus 99.3 8E-13 1.7E-17 120.4 0.0 86 3-97 109-194 (683)
8 KOG4236|consensus 99.2 1.2E-12 2.6E-17 122.1 0.2 58 2-59 265-322 (888)
9 smart00109 C1 Protein kinase C 99.2 9.9E-12 2.2E-16 80.6 1.9 49 5-54 1-49 (49)
10 cd00029 C1 Protein kinase C co 99.1 9E-11 2E-15 76.6 2.6 41 134-174 10-50 (50)
11 smart00109 C1 Protein kinase C 98.9 8.1E-10 1.8E-14 71.5 2.1 40 134-174 10-49 (49)
12 KOG0695|consensus 98.8 2E-09 4.3E-14 96.4 1.1 63 115-178 122-184 (593)
13 KOG0695|consensus 98.8 1.4E-09 3.1E-14 97.3 -0.0 57 2-58 128-184 (593)
14 KOG4239|consensus 98.7 1.5E-09 3.2E-14 95.1 -0.6 99 120-219 48-172 (348)
15 KOG1011|consensus 98.7 4.8E-10 1E-14 106.3 -6.3 57 121-178 170-226 (1283)
16 KOG1011|consensus 98.5 1.2E-08 2.6E-13 97.0 -1.3 56 3-58 171-226 (1283)
17 KOG0694|consensus 98.3 1.3E-07 2.8E-12 90.7 0.8 60 1-60 227-286 (694)
18 KOG4239|consensus 98.3 5.1E-08 1.1E-12 85.6 -2.3 56 3-58 50-105 (348)
19 KOG2996|consensus 98.0 1.4E-06 3E-11 82.3 1.1 54 2-56 521-574 (865)
20 KOG2996|consensus 97.2 0.0001 2.2E-09 70.0 0.6 57 118-176 518-574 (865)
21 KOG1169|consensus 97.1 0.0002 4.4E-09 68.9 1.7 56 2-57 96-154 (634)
22 KOG3564|consensus 97.1 6.6E-05 1.4E-09 69.7 -1.6 91 123-215 286-387 (604)
23 KOG0193|consensus 96.8 0.00062 1.4E-08 65.3 2.2 52 3-57 177-228 (678)
24 KOG3564|consensus 96.7 0.00039 8.5E-09 64.7 -0.1 55 2-57 284-338 (604)
25 KOG1453|consensus 96.6 0.00046 9.9E-09 70.1 -0.4 205 5-215 392-643 (918)
26 PF03107 C1_2: C1 domain; Int 96.3 0.0033 7.1E-08 36.7 2.3 29 17-47 2-30 (30)
27 PF03107 C1_2: C1 domain; Int 95.6 0.0079 1.7E-07 35.1 1.7 29 137-167 2-30 (30)
28 KOG0193|consensus 95.5 0.013 2.8E-07 56.6 3.5 40 134-176 188-227 (678)
29 PF07649 C1_3: C1-like domain; 95.4 0.0058 1.3E-07 35.6 0.6 29 17-47 2-30 (30)
30 KOG1169|consensus 95.1 0.014 3.1E-07 56.5 2.6 117 5-176 34-153 (634)
31 PF07649 C1_3: C1-like domain; 93.8 0.022 4.8E-07 33.0 0.4 29 137-167 2-30 (30)
32 KOG1170|consensus 92.8 0.055 1.2E-06 53.7 1.6 57 95-178 105-162 (1099)
33 KOG1453|consensus 86.1 0.2 4.4E-06 51.2 -0.3 43 14-59 555-597 (918)
34 PF08746 zf-RING-like: RING-li 83.4 0.32 7E-06 30.7 -0.2 29 18-50 1-31 (43)
35 PF00628 PHD: PHD-finger; Int 79.4 1.8 3.9E-05 27.6 2.3 32 17-50 1-32 (51)
36 PF14446 Prok-RING_1: Prokaryo 78.5 1.4 3.1E-05 29.3 1.6 36 15-51 5-40 (54)
37 KOG0612|consensus 76.1 0.39 8.4E-06 49.8 -2.4 54 2-56 1207-1260(1317)
38 cd02340 ZZ_NBR1_like Zinc fing 75.3 2.5 5.3E-05 26.6 2.0 30 17-49 2-32 (43)
39 PF13831 PHD_2: PHD-finger; PD 73.6 1 2.2E-05 27.3 -0.1 20 151-170 3-22 (36)
40 KOG3532|consensus 73.6 0.52 1.1E-05 46.3 -2.1 47 3-51 745-791 (1051)
41 PF08746 zf-RING-like: RING-li 70.5 1.9 4.2E-05 27.1 0.7 29 138-170 1-31 (43)
42 PF13901 DUF4206: Domain of un 67.1 5.2 0.00011 33.6 2.8 41 15-57 152-195 (202)
43 KOG3532|consensus 64.5 0.54 1.2E-05 46.2 -4.0 45 4-50 72-116 (1051)
44 PF00628 PHD: PHD-finger; Int 60.3 7.3 0.00016 24.7 1.9 30 138-169 2-31 (51)
45 PF14446 Prok-RING_1: Prokaryo 57.4 6.7 0.00014 26.1 1.4 34 136-170 6-39 (54)
46 smart00661 RPOL9 RNA polymeras 54.4 11 0.00024 24.0 2.0 26 17-42 2-30 (52)
47 PF07282 OrfB_Zn_ribbon: Putat 50.7 19 0.00042 24.3 2.9 34 11-44 24-58 (69)
48 smart00249 PHD PHD zinc finger 50.2 15 0.00034 21.9 2.2 32 17-50 1-32 (47)
49 PF06943 zf-LSD1: LSD1 zinc fi 44.7 21 0.00046 19.9 1.9 23 18-40 1-24 (25)
50 TIGR01053 LSD1 zinc finger dom 43.8 21 0.00045 20.9 1.8 25 17-41 3-28 (31)
51 COG1571 Predicted DNA-binding 43.5 18 0.00039 33.9 2.4 30 14-43 349-378 (421)
52 PRK00432 30S ribosomal protein 43.2 19 0.00041 23.4 1.8 27 15-42 20-47 (50)
53 cd02249 ZZ Zinc finger, ZZ typ 41.8 20 0.00042 22.5 1.7 29 17-48 2-31 (46)
54 PF07754 DUF1610: Domain of un 41.5 20 0.00043 19.8 1.4 23 138-160 1-24 (24)
55 PF02150 RNA_POL_M_15KD: RNA p 40.5 21 0.00045 21.3 1.6 26 16-42 2-30 (35)
56 TIGR01384 TFS_arch transcripti 40.2 23 0.0005 26.1 2.1 27 17-44 2-28 (104)
57 PF04770 ZF-HD_dimer: ZF-HD pr 39.7 19 0.00041 24.4 1.4 21 19-39 23-47 (60)
58 COG1571 Predicted DNA-binding 39.0 17 0.00036 34.2 1.4 37 135-171 350-386 (421)
59 cd02339 ZZ_Mind_bomb Zinc fing 38.9 24 0.00052 22.4 1.7 29 17-48 2-32 (45)
60 TIGR01566 ZF_HD_prot_N ZF-HD h 36.5 24 0.00053 23.1 1.5 21 19-39 19-43 (53)
61 PF11781 RRN7: RNA polymerase 35.1 22 0.00048 21.4 1.1 24 16-40 9-33 (36)
62 KOG3362|consensus 35.0 12 0.00025 30.0 -0.2 20 16-41 119-138 (156)
63 smart00659 RPOLCX RNA polymera 31.7 27 0.00057 22.1 1.1 25 138-162 5-29 (44)
64 PF13901 DUF4206: Domain of un 31.6 44 0.00095 28.0 2.7 41 136-178 153-196 (202)
65 PF03604 DNA_RNApol_7kD: DNA d 31.0 22 0.00047 20.9 0.5 24 138-161 3-26 (32)
66 KOG2807|consensus 30.1 56 0.0012 29.7 3.2 34 14-56 262-295 (378)
67 PHA00626 hypothetical protein 29.5 47 0.001 22.3 2.0 28 17-44 2-35 (59)
68 smart00291 ZnF_ZZ Zinc-binding 29.5 53 0.0012 20.3 2.2 21 15-38 4-24 (44)
69 PF14803 Nudix_N_2: Nudix N-te 29.1 45 0.00097 19.9 1.7 25 17-41 2-31 (34)
70 KOG4323|consensus 28.8 25 0.00054 33.4 0.8 35 17-51 170-204 (464)
71 PF13240 zinc_ribbon_2: zinc-r 28.2 34 0.00075 18.4 1.0 21 17-40 1-21 (23)
72 COG5151 SSL1 RNA polymerase II 27.6 59 0.0013 29.5 2.9 35 14-57 294-328 (421)
73 PF09297 zf-NADH-PPase: NADH p 27.2 56 0.0012 18.7 1.9 26 15-40 3-29 (32)
74 KOG3507|consensus 26.9 37 0.0008 23.0 1.2 26 137-162 22-47 (62)
75 PF07026 DUF1317: Protein of u 26.2 37 0.00081 22.9 1.1 16 212-227 11-27 (60)
76 PF13922 PHD_3: PHD domain of 25.8 21 0.00046 24.7 -0.1 16 153-168 44-59 (69)
77 PF00569 ZZ: Zinc finger, ZZ t 25.5 66 0.0014 20.2 2.1 23 14-39 3-26 (46)
78 PF13824 zf-Mss51: Zinc-finger 24.9 50 0.0011 22.0 1.5 25 17-43 1-25 (55)
79 PF12773 DZR: Double zinc ribb 24.0 47 0.001 20.9 1.2 28 15-42 12-39 (50)
80 cd02338 ZZ_PCMF_like Zinc fing 23.5 58 0.0012 20.8 1.6 20 17-39 2-22 (49)
81 KOG4718|consensus 23.4 20 0.00043 30.6 -0.8 29 16-48 182-210 (235)
82 PF15446 zf-PHD-like: PHD/FYVE 22.3 46 0.00099 27.4 1.1 28 18-48 2-33 (175)
83 smart00154 ZnF_AN1 AN1-like Zi 22.2 68 0.0015 19.5 1.6 22 18-42 1-22 (39)
84 PF02318 FYVE_2: FYVE-type zin 21.7 61 0.0013 24.6 1.7 35 135-169 54-88 (118)
85 KOG1090|consensus 21.4 37 0.00081 35.5 0.5 19 150-168 1559-1577(1732)
86 KOG0957|consensus 21.3 46 0.001 32.1 1.1 34 137-170 121-154 (707)
87 PF13909 zf-H2C2_5: C2H2-type 20.8 51 0.0011 17.2 0.8 10 33-42 1-10 (24)
No 1
>KOG4236|consensus
Probab=99.96 E-value=1.9e-30 Score=239.34 Aligned_cols=164 Identities=29% Similarity=0.434 Sum_probs=118.0
Q ss_pred CCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccchhhhhccCCcccccc----ccCCCC
Q psy13753 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQKSTSEIET----RVTPAV 78 (229)
Q Consensus 3 ~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~~~~~~~~s~~~~~~----~~~~~~ 78 (229)
.+|.+.+++|+.|||||+||++||||.+||++|..|+.+.||||+.+++++|.+.... ++|.-.+.. ++....
T Consensus 144 ~PH~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~kipNNCsG~r~r---r~sa~~l~~~~s~~l~~s~ 220 (888)
T KOG4236|consen 144 RPHTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFKIPNNCSGVRKR---RLSAVSLQPSRSNRLNLSP 220 (888)
T ss_pred ecceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhcCCCCCCccccc---CCCCCCCCCCCccccccCC
Confidence 4799999999999999999999999999999999999999999999999999764331 111111110 000000
Q ss_pred C-CcCCceeeEEeccccccceeec-ccccCCCCCCCCccccccc-------c-cccceeeecccCCCcccccCCCCCCCC
Q psy13753 79 P-DEEGRLTLFITGIKVRLPYVVT-FTRVPGSVSPGPTMRAAGK-------L-SSHELKTYSRQNSPRLVVTSPGGPGGH 148 (229)
Q Consensus 79 ~-~~~~~~~~~i~~~~v~~P~~~~-~~~~p~s~s~~p~~r~~~~-------~-~~h~~~~~~~~~~pt~C~~C~~~i~g~ 148 (229)
+ +.+ ......|.... ..+-|.+...+|++|+++- . .+|+|...+| ..||.|.+|..++.|+
T Consensus 221 ~~p~~--------p~~~~~pst~~~~~~~p~~~~~S~sgrpi~~ek~~~~rvkvPHTf~vHSY-~rpTVCq~CkkLLkGL 291 (888)
T KOG4236|consen 221 SSPLE--------PLLPARPSTELGGPREPSSAILSWSGRPIWMEKMLMSRVKVPHTFIVHSY-TRPTVCQYCKKLLKGL 291 (888)
T ss_pred CCCCC--------ccccCCCcccccCCCCCCcccccccCCCchhhhhhhhcccCCeeEEEeec-cCchHHHHHHHHHHHH
Confidence 0 000 01112222111 1233444555666776552 2 4899876555 4699999999999999
Q ss_pred ccCceEeeecccccchhccccCCCCCCcCh
Q psy13753 149 TRQGLKCRLCKTNVHVDCQEKVPAKCQPKS 178 (229)
Q Consensus 149 ~~qg~~C~~C~~~~H~~C~~~v~~~C~~~~ 178 (229)
++||++|++|++|||++|...|+++|.+..
T Consensus 292 ~rQGlqCkDCk~NcHkrCa~~v~~dClge~ 321 (888)
T KOG4236|consen 292 FRQGLQCKDCKFNCHKRCAMKVPNDCLGEV 321 (888)
T ss_pred HhcCcccccCCcchhhhhhhhcccccccce
Confidence 999999999999999999999999998764
No 2
>KOG0696|consensus
Probab=99.94 E-value=1.7e-28 Score=221.45 Aligned_cols=125 Identities=31% Similarity=0.554 Sum_probs=106.8
Q ss_pred CCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccchhhhhccCCccccccccCCCCCCcC
Q psy13753 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQKSTSEIETRVTPAVPDEE 82 (229)
Q Consensus 3 ~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 82 (229)
++|.|.+..|++||||.||.++|||+++||++|++|.|++|++|.+.|...|++...... .+
T Consensus 44 k~HkF~aRFFKqPTfCsHCkDFiwGfgKQGfQCqvC~fvvHkrChefVtF~CPGadkg~d------------------tD 105 (683)
T KOG0696|consen 44 KSHKFIARFFKQPTFCSHCKDFIWGFGKQGFQCQVCCFVVHKRCHEFVTFSCPGADKGPD------------------TD 105 (683)
T ss_pred ccceeeehhccCCchhhhhhhheeccccCceeeeEEeehhhhhhcceEEEECCCCCCCCC------------------CC
Confidence 579999999999999999999999999999999999999999999999999998654110 00
Q ss_pred CceeeEEeccccccceeecccccCCCCCCCCcccccccccccceeeecccCCCcccccCCCCCCCCccCceEeeeccccc
Q psy13753 83 GRLTLFITGIKVRLPYVVTFTRVPGSVSPGPTMRAAGKLSSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNV 162 (229)
Q Consensus 83 ~~~~~~i~~~~v~~P~~~~~~~~p~s~s~~p~~r~~~~~~~h~~~~~~~~~~pt~C~~C~~~i~g~~~qg~~C~~C~~~~ 162 (229)
-| .+.|.|..++| ..||+|||||+++.|++.||++|..|.+|+
T Consensus 106 -------------dp-----------------------r~kHkf~~~tY-ssPTFCDhCGsLLyGl~HQGmKC~~C~mNV 148 (683)
T KOG0696|consen 106 -------------DP-----------------------RSKHKFKIHTY-SSPTFCDHCGSLLYGLIHQGMKCDTCDMNV 148 (683)
T ss_pred -------------Cc-----------------------ccccceeeeec-CCCchhhhHHHHHHHHHhcccccccccchH
Confidence 01 01356665555 379999999999999999999999999999
Q ss_pred chhccccCCCCCCcChhhhh
Q psy13753 163 HVDCQEKVPAKCQPKSRLLR 182 (229)
Q Consensus 163 H~~C~~~v~~~C~~~~~~~~ 182 (229)
|++|+..||+.|+.+....+
T Consensus 149 H~rCv~nVPslCG~DhtE~R 168 (683)
T KOG0696|consen 149 HHRCVENVPSLCGTDHTERR 168 (683)
T ss_pred HHHHhhcCCcccCCcchhhc
Confidence 99999999999999865543
No 3
>KOG0694|consensus
Probab=99.82 E-value=1.9e-21 Score=184.03 Aligned_cols=134 Identities=25% Similarity=0.495 Sum_probs=106.9
Q ss_pred CCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccchhhhhccCCccccccccCCCCCCcC
Q psy13753 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQKSTSEIETRVTPAVPDEE 82 (229)
Q Consensus 3 ~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 82 (229)
.||.|..+++++|++|++|++|+|||.+|||+|++|...+||+|..++...|...... .. .+.
T Consensus 157 ~gH~F~aT~l~Qpt~Cs~C~kFi~gL~kqGyQCqvC~~vvHKkCh~kvv~~C~~~~~~--------n~--------e~q- 219 (694)
T KOG0694|consen 157 DGHKFGATSLRQPTFCSWCQKFIWGLRKQGYQCQVCWRVVHKKCHVKVVTLCDFLDNL--------NS--------EPQ- 219 (694)
T ss_pred eCcEEEEeeccCcchhhhhhhheeccCCCceEEeeeeehHhhhhHHHHHHhccCcCcc--------Cc--------CCc-
Confidence 4899999999999999999999999999999999999999999999999999765431 00 000
Q ss_pred CceeeEEeccccccceeecccccCCCCCCCCcccccccccccceeeecccCCCcccccCCCCCCCCccCceEeeeccccc
Q psy13753 83 GRLTLFITGIKVRLPYVVTFTRVPGSVSPGPTMRAAGKLSSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNV 162 (229)
Q Consensus 83 ~~~~~~i~~~~v~~P~~~~~~~~p~s~s~~p~~r~~~~~~~h~~~~~~~~~~pt~C~~C~~~i~g~~~qg~~C~~C~~~~ 162 (229)
+ . ....++++|| .|..+++ ..|+||+||++++|++.+||++|..|+++|
T Consensus 220 ~-~---~~~~~~~~Ph--------------------------rf~~~~~-q~ptFc~hCGs~L~r~~qqGlkCs~Cg~n~ 268 (694)
T KOG0694|consen 220 G-F---LFEFTFRNPH--------------------------RFVKLNR-QRPTFCDHCGSVLYRLRQQGLKCSTCGRNV 268 (694)
T ss_pred c-c---cccccccCCC--------------------------cchhhhc-cCccHHHhcchhhhhhcccCeeehhhhccc
Confidence 0 0 0013445553 3333333 359999999999999999999999999999
Q ss_pred chhccccCCCCCCcChhhhhcc
Q psy13753 163 HVDCQEKVPAKCQPKSRLLRRQ 184 (229)
Q Consensus 163 H~~C~~~v~~~C~~~~~~~~~~ 184 (229)
|.+|..++...|+.....+.+.
T Consensus 269 H~~c~~~va~~CG~s~t~~~~~ 290 (694)
T KOG0694|consen 269 HNRCVENLAPNCGGSRTFSPEI 290 (694)
T ss_pred cHHHHHhcccCCCCchhhhhhh
Confidence 9999999999999986555443
No 4
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=99.47 E-value=5.7e-14 Score=93.41 Aligned_cols=52 Identities=37% Similarity=0.799 Sum_probs=47.2
Q ss_pred ceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCcc
Q psy13753 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQP 56 (229)
Q Consensus 5 H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~ 56 (229)
|.|...+|..|++|++|+++|||+.+|||+|+.|++.+|++|...++..|..
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~~C~~ 52 (53)
T PF00130_consen 1 HHFVPTTFSKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVPPSCGC 52 (53)
T ss_dssp -EEEEEESSSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSSSBSST
T ss_pred CeEEEccCCCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcCCCCCC
Confidence 8999999999999999999999999999999999999999999999998863
No 5
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=99.32 E-value=1e-12 Score=85.89 Aligned_cols=50 Identities=40% Similarity=0.922 Sum_probs=47.8
Q ss_pred ceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCC
Q psy13753 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54 (229)
Q Consensus 5 H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C 54 (229)
|.|....+..|++|++|++.|||+.+|||+|++|++++|++|..+++.+|
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~~~C 50 (50)
T cd00029 1 HRFVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVPPSC 50 (50)
T ss_pred CccEEeeCCCCCChhhcchhhhccccceeEcCCCCCchhhhhhccCCCCC
Confidence 88999999999999999999999889999999999999999999999876
No 6
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=99.29 E-value=1.8e-12 Score=86.17 Aligned_cols=52 Identities=25% Similarity=0.430 Sum_probs=43.2
Q ss_pred cceeeecccCCCcccccCCCCCCCCccCceEeeecccccchhccccCCCCCCc
Q psy13753 124 HELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQP 176 (229)
Q Consensus 124 h~~~~~~~~~~pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~ 176 (229)
|.|...++ ..|++|++|+.+|||+.+||++|.+|++.+|++|.++++..|+.
T Consensus 1 H~f~~~~~-~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~~~~~C~~ 52 (53)
T PF00130_consen 1 HHFVPTTF-SKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLSKVPPSCGC 52 (53)
T ss_dssp -EEEEEES-SSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGCTSSSBSST
T ss_pred CeEEEccC-CCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhhhcCCCCCC
Confidence 45554443 46999999999999999999999999999999999999999875
No 7
>KOG0696|consensus
Probab=99.26 E-value=8e-13 Score=120.37 Aligned_cols=86 Identities=34% Similarity=0.566 Sum_probs=67.5
Q ss_pred CCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccchhhhhccCCccccccccCCCCCCcC
Q psy13753 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQKSTSEIETRVTPAVPDEE 82 (229)
Q Consensus 3 ~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 82 (229)
..|.|..++|..|||||+||.+|+|+..||++|+.|.+++|++|...||+-|.....+ ..+++.....-++
T Consensus 109 ~kHkf~~~tYssPTFCDhCGsLLyGl~HQGmKC~~C~mNVH~rCv~nVPslCG~DhtE---------~RGrl~l~~~~~~ 179 (683)
T KOG0696|consen 109 SKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCDMNVHHRCVENVPSLCGTDHTE---------RRGRLYLEAHIKR 179 (683)
T ss_pred cccceeeeecCCCchhhhHHHHHHHHHhcccccccccchHHHHHhhcCCcccCCcchh---------hcceEEEEEEecC
Confidence 4699999999999999999999999999999999999999999999999999887653 2233333333344
Q ss_pred CceeeEEeccccccc
Q psy13753 83 GRLTLFITGIKVRLP 97 (229)
Q Consensus 83 ~~~~~~i~~~~v~~P 97 (229)
..+++.|.+.+.=+|
T Consensus 180 ~~l~v~i~ea~NLiP 194 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIP 194 (683)
T ss_pred ceEEEEehhhccccc
Confidence 556666665443333
No 8
>KOG4236|consensus
Probab=99.24 E-value=1.2e-12 Score=122.08 Aligned_cols=58 Identities=38% Similarity=0.781 Sum_probs=54.9
Q ss_pred CCCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccchh
Q psy13753 2 DTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSR 59 (229)
Q Consensus 2 ~~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~~ 59 (229)
.-+|.|..++|.+||.|.+|..+|.||++||++|.+|+|+|||+|+.+|+++|.+...
T Consensus 265 kvPHTf~vHSY~rpTVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~v~~dClge~~ 322 (888)
T KOG4236|consen 265 KVPHTFIVHSYTRPTVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMKVPNDCLGEVT 322 (888)
T ss_pred cCCeeEEEeeccCchHHHHHHHHHHHHHhcCcccccCCcchhhhhhhhccccccccee
Confidence 4589999999999999999999999999999999999999999999999999987654
No 9
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=99.17 E-value=9.9e-12 Score=80.58 Aligned_cols=49 Identities=47% Similarity=0.973 Sum_probs=46.1
Q ss_pred ceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCC
Q psy13753 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKC 54 (229)
Q Consensus 5 H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C 54 (229)
|.|....+..|++|++|++.||++. |||+|.+|++.+|++|..+++.+|
T Consensus 1 H~~~~~~~~~~~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~~v~~~C 49 (49)
T smart00109 1 HHFVERTFKKPTKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAEKVPQPC 49 (49)
T ss_pred CceEEeccCCCCCccccccccCcCC-CCcCCCCCCchHHHHHHhhcCCCC
Confidence 7899999999999999999999876 899999999999999999998876
No 10
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=99.05 E-value=9e-11 Score=76.55 Aligned_cols=41 Identities=34% Similarity=0.737 Sum_probs=38.8
Q ss_pred CCcccccCCCCCCCCccCceEeeecccccchhccccCCCCC
Q psy13753 134 SPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKC 174 (229)
Q Consensus 134 ~pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C 174 (229)
.+++|++|.+.|||+..||++|.+|++.+|++|.++|+.+|
T Consensus 10 ~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~~v~~~C 50 (50)
T cd00029 10 KPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCADKVPPSC 50 (50)
T ss_pred CCCChhhcchhhhccccceeEcCCCCCchhhhhhccCCCCC
Confidence 48899999999999889999999999999999999999877
No 11
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=98.88 E-value=8.1e-10 Score=71.46 Aligned_cols=40 Identities=38% Similarity=0.735 Sum_probs=37.3
Q ss_pred CCcccccCCCCCCCCccCceEeeecccccchhccccCCCCC
Q psy13753 134 SPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKC 174 (229)
Q Consensus 134 ~pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C 174 (229)
.+++|++|.+.||++. ||++|.+|++.+|++|...|+.+|
T Consensus 10 ~~~~C~~C~~~i~~~~-~~~~C~~C~~~~H~~C~~~v~~~C 49 (49)
T smart00109 10 KPTKCCVCRKSIWGSF-QGLRCSWCKVKCHKKCAEKVPQPC 49 (49)
T ss_pred CCCCccccccccCcCC-CCcCCCCCCchHHHHHHhhcCCCC
Confidence 5889999999999976 899999999999999999999876
No 12
>KOG0695|consensus
Probab=98.76 E-value=2e-09 Score=96.41 Aligned_cols=63 Identities=25% Similarity=0.360 Sum_probs=54.0
Q ss_pred ccccccccccceeeecccCCCcccccCCCCCCCCccCceEeeecccccchhccccCCCCCCcCh
Q psy13753 115 MRAAGKLSSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKS 178 (229)
Q Consensus 115 ~r~~~~~~~h~~~~~~~~~~pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~~~ 178 (229)
+|++...++|.|+.-.+ +....|..|.+.|||+.+|||+|.+|++.+|++|..+|+..|+...
T Consensus 122 wrkly~~ngh~fqakr~-nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v~~~cg~~~ 184 (593)
T KOG0695|consen 122 WRKLYRANGHLFQAKRF-NRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLVPLTCGKHM 184 (593)
T ss_pred HHHHHhhcCcchhhhhh-ccceeeeechhhhhhcccccceeecceeehhhhhcccccchhhhhc
Confidence 45677789999974222 3468999999999999999999999999999999999999998754
No 13
>KOG0695|consensus
Probab=98.76 E-value=1.4e-09 Score=97.32 Aligned_cols=57 Identities=35% Similarity=0.698 Sum_probs=54.0
Q ss_pred CCCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccch
Q psy13753 2 DTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKS 58 (229)
Q Consensus 2 ~~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~ 58 (229)
.+||.|+++.|.+..+|..|.+.|||+++|||+|-+|+.-+||+|...|+..|....
T Consensus 128 ~ngh~fqakr~nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkch~~v~~~cg~~~ 184 (593)
T KOG0695|consen 128 ANGHLFQAKRFNRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCHGLVPLTCGKHM 184 (593)
T ss_pred hcCcchhhhhhccceeeeechhhhhhcccccceeecceeehhhhhcccccchhhhhc
Confidence 479999999999999999999999999999999999999999999999999997643
No 14
>KOG4239|consensus
Probab=98.73 E-value=1.5e-09 Score=95.08 Aligned_cols=99 Identities=25% Similarity=0.324 Sum_probs=71.8
Q ss_pred cccccceeeecccCCCcccccCCCCCCCCccCceEeeecccccchhccccCCCCCCcChhh-------------------
Q psy13753 120 KLSSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRL------------------- 180 (229)
Q Consensus 120 ~~~~h~~~~~~~~~~pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~~~~~------------------- 180 (229)
.+++|+|..-.. .-|+||+.|+.++||+.++|++|..|++.||.+|+.++-.+|.....+
T Consensus 48 ~~r~~~~~~~g~-~~~~~~~~c~~~~~~vl~egL~c~~c~~tch~rcr~lv~ldc~~p~~sS~~w~s~v~~~~~~~~p~e 126 (348)
T KOG4239|consen 48 PLRGHNFYTAGL-LLPTWCDKCGDFIWGVLREGLLCIHCKFTCHIRCRMLVDLDCRSPPSSSTSWDSIVERYVNVDTPVE 126 (348)
T ss_pred eccccccccccc-cccccchhhhHHHHHHHHHHHhhhhcCCccCHHHHhhhhhhhcCCCCCccCCCCccccccccCCCcc
Confidence 346677653222 358999999999999999999999999999999999999998654311
Q ss_pred -hhccCCchhhhhccCCCCCCCCC------CCceeeeEEEeeecce
Q psy13753 181 -LRRQKSTSEIETRVTPAAPDEEG------RPLFITGIIKVRLPYV 219 (229)
Q Consensus 181 -~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~g~~~v~~~~~ 219 (229)
..+....++|+++++.++.+... ....++|+|.|+|+++
T Consensus 127 ~t~p~~~~~ei~~ki~syn~~~s~~s~~L~edg~~tg~i~v~~~l~ 172 (348)
T KOG4239|consen 127 WTDPEPQEMEIEQKIHSYNSESSTLSMGLHEDGEYTGFIKVTLKLV 172 (348)
T ss_pred ccCCCchhhhhhcCcchhhchhcccccccCcccccCCceEEEeecc
Confidence 11122245677777777643333 2246999999999875
No 15
>KOG1011|consensus
Probab=98.66 E-value=4.8e-10 Score=106.33 Aligned_cols=57 Identities=30% Similarity=0.606 Sum_probs=51.7
Q ss_pred ccccceeeecccCCCcccccCCCCCCCCccCceEeeecccccchhccccCCCCCCcCh
Q psy13753 121 LSSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKS 178 (229)
Q Consensus 121 ~~~h~~~~~~~~~~pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~~~ 178 (229)
-.+|+|...++ ..||+|.-|.+++||+.+||++|..|+..||.+|++++..+|...+
T Consensus 170 ttphnf~~~t~-~tpt~cyecegllwglarqglrctqc~vk~hdkc~ell~adclqra 226 (1283)
T KOG1011|consen 170 TTPHNFATTTF-QTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELLSADCLQRA 226 (1283)
T ss_pred CCCCceeeeec-cCCchhhhhhhHHHHHhhcccchhhccccHHHHHHHHhhhHHHHHH
Confidence 36899987776 3699999999999999999999999999999999999999997653
No 16
>KOG1011|consensus
Probab=98.51 E-value=1.2e-08 Score=96.98 Aligned_cols=56 Identities=38% Similarity=0.775 Sum_probs=53.2
Q ss_pred CCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccch
Q psy13753 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKS 58 (229)
Q Consensus 3 ~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~ 58 (229)
.+|+|...+|..||||.-|.++|||+.+||++|..|++.||.+|.+.+..+|...+
T Consensus 171 tphnf~~~t~~tpt~cyecegllwglarqglrctqc~vk~hdkc~ell~adclqra 226 (1283)
T KOG1011|consen 171 TPHNFATTTFQTPTFCYECEGLLWGLARQGLRCTQCQVKVHDKCRELLSADCLQRA 226 (1283)
T ss_pred CCCceeeeeccCCchhhhhhhHHHHHhhcccchhhccccHHHHHHHHhhhHHHHHH
Confidence 58999999999999999999999999999999999999999999999999997544
No 17
>KOG0694|consensus
Probab=98.33 E-value=1.3e-07 Score=90.72 Aligned_cols=60 Identities=33% Similarity=0.673 Sum_probs=56.1
Q ss_pred CCCCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccchhh
Q psy13753 1 MDTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRL 60 (229)
Q Consensus 1 ~~~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~~~ 60 (229)
++++|.|..+.+..|+||++|+.++||..+||++|..|+.++|.+|..++..+|+.+...
T Consensus 227 ~~~Phrf~~~~~q~ptFc~hCGs~L~r~~qqGlkCs~Cg~n~H~~c~~~va~~CG~s~t~ 286 (694)
T KOG0694|consen 227 FRNPHRFVKLNRQRPTFCDHCGSVLYRLRQQGLKCSTCGRNVHNRCVENLAPNCGGSRTF 286 (694)
T ss_pred ccCCCcchhhhccCccHHHhcchhhhhhcccCeeehhhhccccHHHHHhcccCCCCchhh
Confidence 356799999999999999999999999999999999999999999999999999987654
No 18
>KOG4239|consensus
Probab=98.31 E-value=5.1e-08 Score=85.55 Aligned_cols=56 Identities=30% Similarity=0.590 Sum_probs=52.0
Q ss_pred CCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccch
Q psy13753 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKS 58 (229)
Q Consensus 3 ~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~ 58 (229)
++|.|.......|+||+-|++++||+.++||+|..|+|+||-+|...+..+|....
T Consensus 50 r~~~~~~~g~~~~~~~~~c~~~~~~vl~egL~c~~c~~tch~rcr~lv~ldc~~p~ 105 (348)
T KOG4239|consen 50 RGHNFYTAGLLLPTWCDKCGDFIWGVLREGLLCIHCKFTCHIRCRMLVDLDCRSPP 105 (348)
T ss_pred cccccccccccccccchhhhHHHHHHHHHHHhhhhcCCccCHHHHhhhhhhhcCCC
Confidence 68899988889999999999999999999999999999999999999999996543
No 19
>KOG2996|consensus
Probab=98.04 E-value=1.4e-06 Score=82.33 Aligned_cols=54 Identities=39% Similarity=0.866 Sum_probs=51.0
Q ss_pred CCCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCcc
Q psy13753 2 DTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQP 56 (229)
Q Consensus 2 ~~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~ 56 (229)
+++|.|+.++|..+|-|.+|..+|.|...|||+|..|+...|+.|..+++ +|..
T Consensus 521 an~H~fqmhtF~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~vp-~cgr 574 (865)
T KOG2996|consen 521 ANNHDFQMHTFKNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRVP-PCGR 574 (865)
T ss_pred ccCcceEEEeccCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccCCC-Cccc
Confidence 57899999999999999999999999999999999999999999999998 7753
No 20
>KOG2996|consensus
Probab=97.20 E-value=0.0001 Score=70.02 Aligned_cols=57 Identities=21% Similarity=0.425 Sum_probs=49.8
Q ss_pred cccccccceeeecccCCCcccccCCCCCCCCccCceEeeecccccchhccccCCCCCCc
Q psy13753 118 AGKLSSHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQP 176 (229)
Q Consensus 118 ~~~~~~h~~~~~~~~~~pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~ 176 (229)
..+.+.|.|.++++ ..+|.|..|..++.|...|||+|..|+...|+.|...|| +|+.
T Consensus 518 ya~an~H~fqmhtF-~~~tsCkvC~mllrGtfYQGY~C~~c~~~ahkecl~~vp-~cgr 574 (865)
T KOG2996|consen 518 YARANNHDFQMHTF-KNTTSCKVCQMLLRGTFYQGYKCEKCGADAHKECLGRVP-PCGR 574 (865)
T ss_pred cccccCcceEEEec-cCCcchHHHHHHhhhhhhcceeeeeccccHHHHhccCCC-Cccc
Confidence 34567899988887 568999999999999999999999999999999999987 5743
No 21
>KOG1169|consensus
Probab=97.11 E-value=0.0002 Score=68.94 Aligned_cols=56 Identities=30% Similarity=0.584 Sum_probs=46.8
Q ss_pred CCCceeEEEeeCCcccCccCcccc--ccc-ccCeeeeCCCCCcccccccccccCCCccc
Q psy13753 2 DTSHQFQEYTYKKITPCDICSQVL--RGH-TRQGLKCRLCKTNVHVDCQEKVPAKCQPK 57 (229)
Q Consensus 2 ~~~H~f~~~~~~~pt~C~~C~~~l--~Gl-~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~ 57 (229)
+..|.+.+..+..|++|..|.+.. -|+ ..||+.|..|++.+|.+|...+...|...
T Consensus 96 ~~~~~~~~~~~~~~~~c~~c~~~c~~~~~~~~~g~~C~~C~~~vh~~C~~~~~~~~~~~ 154 (634)
T KOG1169|consen 96 DGDHVWRPKHLWKPAYCFVCPKSCGSCGVGIKQGLCCDWCGRTVHERCVRRADPECQCK 154 (634)
T ss_pred cCceeccCCCCCCCceEEeccccccchhhcccCceeeccccchHHHHHHhhcCcccccc
Confidence 356888888999999999999987 333 48999999999999999999988776543
No 22
>KOG3564|consensus
Probab=97.10 E-value=6.6e-05 Score=69.72 Aligned_cols=91 Identities=22% Similarity=0.345 Sum_probs=62.2
Q ss_pred ccceeeecccCCCcccccCCCCCCCCccCceEeeecccccchhccccCCCCCCcCh---hh--hhc---cCC---chhhh
Q psy13753 123 SHELKTYSRQNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKS---RL--LRR---QKS---TSEIE 191 (229)
Q Consensus 123 ~h~~~~~~~~~~pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~~~---~~--~~~---~~~---~~~~~ 191 (229)
.|.|..-++ ..+-.|++|+..|. +..-+++|++|-..||..|.++++.+|-+.. +. ... .+- ..-|.
T Consensus 286 ~htfi~kt~-~~~~~Cv~C~krIk-fg~~sLkCRdC~v~~H~~Cr~~l~lpCIP~l~g~~~k~geg~L~DF~~s~aPMIP 363 (604)
T KOG3564|consen 286 LHTFISKTV-IKPENCVPCGKRIK-FGKLSLKCRDCPVVCHIECRDKLTLPCIPTLIGPPVKTGEGMLADFAPSTAPMIP 363 (604)
T ss_pred cchhhHhhc-cCcccchhhhhhhh-hhhcccccccCCeeechhHHhcCCCCCcCccCCCCCccCceehhhhcccccccch
Confidence 455543222 46889999999886 4567899999999999999999999998731 11 000 000 11133
Q ss_pred hccCCCCCCCCCCCceeeeEEEee
Q psy13753 192 TRVTPAAPDEEGRPLFITGIIKVR 215 (229)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~g~~~v~ 215 (229)
..+-..+-+.|..++.++|+|||.
T Consensus 364 alVVHCVneIEaRGLteeGLYRvs 387 (604)
T KOG3564|consen 364 ALVVHCVNEIEARGLTEEGLYRVS 387 (604)
T ss_pred HHHHHHHHHHHHccccccceeecc
Confidence 333344557788899999999985
No 23
>KOG0193|consensus
Probab=96.81 E-value=0.00062 Score=65.30 Aligned_cols=52 Identities=29% Similarity=0.711 Sum_probs=44.4
Q ss_pred CCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccc
Q psy13753 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPK 57 (229)
Q Consensus 3 ~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~ 57 (229)
..|.|.-++|-...||+.|+.-+| -+|++|+.|+|.+|.+|..+|+..|...
T Consensus 177 ~~H~~~rktf~~~~fC~~~~~~~l---~~gfrC~~C~~KfHq~Cs~~vp~~C~~~ 228 (678)
T KOG0193|consen 177 TTHNFVRKTFFPLAFCDSCCNKFL---FTGFRCQTCGYKFHQSCSPRVPTSCVNP 228 (678)
T ss_pred cceeeeeccccchhhhhhhcchhh---hcccccCCCCCccccccCCCCCCCCCCc
Confidence 468899999999999996655333 4899999999999999999999999843
No 24
>KOG3564|consensus
Probab=96.70 E-value=0.00039 Score=64.74 Aligned_cols=55 Identities=29% Similarity=0.620 Sum_probs=50.3
Q ss_pred CCCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccc
Q psy13753 2 DTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPK 57 (229)
Q Consensus 2 ~~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~ 57 (229)
+..|.|....|.++-.|..|+..|. +..-+++|.+|-..||..|..+++.+|.+.
T Consensus 284 mr~htfi~kt~~~~~~Cv~C~krIk-fg~~sLkCRdC~v~~H~~Cr~~l~lpCIP~ 338 (604)
T KOG3564|consen 284 MRLHTFISKTVIKPENCVPCGKRIK-FGKLSLKCRDCPVVCHIECRDKLTLPCIPT 338 (604)
T ss_pred cccchhhHhhccCcccchhhhhhhh-hhhcccccccCCeeechhHHhcCCCCCcCc
Confidence 4579999999999999999999994 567799999999999999999999999874
No 25
>KOG1453|consensus
Probab=96.60 E-value=0.00046 Score=70.14 Aligned_cols=205 Identities=22% Similarity=0.287 Sum_probs=107.6
Q ss_pred ceeEEE-eeCCc-ccCccCccccccc-ccCeeeeCCCC----CcccccccccccCCCccchhhhhccCCccccccccCCC
Q psy13753 5 HQFQEY-TYKKI-TPCDICSQVLRGH-TRQGLKCRLCK----TNVHVDCQEKVPAKCQPKSRLLRRQKSTSEIETRVTPA 77 (229)
Q Consensus 5 H~f~~~-~~~~p-t~C~~C~~~l~Gl-~~qgl~C~~C~----~~~Hk~C~~~v~~~C~~~~~~~~~~~s~~~~~~~~~~~ 77 (229)
|.+... .+..| .||..|..++||. .-++.+|..|+ .+.|..|...+...|......+...... .+...+...
T Consensus 392 ~~~r~~~~~~~~~s~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr~~~~~~~-~~~~~~~~~ 470 (918)
T KOG1453|consen 392 HMFRAGNTVRGPRSWCESCATFLPGQRILQSVKEPLCGRVSLENSNSACSDLVPNVFKQLLKRLKRNLVK-ILGTDLTTL 470 (918)
T ss_pred HHhhcccccCcchhcccchhhhchhhhhhhcccccccccccccccccchhcccchhhHHHHHHhhhhhhh-ccccCcccc
Confidence 334443 44456 9999999999998 88889999999 7999999999999997765543321100 000000000
Q ss_pred ------CC-------C---------cCCceeeEE-eccccccceee----cccccCCCCCCCCccccccccccc--ceee
Q psy13753 78 ------VP-------D---------EEGRLTLFI-TGIKVRLPYVV----TFTRVPGSVSPGPTMRAAGKLSSH--ELKT 128 (229)
Q Consensus 78 ------~~-------~---------~~~~~~~~i-~~~~v~~P~~~----~~~~~p~s~s~~p~~r~~~~~~~h--~~~~ 128 (229)
.. . ..+....+. .+++..+-... ..+....+.++... ....+..| .+..
T Consensus 471 ~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~--~~~~~~~~sg~~~~ 548 (918)
T KOG1453|consen 471 SVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVH--KSKEVNLHSGALKH 548 (918)
T ss_pred ccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCcc--ccccchhccCcchh
Confidence 00 0 000000000 00000000000 00000000000000 00001111 1222
Q ss_pred ecc-cCCCcccccCCCCCCCCccCceEeeecccccchhccccCCCCCCcChhhhhccCCchhhhh----------ccCCC
Q psy13753 129 YSR-QNSPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQKSTSEIET----------RVTPA 197 (229)
Q Consensus 129 ~~~-~~~pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~~~~~~~~~~~~~~~~~----------~~~~~ 197 (229)
+.+ ...|+.|..|..++|. ++..|..|.+.||++|...+...|+.........|+.+.... .+...
T Consensus 549 ~~r~~~~P~~c~~c~~~~~~---~~~~c~~c~~~chkkc~~~~~~~~~~~~l~~~~~fG~~l~~~~~~e~~~vP~i~~~c 625 (918)
T KOG1453|consen 549 YLRSLRKPAPCRTCETYSWF---MELECELCRLVCHKKCLEALKSLCGHERLPGRPLFGVSLSELARYEPSTVPFILKKC 625 (918)
T ss_pred hhhcccCCcccccccccchh---hhcccceeeeeccccchhhccccCccccccccccccHHHHHhhccCCCCCCHHHHHH
Confidence 222 1248999999999996 459999999999999999999999875332112344333222 12222
Q ss_pred CCCCCCCCceeeeEEEee
Q psy13753 198 APDEEGRPLFITGIIKVR 215 (229)
Q Consensus 198 ~~~~~~~~~~~~g~~~v~ 215 (229)
....+.....++||||+.
T Consensus 626 ~~~ie~~~lr~eGiYRks 643 (918)
T KOG1453|consen 626 LREIEAHLLRVEGIYRKS 643 (918)
T ss_pred HHHHHHhhhhccceeecc
Confidence 334445668899999986
No 26
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=96.34 E-value=0.0033 Score=36.70 Aligned_cols=29 Identities=31% Similarity=0.754 Sum_probs=25.7
Q ss_pred cCccCcccccccccCeeeeCCCCCccccccc
Q psy13753 17 PCDICSQVLRGHTRQGLKCRLCKTNVHVDCQ 47 (229)
Q Consensus 17 ~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~ 47 (229)
+|+.|++.+-|.. +|.|..|.+.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~--~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY--FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE--eEEeCCCCCeEcCccC
Confidence 6999999887744 9999999999999985
No 27
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=95.61 E-value=0.0079 Score=35.07 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=25.6
Q ss_pred ccccCCCCCCCCccCceEeeecccccchhcc
Q psy13753 137 LVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQ 167 (229)
Q Consensus 137 ~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~ 167 (229)
+|+.|+..+-|.. +|.|..|.+.+|.+|+
T Consensus 2 ~C~~C~~~~~~~~--~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 2 WCDVCRRKIDGFY--FYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCcCCCE--eEEeCCCCCeEcCccC
Confidence 5899998888755 9999999999999985
No 28
>KOG0193|consensus
Probab=95.45 E-value=0.013 Score=56.55 Aligned_cols=40 Identities=20% Similarity=0.516 Sum_probs=33.6
Q ss_pred CCcccccCCCCCCCCccCceEeeecccccchhccccCCCCCCc
Q psy13753 134 SPRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAKCQP 176 (229)
Q Consensus 134 ~pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~C~~ 176 (229)
...+|+.|+. ++..+|++|..|++.+|..|...||..|+.
T Consensus 188 ~~~fC~~~~~---~~l~~gfrC~~C~~KfHq~Cs~~vp~~C~~ 227 (678)
T KOG0193|consen 188 PLAFCDSCCN---KFLFTGFRCQTCGYKFHQSCSPRVPTSCVN 227 (678)
T ss_pred chhhhhhhcc---hhhhcccccCCCCCccccccCCCCCCCCCC
Confidence 3578986554 444689999999999999999999999984
No 29
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=95.39 E-value=0.0058 Score=35.56 Aligned_cols=29 Identities=28% Similarity=0.797 Sum_probs=13.2
Q ss_pred cCccCcccccccccCeeeeCCCCCccccccc
Q psy13753 17 PCDICSQVLRGHTRQGLKCRLCKTNVHVDCQ 47 (229)
Q Consensus 17 ~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~ 47 (229)
.|+.|+..+.+ ...|.|..|+|..|..|+
T Consensus 2 ~C~~C~~~~~~--~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG--GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S----EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC--CceEECccCCCccChhcC
Confidence 58999998865 468999999999999884
No 30
>KOG1169|consensus
Probab=95.09 E-value=0.014 Score=56.49 Aligned_cols=117 Identities=23% Similarity=0.436 Sum_probs=68.7
Q ss_pred ceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccchhhhhccCCccccccccCCCCCCcCCc
Q psy13753 5 HQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSRLLRRQKSTSEIETRVTPAVPDEEGR 84 (229)
Q Consensus 5 H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 84 (229)
|.+.+-......+|.+| +|-..-....|+.|+...|..|......+|........... + ..+++.
T Consensus 34 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~~~~~~~-------~-----~k~~~~ 98 (634)
T KOG1169|consen 34 HSSEPDCIIRQMVCCVC---LWSEMAPSVDCDVDGGVSHEECVSGAASDCPLLVLLGFENQ-------R-----HKTDGD 98 (634)
T ss_pred cccCCchhHhhhhhhhh---hhcccccccceeccccchhhhhhcccccchHHHHHHHhhhh-------h-----hhccCc
Confidence 33333333333456555 55555678999999999999999999888876443111000 0 000000
Q ss_pred eeeEEeccccccceeecccccCCCCCCCCcccccccccccceeeecccCCCcccccCCCCC--CC-CccCceEeeecccc
Q psy13753 85 LTLFITGIKVRLPYVVTFTRVPGSVSPGPTMRAAGKLSSHELKTYSRQNSPRLVVTSPGGP--GG-HTRQGLKCRLCKTN 161 (229)
Q Consensus 85 ~~~~i~~~~v~~P~~~~~~~~p~s~s~~p~~r~~~~~~~h~~~~~~~~~~pt~C~~C~~~i--~g-~~~qg~~C~~C~~~ 161 (229)
. .+.+. | + .+|++|..|.+.. -| ...||+.|.+|++.
T Consensus 99 --------~---------~~~~~----------------~-~------~~~~~c~~c~~~c~~~~~~~~~g~~C~~C~~~ 138 (634)
T KOG1169|consen 99 --------H---------VWRPK----------------H-L------WKPAYCFVCPKSCGSCGVGIKQGLCCDWCGRT 138 (634)
T ss_pred --------e---------eccCC----------------C-C------CCCceEEeccccccchhhcccCceeeccccch
Confidence 0 01111 0 0 1344555554442 22 25799999999999
Q ss_pred cchhccccCCCCCCc
Q psy13753 162 VHVDCQEKVPAKCQP 176 (229)
Q Consensus 162 ~H~~C~~~v~~~C~~ 176 (229)
+|..|...+...|..
T Consensus 139 vh~~C~~~~~~~~~~ 153 (634)
T KOG1169|consen 139 VHERCVRRADPECQC 153 (634)
T ss_pred HHHHHHhhcCccccc
Confidence 999999998887543
No 31
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=93.77 E-value=0.022 Score=33.03 Aligned_cols=29 Identities=17% Similarity=0.342 Sum_probs=12.9
Q ss_pred ccccCCCCCCCCccCceEeeecccccchhcc
Q psy13753 137 LVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQ 167 (229)
Q Consensus 137 ~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~ 167 (229)
.|+.|+.-+.+ ...|.|..|++..|.+|+
T Consensus 2 ~C~~C~~~~~~--~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 2 RCDACGKPIDG--GWFYRCSECDFDLHEECA 30 (30)
T ss_dssp --TTTS----S----EEE-TTT-----HHHH
T ss_pred cCCcCCCcCCC--CceEECccCCCccChhcC
Confidence 47888877665 468999999999999985
No 32
>KOG1170|consensus
Probab=92.75 E-value=0.055 Score=53.68 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=45.7
Q ss_pred ccceeecccccCCCCCCCCcccccccccccceeeecccCCCcccc-cCCCCCCCCccCceEeeecccccchhccccCCCC
Q psy13753 95 RLPYVVTFTRVPGSVSPGPTMRAAGKLSSHELKTYSRQNSPRLVV-TSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVPAK 173 (229)
Q Consensus 95 ~~P~~~~~~~~p~s~s~~p~~r~~~~~~~h~~~~~~~~~~pt~C~-~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~~~ 173 (229)
+|||+|.++++|++. .-+.|+ .|++.+. .|.++|-||+-.+|..|...+...
T Consensus 105 ~mphqw~Egnlpvss------------------------kc~vc~k~cgs~~r---lqd~rclwc~~~vh~~c~~~~~~~ 157 (1099)
T KOG1170|consen 105 IMPHQWMEGNLPVSS------------------------KCSVCEKPCGSVLR---LQDYRCLWCGCCVHDTCIGNLARA 157 (1099)
T ss_pred cCchhhhhcCCCccc------------------------cccccccccccccc---cCCcceEeeccEeehhhhhhHHhh
Confidence 899999999999762 123343 3777755 799999999999999999999988
Q ss_pred CCcCh
Q psy13753 174 CQPKS 178 (229)
Q Consensus 174 C~~~~ 178 (229)
|..+.
T Consensus 158 cs~~~ 162 (1099)
T KOG1170|consen 158 CSLGH 162 (1099)
T ss_pred ccccc
Confidence 87764
No 33
>KOG1453|consensus
Probab=86.14 E-value=0.2 Score=51.24 Aligned_cols=43 Identities=28% Similarity=0.600 Sum_probs=37.8
Q ss_pred CcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccchh
Q psy13753 14 KITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPKSR 59 (229)
Q Consensus 14 ~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~~~ 59 (229)
.|+.|..|...+|. +++.|..|...||++|...+...|.....
T Consensus 555 ~P~~c~~c~~~~~~---~~~~c~~c~~~chkkc~~~~~~~~~~~~l 597 (918)
T KOG1453|consen 555 KPAPCRTCETYSWF---MELECELCRLVCHKKCLEALKSLCGHERL 597 (918)
T ss_pred CCcccccccccchh---hhcccceeeeeccccchhhccccCccccc
Confidence 49999999999996 44999999999999999999999975543
No 34
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=83.45 E-value=0.32 Score=30.69 Aligned_cols=29 Identities=34% Similarity=0.959 Sum_probs=16.7
Q ss_pred CccCcccccccccCeeeeC--CCCCcccccccccc
Q psy13753 18 CDICSQVLRGHTRQGLKCR--LCKTNVHVDCQEKV 50 (229)
Q Consensus 18 C~~C~~~l~Gl~~qgl~C~--~C~~~~Hk~C~~~v 50 (229)
|..|.+++- ||.+|. +|+...|..|...-
T Consensus 1 C~~C~~iv~----~G~~C~~~~C~~r~H~~C~~~y 31 (43)
T PF08746_consen 1 CEACKEIVT----QGQRCSNRDCNVRLHDDCFKKY 31 (43)
T ss_dssp -TTT-SB-S----SSEE-SS--S--EE-HHHHHHH
T ss_pred CcccchhHe----eeccCCCCccCchHHHHHHHHH
Confidence 677888654 899999 69999999997644
No 35
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=79.40 E-value=1.8 Score=27.61 Aligned_cols=32 Identities=22% Similarity=0.593 Sum_probs=25.2
Q ss_pred cCccCcccccccccCeeeeCCCCCcccccccccc
Q psy13753 17 PCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKV 50 (229)
Q Consensus 17 ~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v 50 (229)
+|.+|+. .+-...-++|..|+..+|..|....
T Consensus 1 ~C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~~ 32 (51)
T PF00628_consen 1 YCPVCGQ--SDDDGDMIQCDSCNRWYHQECVGPP 32 (51)
T ss_dssp EBTTTTS--SCTTSSEEEBSTTSCEEETTTSTSS
T ss_pred eCcCCCC--cCCCCCeEEcCCCChhhCcccCCCC
Confidence 4778888 3345677999999999999888754
No 36
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=78.51 E-value=1.4 Score=29.28 Aligned_cols=36 Identities=25% Similarity=0.554 Sum_probs=29.7
Q ss_pred cccCccCcccccccccCeeeeCCCCCccccccccccc
Q psy13753 15 ITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVP 51 (229)
Q Consensus 15 pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~ 51 (229)
-..|..|++-+. ..-..+.|..|+...|+.|.....
T Consensus 5 ~~~C~~Cg~~~~-~~dDiVvCp~CgapyHR~C~~~~g 40 (54)
T PF14446_consen 5 GCKCPVCGKKFK-DGDDIVVCPECGAPYHRDCWEKAG 40 (54)
T ss_pred CccChhhCCccc-CCCCEEECCCCCCcccHHHHhhCC
Confidence 467999999774 245889999999999999987764
No 37
>KOG0612|consensus
Probab=76.05 E-value=0.39 Score=49.79 Aligned_cols=54 Identities=28% Similarity=0.600 Sum_probs=49.7
Q ss_pred CCCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccccCCCcc
Q psy13753 2 DTSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQP 56 (229)
Q Consensus 2 ~~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~ 56 (229)
..+|.|.+..|..|++|+.|-..+|+.++ .|.|..|.+.+|+.=..++..+|..
T Consensus 1207 ~~~~~~~~~l~~~~~~~~~~~k~l~~~~~-~ye~~~~~~~~~~d~~~k~m~p~ky 1260 (1317)
T KOG0612|consen 1207 HKGHEFIPFLYHFPTNCEACIKPLWHMFK-AYECRRCHIKCHKDHMDKIMAPCKY 1260 (1317)
T ss_pred CCCCcchHHHhhcchhHHHHhhhcccchh-HHHHHHhhccccccccccccCcccc
Confidence 57899999999999999999999999887 9999999999999999988888873
No 38
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=75.26 E-value=2.5 Score=26.61 Aligned_cols=30 Identities=30% Similarity=0.722 Sum_probs=23.9
Q ss_pred cCccCcccccccccCeeeeCCC-CCccccccccc
Q psy13753 17 PCDICSQVLRGHTRQGLKCRLC-KTNVHVDCQEK 49 (229)
Q Consensus 17 ~C~~C~~~l~Gl~~qgl~C~~C-~~~~Hk~C~~~ 49 (229)
.|+.|+..|.| .-|+|..| +|.....|...
T Consensus 2 ~Cd~C~~~i~G---~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVG---VRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcC---CeEECCCCCCccchHHhhCc
Confidence 69999997777 46899999 67777777654
No 39
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=73.61 E-value=1 Score=27.28 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=13.3
Q ss_pred CceEeeecccccchhccccC
Q psy13753 151 QGLKCRLCKTNVHVDCQEKV 170 (229)
Q Consensus 151 qg~~C~~C~~~~H~~C~~~v 170 (229)
+-++|..|++.+|..|-...
T Consensus 3 ~ll~C~~C~v~VH~~CYGv~ 22 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCYGVS 22 (36)
T ss_dssp EEEE-SSS--EEEHHHHT-S
T ss_pred ceEEeCCCCCcCChhhCCcc
Confidence 45789999999999996543
No 40
>KOG3532|consensus
Probab=73.58 E-value=0.52 Score=46.35 Aligned_cols=47 Identities=2% Similarity=-0.096 Sum_probs=41.8
Q ss_pred CCceeEEEeeCCcccCccCcccccccccCeeeeCCCCCccccccccccc
Q psy13753 3 TSHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVP 51 (229)
Q Consensus 3 ~~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~ 51 (229)
.||.|+...|.+.+-|+.|+.-||. +-+.+|+.|.+-||++|.....
T Consensus 745 ~~~d~~~~h~~r~~~~~~~~~ki~~--~~a~~~~~~~~~~~~k~~~~~~ 791 (1051)
T KOG3532|consen 745 DGGDDEEAHLDRKRSASTRKAKIQA--TFAAGKKKVLDLMPQKRKNTDA 791 (1051)
T ss_pred CCCchHHhhhhhhcccchhccceee--hhhhcccHHHHhcchhhhcchh
Confidence 5799999999999999999999994 6788999999999999987654
No 41
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=70.46 E-value=1.9 Score=27.09 Aligned_cols=29 Identities=28% Similarity=0.542 Sum_probs=16.2
Q ss_pred cccCCCCCCCCccCceEee--ecccccchhccccC
Q psy13753 138 VVTSPGGPGGHTRQGLKCR--LCKTNVHVDCQEKV 170 (229)
Q Consensus 138 C~~C~~~i~g~~~qg~~C~--~C~~~~H~~C~~~v 170 (229)
|..|. .++.||.+|. +|+...|..|....
T Consensus 1 C~~C~----~iv~~G~~C~~~~C~~r~H~~C~~~y 31 (43)
T PF08746_consen 1 CEACK----EIVTQGQRCSNRDCNVRLHDDCFKKY 31 (43)
T ss_dssp -TTT-----SB-SSSEE-SS--S--EE-HHHHHHH
T ss_pred Ccccc----hhHeeeccCCCCccCchHHHHHHHHH
Confidence 45564 4566999999 79999999996643
No 42
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=67.09 E-value=5.2 Score=33.62 Aligned_cols=41 Identities=24% Similarity=0.583 Sum_probs=31.9
Q ss_pred cccCccCc--cccccccc-CeeeeCCCCCcccccccccccCCCccc
Q psy13753 15 ITPCDICS--QVLRGHTR-QGLKCRLCKTNVHVDCQEKVPAKCQPK 57 (229)
Q Consensus 15 pt~C~~C~--~~l~Gl~~-qgl~C~~C~~~~Hk~C~~~v~~~C~~~ 57 (229)
.-.|+.|. +.|+-+-. ...+|..|+-..|+.|... ..|+.=
T Consensus 152 GfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--~~CpkC 195 (202)
T PF13901_consen 152 GFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--KSCPKC 195 (202)
T ss_pred CCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--CCCCCc
Confidence 45789998 47765544 6689999999999999996 567653
No 43
>KOG3532|consensus
Probab=64.45 E-value=0.54 Score=46.24 Aligned_cols=45 Identities=11% Similarity=-0.027 Sum_probs=26.3
Q ss_pred CceeEEEeeCCcccCccCcccccccccCeeeeCCCCCcccccccccc
Q psy13753 4 SHQFQEYTYKKITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKV 50 (229)
Q Consensus 4 ~H~f~~~~~~~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v 50 (229)
.|.|+...+..+|||+.|..-.| .+.+-+|..|.|++|+.|.++-
T Consensus 72 ~~r~~~t~~~~~t~~~~~~~~~~--~~~AS~c~s~~~V~h~lfqE~k 116 (1051)
T KOG3532|consen 72 QFRPAQIPEELRTFLKSGEDGQG--ISKASSCNSISLVLHMLFQEHK 116 (1051)
T ss_pred hcChhcCcccccccccccccchh--hHHHHHHHHHHHHHHHHHHHhh
Confidence 45556666666666666666555 3445556666666666665544
No 44
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=60.30 E-value=7.3 Score=24.68 Aligned_cols=30 Identities=13% Similarity=0.330 Sum_probs=23.4
Q ss_pred cccCCCCCCCCccCceEeeecccccchhcccc
Q psy13753 138 VVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEK 169 (229)
Q Consensus 138 C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~ 169 (229)
|..|+. .+-...-+.|..|+...|..|...
T Consensus 2 C~vC~~--~~~~~~~i~C~~C~~~~H~~C~~~ 31 (51)
T PF00628_consen 2 CPVCGQ--SDDDGDMIQCDSCNRWYHQECVGP 31 (51)
T ss_dssp BTTTTS--SCTTSSEEEBSTTSCEEETTTSTS
T ss_pred CcCCCC--cCCCCCeEEcCCCChhhCcccCCC
Confidence 666776 333567789999999999999764
No 45
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=57.38 E-value=6.7 Score=26.08 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=27.1
Q ss_pred cccccCCCCCCCCccCceEeeecccccchhccccC
Q psy13753 136 RLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKV 170 (229)
Q Consensus 136 t~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v 170 (229)
..|..|+.-+.- .-+.+.|..|+..-|+.|-+..
T Consensus 6 ~~C~~Cg~~~~~-~dDiVvCp~CgapyHR~C~~~~ 39 (54)
T PF14446_consen 6 CKCPVCGKKFKD-GDDIVVCPECGAPYHRDCWEKA 39 (54)
T ss_pred ccChhhCCcccC-CCCEEECCCCCCcccHHHHhhC
Confidence 468999987631 2478999999999999998654
No 46
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=54.38 E-value=11 Score=23.99 Aligned_cols=26 Identities=23% Similarity=0.561 Sum_probs=18.5
Q ss_pred cCccCccccccc-cc--CeeeeCCCCCcc
Q psy13753 17 PCDICSQVLRGH-TR--QGLKCRLCKTNV 42 (229)
Q Consensus 17 ~C~~C~~~l~Gl-~~--qgl~C~~C~~~~ 42 (229)
||..|+++|.-- .. .-+.|..|++..
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~ 30 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEE 30 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeE
Confidence 899999988532 11 257899998653
No 47
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=50.71 E-value=19 Score=24.31 Aligned_cols=34 Identities=12% Similarity=0.298 Sum_probs=26.8
Q ss_pred eeCCcccCccCcccccc-cccCeeeeCCCCCcccc
Q psy13753 11 TYKKITPCDICSQVLRG-HTRQGLKCRLCKTNVHV 44 (229)
Q Consensus 11 ~~~~pt~C~~C~~~l~G-l~~qgl~C~~C~~~~Hk 44 (229)
.......|..|+...-. +....+.|..|++..|.
T Consensus 24 ~~~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 24 EAYTSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDR 58 (69)
T ss_pred CCCCccCccCcccccccccccceEEcCCCCCEECc
Confidence 34467889999998865 56778999999988764
No 48
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF06943 zf-LSD1: LSD1 zinc finger; InterPro: IPR005735 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC []. This domain may play a role in the regulation of transcription, via either repression of a prodeath pathway or activation of an antideath pathway, in response to signals emanating from cells undergoing pathogen-induced hypersensitive cell death. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].
Probab=44.75 E-value=21 Score=19.87 Aligned_cols=23 Identities=26% Similarity=0.701 Sum_probs=16.5
Q ss_pred CccCcccc-cccccCeeeeCCCCC
Q psy13753 18 CDICSQVL-RGHTRQGLKCRLCKT 40 (229)
Q Consensus 18 C~~C~~~l-~Gl~~qgl~C~~C~~ 40 (229)
|..|+.+| +-.+....+|..|..
T Consensus 1 C~~Cr~~L~yp~GA~sVrCa~C~~ 24 (25)
T PF06943_consen 1 CGGCRTLLMYPRGAPSVRCACCHT 24 (25)
T ss_pred CCCCCceEEcCCCCCCeECCccCc
Confidence 66788766 334567789998875
No 50
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=43.81 E-value=21 Score=20.88 Aligned_cols=25 Identities=28% Similarity=0.652 Sum_probs=19.4
Q ss_pred cCccCcccccc-cccCeeeeCCCCCc
Q psy13753 17 PCDICSQVLRG-HTRQGLKCRLCKTN 41 (229)
Q Consensus 17 ~C~~C~~~l~G-l~~qgl~C~~C~~~ 41 (229)
.|..|+.+|+. .....++|..|...
T Consensus 3 ~C~~C~t~L~yP~gA~~vrCs~C~~v 28 (31)
T TIGR01053 3 VCGGCRTLLMYPRGASSVRCALCQTV 28 (31)
T ss_pred CcCCCCcEeecCCCCCeEECCCCCeE
Confidence 68999998863 35677999999754
No 51
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=43.48 E-value=18 Score=33.94 Aligned_cols=30 Identities=23% Similarity=0.643 Sum_probs=24.3
Q ss_pred CcccCccCcccccccccCeeeeCCCCCccc
Q psy13753 14 KITPCDICSQVLRGHTRQGLKCRLCKTNVH 43 (229)
Q Consensus 14 ~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~H 43 (229)
....|..||..+-..++.||+|..|++..-
T Consensus 349 ~~p~Cp~Cg~~m~S~G~~g~rC~kCg~~~~ 378 (421)
T COG1571 349 VNPVCPRCGGRMKSAGRNGFRCKKCGTRAR 378 (421)
T ss_pred cCCCCCccCCchhhcCCCCcccccccccCC
Confidence 345999999999777777999998887654
No 52
>PRK00432 30S ribosomal protein S27ae; Validated
Probab=43.21 E-value=19 Score=23.39 Aligned_cols=27 Identities=15% Similarity=0.365 Sum_probs=21.0
Q ss_pred cccCccCcc-cccccccCeeeeCCCCCcc
Q psy13753 15 ITPCDICSQ-VLRGHTRQGLKCRLCKTNV 42 (229)
Q Consensus 15 pt~C~~C~~-~l~Gl~~qgl~C~~C~~~~ 42 (229)
..+|..|+. ++. .-...+.|..|++..
T Consensus 20 ~~fCP~Cg~~~m~-~~~~r~~C~~Cgyt~ 47 (50)
T PRK00432 20 NKFCPRCGSGFMA-EHLDRWHCGKCGYTE 47 (50)
T ss_pred cCcCcCCCcchhe-ccCCcEECCCcCCEE
Confidence 459999999 775 344568999999875
No 53
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=41.76 E-value=20 Score=22.55 Aligned_cols=29 Identities=24% Similarity=0.693 Sum_probs=21.3
Q ss_pred cCccCcccccccccCeeeeCCCC-Ccccccccc
Q psy13753 17 PCDICSQVLRGHTRQGLKCRLCK-TNVHVDCQE 48 (229)
Q Consensus 17 ~C~~C~~~l~Gl~~qgl~C~~C~-~~~Hk~C~~ 48 (229)
.|+.|+..|+| .-|+|..|. |..-..|..
T Consensus 2 ~C~~C~~~i~g---~r~~C~~C~d~dLC~~Cf~ 31 (46)
T cd02249 2 SCDGCLKPIVG---VRYHCLVCEDFDLCSSCYA 31 (46)
T ss_pred CCcCCCCCCcC---CEEECCCCCCCcCHHHHHC
Confidence 59999998887 568999887 555445544
No 54
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=41.53 E-value=20 Score=19.80 Aligned_cols=23 Identities=9% Similarity=0.114 Sum_probs=12.9
Q ss_pred cccCCCCCCCCc-cCceEeeeccc
Q psy13753 138 VVTSPGGPGGHT-RQGLKCRLCKT 160 (229)
Q Consensus 138 C~~C~~~i~g~~-~qg~~C~~C~~ 160 (229)
|..|+..|-+.. --.|.|.+|++
T Consensus 1 C~sC~~~i~~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 1 CTSCGRPIAPREQAVPFPCPNCGF 24 (24)
T ss_pred CccCCCcccCcccCceEeCCCCCC
Confidence 345555554432 34577888764
No 55
>PF02150 RNA_POL_M_15KD: RNA polymerases M/15 Kd subunit; InterPro: IPR001529 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. In archaebacteria, there is generally a single form of RNA polymerase which also consist of an oligomeric assemblage of 10 to 13 polypeptides. It has recently been shown [], [] that small subunits of about 15 kDa, found in polymerase types I and II, are highly conserved. These proteins contain a probable zinc finger in their N-terminal region and a C-terminal zinc ribbon domain (see IPR001222 from INTERPRO).; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_I 3M4O_I 3S14_I 2E2J_I 4A3J_I 3HOZ_I 1TWA_I 3S1Q_I 3S1N_I 1TWG_I ....
Probab=40.54 E-value=21 Score=21.33 Aligned_cols=26 Identities=23% Similarity=0.546 Sum_probs=15.9
Q ss_pred ccCccCcccccc---cccCeeeeCCCCCcc
Q psy13753 16 TPCDICSQVLRG---HTRQGLKCRLCKTNV 42 (229)
Q Consensus 16 t~C~~C~~~l~G---l~~qgl~C~~C~~~~ 42 (229)
.||..|+++|.- ..... .|..|+|..
T Consensus 2 ~FCp~C~nlL~p~~~~~~~~-~C~~C~Y~~ 30 (35)
T PF02150_consen 2 RFCPECGNLLYPKEDKEKRV-ACRTCGYEE 30 (35)
T ss_dssp -BETTTTSBEEEEEETTTTE-EESSSS-EE
T ss_pred eeCCCCCccceEcCCCccCc-CCCCCCCcc
Confidence 489999999852 11111 688888753
No 56
>TIGR01384 TFS_arch transcription factor S, archaeal. There has been an apparent duplication event in the Halobacteriaceae lineage (Haloarcula, Haloferax, Haloquadratum, Halobacterium and Natromonas). There appears to be a separate duplication in Methanosphaera stadtmanae.
Probab=40.23 E-value=23 Score=26.11 Aligned_cols=27 Identities=15% Similarity=0.367 Sum_probs=20.9
Q ss_pred cCccCcccccccccCeeeeCCCCCcccc
Q psy13753 17 PCDICSQVLRGHTRQGLKCRLCKTNVHV 44 (229)
Q Consensus 17 ~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk 44 (229)
||..|+.+|. .....+.|..|++....
T Consensus 2 fC~~Cg~~l~-~~~~~~~C~~C~~~~~~ 28 (104)
T TIGR01384 2 FCPKCGSLMT-PKNGVYVCPSCGYEKEK 28 (104)
T ss_pred CCcccCcccc-cCCCeEECcCCCCcccc
Confidence 8999999995 23456999999987543
No 57
>PF04770 ZF-HD_dimer: ZF-HD protein dimerisation region; InterPro: IPR006456 The homeodomain (HD) is a 60-amino acid DNA-binding domain found in many transcription factors. HD-containing proteins are found in diverse organisms such as humans, Drosophila, nematode worms, and plants, where they play important roles in development. Zinc-finger-homeodomain (ZF- HD) subfamily proteins have only been identified in plants, and likely play plant specific roles. ZF-HD proteins are expressed predominantly or exclusively in floral tissue, indicating a likely regulatory role during floral development []. The ZF-HD class of homeodomain proteins may also be involved in the photosynthesis-related mesophyll-specific gene expression of phosphoenolpyruvate carboxylase in C4 species [] and in pathogen signaling and plant defense mechanisms []. These proteins share three domains of high sequence similarity: the homeodomain (II) located at the carboxy-terminus, and two other segments (Ia and Ib) located in the amino-terminal part. These N-terminal domains contain five conserved cysteine residues and at least three conserved histidine residues whose spacing ressembles zinc-binding domains involved in dimerization of transcription factors. Although the two domains contain at least eight potential zinc-binding amino-acids, the unique spacing of the conserved cysteine and histidine residues within domain Ib suggests that both domains form one rather than two zinc finger structures. The two conserved motifs Ia and Ib constitute a dimerization domain which is sufficient for the formation of homo- and heterodimers []. This entry represents the N-terminal Cysteine/Histidine-rich dimerization domain. The companion ZF-HD homeobox domain is described in IPR006455 from INTERPRO.
Probab=39.67 E-value=19 Score=24.41 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=16.3
Q ss_pred ccCcccccccc----cCeeeeCCCC
Q psy13753 19 DICSQVLRGHT----RQGLKCRLCK 39 (229)
Q Consensus 19 ~~C~~~l~Gl~----~qgl~C~~C~ 39 (229)
|-|++|+.... ...|+|..|+
T Consensus 23 DGCgEFm~~~g~eg~~~al~CaACg 47 (60)
T PF04770_consen 23 DGCGEFMPSPGEEGTPEALKCAACG 47 (60)
T ss_pred ccccccccCCCCCCCcccceecccC
Confidence 77999997633 4689999886
No 58
>COG1571 Predicted DNA-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=39.00 E-value=17 Score=34.15 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=27.7
Q ss_pred CcccccCCCCCCCCccCceEeeecccccchhccccCC
Q psy13753 135 PRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKVP 171 (229)
Q Consensus 135 pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v~ 171 (229)
...|-.|+..+....+.||+|+.|++..-..=...|+
T Consensus 350 ~p~Cp~Cg~~m~S~G~~g~rC~kCg~~~~~~~~~~v~ 386 (421)
T COG1571 350 NPVCPRCGGRMKSAGRNGFRCKKCGTRARETLIKEVP 386 (421)
T ss_pred CCCCCccCCchhhcCCCCcccccccccCCcccccccc
Confidence 3579999999987767799999999876654333444
No 59
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=38.92 E-value=24 Score=22.37 Aligned_cols=29 Identities=31% Similarity=0.709 Sum_probs=21.5
Q ss_pred cCccCc-ccccccccCeeeeCCC-CCcccccccc
Q psy13753 17 PCDICS-QVLRGHTRQGLKCRLC-KTNVHVDCQE 48 (229)
Q Consensus 17 ~C~~C~-~~l~Gl~~qgl~C~~C-~~~~Hk~C~~ 48 (229)
.|+.|+ ..|.| --|+|..| +|-....|..
T Consensus 2 ~Cd~C~~~~i~G---~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIG---IRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCccc---CeEECCCCCCccchHHHhC
Confidence 699999 46666 45889988 5777767765
No 60
>TIGR01566 ZF_HD_prot_N ZF-HD homeobox protein Cys/His-rich dimerization domain. This model describes a 54-residue domain found in the N-terminal region of plant proteins, the vast majority of which contain a ZF-HD class homeobox domain toward the C-terminus. The region between the two domains typically is rich in low complexity sequence. The companion ZF-HD homeobox domain is described in model TIGR01565.
Probab=36.47 E-value=24 Score=23.13 Aligned_cols=21 Identities=29% Similarity=0.737 Sum_probs=15.3
Q ss_pred ccCccccc--c--cccCeeeeCCCC
Q psy13753 19 DICSQVLR--G--HTRQGLKCRLCK 39 (229)
Q Consensus 19 ~~C~~~l~--G--l~~qgl~C~~C~ 39 (229)
|-|++|+. | -....|+|..|+
T Consensus 19 DGCgEFmps~g~~~~~~al~CaACg 43 (53)
T TIGR01566 19 DGCGEFMPSSGEEGDPESLTCAACG 43 (53)
T ss_pred ccccccccCCCCCCCCcceeeeecC
Confidence 67999997 2 123479999876
No 61
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=35.10 E-value=22 Score=21.43 Aligned_cols=24 Identities=25% Similarity=0.670 Sum_probs=17.7
Q ss_pred ccCccCcccccccccCe-eeeCCCCC
Q psy13753 16 TPCDICSQVLRGHTRQG-LKCRLCKT 40 (229)
Q Consensus 16 t~C~~C~~~l~Gl~~qg-l~C~~C~~ 40 (229)
..|..|+.. |.....| +-|..|+-
T Consensus 9 ~~C~~C~~~-~~~~~dG~~yC~~cG~ 33 (36)
T PF11781_consen 9 EPCPVCGSR-WFYSDDGFYYCDRCGH 33 (36)
T ss_pred CcCCCCCCe-EeEccCCEEEhhhCce
Confidence 359999999 6666677 56877763
No 62
>KOG3362|consensus
Probab=35.00 E-value=12 Score=30.02 Aligned_cols=20 Identities=25% Similarity=0.697 Sum_probs=15.9
Q ss_pred ccCccCcccccccccCeeeeCCCCCc
Q psy13753 16 TPCDICSQVLRGHTRQGLKCRLCKTN 41 (229)
Q Consensus 16 t~C~~C~~~l~Gl~~qgl~C~~C~~~ 41 (229)
+||.+|| +|+ -|.|..|+..
T Consensus 119 ~fCaVCG--~~S----~ysC~~CG~k 138 (156)
T KOG3362|consen 119 KFCAVCG--YDS----KYSCVNCGTK 138 (156)
T ss_pred hhhhhcC--CCc----hhHHHhcCCc
Confidence 8999998 665 4789988854
No 63
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=31.67 E-value=27 Score=22.06 Aligned_cols=25 Identities=12% Similarity=0.259 Sum_probs=15.0
Q ss_pred cccCCCCCCCCccCceEeeeccccc
Q psy13753 138 VVTSPGGPGGHTRQGLKCRLCKTNV 162 (229)
Q Consensus 138 C~~C~~~i~g~~~qg~~C~~C~~~~ 162 (229)
|..|+.-..--...+.+|..|+..+
T Consensus 5 C~~Cg~~~~~~~~~~irC~~CG~rI 29 (44)
T smart00659 5 CGECGRENEIKSKDVVRCRECGYRI 29 (44)
T ss_pred CCCCCCEeecCCCCceECCCCCceE
Confidence 5566654322235678888887654
No 64
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=31.61 E-value=44 Score=28.00 Aligned_cols=41 Identities=17% Similarity=0.264 Sum_probs=30.0
Q ss_pred cccccCCC--CCCCCcc-CceEeeecccccchhccccCCCCCCcCh
Q psy13753 136 RLVVTSPG--GPGGHTR-QGLKCRLCKTNVHVDCQEKVPAKCQPKS 178 (229)
Q Consensus 136 t~C~~C~~--~i~g~~~-qg~~C~~C~~~~H~~C~~~v~~~C~~~~ 178 (229)
-.|+.|.+ .|.-+.. .-.+|..|+...|+.|... ..|+.-.
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--~~CpkC~ 196 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--KSCPKCA 196 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--CCCCCcH
Confidence 36888875 4544433 5689999999999999886 5687643
No 65
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=31.01 E-value=22 Score=20.95 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=12.4
Q ss_pred cccCCCCCCCCccCceEeeecccc
Q psy13753 138 VVTSPGGPGGHTRQGLKCRLCKTN 161 (229)
Q Consensus 138 C~~C~~~i~g~~~qg~~C~~C~~~ 161 (229)
|..|+....--.....+|..|+..
T Consensus 3 C~~Cg~~~~~~~~~~irC~~CG~R 26 (32)
T PF03604_consen 3 CGECGAEVELKPGDPIRCPECGHR 26 (32)
T ss_dssp ESSSSSSE-BSTSSTSSBSSSS-S
T ss_pred CCcCCCeeEcCCCCcEECCcCCCe
Confidence 445555433223456778777754
No 66
>KOG2807|consensus
Probab=30.12 E-value=56 Score=29.75 Aligned_cols=34 Identities=32% Similarity=0.799 Sum_probs=22.5
Q ss_pred CcccCccCcccccccccCeeeeCCCCCcccccccccccCCCcc
Q psy13753 14 KITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQP 56 (229)
Q Consensus 14 ~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~ 56 (229)
.|+||. |..-+ ...||.|..|+..+ |. +|..|+.
T Consensus 262 ~ps~C~-CH~~~---~~~Gy~CP~Ckakv---Cs--LP~eCpi 295 (378)
T KOG2807|consen 262 TPSFCA-CHSEL---SGGGYFCPQCKAKV---CS--LPIECPI 295 (378)
T ss_pred Ccchhe-ecccc---ccCceeCCcccCee---ec--CCccCCc
Confidence 578887 66533 34799999998655 44 3555654
No 67
>PHA00626 hypothetical protein
Probab=29.48 E-value=47 Score=22.28 Aligned_cols=28 Identities=18% Similarity=0.324 Sum_probs=18.1
Q ss_pred cCccCccc-cc--cc---ccCeeeeCCCCCcccc
Q psy13753 17 PCDICSQV-LR--GH---TRQGLKCRLCKTNVHV 44 (229)
Q Consensus 17 ~C~~C~~~-l~--Gl---~~qgl~C~~C~~~~Hk 44 (229)
.|..|+.- |. |. ..|-|+|.+|+|..-+
T Consensus 2 ~CP~CGS~~Ivrcg~cr~~snrYkCkdCGY~ft~ 35 (59)
T PHA00626 2 SCPKCGSGNIAKEKTMRGWSDDYVCCDCGYNDSK 35 (59)
T ss_pred CCCCCCCceeeeeceecccCcceEcCCCCCeech
Confidence 46667762 21 21 2578999999988753
No 68
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=29.47 E-value=53 Score=20.35 Aligned_cols=21 Identities=29% Similarity=0.825 Sum_probs=16.5
Q ss_pred cccCccCcccccccccCeeeeCCC
Q psy13753 15 ITPCDICSQVLRGHTRQGLKCRLC 38 (229)
Q Consensus 15 pt~C~~C~~~l~Gl~~qgl~C~~C 38 (229)
...|+.|+..|+| .-|+|..|
T Consensus 4 ~~~C~~C~~~i~g---~ry~C~~C 24 (44)
T smart00291 4 SYSCDTCGKPIVG---VRYHCLVC 24 (44)
T ss_pred CcCCCCCCCCCcC---CEEECCCC
Confidence 4679999997776 46789887
No 69
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=29.06 E-value=45 Score=19.88 Aligned_cols=25 Identities=32% Similarity=0.642 Sum_probs=13.3
Q ss_pred cCccCccccc-----ccccCeeeeCCCCCc
Q psy13753 17 PCDICSQVLR-----GHTRQGLKCRLCKTN 41 (229)
Q Consensus 17 ~C~~C~~~l~-----Gl~~qgl~C~~C~~~ 41 (229)
||..|+..|- |=.+.-+.|..|+++
T Consensus 2 fC~~CG~~l~~~ip~gd~r~R~vC~~Cg~I 31 (34)
T PF14803_consen 2 FCPQCGGPLERRIPEGDDRERLVCPACGFI 31 (34)
T ss_dssp B-TTT--B-EEE--TT-SS-EEEETTTTEE
T ss_pred ccccccChhhhhcCCCCCccceECCCCCCE
Confidence 7899998762 223455789988864
No 70
>KOG4323|consensus
Probab=28.81 E-value=25 Score=33.40 Aligned_cols=35 Identities=23% Similarity=0.551 Sum_probs=30.4
Q ss_pred cCccCcccccccccCeeeeCCCCCccccccccccc
Q psy13753 17 PCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVP 51 (229)
Q Consensus 17 ~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~ 51 (229)
-|.+|.....|.+.+-++|..|+--+|..|..-..
T Consensus 170 qc~vC~~g~~~~~NrmlqC~~C~~~fHq~Chqp~i 204 (464)
T KOG4323|consen 170 QCSVCYCGGPGAGNRMLQCDKCRQWYHQACHQPLI 204 (464)
T ss_pred eeeeeecCCcCccceeeeecccccHHHHHhccCCC
Confidence 39999988888888999999999999999977553
No 71
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=28.15 E-value=34 Score=18.40 Aligned_cols=21 Identities=24% Similarity=0.542 Sum_probs=13.5
Q ss_pred cCccCcccccccccCeeeeCCCCC
Q psy13753 17 PCDICSQVLRGHTRQGLKCRLCKT 40 (229)
Q Consensus 17 ~C~~C~~~l~Gl~~qgl~C~~C~~ 40 (229)
+|..|+.-|- ..+-.|..|+.
T Consensus 1 ~Cp~CG~~~~---~~~~fC~~CG~ 21 (23)
T PF13240_consen 1 YCPNCGAEIE---DDAKFCPNCGT 21 (23)
T ss_pred CCcccCCCCC---CcCcchhhhCC
Confidence 5777877653 34556777764
No 72
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=27.62 E-value=59 Score=29.48 Aligned_cols=35 Identities=31% Similarity=0.777 Sum_probs=23.0
Q ss_pred CcccCccCcccccccccCeeeeCCCCCcccccccccccCCCccc
Q psy13753 14 KITPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQEKVPAKCQPK 57 (229)
Q Consensus 14 ~pt~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~~v~~~C~~~ 57 (229)
.|++|. |...+- .-||.|..|+-.+ |.. |..|+.-
T Consensus 294 ~Ps~Ca-CHs~~~---~gGy~CP~CktkV---CsL--Pi~CP~C 328 (421)
T COG5151 294 LPSVCA-CHSEVK---GGGYECPVCKTKV---CSL--PISCPIC 328 (421)
T ss_pred Ccccee-eeeeec---cCceeCCccccee---ecC--CccCcch
Confidence 488887 665443 3699999998655 544 4455543
No 73
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=27.25 E-value=56 Score=18.73 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=13.7
Q ss_pred cccCccCccccc-ccccCeeeeCCCCC
Q psy13753 15 ITPCDICSQVLR-GHTRQGLKCRLCKT 40 (229)
Q Consensus 15 pt~C~~C~~~l~-Gl~~qgl~C~~C~~ 40 (229)
..||..||.-.- --..-+.+|..|+.
T Consensus 3 ~rfC~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRFCGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB-TTT--BEEE-SSSS-EEESSSS-
T ss_pred CcccCcCCccccCCCCcCEeECCCCcC
Confidence 458999998662 12235678988874
No 74
>KOG3507|consensus
Probab=26.90 E-value=37 Score=22.97 Aligned_cols=26 Identities=12% Similarity=0.227 Sum_probs=18.2
Q ss_pred ccccCCCCCCCCccCceEeeeccccc
Q psy13753 137 LVVTSPGGPGGHTRQGLKCRLCKTNV 162 (229)
Q Consensus 137 ~C~~C~~~i~g~~~qg~~C~~C~~~~ 162 (229)
.|.-|+.-...-.....+|++||+-+
T Consensus 22 iCgdC~~en~lk~~D~irCReCG~RI 47 (62)
T KOG3507|consen 22 ICGDCGQENTLKRGDVIRCRECGYRI 47 (62)
T ss_pred EeccccccccccCCCcEehhhcchHH
Confidence 37777765433346679999999765
No 75
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.23 E-value=37 Score=22.89 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=12.5
Q ss_pred EEeeecc-eEEEEeeec
Q psy13753 212 IKVRLPY-VVTFTRLMT 227 (229)
Q Consensus 212 ~~v~~~~-~~~~~~~~~ 227 (229)
=++.+|| ..+.||+|-
T Consensus 11 G~itl~ys~~~~GWl~P 27 (60)
T PF07026_consen 11 GTITLPYSHFKNGWLMP 27 (60)
T ss_pred eEEEEEEEeccceeecC
Confidence 3578887 788999973
No 76
>PF13922 PHD_3: PHD domain of transcriptional enhancer, Asx
Probab=25.77 E-value=21 Score=24.66 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=13.7
Q ss_pred eEeeecccccchhccc
Q psy13753 153 LKCRLCKTNVHVDCQE 168 (229)
Q Consensus 153 ~~C~~C~~~~H~~C~~ 168 (229)
.-|..|+..||.+|..
T Consensus 44 i~Cq~CGAFCHDDCIg 59 (69)
T PF13922_consen 44 IMCQGCGAFCHDDCIG 59 (69)
T ss_pred HHHhhccchhcccccc
Confidence 4689999999999964
No 77
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=25.46 E-value=66 Score=20.16 Aligned_cols=23 Identities=26% Similarity=0.626 Sum_probs=15.5
Q ss_pred CcccCccCcc-cccccccCeeeeCCCC
Q psy13753 14 KITPCDICSQ-VLRGHTRQGLKCRLCK 39 (229)
Q Consensus 14 ~pt~C~~C~~-~l~Gl~~qgl~C~~C~ 39 (229)
....|+.|+. .|.| .-|+|..|.
T Consensus 3 ~~~~C~~C~~~~i~g---~Ry~C~~C~ 26 (46)
T PF00569_consen 3 HGYTCDGCGTDPIIG---VRYHCLVCP 26 (46)
T ss_dssp SSCE-SSS-SSSEES---SEEEESSSS
T ss_pred CCeECcCCCCCcCcC---CeEECCCCC
Confidence 3567999998 6666 568998874
No 78
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51
Probab=24.85 E-value=50 Score=22.02 Aligned_cols=25 Identities=24% Similarity=0.663 Sum_probs=18.0
Q ss_pred cCccCcccccccccCeeeeCCCCCccc
Q psy13753 17 PCDICSQVLRGHTRQGLKCRLCKTNVH 43 (229)
Q Consensus 17 ~C~~C~~~l~Gl~~qgl~C~~C~~~~H 43 (229)
+|.+|..-+. ..+.|.|.+|++..|
T Consensus 1 ~Cpv~~~~~~--~~v~~~Cp~cGipth 25 (55)
T PF13824_consen 1 LCPVCKKDLP--AHVNFECPDCGIPTH 25 (55)
T ss_pred CCCCCccccc--cccCCcCCCCCCcCc
Confidence 4677776554 357789999987776
No 79
>PF12773 DZR: Double zinc ribbon
Probab=23.98 E-value=47 Score=20.86 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=18.1
Q ss_pred cccCccCcccccccccCeeeeCCCCCcc
Q psy13753 15 ITPCDICSQVLRGHTRQGLKCRLCKTNV 42 (229)
Q Consensus 15 pt~C~~C~~~l~Gl~~qgl~C~~C~~~~ 42 (229)
..||.+|+..|-......+.|..|+...
T Consensus 12 ~~fC~~CG~~l~~~~~~~~~C~~Cg~~~ 39 (50)
T PF12773_consen 12 AKFCPHCGTPLPPPDQSKKICPNCGAEN 39 (50)
T ss_pred ccCChhhcCChhhccCCCCCCcCCcCCC
Confidence 4688888887752233456787777654
No 80
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=23.52 E-value=58 Score=20.82 Aligned_cols=20 Identities=35% Similarity=0.926 Sum_probs=15.3
Q ss_pred cCccCc-ccccccccCeeeeCCCC
Q psy13753 17 PCDICS-QVLRGHTRQGLKCRLCK 39 (229)
Q Consensus 17 ~C~~C~-~~l~Gl~~qgl~C~~C~ 39 (229)
.|+.|+ .-|+| .-|+|..|.
T Consensus 2 ~C~~C~~~~i~g---~R~~C~~C~ 22 (49)
T cd02338 2 SCDGCGKSNFTG---RRYKCLICY 22 (49)
T ss_pred CCCCCcCCCcEE---eeEEeCCCC
Confidence 589999 66776 568898773
No 81
>KOG4718|consensus
Probab=23.40 E-value=20 Score=30.57 Aligned_cols=29 Identities=28% Similarity=0.870 Sum_probs=23.3
Q ss_pred ccCccCcccccccccCeeeeCCCCCcccccccc
Q psy13753 16 TPCDICSQVLRGHTRQGLKCRLCKTNVHVDCQE 48 (229)
Q Consensus 16 t~C~~C~~~l~Gl~~qgl~C~~C~~~~Hk~C~~ 48 (229)
.-|..|..++- ||.+|..|+...|..|..
T Consensus 182 k~Cn~Ch~LvI----qg~rCg~c~i~~h~~c~q 210 (235)
T KOG4718|consen 182 KNCNLCHCLVI----QGIRCGSCNIQYHRGCIQ 210 (235)
T ss_pred HHHhHhHHHhh----eeeccCcccchhhhHHHH
Confidence 45999988653 678999999999987765
No 82
>PF15446 zf-PHD-like: PHD/FYVE-zinc-finger like domain
Probab=22.35 E-value=46 Score=27.40 Aligned_cols=28 Identities=29% Similarity=0.712 Sum_probs=20.6
Q ss_pred CccCcc----cccccccCeeeeCCCCCcccccccc
Q psy13753 18 CDICSQ----VLRGHTRQGLKCRLCKTNVHVDCQE 48 (229)
Q Consensus 18 C~~C~~----~l~Gl~~qgl~C~~C~~~~Hk~C~~ 48 (229)
|+.|+. .-.| +-..|+.|....|+.|..
T Consensus 2 C~~C~~~g~~~~kG---~Lv~CQGCs~sYHk~CLG 33 (175)
T PF15446_consen 2 CDTCGYEGDDRNKG---PLVYCQGCSSSYHKACLG 33 (175)
T ss_pred cccccCCCCCccCC---CeEEcCccChHHHhhhcC
Confidence 777842 2334 457899999999999965
No 83
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=22.17 E-value=68 Score=19.54 Aligned_cols=22 Identities=41% Similarity=1.016 Sum_probs=14.5
Q ss_pred CccCcccccccccCeeeeCCCCCcc
Q psy13753 18 CDICSQVLRGHTRQGLKCRLCKTNV 42 (229)
Q Consensus 18 C~~C~~~l~Gl~~qgl~C~~C~~~~ 42 (229)
|..|+... +|. +++|..|+.+.
T Consensus 1 C~~C~~~~-~l~--~f~C~~C~~~F 22 (39)
T smart00154 1 CHFCRKKV-GLT--GFKCRHCGNLF 22 (39)
T ss_pred CcccCCcc-ccc--CeECCccCCcc
Confidence 56677644 443 78899888553
No 84
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.75 E-value=61 Score=24.60 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=25.3
Q ss_pred CcccccCCCCCCCCccCceEeeecccccchhcccc
Q psy13753 135 PRLVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEK 169 (229)
Q Consensus 135 pt~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~ 169 (229)
.+.|..|+.-+.-+...|..|.+|+..+=.+|...
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~ 88 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY 88 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc
Confidence 45799998754444567999999999888888665
No 85
>KOG1090|consensus
Probab=21.40 E-value=37 Score=35.55 Aligned_cols=19 Identities=26% Similarity=0.803 Sum_probs=17.8
Q ss_pred cCceEeeecccccchhccc
Q psy13753 150 RQGLKCRLCKTNVHVDCQE 168 (229)
Q Consensus 150 ~qg~~C~~C~~~~H~~C~~ 168 (229)
-++++|+.|+..+|++|..
T Consensus 1559 pv~~~c~~c~~~~he~c~~ 1577 (1732)
T KOG1090|consen 1559 PVSVHCKKCRIHVHEGCVN 1577 (1732)
T ss_pred cceecccccccccchhhcc
Confidence 6899999999999999987
No 86
>KOG0957|consensus
Probab=21.28 E-value=46 Score=32.07 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=23.6
Q ss_pred ccccCCCCCCCCccCceEeeecccccchhccccC
Q psy13753 137 LVVTSPGGPGGHTRQGLKCRLCKTNVHVDCQEKV 170 (229)
Q Consensus 137 ~C~~C~~~i~g~~~qg~~C~~C~~~~H~~C~~~v 170 (229)
.|..|-+-----+...++|..||++||..|....
T Consensus 121 iCcVClg~rs~da~ei~qCd~CGi~VHEgCYGv~ 154 (707)
T KOG0957|consen 121 ICCVCLGQRSVDAGEILQCDKCGINVHEGCYGVL 154 (707)
T ss_pred EEEEeecCccccccceeeccccCceecccccccc
Confidence 5777743221114567899999999999997654
No 87
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=20.78 E-value=51 Score=17.23 Aligned_cols=10 Identities=30% Similarity=0.750 Sum_probs=5.7
Q ss_pred eeeCCCCCcc
Q psy13753 33 LKCRLCKTNV 42 (229)
Q Consensus 33 l~C~~C~~~~ 42 (229)
|+|..|.|..
T Consensus 1 y~C~~C~y~t 10 (24)
T PF13909_consen 1 YKCPHCSYST 10 (24)
T ss_dssp EE-SSSS-EE
T ss_pred CCCCCCCCcC
Confidence 5788887765
Done!